Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name start stop reference variant type gene_name transcript_name transcript_species transcript_source transcript_version strand transcript_status trv_type c_position amino_acid_change ucsc_cons domain all_domains deletion_substructures transcript_error NormalRefReads_WU NormalVarReads_WU NormalVAF_WU TumorRefReads_WU TumorVarReads_WU TumorVAF_WU RNARefReads_WU RNAVarReads_WU RNAVAF_WU MT-CO3 0 genome.wustl.edu 36 MT 9731 9731 + Missense_Mutation SNP T T C TCGA-AB-2927-03A-01W-0755-09 TCGA-AB-2927-11A-01W-0755-09 T T T C T T Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 46bbb19d-2bc9-4f0a-ac4e-cad7327ca142 26459589-446d-4b29-90b8-e2d482fe291b MT 9731 9731 T C SNP MT-CO3 ENST00000362079 human ensembl 54_36p +1 known missense c.524 p.L175P NULL HMMPfam_COX3,superfamily_CytC_oxdse_III HMMPfam_COX3,superfamily_CytC_oxdse_III - no_stop_codon:bad_bp_length_for_coding_region 2658 72 2.62 348 1200 77.32 NA NA NA MT-ND5 0 genome.wustl.edu 36 MT 13370 13370 + Missense_Mutation SNP T T C TCGA-AB-2927-03A-01W-0755-09 TCGA-AB-2927-11A-01W-0755-09 T T T C T T Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 46bbb19d-2bc9-4f0a-ac4e-cad7327ca142 26459589-446d-4b29-90b8-e2d482fe291b MT 13370 13370 T C SNP MT-ND5 ENST00000361567 human ensembl 54_36p +1 known missense c.1033 p.S345P NULL HMMPfam_Oxidored_q1 HMMPfam_Oxidored_q1_N,HMMPfam_Oxidored_q1,HMMPfam_NADH5_C - no_errors 1701 13 0.75 962 128 11.70 NA NA NA MT-ND5 0 genome.wustl.edu 36 MT 13763 13763 + Missense_Mutation SNP T T C TCGA-AB-2927-03A-01W-0755-09 TCGA-AB-2927-11A-01W-0755-09 T T T C T T Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 46bbb19d-2bc9-4f0a-ac4e-cad7327ca142 26459589-446d-4b29-90b8-e2d482fe291b MT 13763 13763 T C SNP MT-ND5 ENST00000361567 human ensembl 54_36p +1 known missense c.1426 p.S476P NULL HMMPfam_NADH5_C HMMPfam_Oxidored_q1_N,HMMPfam_Oxidored_q1,HMMPfam_NADH5_C - no_errors 801 21 2.52 242 215 47.05 NA NA NA CXorf58 0 genome.wustl.edu 36 X 23863381 23863381 + Nonsense_Mutation SNP C C T TCGA-AB-2927-03A-01W-0755-09 TCGA-AB-2927-11A-01W-0755-09 C C C T C C Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 46bbb19d-2bc9-4f0a-ac4e-cad7327ca142 26459589-446d-4b29-90b8-e2d482fe291b X 23863381 23863381 C T SNP CXorf58 NM_152761.1 human genbank 54_36p +1 predicted nonsense c.703 p.R235* 0.770 NULL NULL - no_errors 131 2 1.49 79 43 35.25 NA NA NA SRPX 0 genome.wustl.edu 36 X 37901198 37901198 + Silent SNP C C T TCGA-AB-2927-03A-01W-0755-09 TCGA-AB-2927-11A-01W-0755-09 C C C T C C Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 46bbb19d-2bc9-4f0a-ac4e-cad7327ca142 26459589-446d-4b29-90b8-e2d482fe291b X 37901198 37901198 C T SNP SRPX NM_006307.3 human genbank 54_36p -1 provisional silent c.984 p.T328 0.437 NULL HMMPfam_Sushi,HMMSmart_SM00032,HMMPfam_HYR,superfamily_Complement control module/SCR domain - no_errors 132 1 0.75 95 42 30.43 3 0 0.00 AKR7A2 0 genome.wustl.edu 36 1 19505127 19505127 + Missense_Mutation SNP C C G TCGA-AB-2927-03A-01W-0755-09 TCGA-AB-2927-11A-01W-0755-09 C C C G C C Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 46bbb19d-2bc9-4f0a-ac4e-cad7327ca142 26459589-446d-4b29-90b8-e2d482fe291b 1 19505127 19505127 C G SNP AKR7A2 NM_003689.2 human genbank 54_36p -1 validated missense c.890 p.R297P 0.998 