Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	NormalRefReads_WU	NormalVarReads_WU	NormalVAF_WU	TumorRefReads_WU	TumorVarReads_WU	TumorVAF_WU	RNARefReads_WU	RNAVarReads_WU	RNAVAF_WU
MT-CO3	0	genome.wustl.edu	36	MT	9554	9554	+	Nonsense_Mutation	SNP	G	G	A			TCGA-AB-2936-03A-01W-0745-08	TCGA-AB-2936-11A-01W-0745-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	0194977a-f658-4a23-8913-4a4797b16698	b592578a-da5c-4b13-9938-ec6c13f7ec50	MT	9554	9554	G	A	SNP	MT-CO3	ENST00000362079	human	ensembl	54_36p	+1	known	nonsense	c.347	p.W116*	NULL	HMMPfam_COX3,superfamily_CytC_oxdse_III	HMMPfam_COX3,superfamily_CytC_oxdse_III	-	no_stop_codon:bad_bp_length_for_coding_region	6797	88	1.27	321	82	20.30	NA	NA	NA
TCEAL6	0	genome.wustl.edu	36	X	101282737	101282737	+	Nonsense_Mutation	SNP	C	C	A			TCGA-AB-2936-03A-01W-0745-08	TCGA-AB-2936-11A-01W-0745-08	C	C	C	A	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	0194977a-f658-4a23-8913-4a4797b16698	b592578a-da5c-4b13-9938-ec6c13f7ec50	X	101282737	101282737	C	A	SNP	TCEAL6	NM_001006938.2	human	genbank	54_36p	-1	validated	nonsense	c.223	p.E75*	0.009	HMMPfam_TFA	HMMPfam_TFA	-	no_errors	339	10	2.86	82	61	42.36	1	0	0.00
NXF2B	0	genome.wustl.edu	36	X	101511581	101511581	+	Silent	SNP	G	G	A			TCGA-AB-2936-03A-01W-0745-08	TCGA-AB-2936-11A-01W-0745-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	0194977a-f658-4a23-8913-4a4797b16698	b592578a-da5c-4b13-9938-ec6c13f7ec50	X	101511581	101511581	G	A	SNP	NXF2B	NM_001099686.1	human	genbank	54_36p	-1	inferred	silent	c.192	p.S64	0.000	NULL	HMMPfam_NTF2,HMMPfam_TAP_C,HMMSmart_TAP_C,superfamily_UBA_like,HMMPfam_Tap-RNA_bind,superfamily_SSF52058,superfamily_SSF54427,superfamily_SSF54928	-	no_errors	186	1	0.53	11	8	42.11	NA	NA	NA
WDR64	0	genome.wustl.edu	36	1	239979605	239979605	+	Silent	SNP	G	G	C			TCGA-AB-2936-03A-01W-0745-08	TCGA-AB-2936-11A-01W-0745-08	G	G	G	C	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	0194977a-f658-4a23-8913-4a4797b16698	b592578a-da5c-4b13-9938-ec6c13f7ec50	1	239979605	239979605	G	C	SNP	WDR64	NM_144625.3	human	genbank	54_36p	+1	validated	silent	c.858	p.L286	0.030	superfamily_WD40 repeat-like	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40	-	no_errors	856	7	0.81	82	58	41.43	NA	NA	NA
CAMK4	0	genome.wustl.edu	36	5	110738461	110738461	+	Silent	SNP	C	C	T			TCGA-AB-2936-03A-01W-0745-08	TCGA-AB-2936-11A-01W-0745-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	0194977a-f658-4a23-8913-4a4797b16698	b592578a-da5c-4b13-9938-ec6c13f7ec50	5	110738461	110738461	C	T	SNP	CAMK4	NM_001744.3	human	genbank	54_36p	+1	reviewed	silent	c.255	p.I85	0.982	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase	HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors	703	10	1.38	70	69	49.64	16	0	0.00
