Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	NormalRefReads_WU	NormalVarReads_WU	NormalVAF_WU	TumorRefReads_WU	TumorVarReads_WU	TumorVAF_WU	RNARefReads_WU	RNAVarReads_WU	RNAVAF_WU
STAG2	0	genome.wustl.edu	36	X	123019509	123019509	+	Splice_Site	SNP	G	G	A			TCGA-AB-2871-03A-01W-0732-08	TCGA-AB-2871-11A-01W-0732-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	3e8efa46-6045-4be1-b41b-e7b98f165d24	6c7c2063-37fc-45fc-8401-6169345b8c05	X	123019509	123019509	G	A	SNP	STAG2	NM_001042749.1	human	genbank	54_36p	+1	validated	splice_site	c.1416+1	e13+1	1.000	-	-	-	no_errors	33	0	0.00	34	16	30.77	1	0	0.00
ELF4	0	genome.wustl.edu	36	X	129032705	129032705	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2871-03A-01W-0732-08	TCGA-AB-2871-11A-01W-0732-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	3e8efa46-6045-4be1-b41b-e7b98f165d24	6c7c2063-37fc-45fc-8401-6169345b8c05	X	129032705	129032705	C	T	SNP	ELF4	NM_001421.1	human	genbank	54_36p	-1	validated	missense	c.800	p.R267Q	1.000	HMMPfam_Ets,HMMSmart_ETS,PatternScan_ETS_DOMAIN_2,superfamily_SSF46785	HMMPfam_Ets,HMMSmart_ETS,PatternScan_ETS_DOMAIN_1,PatternScan_ETS_DOMAIN_2,superfamily_SSF46785	-	no_errors	43	0	0.00	113	62	35.23	28	93	76.86
THRAP3	0	genome.wustl.edu	36	1	36539747	36539747	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AB-2871-03A-01W-0732-08	TCGA-AB-2871-11A-01W-0732-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	3e8efa46-6045-4be1-b41b-e7b98f165d24	6c7c2063-37fc-45fc-8401-6169345b8c05	1	36539747	36539747	C	T	SNP	THRAP3	NM_005119.3	human	genbank	54_36p	+1	validated	nonsense	c.2509	p.R837*	0.969	NULL	NULL	-	no_errors	135	0	0.00	128	26	16.46	35	3	7.89
NEB	0	genome.wustl.edu	36	2	152127439	152127439	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2871-03A-01W-0732-08	TCGA-AB-2871-11A-01W-0732-08	G	G	G	T	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	3e8efa46-6045-4be1-b41b-e7b98f165d24	6c7c2063-37fc-45fc-8401-6169345b8c05	2	152127439	152127439	G	T	SNP	NEB	NM_004543.3	human	genbank	54_36p	-1	reviewed	missense	c.13720	p.Q4574K	1.000	HMMSmart_SM00227	HMMPfam_Nebulin,HMMSmart_SM00227,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain	-	no_errors	129	0	0.00	208	73	25.52	NA	NA	NA
RAP1GDS1	0	genome.wustl.edu	36	4	99483396	99483396	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2871-03A-01W-0732-08	TCGA-AB-2871-11A-01W-0732-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	3e8efa46-6045-4be1-b41b-e7b98f165d24	6c7c2063-37fc-45fc-8401-6169345b8c05	4	99483396	99483396	G	A	SNP	RAP1GDS1	NM_001100426.1	human	genbank	54_36p	+1	validated	missense	c.199	p.A67T	1.000	superfamily_ARM repeat	HMMPfam_Arm,HMMSmart_SM00185,superfamily_ARM repeat	-	no_errors	83	0	0.00	134	35	20.59	33	19	36.54
PCDHB12	0	genome.wustl.edu	36	5	140569962	140569962	+	Silent	SNP	C	C	T			TCGA-AB-2871-03A-01W-0732-08	TCGA-AB-2871-11A-01W-0732-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	3e8efa46-6045-4be1-b41b-e7b98f165d24	6c7c2063-37fc-45fc-8401-6169345b8c05	5	140569962	140569962	C	T	SNP	PCDHB12	NM_018932.3	human	genbank	54_36p	+1	reviewed	silent	c.1299	p.T433	0.000	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin	HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin	-	no_errors	30	0	0.00	60	18	22.50	NA	NA	NA