superfamily_Aldo/ket_red HMMPfam_Aldo_ket_red,superfamily_Aldo/ket_red - no_errors 56 0 0.00 10 13 56.52 22 13 37.14 SLFNL1 0 genome.wustl.edu 36 1 41256259 41256259 + Missense_Mutation SNP C C T TCGA-AB-2927-03A-01W-0755-09 TCGA-AB-2927-11A-01W-0755-09 C C C T C C Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 46bbb19d-2bc9-4f0a-ac4e-cad7327ca142 26459589-446d-4b29-90b8-e2d482fe291b 1 41256259 41256259 C T SNP SLFNL1 NM_144990.2 human genbank 54_36p -1 provisional missense c.592 p.D198N 0.971 NULL HMMPfam_AAA_4 - no_errors 18 0 0.00 28 14 33.33 6 4 40.00 PRELP 0 genome.wustl.edu 36 1 201719493 201719493 + Silent SNP C C A TCGA-AB-2927-03A-01W-0755-09 TCGA-AB-2927-11A-01W-0755-09 C C C A C C Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 46bbb19d-2bc9-4f0a-ac4e-cad7327ca142 26459589-446d-4b29-90b8-e2d482fe291b 1 201719493 201719493 C A SNP PRELP NM_002725.3 human genbank 54_36p +1 reviewed silent c.558 p.I186 1.000 HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00364,superfamily_L domain-like HMMPfam_LRRNT,HMMSmart_SM00013,HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00364,superfamily_L domain-like - no_errors 64 1 1.52 35 22 38.60 NA NA NA TTN 0 genome.wustl.edu 36 2 179193024 179193024 + Missense_Mutation SNP A A C TCGA-AB-2927-03A-01W-0755-09 TCGA-AB-2927-11A-01W-0755-09 A A A C A A Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 46bbb19d-2bc9-4f0a-ac4e-cad7327ca142 26459589-446d-4b29-90b8-e2d482fe291b 2 179193024 179193024 A C SNP TTN ENST00000375038 human ensembl 54_36p -1 known missense c.34311 p.D11437E 1.000 HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Concanavalin A-like lectins/glucanases,superfamily_WD40 repeat-like,HMMPfam_I-set,superfamily_Immunoglobulin,superfamily_vWA-like,superfamily_Positive stranded ssRNA viruses HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_IG_MHC,HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,HMMPfam_PPAK,PatternScan_PROTEIN_KINASE_TYR,superfamily_Fibronectin type III,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Protein kinase-like (PK-like),superfamily_WD40 repeat-like,HMMPfam_I-set,HMMPfam_ig,HMMPfam_Titin_Z,HMMPfam_Pkinase,PatternScan_FGGY_KINASES_1,PatternScan_PEROXIDASE_1,superfamily_Immunoglobulin,superfamily_vWA-like,superfamily_Positive stranded ssRNA viruses - no_errors 109 3 2.68 70 33 32.04 3 0 0.00 MST1R 0 genome.wustl.edu 36 3 49911341 49911341 + Missense_Mutation SNP C C T TCGA-AB-2927-03A-01W-0755-09 TCGA-AB-2927-11A-01W-0755-09 C C C T C C Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 46bbb19d-2bc9-4f0a-ac4e-cad7327ca142 26459589-446d-4b29-90b8-e2d482fe291b 3 49911341 49911341 C T SNP MST1R NM_002447.2 human genbank 54_36p -1 validated missense c.1511 p.R504H 1.000 HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain,HMMPfam_PSI,HMMSmart_SM00220,HMMPfam_TIG,HMMSmart_SM00429,HMMSmart_SM00423,PatternScan_PROTEIN_KINASE_TYR,superfamily_Protein kinase-like (PK-like),superfamily_E set domains,superfamily_Plexin repeat,PatternScan_PROTEIN_KINASE_ATP - no_errors 22 1 4.35 17 9 34.62 8 3 27.27 HIST1H3D 0 genome.wustl.edu 36 6 26305375 26305375 + Nonsense_Mutation SNP T T A TCGA-AB-2927-03A-01W-0755-09 TCGA-AB-2927-11A-01W-0755-09 T T T A T T Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 46bbb19d-2bc9-4f0a-ac4e-cad7327ca142 