Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	NormalRefReads_WU	NormalVarReads_WU	NormalVAF_WU	TumorRefReads_WU	TumorVarReads_WU	TumorVAF_WU	RNARefReads_WU	RNAVarReads_WU	RNAVAF_WU
ASB11	0	genome.wustl.edu	36	X	15216005	15216005	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2923-03A-01W-0745-08	TCGA-AB-2923-11A-01W-0745-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	26973c94-f1c1-46a1-b753-4f561fd7d451	872c532a-f3d4-4cb5-8ebd-09ff6c9d5cdd	X	15216005	15216005	G	A	SNP	ASB11	NM_080873.1	human	genbank	54_36p	-1	reviewed	missense	c.766	p.R256C	0.006	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK	HMMPfam_SOCS_box,HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK	-	no_errors	30	2	6.25	27	8	22.22	NA	NA	NA
NRAS	0	genome.wustl.edu	36	1	115058052	115058052	+	Missense_Mutation	SNP	T	T	C	rs11554290		TCGA-AB-2923-03A-01W-0745-08	TCGA-AB-2923-11A-01W-0745-08	T	T	T	C	T	T	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	26973c94-f1c1-46a1-b753-4f561fd7d451	872c532a-f3d4-4cb5-8ebd-09ff6c9d5cdd	1	115058052	115058052	T	C	SNP	NRAS	NM_002524.3	human	genbank	54_36p	-1	reviewed	missense	c.182	p.Q61R	1.000	HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors	97	2	2.00	73	14	16.09	NA	NA	NA
CGN	0	genome.wustl.edu	36	1	149773088	149773088	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2923-03A-01W-0745-08	TCGA-AB-2923-11A-01W-0745-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	26973c94-f1c1-46a1-b753-4f561fd7d451	872c532a-f3d4-4cb5-8ebd-09ff6c9d5cdd	1	149773088	149773088	G	A	SNP	CGN	NM_020770.2	human	genbank	54_36p	+1	validated	missense	c.2756	p.R919Q	1.000	NULL	HMMPfam_Myosin_tail_1	-	no_errors	44	1	2.22	25	22	46.81	NA	NA	NA
CR1	0	genome.wustl.edu	36	1	205851951	205851951	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2923-03A-01W-0745-08	TCGA-AB-2923-11A-01W-0745-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	26973c94-f1c1-46a1-b753-4f561fd7d451	872c532a-f3d4-4cb5-8ebd-09ff6c9d5cdd	1	205851951	205851951	G	A	SNP	CR1	NM_000651.3	human	genbank	54_36p	+1	reviewed	missense	c.6517	p.V2173M	0.019	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain	-	no_errors	59	3	4.76	37	39	51.32	NA	NA	NA
RNF25	0	genome.wustl.edu	36	2	219241639	219241639	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2923-03A-01W-0745-08	TCGA-AB-2923-11A-01W-0745-08	G	G	G	T	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	26973c94-f1c1-46a1-b753-4f561fd7d451	872c532a-f3d4-4cb5-8ebd-09ff6c9d5cdd	2	219241639	219241639	G	T	SNP	RNF25	NM_022453.2	human	genbank	54_36p	-1	reviewed	missense	c.49	p.P17T	1.000	HMMPfam_RWD	HMMSmart_SM00184,HMMPfam_RWD,HMMSmart_SM00591,superfamily_UBC-like,HMMPfam_zf-C3HC4,superfamily_RING/U-box	-	no_errors	74	0	0.00	54	39	41.94	NA	NA	NA
CCL20	0	genome.wustl.edu	36	2	228388516	228388516	+	Missense_Mutation	SNP	T	T	A			TCGA-AB-2923-03A-01W-0745-08	TCGA-AB-2923-11A-01W-0745-08	T	T	T	A	T	T	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	26973c94-f1c1-46a1-b753-4f561fd7d451	872c532a-f3d4-4cb5-8ebd-09ff6c9d5cdd	2	228388516	228388516	T	A	SNP	CCL20	NM_004591.1	human	genbank	54_36p	+1	validated	missense	c.179	p.I60N	0.996	PatternScan_SMALL_CYTOKINES_CC,HMMPfam_IL8,HMMSmart_SM00199,superfamily_Interleukin 8-like chemokines	PatternScan_SMALL_CYTOKINES_CC,HMMPfam_IL8,HMMSmart_SM00199,superfamily_Interleukin 8-like chemokines	-	no_errors	73	3	3.95	42	35	45.45	NA	NA	NA
