Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	NormalRefReads_WU	NormalVarReads_WU	NormalVAF_WU	TumorRefReads_WU	TumorVarReads_WU	TumorVAF_WU	RNARefReads_WU	RNAVarReads_WU	RNAVAF_WU
TRO	0	genome.wustl.edu	36	X	54973336	54973336	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2930-03A-01W-0761-09	TCGA-AB-2930-11A-01W-0745-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	0f30992e-555b-429e-89d5-7a7edc5934d7	4ab787f8-8273-4436-82d6-0c3a3c805bde	X	54973336	54973336	G	A	SNP	TRO	NM_001039705.1	human	genbank	54_36p	+1	reviewed	missense	c.3454	p.A1152T	0.002	NULL	HMMPfam_MAGE	-	no_errors	34	2	5.56	47	28	37.33	0	3	100.00
CYP4A22	0	genome.wustl.edu	36	1	47387010	47387010	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2930-03A-01W-0761-09	TCGA-AB-2930-11A-01W-0745-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	0f30992e-555b-429e-89d5-7a7edc5934d7	4ab787f8-8273-4436-82d6-0c3a3c805bde	1	47387010	47387010	G	A	SNP	CYP4A22	NM_001010969.2	human	genbank	54_36p	+1	reviewed	missense	c.1514	p.R505H	0.934	HMMPfam_p450,superfamily_Cytochrome P450	HMMPfam_p450,superfamily_Cytochrome P450,PatternScan_CYTOCHROME_P450	-	no_errors	76	4	5.00	36	41	53.25	NA	NA	NA
MAT1A	0	genome.wustl.edu	36	10	82029970	82029970	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2930-03A-01W-0761-09	TCGA-AB-2930-11A-01W-0745-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	0f30992e-555b-429e-89d5-7a7edc5934d7	4ab787f8-8273-4436-82d6-0c3a3c805bde	10	82029970	82029970	C	T	SNP	MAT1A	NM_000429.2	human	genbank	54_36p	-1	reviewed	missense	c.488	p.R163Q	0.977	HMMPfam_S-AdoMet_synt_M,superfamily_S-AdoMet_synt	HMMPfam_S-AdoMet_synt_N,HMMPfam_S-AdoMet_synt_M,HMMPfam_S-AdoMet_synt_C,PatternScan_ADOMET_SYNTHETASE_1,PatternScan_ADOMET_SYNTHETASE_2,superfamily_S-AdoMet_synt	-	no_errors	67	7	9.09	33	54	62.07	NA	NA	NA
PC	0	genome.wustl.edu	36	11	66395519	66395519	+	Silent	SNP	G	G	A			TCGA-AB-2930-03A-01W-0761-09	TCGA-AB-2930-11A-01W-0745-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	0f30992e-555b-429e-89d5-7a7edc5934d7	4ab787f8-8273-4436-82d6-0c3a3c805bde	11	66395519	66395519	G	A	SNP	PC	NM_000920.3	human	genbank	54_36p	-1	reviewed	silent	c.330	p.N110	0.244	HMMPfam_CPSase_L_chain,superfamily_PreATP-grasp-like	HMMPfam_Biotin_lipoyl,HMMPfam_HMGL-like,PatternScan_BIOTIN,HMMPfam_PYC_OADA,HMMPfam_CPSase_L_D2,HMMPfam_CPSase_L_chain,HMMPfam_Biotin_carb_C,superfamily_Hybrid_motif,superfamily_Rudmnt_hyb_motif,superfamily_PreATP-grasp-like,superfamily_SSF51569,superfamily_SSF56059,superfamily_SSF89000	-	no_errors	20	1	4.76	4	6	60.00	0	2	100.00
KCNA5	0	genome.wustl.edu	36	12	5025095	5025095	+	Silent	SNP	C	C	A			TCGA-AB-2930-03A-01W-0761-09	TCGA-AB-2930-11A-01W-0745-08	C	C	C	A	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	0f30992e-555b-429e-89d5-7a7edc5934d7	4ab787f8-8273-4436-82d6-0c3a3c805bde	12	5025095	5025095	C	A	SNP	KCNA5	NM_002234.2	human	genbank	54_36p	+1	reviewed	silent	c.1521	p.T507	1.000	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels	HMMSmart_SM00225,HMMPfam_K_tetra,HMMPfam_Ion_trans,superfamily_POZ domain,superfamily_Voltage-gated potassium channels	-	no_errors	31	2	6.06	22	18	45.00	1	2	66.67
ZSCAN5A	0	genome.wustl.edu	36	19	61425905	61425905	+	Silent	SNP	T	T	C			TCGA-AB-2930-03A-01W-0761-09	TCGA-AB-2930-11A-01W-0745-08	T	T	T	C	T	T	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	0f30992e-555b-429e-89d5-7a7edc5934d7	4ab787f8-8273-4436-82d6-0c3a3c805bde	19	61425905	61425905	T	C	SNP	ZSCAN5A	NM_024303.1	human	genbank	54_36p	-1	provisional	silent	c.606	p.L202	0.014	NULL	HMMPfam_SCAN,HMMSmart_SCAN,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors	68	6	8.11	56	56	50.00	6	6	50.00
