Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	NormalRefReads_WU	NormalVarReads_WU	NormalVAF_WU	TumorRefReads_WU	TumorVarReads_WU	TumorVAF_WU	RNARefReads_WU	RNAVarReads_WU	RNAVAF_WU
ENSG00000211459	0	genome.wustl.edu	36	MT	1149	1149	+	RNA	SNP	G	G	A			TCGA-AB-2845-03D-01W-0755-09	TCGA-AB-2845-11D-01W-0755-09	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	98d27719-6f38-433a-ba0a-a14cb32958d8	542cdd70-b2e9-4232-889c-318a2c5cf5b7	MT	1149	1149	G	A	SNP	ENSG00000211459	ENST00000389680	human	ensembl	54_36p	+1	novel	rna	NULL	NULL	NULL	-	-	-	no_errors	1394	73	4.97	103	135	56.49	NA	NA	NA
EPHA2	0	genome.wustl.edu	36	1	16347846	16347846	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2845-03D-01W-0755-09	TCGA-AB-2845-11D-01W-0755-09	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	98d27719-6f38-433a-ba0a-a14cb32958d8	542cdd70-b2e9-4232-889c-318a2c5cf5b7	1	16347846	16347846	G	A	SNP	EPHA2	NM_004431.2	human	genbank	54_36p	-1	reviewed	missense	c.437	p.A146V	1.000	HMMPfam_Ephrin_lbd,HMMSmart_EPH_lbd,superfamily_Gal_bind_like	HMMPfam_Ephrin_lbd,HMMSmart_EPH_lbd,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_RECEPTOR_TYR_KIN_V_1,PatternScan_RECEPTOR_TYR_KIN_V_2,HMMPfam_SAM_1,HMMSmart_SAM,HMMPfam_fn3,HMMSmart_FN3,PatternScan_PROTEIN_KINASE_TYR,superfamily_FN_III-like,superfamily_Gal_bind_like,superfamily_Grow_fac_recept,superfamily_SAM_homology,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP	-	no_errors	128	6	4.48	21	22	51.16	8	9	52.94
CAPRIN2	0	genome.wustl.edu	36	12	30797894	30797894	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AB-2845-03D-01W-0755-09	TCGA-AB-2845-11D-01W-0755-09	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	98d27719-6f38-433a-ba0a-a14cb32958d8	542cdd70-b2e9-4232-889c-318a2c5cf5b7	12	30797894	30797894	C	T	SNP	CAPRIN2	NM_001002259.1	human	genbank	54_36p	-1	validated	nonsense	c.71	p.W24*	0.015	NULL	HMMPfam_C1q,HMMSmart_SM00110,superfamily_TNF-like	-	no_errors	138	3	2.11	35	32	47.76	8	6	42.86
CEBPA	0	genome.wustl.edu	36	19	38485031	38485031	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2845-03D-01W-0755-09	TCGA-AB-2845-11D-01W-0755-09	C	C	C	G	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	98d27719-6f38-433a-ba0a-a14cb32958d8	542cdd70-b2e9-4232-889c-318a2c5cf5b7	19	38485031	38485031	C	G	SNP	CEBPA	NM_004364.3	human	genbank	54_36p	-1	reviewed	missense	c.130	p.A44P	0.957	NULL	HMMSmart_BRLZ,PatternScan_BZIP_BASIC,HMMPfam_bZIP_2	-	no_errors	0	0	0.00	0	0	0.00	116	90	43.48
TET2	0	genome.wustl.edu	36	4	106400342	106400342	+	Frame_Shift_Del	DEL	G	G	-			TCGA-AB-2845-03D-01W-0755-09	TCGA-AB-2845-11D-01W-0755-09	G	G	G	-	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	98d27719-6f38-433a-ba0a-a14cb32958d8	542cdd70-b2e9-4232-889c-318a2c5cf5b7	4	106400342	106400342	G	-	DEL	TET2	ENST00000265149	human	ensembl	54_36p	+1	known	frame_shift_del	c.327	p.K110fs	0.996	NULL	NULL	-	no_start_codon	72	0	0.00	63	0	0.00	26	0	0.00
CEBPA	0	genome.wustl.edu	36	19	38484230	38484231	+	In_Frame_Ins	INS	-	-	CGGGTTCTGCTT			TCGA-AB-2845-03D-01W-0755-09	TCGA-AB-2845-11D-01W-0755-09	-	-	-	CGGGTTCTGCTT	-	-	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	98d27719-6f38-433a-ba0a-a14cb32958d8	542cdd70-b2e9-4232-889c-318a2c5cf5b7	19	38484230	38484231	-	CGGGTTCTGCTT	INS	CEBPA	NM_004364.3	human	genbank	54_36p	-1	reviewed	in_frame_ins	c.931_930	p.310in_frame_insKQNP	1.000:1.000	HMMSmart_BRLZ,HMMPfam_bZIP_2	HMMSmart_BRLZ,PatternScan_BZIP_BASIC,HMMPfam_bZIP_2	-	no_errors	NA	NA	NA	NA	NA	NA	NA	NA	NA
CEBPA	0	genome.wustl.edu	36	19	38485030	38485031	+	Frame_Shift_Del	DEL	GC	GC	-			TCGA-AB-2845-03D-01W-0755-09	TCGA-AB-2845-11D-01W-0755-09	GC	GC	GC	-	GC	GC	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	98d27719-6f38-433a-ba0a-a14cb32958d8	542cdd70-b2e9-4232-889c-318a2c5cf5b7	19	38485030	38485031	GC	-	DEL	CEBPA	NM_004364.3	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.131_130	p.A44fs	0.988:0.957	NULL	HMMSmart_BRLZ,PatternScan_BZIP_BASIC,HMMPfam_bZIP_2	-	no_errors	0	0	0.00	0	0	0.00	0	84	34.15