Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq TVarRat NVarRat dbSNP_Strength dbSNP_AF dbSNP_PopFreq Confidence Algorithm TAS1R3 83756 hgsc.bcm.edu hg19 1 1267161 1267161 + Missense_Mutation SNP C C G novel TCGA-Y8-A8S1-01A-11D-A36X-10 TCGA-Y8-A8S1-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5c980b27-02f4-4e7d-bc5f-59809f2cbfd0 99aa2435-d52d-45ef-a896-64a90cac0ad3 . TAS1R3 NM_152228 exon2 c.C335G p.P112R TGAAGCCCAGCCT . 65.0 9.0 82.0 0.0 . 39 . . . none . . PASS Atlas-SNP KAZN 23254 hgsc.bcm.edu hg19 1 15382699 15382699 + Missense_Mutation SNP T T C novel TCGA-Y8-A8S1-01A-11D-A36X-10 TCGA-Y8-A8S1-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5c980b27-02f4-4e7d-bc5f-59809f2cbfd0 99aa2435-d52d-45ef-a896-64a90cac0ad3 . KAZN NM_015209 exon5 c.T839C p.L280P CGGACCTCCCGCT . 170.0 24.0 157.0 0.0 . 57 . . . none . . PASS Atlas-SNP TMEM51 55092 hgsc.bcm.edu hg19 1 15545932 15545932 + Missense_Mutation SNP C C G novel TCGA-Y8-A8S1-01A-11D-A36X-10 TCGA-Y8-A8S1-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5c980b27-02f4-4e7d-bc5f-59809f2cbfd0 99aa2435-d52d-45ef-a896-64a90cac0ad3 . TMEM51 NM_018022 exon3 c.C455G p.P152R AGAACCCGAGGTT . 324.0 39.0 286.0 0.0 . 28 . . . none . . PASS Atlas-SNP PADI4 23569 hgsc.bcm.edu hg19 1 17666248 17666248 + Missense_Mutation SNP A A G novel TCGA-Y8-A8S1-01A-11D-A36X-10 TCGA-Y8-A8S1-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5c980b27-02f4-4e7d-bc5f-59809f2cbfd0 99aa2435-d52d-45ef-a896-64a90cac0ad3 . PADI4 NM_012387 exon6 c.A592G p.T198A AACCATACACTGG . 89.0 4.0 94.0 0.0 . 70 . . . none . . PASS Atlas-SNP C1orf172 126695 hgsc.bcm.edu hg19 1 27278714 27278714 + Missense_Mutation SNP T T C novel TCGA-Y8-A8S1-01A-11D-A36X-10 TCGA-Y8-A8S1-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5c980b27-02f4-4e7d-bc5f-59809f2cbfd0 99aa2435-d52d-45ef-a896-64a90cac0ad3 . C1orf172 NM_152365 exon2 c.A158G p.H53R GGCCCATGGTGGC . 120.0 15.0 87.0 0.0 . 38 . . . none . . PASS Atlas-SNP NCDN 23154 hgsc.bcm.edu hg19 1 36026513 36026513 + Missense_Mutation SNP C C G novel TCGA-Y8-A8S1-01A-11D-A36X-10 TCGA-Y8-A8S1-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5c980b27-02f4-4e7d-bc5f-59809f2cbfd0 99aa2435-d52d-45ef-a896-64a90cac0ad3 . NCDN NM_014284 exon3 c.C761G p.P254R CCGTGCCCCCTGA . 71.0 13.0 75.0 0.0 . 79 . . . none . . PASS Atlas-SNP KDM4A 9682 hgsc.bcm.edu hg19 1 44128602 44128602 + Missense_Mutation SNP T T A novel TCGA-Y8-A8S1-01A-11D-A36X-10 TCGA-Y8-A8S1-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5c980b27-02f4-4e7d-bc5f-59809f2cbfd0 99aa2435-d52d-45ef-a896-64a90cac0ad3 . KDM4A NM_014663 exon5 c.T467A p.I156N GAACAATCCTGGA . 198.0 21.0 212.0 0.0 . 