ACPL2	0	genome.wustl.edu	36	3	142493844	142493844	+	Missense_Mutation	SNP	T	T	G			TCGA-AB-2923-03A-01W-0745-08	TCGA-AB-2923-11A-01W-0745-08	T	T	T	G	T	T	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	26973c94-f1c1-46a1-b753-4f561fd7d451	872c532a-f3d4-4cb5-8ebd-09ff6c9d5cdd	3	142493844	142493844	T	G	SNP	ACPL2	NM_001037172.1	human	genbank	54_36p	+1	validated	missense	c.550	p.Y184D	1.000	HMMPfam_Acid_phosphat_A,superfamily_Phosphoglycerate mutase-like	HMMPfam_Acid_phosphat_A,superfamily_Phosphoglycerate mutase-like	-	no_errors	82	0	0.00	40	25	38.46	NA	NA	NA
TET2	0	genome.wustl.edu	36	4	106376196	106376196	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AB-2923-03A-01W-0745-08	TCGA-AB-2923-11A-01W-0745-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	26973c94-f1c1-46a1-b753-4f561fd7d451	872c532a-f3d4-4cb5-8ebd-09ff6c9d5cdd	4	106376196	106376196	C	T	SNP	TET2	NM_017628.1	human	genbank	54_36p	+1	validated	nonsense	c.1648	p.R550*	0.001	NULL	NULL	-	no_errors	118	4	3.25	71	49	40.50	NA	NA	NA
MEGF10	0	genome.wustl.edu	36	5	126702791	126702791	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2923-03A-01W-0745-08	TCGA-AB-2923-11A-01W-0745-08	G	G	G	T	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	26973c94-f1c1-46a1-b753-4f561fd7d451	872c532a-f3d4-4cb5-8ebd-09ff6c9d5cdd	5	126702791	126702791	G	T	SNP	MEGF10	NM_032446.2	human	genbank	54_36p	+1	validated	missense	c.197	p.W66L	1.000	HMMPfam_EMI	HMMPfam_Laminin_EGF,HMMSmart_SM00180,HMMSmart_SM00181,superfamily_Plant inhibitors of proteinases and amylases,HMMPfam_EMI,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_2,superfamily_EGF/Laminin	-	no_errors	169	8	4.52	101	66	39.29	NA	NA	NA
CAGE1	0	genome.wustl.edu	36	6	7324007	7324007	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2923-03A-01W-0745-08	TCGA-AB-2923-11A-01W-0745-08	G	G	G	T	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	26973c94-f1c1-46a1-b753-4f561fd7d451	872c532a-f3d4-4cb5-8ebd-09ff6c9d5cdd	6	7324007	7324007	G	T	SNP	CAGE1	NM_205864.2	human	genbank	54_36p	-1	validated	missense	c.121	p.Q41K	0.001	NULL	NULL	-	no_errors	91	4	4.21	70	57	44.53	NA	NA	NA
PGBD1	0	genome.wustl.edu	36	6	28377655	28377655	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2923-03A-01W-0745-08	TCGA-AB-2923-11A-01W-0745-08	A	A	A	G	A	A	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	26973c94-f1c1-46a1-b753-4f561fd7d451	872c532a-f3d4-4cb5-8ebd-09ff6c9d5cdd	6	28377655	28377655	A	G	SNP	PGBD1	NM_032507.2	human	genbank	54_36p	+1	reviewed	missense	c.2045	p.N682S	0.978	NULL	HMMPfam_SCAN,HMMSmart_SCAN	-	no_errors	126	4	3.08	65	74	53.24	NA	NA	NA
