Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	NormalRefReads_WU	NormalVarReads_WU	NormalVAF_WU	TumorRefReads_WU	TumorVarReads_WU	TumorVAF_WU	RNARefReads_WU	RNAVarReads_WU	RNAVAF_WU
CDC42	0	genome.wustl.edu	36	1	22277647	22277647	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2984-03A-01D-0739-09	TCGA-AB-2984-11A-01D-0739-09	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	3c90e4b9-81cd-4033-b233-593c37fbac1f	7e5f93a8-6056-47d1-9c1b-e8628c5699e6	1	22277647	22277647	C	T	SNP	CDC42	NM_001039802.1	human	genbank	54_36p	+1	reviewed	missense	c.89	p.S30L	1.000	HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors	856	0	0.00	612	533	46.55	40	82	67.21
SRRM1	0	genome.wustl.edu	36	1	24868534	24868534	+	Silent	SNP	T	T	A			TCGA-AB-2984-03A-01D-0739-09	TCGA-AB-2984-11A-01D-0739-09	T	T	T	A	T	T	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	3c90e4b9-81cd-4033-b233-593c37fbac1f	7e5f93a8-6056-47d1-9c1b-e8628c5699e6	1	24868534	24868534	T	A	SNP	SRRM1	NM_005839.3	human	genbank	54_36p	+1	validated	silent	c.2073	p.P691	0.988	NULL	HMMPfam_PWI,HMMSmart_SM00311,superfamily_PWI domain	-	no_errors	626	0	0.00	507	423	45.44	64	63	49.61
NRAS	0	genome.wustl.edu	36	1	115060270	115060270	+	Missense_Mutation	SNP	C	C	T	rs121913237		TCGA-AB-2984-03A-01D-0739-09	TCGA-AB-2984-11A-01D-0739-09	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	3c90e4b9-81cd-4033-b233-593c37fbac1f	7e5f93a8-6056-47d1-9c1b-e8628c5699e6	1	115060270	115060270	C	T	SNP	NRAS	NM_002524.3	human	genbank	54_36p	-1	reviewed	missense	c.35	p.G12D	1.000	HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors	1095	1	0.09	815	500	37.97	21	9	29.03
IDH1	0	genome.wustl.edu	36	2	208821358	208821358	+	Missense_Mutation	SNP	G	G	A	rs121913499		TCGA-AB-2984-03A-01D-0739-09	TCGA-AB-2984-11A-01D-0739-09	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	3c90e4b9-81cd-4033-b233-593c37fbac1f	7e5f93a8-6056-47d1-9c1b-e8628c5699e6	2	208821358	208821358	G	A	SNP	IDH1	NM_005896.2	human	genbank	54_36p	-1	reviewed	missense	c.394	p.R132C	1.000	HMMPfam_Iso_dh,superfamily_Isocitrate/Isopropylmalate dehydrogenase-like	HMMPfam_Iso_dh,PatternScan_IDH_IMDH,superfamily_Isocitrate/Isopropylmalate dehydrogenase-like	-	no_errors	858	0	0.00	592	570	49.01	11	6	35.29
IMPG2	0	genome.wustl.edu	36	3	102445364	102445364	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2984-03A-01D-0739-09	TCGA-AB-2984-11A-01D-0739-09	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	3c90e4b9-81cd-4033-b233-593c37fbac1f	7e5f93a8-6056-47d1-9c1b-e8628c5699e6	3	102445364	102445364	C	T	SNP	IMPG2	NM_016247.2	human	genbank	54_36p	-1	validated	missense	c.2501	p.G834D	0.018	NULL	HMMPfam_SEA,HMMSmart_SM00200,PatternScan_EGF_2,superfamily_EGF/Laminin,superfamily_SEA domain	-	no_errors	1097	0	0.00	898	840	48.33	NA	NA	NA
PCDHA6	0	genome.wustl.edu	36	5	140190053	140190053	+	Silent	SNP	G	G	A			TCGA-AB-2984-03A-01D-0739-09	TCGA-AB-2984-11A-01D-0739-09	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	3c90e4b9-81cd-4033-b233-593c37fbac1f	7e5f93a8-6056-47d1-9c1b-e8628c5699e6	5	140190053	140190053	G	A	SNP	PCDHA6	NM_018909.2	human	genbank	54_36p	+1	reviewed	silent	c.2193	p.A731	0.423	NULL	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin-like	-	no_errors	65	0	0.00	89	76	45.78	NA	NA	NA