COL12A1	0	genome.wustl.edu	36	6	75917709	75917709	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2871-03A-01W-0732-08	TCGA-AB-2871-11A-01W-0732-08	C	C	C	A	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	3e8efa46-6045-4be1-b41b-e7b98f165d24	6c7c2063-37fc-45fc-8401-6169345b8c05	6	75917709	75917709	C	A	SNP	COL12A1	NM_004370.5	human	genbank	54_36p	-1	reviewed	missense	c.4015	p.D1339Y	1.000	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like	HMMPfam_VWA,HMMSmart_SM00327,HMMSmart_SM00210,HMMPfam_fn3,HMMSmart_SM00060,HMMPfam_Collagen,superfamily_Fibronectin type III,superfamily_Concanavalin A-like lectins/glucanases,superfamily_vWA-like	-	no_errors	129	1	0.77	109	23	17.29	NA	NA	NA
TMEM55A	0	genome.wustl.edu	36	8	92077155	92077155	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2871-03A-01W-0732-08	TCGA-AB-2871-11A-01W-0732-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	3e8efa46-6045-4be1-b41b-e7b98f165d24	6c7c2063-37fc-45fc-8401-6169345b8c05	8	92077155	92077155	C	T	SNP	TMEM55A	NM_018710.2	human	genbank	54_36p	-1	validated	missense	c.700	p.G234R	1.000	HMMPfam_Tmemb_55A	HMMPfam_Tmemb_55A	-	no_errors	49	1	2.00	134	37	21.64	4	7	63.64
PTPN11	0	genome.wustl.edu	36	12	111411292	111411292	+	Missense_Mutation	SNP	A	A	T	rs121918470		TCGA-AB-2871-03A-01W-0732-08	TCGA-AB-2871-11A-01W-0732-08	A	A	A	T	A	A	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	3e8efa46-6045-4be1-b41b-e7b98f165d24	6c7c2063-37fc-45fc-8401-6169345b8c05	12	111411292	111411292	A	T	SNP	PTPN11	NM_002834.3	human	genbank	54_36p	+1	reviewed	missense	c.1529	p.Q510L	1.000	HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II	HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMPfam_SH2,HMMSmart_SM00252,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II,superfamily_SH2 domain	-	no_errors	116	0	0.00	335	112	24.78	35	15	30.00
ATG14	0	genome.wustl.edu	36	14	54922339	54922339	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2871-03A-01W-0732-08	TCGA-AB-2871-11A-01W-0732-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	3e8efa46-6045-4be1-b41b-e7b98f165d24	6c7c2063-37fc-45fc-8401-6169345b8c05	14	54922339	54922339	G	A	SNP	KIAA0831	NM_014924.3	human	genbank	54_36p	-1	predicted	missense	c.638	p.T213M	0.819	HMMPfam_DUF2355	HMMPfam_DUF2355	-	no_errors	117	0	0.00	199	58	22.39	15	15	50.00
HEATR4	0	genome.wustl.edu	36	14	73059207	73059207	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2871-03A-01W-0732-08	TCGA-AB-2871-11A-01W-0732-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	3e8efa46-6045-4be1-b41b-e7b98f165d24	6c7c2063-37fc-45fc-8401-6169345b8c05	14	73059207	73059207	C	T	SNP	HEATR4	NM_203309.1	human	genbank	54_36p	-1	provisional	missense	c.262	p.A88T	0.001	NULL	HMMPfam_HEAT,superfamily_ARM-type_fold	-	no_errors	135	0	0.00	239	61	20.20	2	1	33.33
