Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	NormalRefReads_WU	NormalVarReads_WU	NormalVAF_WU	TumorRefReads_WU	TumorVarReads_WU	TumorVAF_WU	RNARefReads_WU	RNAVarReads_WU	RNAVAF_WU
NRAS	0	genome.wustl.edu	36	1	115060267	115060267	+	Missense_Mutation	SNP	C	C	T	rs121434596		TCGA-AB-2967-03A-01D-0739-09	TCGA-AB-2967-11A-01D-0739-09	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	60a69167-464f-4df2-a6f9-ed402ed58f76	b5babadf-7b10-45fc-8c93-5f68a08b07ed	1	115060267	115060267	C	T	SNP	NRAS	NM_002524.3	human	genbank	54_36p	-1	reviewed	missense	c.38	p.G13D	1.000	HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors	1990	185	8.49	643	549	45.98	22	3	12.00
DNMT3A	0	genome.wustl.edu	36	2	25321667	25321667	+	Nonsense_Mutation	SNP	C	C	A			TCGA-AB-2967-03A-01D-0739-09	TCGA-AB-2967-11A-01D-0739-09	C	C	C	A	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	60a69167-464f-4df2-a6f9-ed402ed58f76	b5babadf-7b10-45fc-8c93-5f68a08b07ed	2	25321667	25321667	C	A	SNP	DNMT3A	NM_022552.3	human	genbank	54_36p	-1	reviewed	nonsense	c.1513	p.E505*	1.000	NULL	HMMPfam_PWWP,HMMSmart_SM00293,HMMPfam_DNA_methylase,superfamily_FYVE/PHD zinc finger,PatternScan_C5_MTASE_1,superfamily_S-adenosyl-L-methionine-dependent methyltransferases,superfamily_Tudor/PWWP/MBT	-	no_errors	664	47	6.57	113	135	54.22	8	7	46.67
LOC100128342	0	genome.wustl.edu	36	3	15479581	15479581	+	Silent	SNP	C	C	A			TCGA-AB-2967-03A-01D-0739-09	TCGA-AB-2967-11A-01D-0739-09	C	C	C	A	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	60a69167-464f-4df2-a6f9-ed402ed58f76	b5babadf-7b10-45fc-8c93-5f68a08b07ed	3	15479581	15479581	C	A	SNP	LOC100128342	XM_001721613.1	human	genbank	54_36p	-1	model	silent	c.75	p.V25	0.000	NULL	NULL	-	no_errors	1812	171	8.59	514	436	45.80	2	0	0.00
LRRC2	0	genome.wustl.edu	36	3	46549403	46549403	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2967-03A-01D-0739-09	TCGA-AB-2967-11A-01D-0739-09	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	60a69167-464f-4df2-a6f9-ed402ed58f76	b5babadf-7b10-45fc-8c93-5f68a08b07ed	3	46549403	46549403	C	T	SNP	LRRC2	NM_024512.3	human	genbank	54_36p	-1	validated	missense	c.491	p.G164D	0.998	superfamily_SSF52058	HMMPfam_LRR_1,HMMSmart_LRR_TYP,superfamily_SSF52058	-	no_errors	1882	143	7.05	327	301	47.93	NA	NA	NA
OR8A1	0	genome.wustl.edu	36	11	123945508	123945508	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2967-03A-01D-0739-09	TCGA-AB-2967-11A-01D-0739-09	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	60a69167-464f-4df2-a6f9-ed402ed58f76	b5babadf-7b10-45fc-8c93-5f68a08b07ed	11	123945508	123945508	G	A	SNP	OR8A1	NM_001005194.1	human	genbank	54_36p	+1	provisional	missense	c.334	p.A112T	0.008	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors	2444	217	8.14	844	893	51.38	NA	NA	NA
GRIP1	0	genome.wustl.edu	36	12	65124752	65124752	+	Silent	SNP	G	G	A			TCGA-AB-2967-03A-01D-0739-09	TCGA-AB-2967-11A-01D-0739-09	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	60a69167-464f-4df2-a6f9-ed402ed58f76	b5babadf-7b10-45fc-8c93-5f68a08b07ed	12	65124752	65124752	G	A	SNP	GRIP1	NM_021150.2	human	genbank	54_36p	-1	validated	silent	c.1410	p.D470	1.000	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like	-	no_errors	1289	155	10.72	554	587	51.40	NA	NA	NA