RPS10	0	genome.wustl.edu	36	6	34500485	34500485	+	Silent	SNP	C	C	T			TCGA-AB-2923-03A-01W-0745-08	TCGA-AB-2923-11A-01W-0745-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	26973c94-f1c1-46a1-b753-4f561fd7d451	872c532a-f3d4-4cb5-8ebd-09ff6c9d5cdd	6	34500485	34500485	C	T	SNP	RPS10	NM_001014.3	human	genbank	54_36p	-1	reviewed	silent	c.261	p.P87	0.757	HMMPfam_S10_plectin	HMMPfam_S10_plectin	-	no_errors	40	0	0.00	28	24	46.15	NA	NA	NA
DST	0	genome.wustl.edu	36	6	56588852	56588852	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2923-03A-01W-0745-08	TCGA-AB-2923-11A-01W-0745-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	26973c94-f1c1-46a1-b753-4f561fd7d451	872c532a-f3d4-4cb5-8ebd-09ff6c9d5cdd	6	56588852	56588852	C	T	SNP	DST	NM_001723.1	human	genbank	54_36p	-1	reviewed	missense	c.7372	p.E2458K	1.000	HMMSmart_PLEC,superfamily_SSF75399	HMMPfam_Plectin,HMMSmart_PLEC,HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin,superfamily_SSF75399	-	no_errors	65	3	4.29	43	26	37.14	NA	NA	NA
FAM82B	0	genome.wustl.edu	36	8	87588410	87588410	+	Silent	SNP	A	A	G			TCGA-AB-2923-03A-01W-0745-08	TCGA-AB-2923-11A-01W-0745-08	A	A	A	G	A	A	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	26973c94-f1c1-46a1-b753-4f561fd7d451	872c532a-f3d4-4cb5-8ebd-09ff6c9d5cdd	8	87588410	87588410	A	G	SNP	FAM82B	NM_016033.2	human	genbank	54_36p	-1	validated	silent	c.177	p.A59	0.989	NULL	superfamily_Prenyl_trans	-	no_errors	87	1	1.14	43	46	51.69	NA	NA	NA
PKD2L1	0	genome.wustl.edu	36	10	102038158	102038158	+	Silent	SNP	C	C	T			TCGA-AB-2923-03A-01W-0745-08	TCGA-AB-2923-11A-01W-0745-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	26973c94-f1c1-46a1-b753-4f561fd7d451	872c532a-f3d4-4cb5-8ebd-09ff6c9d5cdd	10	102038158	102038158	C	T	SNP	PKD2L1	NM_016112.2	human	genbank	54_36p	-1	reviewed	silent	c.2403	p.T801	0.000	NULL	HMMPfam_PKD_channel,superfamily_Voltage-gated potassium channels	-	no_errors	79	3	3.66	50	41	45.05	NA	NA	NA
OR5W2	0	genome.wustl.edu	36	11	55438204	55438204	+	Missense_Mutation	SNP	A	A	T			TCGA-AB-2923-03A-01W-0745-08	TCGA-AB-2923-11A-01W-0745-08	A	A	A	T	A	A	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	26973c94-f1c1-46a1-b753-4f561fd7d451	872c532a-f3d4-4cb5-8ebd-09ff6c9d5cdd	11	55438204	55438204	A	T	SNP	OR5W2	NM_001001960.1	human	genbank	54_36p	-1	provisional	missense	c.431	p.L144H	0.011	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors	100	4	3.85	42	49	53.85	NA	NA	NA
STRC	0	genome.wustl.edu	36	15	41697471	41697471	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2923-03A-01W-0745-08	TCGA-AB-2923-11A-01W-0745-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	26973c94-f1c1-46a1-b753-4f561fd7d451	872c532a-f3d4-4cb5-8ebd-09ff6c9d5cdd	15	41697471	41697471	G	A	SNP	STRC	NM_153700.2	human	genbank	54_36p	-1	reviewed	missense	c.440	p.A147V	0.996	NULL	NULL	-	no_errors	61	0	0.00	45	14	23.73	NA	NA	NA
PPL	0	genome.wustl.edu	36	16	4875050	4875050	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2923-03A-01W-0745-08	TCGA-AB-2923-11A-01W-0745-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	26973c94-f1c1-46a1-b753-4f561fd7d451	872c532a-f3d4-4cb5-8ebd-09ff6c9d5cdd	16	4875050	4875050	G	A	SNP	PPL	NM_002705.4	human	genbank	54_36p	-1	reviewed	missense	c.3607	p.R1203W	0.992	NULL	HMMPfam_Plectin,HMMSmart_SM00250,HMMSmart_SM00150,superfamily_Spectrin repeat,superfamily_Plakin repeat	-	no_errors	42	1	2.33	12	9	42.86	NA	NA	NA