ANKRD26	0	genome.wustl.edu	36	10	27357859	27357859	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2984-03A-01D-0739-09	TCGA-AB-2984-11A-01D-0739-09	C	C	C	G	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	3c90e4b9-81cd-4033-b233-593c37fbac1f	7e5f93a8-6056-47d1-9c1b-e8628c5699e6	10	27357859	27357859	C	G	SNP	ANKRD26	NM_014915.2	human	genbank	54_36p	-1	validated	missense	c.3900	p.K1300N	1.000	NULL	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK	-	no_errors	404	0	0.00	339	335	49.63	0	7	100.00
LTA4H	0	genome.wustl.edu	36	12	94945444	94945444	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2984-03A-01D-0739-09	TCGA-AB-2984-11A-01D-0739-09	A	A	A	G	A	A	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	3c90e4b9-81cd-4033-b233-593c37fbac1f	7e5f93a8-6056-47d1-9c1b-e8628c5699e6	12	94945444	94945444	A	G	SNP	LTA4H	NM_000895.1	human	genbank	54_36p	-1	provisional	missense	c.320	p.F107S	0.946	HMMPfam_Peptidase_M1,superfamily_Leukotriene A4 hydrolase N-terminal domain	"HMMPfam_Peptidase_M1,HMMPfam_Leuk-A4-hydro_C,superfamily_ARM repeat,superfamily_Metalloproteases (""zincins"") catalytic domain,superfamily_Leukotriene A4 hydrolase N-terminal domain"	-	no_errors	632	0	0.00	500	405	44.65	4	11	73.33
FREM2	0	genome.wustl.edu	36	13	38320657	38320657	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2984-03A-01D-0739-09	TCGA-AB-2984-11A-01D-0739-09	C	C	C	G	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	3c90e4b9-81cd-4033-b233-593c37fbac1f	7e5f93a8-6056-47d1-9c1b-e8628c5699e6	13	38320657	38320657	C	G	SNP	FREM2	NM_207361.4	human	genbank	54_36p	+1	reviewed	missense	c.6229	p.Q2077E	1.000	HMMPfam_Calx-beta,HMMSmart_SM00237	HMMPfam_Calx-beta,HMMSmart_SM00237	-	no_errors	845	0	0.00	584	540	48.00	NA	NA	NA
BABAM1	0	genome.wustl.edu	36	19	17247609	17247609	+	Splice_Site	SNP	G	G	T			TCGA-AB-2984-03A-01D-0739-09	TCGA-AB-2984-11A-01D-0739-09	G	G	G	T	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	3c90e4b9-81cd-4033-b233-593c37fbac1f	7e5f93a8-6056-47d1-9c1b-e8628c5699e6	19	17247609	17247609	G	T	SNP	C19orf62	NM_001033549.1	human	genbank	54_36p	+1	validated	splice_site	c.545-1	e5-1	1.000	-	-	-	no_errors	756	0	0.00	332	211	38.86	7	7	43.75
CEP170	0	genome.wustl.edu	36	1	241429086	241429087	+	In_Frame_Ins	INS	-	-	ATA			TCGA-AB-2984-03A-01D-0739-09	TCGA-AB-2984-11A-01D-0739-09	-	-	-	ATA	-	-	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	3c90e4b9-81cd-4033-b233-593c37fbac1f	7e5f93a8-6056-47d1-9c1b-e8628c5699e6	1	241429086	241429087	-	ATA	INS	CEP170	NM_014812.1	human	genbank	54_36p	-1	reviewed	in_frame_ins	c.530_529	p.177in_frame_insL	1.000:1.000	NULL	HMMPfam_FHA,HMMSmart_SM00240,superfamily_SMAD/FHA domain	-	no_errors	385	0	0.00	550	184	25.07	11	0	0.00
NPM1	0	genome.wustl.edu	36	5	170770152	170770153	+	Frame_Shift_Ins	INS	-	-	TCTG			TCGA-AB-2984-03A-01D-0739-09	TCGA-AB-2984-11A-01D-0739-09	-	-	-	TCTG	-	-	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	3c90e4b9-81cd-4033-b233-593c37fbac1f	7e5f93a8-6056-47d1-9c1b-e8628c5699e6	5	170770152	170770153	-	TCTG	INS	NPM1	NM_002520.1	human	genbank	54_36p	+1	validated	frame_shift_ins	c.863_864	p.W288fs	1.000:1.000	NULL	HMMPfam_Nucleoplasmin,superfamily_Nucleoplasmin-like core domain	-	no_errors	NA	NA	NA	NA	NA	NA	NA	NA	NA