Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	NormalRefReads_WU	NormalVarReads_WU	NormalVAF_WU	TumorRefReads_WU	TumorVarReads_WU	TumorVAF_WU	RNARefReads_WU	RNAVarReads_WU	RNAVAF_WU
MLL3	0	genome.wustl.edu	36	7	151505094	151505094	+	Nonsense_Mutation	SNP	C	C	A			TCGA-AB-2940-03A-01W-0733-08	TCGA-AB-2940-11A-01W-0732-08	C	C	C	A	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	6d2b23e2-12c0-4f19-a8f4-defe50ffeeb5	286c5568-d97b-4af0-9c61-47d91dd7ec12	7	151505094	151505094	C	A	SNP	MLL3	NM_170606.2	human	genbank	54_36p	-1	reviewed	nonsense	c.8377	p.E2793*	0.943	NULL	PatternScan_HMGI_Y,HMMPfam_HMG_box,HMMSmart_SM00398,HMMPfam_SET,HMMSmart_SM00317,HMMSmart_SM00184,HMMSmart_SM00249,HMMSmart_SM00508,HMMPfam_FYRN,HMMPfam_FYRC,superfamily_FYVE/PHD zinc finger,HMMPfam_AT_hook,HMMSmart_SM00542,HMMSmart_SM00541,PatternScan_ZF_PHD_1,HMMPfam_PHD,PatternScan_ATPASE_ALPHA_BETA,superfamily_SET domain	-	no_errors	226	7	2.99	96	21	17.95	44	8	15.38
NEURL4	0	genome.wustl.edu	36	17	7169461	7169461	+	Silent	SNP	C	C	T			TCGA-AB-2940-03A-01W-0733-08	TCGA-AB-2940-11A-01W-0732-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	6d2b23e2-12c0-4f19-a8f4-defe50ffeeb5	286c5568-d97b-4af0-9c61-47d91dd7ec12	17	7169461	7169461	C	T	SNP	NEURL4	NM_032442.1	human	genbank	54_36p	-1	validated	silent	c.1422	p.G474	1.000	NULL	HMMPfam_Neuralized,HMMSmart_SM00588	-	no_errors	57	6	9.52	26	8	23.53	32	6	15.79
LOC729135	0	genome.wustl.edu	36	1	147939842	147939843	+	RNA	INS	-	-	C			TCGA-AB-2940-03A-01W-0733-08	TCGA-AB-2940-11A-01W-0732-08	-	-	-	C	-	-	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	6d2b23e2-12c0-4f19-a8f4-defe50ffeeb5	286c5568-d97b-4af0-9c61-47d91dd7ec12	1	147939842	147939843	-	C	INS	LOC729135	XR_039107.1	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.009:0.013	-	-	-	pseudogene	8	0	0.00	29	8	21.62	22	0	0.00
CEBPA	0	genome.wustl.edu	36	19	38484235	38484236	+	In_Frame_Ins	INS	-	-	CCA			TCGA-AB-2940-03A-01W-0733-08	TCGA-AB-2940-11A-01W-0732-08	-	-	-	CCA	-	-	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	6d2b23e2-12c0-4f19-a8f4-defe50ffeeb5	286c5568-d97b-4af0-9c61-47d91dd7ec12	19	38484235	38484236	-	CCA	INS	CEBPA	NM_004364.3	human	genbank	54_36p	-1	reviewed	in_frame_ins	c.926_925	p.309in_frame_insV	1.000:1.000	HMMSmart_BRLZ,HMMPfam_bZIP_2	HMMSmart_BRLZ,PatternScan_BZIP_BASIC,HMMPfam_bZIP_2	-	no_errors	1	0	0.00	11	8	42.11	143	114	44.36
CEBPA	0	genome.wustl.edu	36	19	38485093	38485093	+	Frame_Shift_Del	DEL	G	G	-	rs137852728		TCGA-AB-2940-03A-01W-0733-08	TCGA-AB-2940-11A-01W-0732-08	G	G	G	-	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	6d2b23e2-12c0-4f19-a8f4-defe50ffeeb5	286c5568-d97b-4af0-9c61-47d91dd7ec12	19	38485093	38485093	G	-	DEL	CEBPA	NM_004364.3	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.68	p.P23fs	0.998	NULL	HMMSmart_BRLZ,PatternScan_BZIP_BASIC,HMMPfam_bZIP_2	-	no_errors	0	0	0.00	0	0	0.00	64	31	32.29