TMEM104	0	genome.wustl.edu	36	17	70303340	70303340	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AB-2923-03A-01W-0745-08	TCGA-AB-2923-11A-01W-0745-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	26973c94-f1c1-46a1-b753-4f561fd7d451	872c532a-f3d4-4cb5-8ebd-09ff6c9d5cdd	17	70303340	70303340	C	T	SNP	TMEM104	NM_017728.3	human	genbank	54_36p	+1	validated	nonsense	c.610	p.R204*	0.969	NULL	HMMPfam_Aa_trans	-	no_errors	32	1	2.94	23	26	53.06	NA	NA	NA
ZNF420	0	genome.wustl.edu	36	19	42310451	42310451	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AB-2923-03A-01W-0745-08	TCGA-AB-2923-11A-01W-0745-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	26973c94-f1c1-46a1-b753-4f561fd7d451	872c532a-f3d4-4cb5-8ebd-09ff6c9d5cdd	19	42310451	42310451	C	T	SNP	ZNF420	NM_144689.3	human	genbank	54_36p	+1	provisional	nonsense	c.718	p.R240*	0.002	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors	73	3	3.95	32	36	52.94	NA	NA	NA
FCGBP	0	genome.wustl.edu	36	19	45075876	45075876	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2923-03A-01W-0745-08	TCGA-AB-2923-11A-01W-0745-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	26973c94-f1c1-46a1-b753-4f561fd7d451	872c532a-f3d4-4cb5-8ebd-09ff6c9d5cdd	19	45075876	45075876	C	T	SNP	FCGBP	NM_003890.2	human	genbank	54_36p	-1	validated	missense	c.9574	p.A3192T	0.014	superfamily_Cysrich_TIL,HMMPfam_TIL	HMMSmart_VWC,HMMPfam_VWD,HMMSmart_VWD,superfamily_Cysrich_TIL,HMMPfam_TIL_assoc,HMMSmart_FOLN,HMMPfam_C8,HMMPfam_TIL	-	no_errors	29	1	3.33	28	17	37.78	NA	NA	NA
IGLV3-22	0	genome.wustl.edu	36	22	21377140	21377140	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2923-03A-01W-0745-08	TCGA-AB-2923-11A-01W-0745-08	C	C	C	G	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	26973c94-f1c1-46a1-b753-4f561fd7d451	872c532a-f3d4-4cb5-8ebd-09ff6c9d5cdd	22	21377140	21377140	C	G	SNP	IGLV3-22	ENST00000390307	human	ensembl	54_36p	+1	known	missense	c.178	p.Q60E	0.659	HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin	HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin	-	no_stop_codon	50	1	1.85	37	27	42.19	NA	NA	NA
TET2	0	genome.wustl.edu	36	4	106377418	106377419	+	Frame_Shift_Ins	INS	-	-	A			TCGA-AB-2923-03A-01W-0745-08	TCGA-AB-2923-11A-01W-0745-08	-	-	-	A	-	-	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	26973c94-f1c1-46a1-b753-4f561fd7d451	872c532a-f3d4-4cb5-8ebd-09ff6c9d5cdd	4	106377418	106377419	-	A	INS	TET2	NM_017628.1	human	genbank	54_36p	+1	validated	frame_shift_ins	c.2870_2871	p.Q958fs	1.000:0.960	NULL	NULL	-	no_errors	71	1	1.39	31	34	52.31	NA	NA	NA
MBOAT1	0	genome.wustl.edu	36	6	20210600	20210600	+	Frame_Shift_Del	DEL	T	T	-			TCGA-AB-2923-03A-01W-0745-08	TCGA-AB-2923-11A-01W-0745-08	T	T	T	-	T	T	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	26973c94-f1c1-46a1-b753-4f561fd7d451	872c532a-f3d4-4cb5-8ebd-09ff6c9d5cdd	6	20210600	20210600	T	-	DEL	MBOAT1	NM_001080480.1	human	genbank	54_36p	-1	provisional	frame_shift_del	c.1384	p.I462fs	0.993	NULL	HMMPfam_MBOAT	-	no_errors	80	4	4.71	38	31	42.47	NA	NA	NA