VPS13C	0	genome.wustl.edu	36	15	59969852	59969852	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2871-03A-01W-0732-08	TCGA-AB-2871-11A-01W-0732-08	T	T	T	C	T	T	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	3e8efa46-6045-4be1-b41b-e7b98f165d24	6c7c2063-37fc-45fc-8401-6169345b8c05	15	59969852	59969852	T	C	SNP	VPS13C	NM_020821.1	human	genbank	54_36p	-1	validated	missense	c.9145	p.I3049V	1.000	NULL	HMMPfam_DUF1162	-	no_errors	114	0	0.00	121	36	22.78	58	21	26.58
LRFN3	0	genome.wustl.edu	36	19	41127523	41127523	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2871-03A-01W-0732-08	TCGA-AB-2871-11A-01W-0732-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	3e8efa46-6045-4be1-b41b-e7b98f165d24	6c7c2063-37fc-45fc-8401-6169345b8c05	19	41127523	41127523	C	T	SNP	LRFN3	NM_024509.1	human	genbank	54_36p	+1	provisional	missense	c.1649	p.S550L	0.979	NULL	HMMSmart_LRRNT,HMMSmart_LRRCT,HMMPfam_LRR_1,HMMSmart_LRR_TYP,HMMSmart_IGc2,HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like,HMMPfam_I-set,superfamily_SSF48726,superfamily_SSF52058	-	no_errors	27	0	0.00	72	15	17.24	5	0	0.00
KCNJ6	0	genome.wustl.edu	36	21	38008662	38008662	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2871-03A-01W-0732-08	TCGA-AB-2871-11A-01W-0732-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	3e8efa46-6045-4be1-b41b-e7b98f165d24	6c7c2063-37fc-45fc-8401-6169345b8c05	21	38008662	38008662	C	T	SNP	KCNJ6	NM_002240.2	human	genbank	54_36p	-1	reviewed	missense	c.668	p.R223Q	1.000	HMMPfam_IRK,superfamily_Ig_E-set	HMMPfam_IRK,superfamily_Ig_E-set,superfamily_SSF81324	-	no_errors	42	0	0.00	72	27	27.00	NA	NA	NA
NPM1	0	genome.wustl.edu	36	5	170770148	170770149	+	Frame_Shift_Ins	INS	-	-	TCTG			TCGA-AB-2871-03A-01W-0732-08	TCGA-AB-2871-11A-01W-0732-08	-	-	-	TCTG	-	-	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	3e8efa46-6045-4be1-b41b-e7b98f165d24	6c7c2063-37fc-45fc-8401-6169345b8c05	5	170770148	170770149	-	TCTG	INS	NPM1	NM_002520.1	human	genbank	54_36p	+1	validated	frame_shift_ins	c.859_860	p.W288fs	1.000:1.000	NULL	HMMPfam_Nucleoplasmin,superfamily_Nucleoplasmin-like core domain	-	no_errors	NA	NA	NA	NA	NA	NA	NA	NA	NA
FLT3	0	genome.wustl.edu	36	13	27506262	27506263	+	In_Frame_Ins	INS	-	-	TCATATTCTCTGAAATCAACGTAGAAGTACTCATTATCTGAGGAGCCGGTCACCTGTACCATC			TCGA-AB-2871-03A-01W-0732-08	TCGA-AB-2871-11A-01W-0732-08	-	-	-	TCATATTCTCTGAAATCAACGTAGAAGTACTCATTATCTGAGGAGCCGGTCACCTGTACCATC	-	-	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	3e8efa46-6045-4be1-b41b-e7b98f165d24	6c7c2063-37fc-45fc-8401-6169345b8c05	13	27506262	27506263	-	TCATATTCTCTGAAATCAACGTAGAAGTACTCATTATCTGAGGAGCCGGTCACCTGTACCATC	INS	FLT3	NM_004119.2	human	genbank	54_36p	-1	reviewed	in_frame_ins	c.1794_1793	p.599in_frame_insMVQVTGSSDNEYFYVDFREYE	0.789:0.821	superfamily_Kinase_like	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_RECEPTOR_TYR_KIN_III,PatternScan_PROTEIN_KINASE_TYR,superfamily_Kinase_like,HMMPfam_ig,PatternScan_PROTEIN_KINASE_ATP,superfamily_SSF48726	-	no_errors	NA	NA	NA	NA	NA	NA	NA	NA	NA