26459589-446d-4b29-90b8-e2d482fe291b 6 26305375 26305375 T A SNP HIST1H3D ENST00000377831 human ensembl 54_36p -1 known nonsense c.484 p.R162* 1.000 NULL HMMSmart_SM00414,PatternScan_HISTONE_H2A,HMMPfam_Histone,superfamily_Histone-fold - no_errors 18 0 0.00 21 11 34.38 61 38 38.00 KCNU1 0 genome.wustl.edu 36 8 36899260 36899260 + Silent SNP G G A TCGA-AB-2927-03A-01W-0755-09 TCGA-AB-2927-11A-01W-0755-09 G G G A G G Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 46bbb19d-2bc9-4f0a-ac4e-cad7327ca142 26459589-446d-4b29-90b8-e2d482fe291b 8 36899260 36899260 G A SNP KCNU1 NM_001031836.2 human genbank 54_36p +1 validated silent c.2691 p.T897 0.932 NULL HMMPfam_BK_channel_a,HMMPfam_Ion_trans,superfamily_NAD(P)-bd,superfamily_SSF81324 - no_errors 80 1 1.23 71 58 44.96 NA NA NA DBC1 0 genome.wustl.edu 36 9 121010841 121010841 + Silent SNP G G A TCGA-AB-2927-03A-01W-0755-09 TCGA-AB-2927-11A-01W-0755-09 G G G A G G Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 46bbb19d-2bc9-4f0a-ac4e-cad7327ca142 26459589-446d-4b29-90b8-e2d482fe291b 9 121010841 121010841 G A SNP DBC1 NM_014618.2 human genbank 54_36p -1 validated silent c.1122 p.P374 1.000 NULL HMMSmart_SM00457 - no_errors 95 1 1.04 131 72 35.47 NA NA NA TACC2 0 genome.wustl.edu 36 10 123960274 123960274 + Missense_Mutation SNP C C T TCGA-AB-2927-03A-01W-0755-09 TCGA-AB-2927-11A-01W-0755-09 C C C T C C Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 46bbb19d-2bc9-4f0a-ac4e-cad7327ca142 26459589-446d-4b29-90b8-e2d482fe291b 10 123960274 123960274 C T SNP TACC2 NM_206862.2 human genbank 54_36p +1 reviewed missense c.6344 p.T2115M 0.962 NULL HMMPfam_TACC - no_errors 100 2 1.94 50 24 32.43 NA NA NA OR4C6 0 genome.wustl.edu 36 11 55189860 55189860 + Silent SNP G G A TCGA-AB-2927-03A-01W-0755-09 TCGA-AB-2927-11A-01W-0755-09 G G G A G G Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 46bbb19d-2bc9-4f0a-ac4e-cad7327ca142 26459589-446d-4b29-90b8-e2d482fe291b 11 55189860 55189860 G A SNP OR4C6 NM_001004704.1 human genbank 54_36p +1 provisional silent c.642 p.A214 0.001 HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like - no_errors 113 4 3.39 121 79 39.50 2 0 0.00 DAGLA 0 genome.wustl.edu 36 11 61259672 61259672 + Silent SNP C C A TCGA-AB-2927-03A-01W-0755-09 TCGA-AB-2927-11A-01W-0755-09 C C C A C C Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 46bbb19d-2bc9-4f0a-ac4e-cad7327ca142 26459589-446d-4b29-90b8-e2d482fe291b 11 61259672 61259672 C A SNP DAGLA NM_006133.1 human genbank 54_36p +1 validated silent c.1192 p.R398 1.000 HMMPfam_Lipase_3,superfamily_SSF53474 HMMPfam_Lipase_3,PatternScan_LIPASE_SER,superfamily_SSF53474 - no_errors 24 0 0.00 18 4 17.39 1 3 75.00 SH2B3 0 genome.wustl.edu 36 12 110369919 110369919 + Missense_Mutation SNP T T A TCGA-AB-2927-03A-01W-0755-09 TCGA-AB-2927-11A-01W-0755-09 T T T A T T Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 46bbb19d-2bc9-4f0a-ac4e-cad7327ca142 26459589-446d-4b29-90b8-e2d482fe291b 12 110369919 110369919 T A SNP SH2B3 NM_005475.2 human genbank 54_36p +1 validated missense c.1313 p.L438H 0.965 HMMPfam_SH2,HMMSmart_SM00252,superfamily_SH2 domain HMMPfam_SH2,HMMSmart_SM00252,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_Phe_ZIP,superfamily_Phenylalanine zipper,superfamily_PH domain-like,superfamily_SH2 domain - no_errors 37 0 0.00 17 19 52.78 57 44 43.56 DIS3 