C7orf10	0	genome.wustl.edu	36	7	40201173	40201173	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2936-03A-01W-0745-08	TCGA-AB-2936-11A-01W-0745-08	G	G	G	T	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	0194977a-f658-4a23-8913-4a4797b16698	b592578a-da5c-4b13-9938-ec6c13f7ec50	7	40201173	40201173	G	T	SNP	C7orf10	NM_024728.1	human	genbank	54_36p	+1	predicted	missense	c.383	p.C128F	1.000	HMMPfam_CoA_transf_3,superfamily_CoA-Trfase_fam_III	HMMPfam_CoA_transf_3,superfamily_CoA-Trfase_fam_III	-	no_errors	562	18	3.05	70	30	29.70	NA	NA	NA
NRF1	0	genome.wustl.edu	36	7	129136160	129136160	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2936-03A-01W-0745-08	TCGA-AB-2936-11A-01W-0745-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	0194977a-f658-4a23-8913-4a4797b16698	b592578a-da5c-4b13-9938-ec6c13f7ec50	7	129136160	129136160	C	T	SNP	NRF1	NM_001040110.1	human	genbank	54_36p	+1	reviewed	missense	c.616	p.R206W	1.000	HMMPfam_Nrf1_DNA-bind	HMMPfam_Nrf1_DNA-bind,HMMPfam_Nrf1_activ_bdg	-	no_errors	723	20	2.68	90	47	33.81	20	26	56.52
IDH2	0	genome.wustl.edu	36	15	88432938	88432938	+	Missense_Mutation	SNP	C	C	T	rs121913502		TCGA-AB-2936-03A-01W-0745-08	TCGA-AB-2936-11A-01W-0745-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	0194977a-f658-4a23-8913-4a4797b16698	b592578a-da5c-4b13-9938-ec6c13f7ec50	15	88432938	88432938	C	T	SNP	IDH2	NM_002168.2	human	genbank	54_36p	-1	reviewed	missense	c.419	p.R140Q	1.000	HMMPfam_Iso_dh,superfamily_Isocitrate/Isopropylmalate dehydrogenase-like	HMMPfam_Iso_dh,PatternScan_IDH_IMDH,superfamily_Isocitrate/Isopropylmalate dehydrogenase-like	-	no_errors	339	9	2.55	28	18	39.13	162	154	48.73
ACTL9	0	genome.wustl.edu	36	19	8669551	8669551	+	Silent	SNP	G	G	A			TCGA-AB-2936-03A-01W-0745-08	TCGA-AB-2936-11A-01W-0745-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	0194977a-f658-4a23-8913-4a4797b16698	b592578a-da5c-4b13-9938-ec6c13f7ec50	19	8669551	8669551	G	A	SNP	MGC33407	NM_178525.3	human	genbank	54_36p	-1	validated	silent	c.501	p.F167	1.000	HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain	PatternScan_N6_MTASE,HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain	-	no_errors	171	3	1.71	21	18	46.15	NA	NA	NA
COL5A3	0	genome.wustl.edu	36	19	9949363	9949363	+	Silent	SNP	C	C	T			TCGA-AB-2936-03A-01W-0745-08	TCGA-AB-2936-11A-01W-0745-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	0194977a-f658-4a23-8913-4a4797b16698	b592578a-da5c-4b13-9938-ec6c13f7ec50	19	9949363	9949363	C	T	SNP	COL5A3	NM_015719.3	human	genbank	54_36p	-1	reviewed	silent	c.3033	p.E1011	1.000	NULL	HMMPfam_COLFI,HMMSmart_SM00038,HMMSmart_SM00210,HMMPfam_Collagen,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2	-	no_errors	1196	27	2.19	80	68	45.95	NA	NA	NA
RUNX1	0	genome.wustl.edu	36	21	35093477	35093477	+	Nonsense_Mutation	SNP	G	G	A			TCGA-AB-2936-03A-01W-0745-08	TCGA-AB-2936-11A-01W-0745-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	0194977a-f658-4a23-8913-4a4797b16698	b592578a-da5c-4b13-9938-ec6c13f7ec50	21	35093477	35093477	G	A	SNP	RUNX1	NM_001754.2	human	genbank	54_36p	-1	reviewed	nonsense	c.958	p.R320*	1.000	NULL	superfamily_p53-like transcription factors,HMMPfam_Runt,HMMPfam_RunxI	-	no_errors	218	1	0.45	30	11	26.83	701	275	28.12