74 . . . none . . PASS Atlas-SNP LCE4A 199834 hgsc.bcm.edu hg19 1 152681679 152681679 + Missense_Mutation SNP C C G novel TCGA-Y8-A8S1-01A-11D-A36X-10 TCGA-Y8-A8S1-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5c980b27-02f4-4e7d-bc5f-59809f2cbfd0 99aa2435-d52d-45ef-a896-64a90cac0ad3 LCE4A,rectum,carcinoma,0,1 LCE4A NM_178356 exon1 c.C128G p.S43C GTGGCTCCAGCTC . 195.0 13.0 219.0 0.0 . 37 . . . none . . PASS Atlas-SNP LCE4A 199834 hgsc.bcm.edu hg19 1 152681680 152681680 + Silent SNP C C T rs200890315 bycluster TCGA-Y8-A8S1-01A-11D-A36X-10 TCGA-Y8-A8S1-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5c980b27-02f4-4e7d-bc5f-59809f2cbfd0 99aa2435-d52d-45ef-a896-64a90cac0ad3 LCE4A,rectum,carcinoma,+1,15 LCE4A NM_178356 exon1 c.C129T p.S43S TGGCTCCAGCTCT . 192.0 9.0 215.0 1.0 . 37 . . . weak . . PASS Atlas-SNP KIAA0040 9674 hgsc.bcm.edu hg19 1 175129922 175129922 + Missense_Mutation SNP A A C novel TCGA-Y8-A8S1-01A-11D-A36X-10 TCGA-Y8-A8S1-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5c980b27-02f4-4e7d-bc5f-59809f2cbfd0 99aa2435-d52d-45ef-a896-64a90cac0ad3 . KIAA0040 NM_001162895 exon3 c.T228G p.D76E TTCTTCATCCTTC . 62.0 4.0 75.0 0.0 . 2 . . . none . . PASS Atlas-SNP KLF11 8462 hgsc.bcm.edu hg19 2 10192452 10192452 + Nonsense_Mutation SNP A A T novel TCGA-Y8-A8S1-01A-11D-A36X-10 TCGA-Y8-A8S1-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5c980b27-02f4-4e7d-bc5f-59809f2cbfd0 99aa2435-d52d-45ef-a896-64a90cac0ad3 . KLF11 NM_003597 exon4 c.A1357T p.K453X GAGAAGAAGTTTG . 141.0 22.0 157.0 0.0 . 45 . . . none . . PASS Atlas-SNP KLF11 8462 hgsc.bcm.edu hg19 2 10192453 10192453 + Missense_Mutation SNP A A T novel TCGA-Y8-A8S1-01A-11D-A36X-10 TCGA-Y8-A8S1-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5c980b27-02f4-4e7d-bc5f-59809f2cbfd0 99aa2435-d52d-45ef-a896-64a90cac0ad3 . KLF11 NM_003597 exon4 c.A1358T p.K453M AGAAGAAGTTTGT . 137.0 22.0 157.0 0.0 . 45 . . . none . . PASS Atlas-SNP SMC6 79677 hgsc.bcm.edu hg19 2 17888505 17888505 + Missense_Mutation SNP C C G novel TCGA-Y8-A8S1-01A-11D-A36X-10 TCGA-Y8-A8S1-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5c980b27-02f4-4e7d-bc5f-59809f2cbfd0 99aa2435-d52d-45ef-a896-64a90cac0ad3 . SMC6 NM_001142286 exon18 c.G1987C p.D663H CCACATCTCTGCT . 117.0 19.0 158.0 0.0 . 102 . . . none . . PASS Atlas-SNP NCL 4691 hgsc.bcm.edu hg19 2 232325414 232325414 + Missense_Mutation SNP T T A rs199689485 bycluster TCGA-Y8-A8S1-01A-11D-A36X-10 TCGA-Y8-A8S1-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5c980b27-02f4-4e7d-bc5f-59809f2cbfd0 99aa2435-d52d-45ef-a896-64a90cac0ad3 . NCL NM_005381 exon4 c.A777T p.E259D ATCATCTTCATCA . 69.0 10.0 65.0 0.0 . 80 . . . weak . . PASS Atlas-SNP KIF1A 547 hgsc.bcm.edu hg19 2 241696843 241696843 + Missense_Mutation SNP C C A novel TCGA-Y8-A8S1-01A-11D-A36X-10 TCGA-Y8-A8S1-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5c980b27-02f4-4e7d-bc5f-59809f2cbfd0 99aa2435-d52d-45ef-a896-64a90cac0ad3 . KIF1A NM_001244008 exon27 c.G2751T p.E917D CTCATCCTCCTCC . 