0 genome.wustl.edu 36 13 72235718 72235718 + Missense_Mutation SNP T T C TCGA-AB-2927-03A-01W-0755-09 TCGA-AB-2927-11A-01W-0755-09 T T T C T T Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 46bbb19d-2bc9-4f0a-ac4e-cad7327ca142 26459589-446d-4b29-90b8-e2d482fe291b 13 72235718 72235718 T C SNP DIS3 NM_014953.1 human genbank 54_36p -1 validated missense c.1999 p.M667V 1.000 HMMPfam_RNB HMMPfam_RNB,PatternScan_RIBONUCLEASE_II,HMMSmart_SM00670,superfamily_PIN domain-like - no_errors 54 0 0.00 85 50 37.04 15 6 28.57 PRKD1 0 genome.wustl.edu 36 14 29163175 29163175 + Silent SNP G G A TCGA-AB-2927-03A-01W-0755-09 TCGA-AB-2927-11A-01W-0755-09 G G G A G G Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 46bbb19d-2bc9-4f0a-ac4e-cad7327ca142 26459589-446d-4b29-90b8-e2d482fe291b 14 29163175 29163175 G A SNP PRKD1 NM_002742.2 human genbank 54_36p -1 validated silent c.1839 p.I613 0.995 HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase HMMPfam_PH,HMMSmart_PH,HMMPfam_C1_1,HMMSmart_C1,PatternScan_ZF_DAG_PE_1,HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,superfamily_SSF50729,superfamily_SSF57889 - no_errors 104 2 1.87 135 100 42.55 1 0 0.00 SLC24A4 0 genome.wustl.edu 36 14 91978270 91978270 + Missense_Mutation SNP G G C TCGA-AB-2927-03A-01W-0755-09 TCGA-AB-2927-11A-01W-0755-09 G G G C G G Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 46bbb19d-2bc9-4f0a-ac4e-cad7327ca142 26459589-446d-4b29-90b8-e2d482fe291b 14 91978270 91978270 G C SNP SLC24A4 NM_153646.2 human genbank 54_36p +1 validated missense c.427 p.G143R 1.000 HMMPfam_Na_Ca_ex HMMPfam_Na_Ca_ex - no_errors 47 3 6.00 79 27 25.47 NA NA NA MOK 0 genome.wustl.edu 36 14 101769807 101769807 + Silent SNP G G A TCGA-AB-2927-03A-01W-0755-09 TCGA-AB-2927-11A-01W-0755-09 G G G A G G Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 46bbb19d-2bc9-4f0a-ac4e-cad7327ca142 26459589-446d-4b29-90b8-e2d482fe291b 14 101769807 101769807 G A SNP RAGE NM_014226.1 human genbank 54_36p -1 provisional silent c.663 p.P221 0.089 HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase - no_errors 126 1 0.78 205 94 31.44 2 0 0.00 ST8SIA2 0 genome.wustl.edu 36 15 90778526 90778526 + Silent SNP C C T TCGA-AB-2927-03A-01W-0755-09 TCGA-AB-2927-11A-01W-0755-09 C C C T C C Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 46bbb19d-2bc9-4f0a-ac4e-cad7327ca142 26459589-446d-4b29-90b8-e2d482fe291b 15 90778526 90778526 C T SNP ST8SIA2 NM_006011.3 human genbank 54_36p +1 reviewed silent c.207 p.D69 1.000 NULL HMMPfam_Glyco_transf_29 - no_errors 66 1 1.47 79 41 34.17 NA NA NA CHST6 0 genome.wustl.edu 36 16 74070660 74070660 + Missense_Mutation SNP C C G TCGA-AB-2927-03A-01W-0755-09 TCGA-AB-2927-11A-01W-0755-09 C C C G C C Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 46bbb19d-2bc9-4f0a-ac4e-cad7327ca142 26459589-446d-4b29-90b8-e2d482fe291b 16 74070660 74070660 C G SNP CHST6 NM_021615.4 human genbank 54_36p -1 provisional missense c.568 p.D190H 0.996 HMMPfam_Sulfotransfer_1,superfamily_SSF52540 HMMPfam_Sulfotransfer_1,superfamily_SSF52540 - no_errors 16 0 0.00 9 4 30.77 NA NA NA CRISPLD2 0 genome.wustl.edu 36 16 83463616 83463616 + Splice_Site SNP G G A TCGA-AB-2927-03A-01W-0755-09 TCGA-AB-2927-11A-01W-0755-09 G G G A G G Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 46bbb19d-2bc9-4f0a-ac4e-cad7327ca142 