FAM57B	0	genome.wustl.edu	36	16	29944637	29944637	+	Nonsense_Mutation	SNP	G	G	A			TCGA-AB-2967-03A-01D-0739-09	TCGA-AB-2967-11A-01D-0739-09	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	60a69167-464f-4df2-a6f9-ed402ed58f76	b5babadf-7b10-45fc-8c93-5f68a08b07ed	16	29944637	29944637	G	A	SNP	FAM57B	NM_031478.4	human	genbank	54_36p	-1	validated	nonsense	c.451	p.R151*	1.000	HMMPfam_TRAM_LAG1_CLN8,HMMSmart_SM00724	HMMPfam_TRAM_LAG1_CLN8,HMMSmart_SM00724	-	no_errors	467	51	9.81	89	77	45.83	0	1	100.00
HYDIN	0	genome.wustl.edu	36	16	69431528	69431528	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2967-03A-01D-0739-09	TCGA-AB-2967-11A-01D-0739-09	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	60a69167-464f-4df2-a6f9-ed402ed58f76	b5babadf-7b10-45fc-8c93-5f68a08b07ed	16	69431528	69431528	G	A	SNP	HYDIN	NM_032821.2	human	genbank	54_36p	-1	validated	missense	c.12980	p.A4327V	1.000	superfamily_PapD-like	superfamily_PapD-like,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors	2183	85	3.74	1603	408	20.28	NA	NA	NA
SEMA4A	0	genome.wustl.edu	36	1	154392827	154392828	+	Splice_Site	DEL	AG	AG	-			TCGA-AB-2967-03A-01D-0739-09	TCGA-AB-2967-11A-01D-0739-09	AG	AG	AG	-	AG	AG	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	60a69167-464f-4df2-a6f9-ed402ed58f76	b5babadf-7b10-45fc-8c93-5f68a08b07ed	1	154392827	154392828	AG	-	DEL	SEMA4A	NM_022367.2	human	genbank	54_36p	+1	provisional	splice_site_del	c.140-2_140-1	e2-1	0.852:0.849	-	-	-	no_errors	0	160	7.02	0	240	43.40	0	2	12.50
NPM1	0	genome.wustl.edu	36	5	170770152	170770153	+	Frame_Shift_Ins	INS	-	-	TCTG			TCGA-AB-2967-03A-01D-0739-09	TCGA-AB-2967-11A-01D-0739-09	-	-	-	TCTG	-	-	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	60a69167-464f-4df2-a6f9-ed402ed58f76	b5babadf-7b10-45fc-8c93-5f68a08b07ed	5	170770152	170770153	-	TCTG	INS	NPM1	NM_002520.1	human	genbank	54_36p	+1	validated	frame_shift_ins	c.863_864	p.W288fs	1.000:1.000	NULL	HMMPfam_Nucleoplasmin,superfamily_Nucleoplasmin-like core domain	-	no_errors	NA	NA	NA	NA	NA	NA	NA	NA	NA
PHIP	0	genome.wustl.edu	36	6	79721355	79721356	+	Frame_Shift_Ins	INS	-	-	T			TCGA-AB-2967-03A-01D-0739-09	TCGA-AB-2967-11A-01D-0739-09	-	-	-	T	-	-	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	60a69167-464f-4df2-a6f9-ed402ed58f76	b5babadf-7b10-45fc-8c93-5f68a08b07ed	6	79721355	79721356	-	T	INS	PHIP	NM_017934.5	human	genbank	54_36p	-1	validated	frame_shift_ins	c.3948_3947	p.Y1316fs	0.845:0.914	superfamily_Bromodomain	HMMPfam_Bromodomain,HMMSmart_SM00297,superfamily_Bromodomain,HMMSmart_SM00320,superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase,PatternScan_BROMODOMAIN_1,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors	1645	114	6.48	578	459	44.26	16	5	23.81
RAD21	0	genome.wustl.edu	36	8	117937673	117937674	+	Frame_Shift_Ins	INS	-	-	G			TCGA-AB-2967-03A-01D-0739-09	TCGA-AB-2967-11A-01D-0739-09	-	-	-	G	-	-	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	60a69167-464f-4df2-a6f9-ed402ed58f76	b5babadf-7b10-45fc-8c93-5f68a08b07ed	8	117937673	117937674	-	G	INS	RAD21	NM_006265.2	human	genbank	54_36p	-1	reviewed	frame_shift_ins	c.850_849	p.V283fs	1.000:0.980	NULL	HMMPfam_Rad21_Rec8,HMMPfam_Rad21_Rec8_N	-	no_errors	676	53	7.27	237	147	38.28	0	1	100.00