167.0 8.0 151.0 0.0 . 152 . . . none . . PASS Atlas-SNP ZNF619 285267 hgsc.bcm.edu hg19 3 40528724 40528724 + Silent SNP C C T novel TCGA-Y8-A8S1-01A-11D-A36X-10 TCGA-Y8-A8S1-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5c980b27-02f4-4e7d-bc5f-59809f2cbfd0 99aa2435-d52d-45ef-a896-64a90cac0ad3 . ZNF619 NM_001145082 exon6 c.C843T p.F281F AACCTTCAGATAT . 128.0 19.0 129.0 0.0 . 57 . . . none . . PASS Atlas-SNP TMIE 259236 hgsc.bcm.edu hg19 3 46751076 46751076 + Missense_Mutation SNP G G T rs75020261 bycluster TCGA-Y8-A8S1-01A-11D-A36X-10 TCGA-Y8-A8S1-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5c980b27-02f4-4e7d-bc5f-59809f2cbfd0 99aa2435-d52d-45ef-a896-64a90cac0ad3 . TMIE NM_147196 exon4 c.G369T p.K123N GGATAAGAAGAAG . 217.0 17.0 199.0 0.0 . 16 . . . weak . . PASS Atlas-SNP CELSR3 1951 hgsc.bcm.edu hg19 3 48690465 48690465 + Silent SNP A A T novel TCGA-Y8-A8S1-01A-11D-A36X-10 TCGA-Y8-A8S1-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5c980b27-02f4-4e7d-bc5f-59809f2cbfd0 99aa2435-d52d-45ef-a896-64a90cac0ad3 . CELSR3 NM_001407 exon10 c.T5604A p.L1868L GACCATAAGGACA . 141.0 19.0 109.0 0.0 . 237 . . . none . . PASS Atlas-SNP EPHA3 2042 hgsc.bcm.edu hg19 3 89498468 89498468 + Missense_Mutation SNP C C T novel TCGA-Y8-A8S1-01A-11D-A36X-10 TCGA-Y8-A8S1-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5c980b27-02f4-4e7d-bc5f-59809f2cbfd0 99aa2435-d52d-45ef-a896-64a90cac0ad3 . EPHA3 NM_005233 exon14 c.C2440T p.L814F ATTGTTCTCTGGG . 170.0 26.0 166.0 0.0 . 501 . . . none . . PASS Atlas-SNP OR5H14 403273 hgsc.bcm.edu hg19 3 97868711 97868711 + Missense_Mutation SNP G G A novel TCGA-Y8-A8S1-01A-11D-A36X-10 TCGA-Y8-A8S1-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5c980b27-02f4-4e7d-bc5f-59809f2cbfd0 99aa2435-d52d-45ef-a896-64a90cac0ad3 OR5H14,NS,carcinoma,0,1 OR5H14 NM_001005514 exon1 c.G482A p.G161E ATGAAGGATTTTT . 248.0 31.0 216.0 0.0 . 56 . . . none . . PASS Atlas-SNP PDS5A 23244 hgsc.bcm.edu hg19 4 39910143 39910143 + Missense_Mutation SNP A A G novel TCGA-Y8-A8S1-01A-11D-A36X-10 TCGA-Y8-A8S1-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5c980b27-02f4-4e7d-bc5f-59809f2cbfd0 99aa2435-d52d-45ef-a896-64a90cac0ad3 . PDS5A NM_001100399 exon11 c.T1105C p.S369P CATGTGATCTAAC . 92.0 15.0 83.0 0.0 . 114 . . . none . . PASS Atlas-SNP HNRPDL 9987 hgsc.bcm.edu hg19 4 83350434 83350434 + Missense_Mutation SNP T T C novel TCGA-Y8-A8S1-01A-11D-A36X-10 TCGA-Y8-A8S1-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5c980b27-02f4-4e7d-bc5f-59809f2cbfd0 99aa2435-d52d-45ef-a896-64a90cac0ad3 . HNRPDL NM_031372 exon1 c.A410G p.K137R TTGATCTTGGATC . 84.0 9.0 100.0 0.0 . 