26459589-446d-4b29-90b8-e2d482fe291b 16 83463616 83463616 G A SNP CRISPLD2 NM_031476.3 human genbank 54_36p +1 validated splice_site c.981+1 e8+1 0.998 - - - no_errors 93 0 0.00 99 56 36.13 2 0 0.00 ASXL1 0 genome.wustl.edu 36 20 30485895 30485895 + Splice_Site SNP G G T TCGA-AB-2927-03A-01W-0755-09 TCGA-AB-2927-11A-01W-0755-09 G G G T G G Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 46bbb19d-2bc9-4f0a-ac4e-cad7327ca142 26459589-446d-4b29-90b8-e2d482fe291b 20 30485895 30485895 G T SNP ASXL1 NM_015338.4 human genbank 54_36p +1 reviewed splice_site c.1720-1 e13-1 1.000 - - - no_errors 16 0 0.00 39 20 33.90 14 23 62.16 KRTAP24-1 0 genome.wustl.edu 36 21 30576841 30576841 + Missense_Mutation SNP G G A TCGA-AB-2927-03A-01W-0755-09 TCGA-AB-2927-11A-01W-0755-09 G G G A G G Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 46bbb19d-2bc9-4f0a-ac4e-cad7327ca142 26459589-446d-4b29-90b8-e2d482fe291b 21 30576841 30576841 G A SNP KRTAP24-1 NM_001085455.1 human genbank 54_36p -1 validated missense c.281 p.P94L 0.980 HMMPfam_PMG HMMPfam_PMG - no_errors 78 4 4.88 121 69 36.32 NA NA NA RUNX1 0 genome.wustl.edu 36 21 35153653 35153653 + Nonsense_Mutation SNP G G A TCGA-AB-2927-03A-01W-0755-09 TCGA-AB-2927-11A-01W-0755-09 G G G A G G Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 46bbb19d-2bc9-4f0a-ac4e-cad7327ca142 26459589-446d-4b29-90b8-e2d482fe291b 21 35153653 35153653 G A SNP RUNX1 NM_001754.2 human genbank 54_36p -1 reviewed nonsense c.601 p.R201* 1.000 superfamily_p53-like transcription factors,HMMPfam_Runt superfamily_p53-like transcription factors,HMMPfam_Runt,HMMPfam_RunxI - no_errors 106 4 3.60 48 24 33.33 437 335 43.34 RUNX1 0 genome.wustl.edu 36 21 35174746 35174746 + Missense_Mutation SNP C C A TCGA-AB-2927-03A-01W-0755-09 TCGA-AB-2927-11A-01W-0755-09 C C C A C C Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 46bbb19d-2bc9-4f0a-ac4e-cad7327ca142 26459589-446d-4b29-90b8-e2d482fe291b 21 35174746 35174746 C A SNP RUNX1 NM_001754.2 human genbank 54_36p -1 reviewed missense c.486 p.R162S 1.000 superfamily_p53-like transcription factors,HMMPfam_Runt superfamily_p53-like transcription factors,HMMPfam_Runt,HMMPfam_RunxI - no_errors 53 0 0.00 8 6 42.86 292 399 57.66 SUMO2 0 genome.wustl.edu 36 17 70682466 70682467 + Frame_Shift_Ins INS - - TA TCGA-AB-2927-03A-01W-0755-09 TCGA-AB-2927-11A-01W-0755-09 - - - TA - - Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 46bbb19d-2bc9-4f0a-ac4e-cad7327ca142 26459589-446d-4b29-90b8-e2d482fe291b 17 70682466 70682467 - TA INS SUMO2 NM_006937.1 human genbank 54_36p -1 reviewed frame_shift_ins c.201_200 p.N68fs 1.000:1.000 HMMPfam_ubiquitin,HMMSmart_SM00213,superfamily_Ubiquitin-like HMMPfam_ubiquitin,HMMSmart_SM00213,superfamily_Ubiquitin-like - no_errors 125 1 0.79 38 22 36.67 4 1 20.00 TCF4 0 genome.wustl.edu 36 18 51047117 51047118 + Frame_Shift_Ins INS - - G TCGA-AB-2927-03A-01W-0755-09 TCGA-AB-2927-11A-01W-0755-09 - - - G - - Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 46bbb19d-2bc9-4f0a-ac4e-cad7327ca142 26459589-446d-4b29-90b8-e2d482fe291b 18 51047117 51047118 - G INS TCF4 NM_001083962.1 human genbank 54_36p -1 reviewed frame_shift_ins c.1838_1837 p.Q613fs 1.000:1.000 HMMPfam_HLH,HMMSmart_HLH,superfamily_HLH_basic HMMPfam_HLH,HMMSmart_HLH,superfamily_HLH_basic - no_errors 64 1 1.54 50 18 26.47 100 81 44.75