ARAP2	0	genome.wustl.edu	36	4	35825560	35825563	+	Splice_Site	DEL	CTTA	CTTA	-			TCGA-AB-2930-03A-01W-0761-09	TCGA-AB-2930-11A-01W-0745-08	CTTA	CTTA	CTTA	-	CTTA	CTTA	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	0f30992e-555b-429e-89d5-7a7edc5934d7	4ab787f8-8273-4436-82d6-0c3a3c805bde	4	35825560	35825563	CTTA	-	DEL	ARAP2	NM_015230.2	human	genbank	54_36p	-1	reviewed	splice_site_del	c.3199+2_3199+1	e17+2	0.990:0.994:0.996:1.000	-	-	-	no_errors	NA	NA	NA	NA	NA	NA	NA	NA	NA
LOC642738	0	genome.wustl.edu	36	6	159867366	159867367	+	RNA	INS	-	-	TT	rs61112029		TCGA-AB-2930-03A-01W-0761-09	TCGA-AB-2930-11A-01W-0745-08	-	-	-	TT	-	-	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	0f30992e-555b-429e-89d5-7a7edc5934d7	4ab787f8-8273-4436-82d6-0c3a3c805bde	6	159867366	159867367	-	TT	INS	LOC642738	XR_017625.2	human	genbank	54_36p	-1	model	rna	NULL	NULL	1.000:1.000	-	-	-	pseudogene	19	0	0.00	14	0	0.00	0	0	0.00
OR5P2	0	genome.wustl.edu	36	11	7774959	7774960	+	In_Frame_Ins	INS	-	-	ATATGGTTACCAGGTAGATGC			TCGA-AB-2930-03A-01W-0761-09	TCGA-AB-2930-11A-01W-0745-08	-	-	-	ATATGGTTACCAGGTAGATGC	-	-	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	0f30992e-555b-429e-89d5-7a7edc5934d7	4ab787f8-8273-4436-82d6-0c3a3c805bde	11	7774959	7774960	-	ATATGGTTACCAGGTAGATGC	INS	OR5P2	NM_153444.1	human	genbank	54_36p	-1	provisional	in_frame_ins	c.107_106	p.36in_frame_insCIYLVTI	0.149:0.139	superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors	NA	NA	NA	NA	NA	NA	NA	NA	NA
WT1	0	genome.wustl.edu	36	11	32374517	32374518	+	Frame_Shift_Ins	INS	-	-	A			TCGA-AB-2930-03A-01W-0761-09	TCGA-AB-2930-11A-01W-0745-08	-	-	-	A	-	-	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	0f30992e-555b-429e-89d5-7a7edc5934d7	4ab787f8-8273-4436-82d6-0c3a3c805bde	11	32374517	32374518	-	A	INS	WT1	NM_024426.3	human	genbank	54_36p	-1	reviewed	frame_shift_ins	c.1111_1110	p.V370fs	1.000:0.986	HMMPfam_WT1	HMMPfam_WT1,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors	27	1	3.57	7	8	53.33	1	9	90.00
WT1	0	genome.wustl.edu	36	11	32374521	32374522	+	Frame_Shift_Ins	INS	-	-	C			TCGA-AB-2930-03A-01W-0761-09	TCGA-AB-2930-11A-01W-0745-08	-	-	-	C	-	-	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	0f30992e-555b-429e-89d5-7a7edc5934d7	4ab787f8-8273-4436-82d6-0c3a3c805bde	11	32374521	32374522	-	C	INS	WT1	NM_024426.3	human	genbank	54_36p	-1	reviewed	frame_shift_ins	c.1107_1106	p.R370fs	0.458:0.832	HMMPfam_WT1	HMMPfam_WT1,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors	27	0	0.00	11	4	26.67	9	0	0.00
FLT3	0	genome.wustl.edu	36	13	27506273	27506274	+	In_Frame_Ins	INS	-	-	GAAATCAACGTAGAAGTACTCATTATCTGAGGAGCCGGTACC			TCGA-AB-2930-03A-01W-0761-09	TCGA-AB-2930-11A-01W-0745-08	-	-	-	GAAATCAACGTAGAAGTACTCATTATCTGAGGAGCCGGTACC	-	-	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	0f30992e-555b-429e-89d5-7a7edc5934d7	4ab787f8-8273-4436-82d6-0c3a3c805bde	13	27506273	27506274	-	GAAATCAACGTAGAAGTACTCATTATCTGAGGAGCCGGTACC	INS	FLT3	NM_004119.2	human	genbank	54_36p	-1	reviewed	in_frame_ins	c.1783_1782	p.594in_frame_insGTGSSDNEYFYVDF	1.000:1.000	superfamily_Kinase_like	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_RECEPTOR_TYR_KIN_III,PatternScan_PROTEIN_KINASE_TYR,superfamily_Kinase_like,HMMPfam_ig,PatternScan_PROTEIN_KINASE_ATP,superfamily_SSF48726	-	no_errors	NA	NA	NA	NA	NA	NA	NA	NA	NA
KRT18P40	0	genome.wustl.edu	36	19	20937274	20937275	+	RNA	INS	-	-	G	rs35599227		TCGA-AB-2930-03A-01W-0761-09	TCGA-AB-2930-11A-01W-0745-08	-	-	-	G	-	-	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	0f30992e-555b-429e-89d5-7a7edc5934d7	4ab787f8-8273-4436-82d6-0c3a3c805bde	19	20937274	20937275	-	G	INS	KRT18P40	XR_017288.1	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.997:1.000	-	-	-	pseudogene	11	1	8.33	14	7	33.33	0	0	0.00