35 . . . none . . PASS Atlas-SNP SV2C 22987 hgsc.bcm.edu hg19 5 75596667 75596667 + Missense_Mutation SNP T T G novel TCGA-Y8-A8S1-01A-11D-A36X-10 TCGA-Y8-A8S1-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5c980b27-02f4-4e7d-bc5f-59809f2cbfd0 99aa2435-d52d-45ef-a896-64a90cac0ad3 . SV2C NM_014979 exon11 c.T1750G p.F584V ATTTATTTTGTCA . 125.0 18.0 131.0 0.0 . 97 . . . none . . PASS Atlas-SNP AFAP1L1 134265 hgsc.bcm.edu hg19 5 148679111 148679111 + Missense_Mutation SNP G G T novel TCGA-Y8-A8S1-01A-11D-A36X-10 TCGA-Y8-A8S1-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5c980b27-02f4-4e7d-bc5f-59809f2cbfd0 99aa2435-d52d-45ef-a896-64a90cac0ad3 . AFAP1L1 NM_001146337 exon2 c.G56T p.S19I TGCTCAGCCTCCT . 88.0 5.0 73.0 0.0 . 86 . . . none . . PASS Atlas-SNP HIST1H1B 3009 hgsc.bcm.edu hg19 6 27834701 27834701 + Missense_Mutation SNP G G C novel TCGA-Y8-A8S1-01A-11D-A36X-10 TCGA-Y8-A8S1-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5c980b27-02f4-4e7d-bc5f-59809f2cbfd0 99aa2435-d52d-45ef-a896-64a90cac0ad3 . HIST1H1B NM_005322 exon1 c.C607G p.P203A CTTTGGGCTTTGC . 138.0 8.0 139.0 0.0 . 54 . . . none . . PASS Atlas-SNP GABBR1 2550 hgsc.bcm.edu hg19 6 29581105 29581105 + Missense_Mutation SNP C C T novel TCGA-Y8-A8S1-01A-11D-A36X-10 TCGA-Y8-A8S1-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5c980b27-02f4-4e7d-bc5f-59809f2cbfd0 99aa2435-d52d-45ef-a896-64a90cac0ad3 . GABBR1 NM_001470 exon12 c.G1481A p.R494H TCCAGGCGCACAC . 160.0 22.0 200.0 0.0 . 95 . . . none . . PASS Atlas-SNP B3GALT4 8705 hgsc.bcm.edu hg19 6 33246172 33246172 + Missense_Mutation SNP A A C novel TCGA-Y8-A8S1-01A-11D-A36X-10 TCGA-Y8-A8S1-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5c980b27-02f4-4e7d-bc5f-59809f2cbfd0 99aa2435-d52d-45ef-a896-64a90cac0ad3 . B3GALT4 NM_003782 exon1 c.A976C p.K326Q TATGGGAAATTCC . 62.0 7.0 79.0 0.0 . 30 . . . none . . PASS Atlas-SNP DNAH8 1769 hgsc.bcm.edu hg19 6 38843576 38843576 + Silent SNP C C A novel TCGA-Y8-A8S1-01A-11D-A36X-10 TCGA-Y8-A8S1-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5c980b27-02f4-4e7d-bc5f-59809f2cbfd0 99aa2435-d52d-45ef-a896-64a90cac0ad3 . DNAH8 NM_001206927 exon53 c.C7830A p.T2610T TCAAACCATGTAT . 111.0 13.0 150.0 0.0 . 1239 . . . none . . PASS Atlas-SNP PKHD1 5314 hgsc.bcm.edu hg19 6 51924822 51924822 + Silent SNP G G A novel TCGA-Y8-A8S1-01A-11D-A36X-10 TCGA-Y8-A8S1-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5c980b27-02f4-4e7d-bc5f-59809f2cbfd0 99aa2435-d52d-45ef-a896-64a90cac0ad3 . PKHD1 NM_170724 exon15 c.C1137T p.F379F CACAAAGAACCCA . 75.0 12.0 88.0 0.0 . 927 . . . none . . PASS Atlas-SNP UTRN 7402 hgsc.bcm.edu hg19 6 144724303 144724303 + Missense_Mutation SNP A A T novel TCGA-Y8-A8S1-01A-11D-A36X-10 TCGA-Y8-A8S1-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5c980b27-02f4-4e7d-bc5f-59809f2cbfd0 99aa2435-d52d-45ef-a896-64a90cac0ad3 . UTRN NM_007124 exon2 c.A124T p.N42Y TGGATAAATGCTC . 116.0 19.0 102.0 0.0 . 327 . . . none . . PASS Atlas-SNP GRM1 2911 hgsc.bcm.edu hg19 6 146678763 146678763 + Missense_Mutation SNP T T C novel TCGA-Y8-A8S1-01A-11D-A36X-10 TCGA-Y8-A8S1-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5c980b27-02f4-4e7d-bc5f-59809f2cbfd0 99aa2435-d52d-45ef-a896-64a90cac0ad3 . GRM1 NM_000838 exon6 c.T1535C p.I512T ACAAAATCCAGAT . 120.0 18.0 132.0 0.0 . 419 . . . none . . PASS Atlas-SNP ZKSCAN1 7586 hgsc.bcm.edu hg19 7 99631136 99631136 + Missense_Mutation SNP G G T novel TCGA-Y8-A8S1-01A-11D-A36X-10 TCGA-Y8-A8S1-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5c980b27-02f4-4e7d-bc5f-59809f2cbfd0 99aa2435-d52d-45ef-a896-64a90cac0ad3 . ZKSCAN1 NM_003439 exon6 c.G1008T p.K336N AGGAAAGGACAAA . 172.0 37.0 184.0 0.0 . 59 . . . none . . PASS Atlas-SNP ARMC10 83787 hgsc.bcm.edu hg19 7 102738803 102738803 + Nonsense_Mutation SNP C C T novel TCGA-Y8-A8S1-01A-11D-A36X-10 TCGA-Y8-A8S1-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5c980b27-02f4-4e7d-bc5f-59809f2cbfd0 99aa2435-d52d-45ef-a896-64a90cac0ad3 ARMC10,NS,carcinoma,0,2 ARMC10 NM_031905 exon7 c.C835T p.R279X CTTCTTCGAGTAC . 475.0 23.0 521.0 0.0 . 25 . . . none . . PASS Atlas-SNP RBM33 155435 hgsc.bcm.edu hg19 7 155473562 155473562 + Missense_Mutation SNP T T A novel TCGA-Y8-A8S1-01A-11D-A36X-10 TCGA-Y8-A8S1-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5c980b27-02f4-4e7d-bc5f-59809f2cbfd0 99aa2435-d52d-45ef-a896-64a90cac0ad3 . RBM33 NM_053043 exon5 c.T527A p.V176E ATGAAGTGTTAGA . 154.0 17.0 160.0 0.0 . 157 . . . none . . PASS Atlas-SNP TEX15 56154 hgsc.bcm.edu hg19 8 30700777 30700777 + Silent SNP T T C novel TCGA-Y8-A8S1-01A-11D-A36X-10 TCGA-Y8-A8S1-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5c980b27-02f4-4e7d-bc5f-59809f2cbfd0 99aa2435-d52d-45ef-a896-64a90cac0ad3 . TEX15 NM_031271 exon1 c.A5757G p.R1919R ATTCACTCTGAGT . 114.0 11.0 110.0 0.0 . 350 . . . none . . PASS Atlas-SNP STMN2 11075 hgsc.bcm.edu hg19 8 80567258 80567258 + Silent SNP G G A novel TCGA-Y8-A8S1-01A-11D-A36X-10 TCGA-Y8-A8S1-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5c980b27-02f4-4e7d-bc5f-59809f2cbfd0 99aa2435-d52d-45ef-a896-64a90cac0ad3 . STMN2 NM_007029 exon4 c.G441A p.E147E CCGTGAGGCTAAT . 130.0 17.0 131.0 0.0 . 23 . . . none . . PASS Atlas-SNP DOCK8 81704 hgsc.bcm.edu hg19 9 441400 441400 + Missense_Mutation SNP G G T novel TCGA-Y8-A8S1-01A-11D-A36X-10 TCGA-Y8-A8S1-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5c980b27-02f4-4e7d-bc5f-59809f2cbfd0 99aa2435-d52d-45ef-a896-64a90cac0ad3 . DOCK8 NM_203447 exon41 c.G5338T p.D1780Y GCCTTCGACAGCA . 70.0 6.0 88.0 0.0 . 401 . . . none . . PASS Atlas-SNP TPD52L3 89882 hgsc.bcm.edu hg19 9 6328657 6328657 + Missense_Mutation SNP T T C novel TCGA-Y8-A8S1-01A-11D-A36X-10 TCGA-Y8-A8S1-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5c980b27-02f4-4e7d-bc5f-59809f2cbfd0 99aa2435-d52d-45ef-a896-64a90cac0ad3 . TPD52L3 NM_033516 exon1 c.T62C p.L21P CTGAACTGGAGGA . 115.0 18.0 118.0 0.0 . 40 . . . none . . PASS Atlas-SNP ZNF503 84858 hgsc.bcm.edu hg19 10 77161118 77161118 + Silent SNP G G T novel TCGA-Y8-A8S1-01A-11D-A36X-10 TCGA-Y8-A8S1-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5c980b27-02f4-4e7d-bc5f-59809f2cbfd0 99aa2435-d52d-45ef-a896-64a90cac0ad3 . ZNF503 NM_032772 exon1 c.C60A p.G20G TCCGCCGCCGCCG . 27.0 6.0 36.0 0.0 . 25 . . . none . . PASS Atlas-SNP ZNF503 84858 hgsc.bcm.edu hg19 10 77161124 77161124 + Silent SNP G G T novel TCGA-Y8-A8S1-01A-11D-A36X-10 TCGA-Y8-A8S1-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5c980b27-02f4-4e7d-bc5f-59809f2cbfd0 99aa2435-d52d-45ef-a896-64a90cac0ad3 . ZNF503 NM_032772 exon1 c.C54A p.G18G GCCGCCGCCGCCG . 24.0 6.0 34.0 0.0 . 25 . . . none . . PASS Atlas-SNP MUC5B 727897 hgsc.bcm.edu hg19 11 1248326 1248326 + Missense_Mutation SNP G G C novel TCGA-Y8-A8S1-01A-11D-A36X-10 TCGA-Y8-A8S1-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5c980b27-02f4-4e7d-bc5f-59809f2cbfd0 99aa2435-d52d-45ef-a896-64a90cac0ad3 . MUC5B NM_002458 exon5 c.G527C p.S176T AGGTCAGCATCCG . 125.0 15.0 164.0 0.0 . 473 . . . none . . PASS Atlas-SNP UBQLN3 50613 hgsc.bcm.edu hg19 11 5530266 5530266 + Missense_Mutation SNP G G T novel TCGA-Y8-A8S1-01A-11D-A36X-10 TCGA-Y8-A8S1-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5c980b27-02f4-4e7d-bc5f-59809f2cbfd0 99aa2435-d52d-45ef-a896-64a90cac0ad3 . UBQLN3 NM_017481 exon2 c.C523A p.P175T TGAAGGGGTCATC . 120.0 16.0 120.0 0.0 . 107 . . . none . . PASS Atlas-SNP ATXN2 6311 hgsc.bcm.edu hg19 12 111991980 111991980 + Missense_Mutation SNP A A T novel TCGA-Y8-A8S1-01A-11D-A36X-10 TCGA-Y8-A8S1-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5c980b27-02f4-4e7d-bc5f-59809f2cbfd0 99aa2435-d52d-45ef-a896-64a90cac0ad3 . ATXN2 NM_002973 exon3 c.T810A p.H270Q AAGTATATGAACC . 40.0 7.0 56.0 0.0 . 99 . . . none . . PASS Atlas-SNP SBNO1 55206 hgsc.bcm.edu hg19 12 123829975 123829975 + Missense_Mutation SNP G G A novel TCGA-Y8-A8S1-01A-11D-A36X-10 TCGA-Y8-A8S1-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5c980b27-02f4-4e7d-bc5f-59809f2cbfd0 99aa2435-d52d-45ef-a896-64a90cac0ad3 . SBNO1 NM_001167856 exon3 c.C380T p.T127I CTTGCAGTAGTCT . 236.0 29.0 202.0 0.0 . 138 . . . none . . PASS Atlas-SNP NBEA 26960 hgsc.bcm.edu hg19 13 35738623 35738623 + Missense_Mutation SNP C C A novel TCGA-Y8-A8S1-01A-11D-A36X-10 TCGA-Y8-A8S1-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5c980b27-02f4-4e7d-bc5f-59809f2cbfd0 99aa2435-d52d-45ef-a896-64a90cac0ad3 . NBEA NM_015678 exon24 c.C4210A p.L1404I CCTTTGCTCTCTG . 113.0 10.0 113.0 0.0 . 340 . . . none . . PASS Atlas-SNP MYH6 4624 hgsc.bcm.edu hg19 14 23866283 23866283 + Missense_Mutation SNP A A G novel TCGA-Y8-A8S1-01A-11D-A36X-10 TCGA-Y8-A8S1-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5c980b27-02f4-4e7d-bc5f-59809f2cbfd0 99aa2435-d52d-45ef-a896-64a90cac0ad3 . MYH6 NM_002471 exon18 c.T2057C p.M686T TTGTCCATCACCC . 69.0 9.0 79.0 0.0 . 274 . . . none . . PASS Atlas-SNP ATG2B 55102 hgsc.bcm.edu hg19 14 96788562 96788562 + Missense_Mutation SNP C C G novel TCGA-Y8-A8S1-01A-11D-A36X-10 TCGA-Y8-A8S1-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5c980b27-02f4-4e7d-bc5f-59809f2cbfd0 99aa2435-d52d-45ef-a896-64a90cac0ad3 ATG2B,NS,carcinoma,0,1 ATG2B NM_018036 exon18 c.G2766C p.M922I TTCTGTCATTTCT . 138.0 21.0 117.0 0.0 . 169 . . . none . . PASS Atlas-SNP ZNF469 84627 hgsc.bcm.edu hg19 16 88501405 88501405 + Silent SNP C C T novel TCGA-Y8-A8S1-01A-11D-A36X-10 TCGA-Y8-A8S1-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5c980b27-02f4-4e7d-bc5f-59809f2cbfd0 99aa2435-d52d-45ef-a896-64a90cac0ad3 . ZNF469 NM_001127464 exon2 c.C7443T p.A2481A AGCGGCCTTGCCT . 106.0 13.0 100.0 0.0 . 121 . . . none . . PASS Atlas-SNP ZNF469 84627 hgsc.bcm.edu hg19 16 88501409 88501409 + Missense_Mutation SNP C C A novel TCGA-Y8-A8S1-01A-11D-A36X-10 TCGA-Y8-A8S1-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5c980b27-02f4-4e7d-bc5f-59809f2cbfd0 99aa2435-d52d-45ef-a896-64a90cac0ad3 . ZNF469 NM_001127464 exon2 c.C7447A p.P2483T GCCTTGCCTGCTC . 106.0 13.0 108.0 0.0 . 121 . . . none . . PASS Atlas-SNP MED1 5469 hgsc.bcm.edu hg19 17 37565772 37565772 + Missense_Mutation SNP T T C novel TCGA-Y8-A8S1-01A-11D-A36X-10 TCGA-Y8-A8S1-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5c980b27-02f4-4e7d-bc5f-59809f2cbfd0 99aa2435-d52d-45ef-a896-64a90cac0ad3 . MED1 NM_004774 exon17 c.A2702G p.Q901R AGTGCCTGAGATG . 136.0 14.0 143.0 0.0 . 123 . . . none . . PASS Atlas-SNP KANSL1 284058 hgsc.bcm.edu hg19 17 44248467 44248467 + Missense_Mutation SNP C C A novel TCGA-Y8-A8S1-01A-11D-A36X-10 TCGA-Y8-A8S1-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5c980b27-02f4-4e7d-bc5f-59809f2cbfd0 99aa2435-d52d-45ef-a896-64a90cac0ad3 . . NM_001193466 exon2 c.G1043T p.R348L GCCTTTCGAGTCA . 60.0 9.0 42.0 0.0 . . . . . none . . PASS Atlas-SNP IMPACT 55364 hgsc.bcm.edu hg19 18 22020542 22020542 + Silent SNP G G C novel TCGA-Y8-A8S1-01A-11D-A36X-10 TCGA-Y8-A8S1-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5c980b27-02f4-4e7d-bc5f-59809f2cbfd0 99aa2435-d52d-45ef-a896-64a90cac0ad3 . IMPACT NM_018439 exon6 c.G450C p.S150S AAGTTCGCTTAAA . 130.0 16.0 133.0 0.0 . 37 . . . none . . PASS Atlas-SNP DYM 54808 hgsc.bcm.edu hg19 18 46889546 46889546 + Missense_Mutation SNP G G C novel TCGA-Y8-A8S1-01A-11D-A36X-10 TCGA-Y8-A8S1-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5c980b27-02f4-4e7d-bc5f-59809f2cbfd0 99aa2435-d52d-45ef-a896-64a90cac0ad3 . DYM NM_017653 exon6 c.C479G p.T160S ATATCAGTGATCA . 219.0 37.0 287.0 0.0 . 52 . . . none . . PASS Atlas-SNP STAP2 55620 hgsc.bcm.edu hg19 19 4332020 4332020 + Missense_Mutation SNP T T G rs74464159 bycluster;alternate_allele TCGA-Y8-A8S1-01A-11D-A36X-10 TCGA-Y8-A8S1-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5c980b27-02f4-4e7d-bc5f-59809f2cbfd0 99aa2435-d52d-45ef-a896-64a90cac0ad3 . STAP2 NM_001013841 exon4 c.A353C p.E118A CTTACCTCCACCA . 131.0 12.0 144.0 0.0 . 38 . . . alt . . PASS Atlas-SNP TRIP10 9322 hgsc.bcm.edu hg19 19 6744841 6744841 + Missense_Mutation SNP T T C novel TCGA-Y8-A8S1-01A-11D-A36X-10 TCGA-Y8-A8S1-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5c980b27-02f4-4e7d-bc5f-59809f2cbfd0 99aa2435-d52d-45ef-a896-64a90cac0ad3 . TRIP10 NM_004240 exon9 c.T820C p.S274P CACAAGTCAGGTT . 95.0 13.0 85.0 0.0 . 104 . . . none . . PASS Atlas-SNP PRR12 57479 hgsc.bcm.edu hg19 19 50119450 50119450 + Missense_Mutation SNP C C T novel TCGA-Y8-A8S1-01A-11D-A36X-10 TCGA-Y8-A8S1-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5c980b27-02f4-4e7d-bc5f-59809f2cbfd0 99aa2435-d52d-45ef-a896-64a90cac0ad3 . PRR12 NM_020719 exon9 c.C5471T p.S1824F CGGAGTCCTCCCC . 146.0 10.0 172.0 0.0 . 157 . . . none . . PASS Atlas-SNP NLRP11 204801 hgsc.bcm.edu hg19 19 56297223 56297223 + Missense_Mutation SNP C C T novel TCGA-Y8-A8S1-01A-11D-A36X-10 TCGA-Y8-A8S1-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5c980b27-02f4-4e7d-bc5f-59809f2cbfd0 99aa2435-d52d-45ef-a896-64a90cac0ad3 . NLRP11 NM_145007 exon12 c.G2870A p.G957D TTCAGGCCAGTTA . 126.0 16.0 135.0 0.0 . 139 . . . none . . PASS Atlas-SNP MYBL2 4605 hgsc.bcm.edu hg19 20 42338684 42338684 + Silent SNP C C T novel TCGA-Y8-A8S1-01A-11D-A36X-10 TCGA-Y8-A8S1-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5c980b27-02f4-4e7d-bc5f-59809f2cbfd0 99aa2435-d52d-45ef-a896-64a90cac0ad3 . MYBL2 NM_002466 exon10 c.C1587T p.Y529Y GAAGTACGGACCC . 130.0 6.0 164.0 0.0 . 82 . . . none . . PASS Atlas-SNP PMEPA1 56937 hgsc.bcm.edu hg19 20 56284608 56284608 + Missense_Mutation SNP C C T novel TCGA-Y8-A8S1-01A-11D-A36X-10 TCGA-Y8-A8S1-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5c980b27-02f4-4e7d-bc5f-59809f2cbfd0 99aa2435-d52d-45ef-a896-64a90cac0ad3 . PMEPA1 NM_020182 exon1 c.G31A p.A11T CGGCGGCGGTGCT . 124.0 6.0 140.0 0.0 . 29 . . . none . . PASS Atlas-SNP SHROOM3 57619 hgsc.bcm.edu hg19 4 77661777 77661777 + Frame_Shift_Del DEL T T - novel TCGA-Y8-A8S1-01A-11D-A36X-10 TCGA-Y8-A8S1-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5c980b27-02f4-4e7d-bc5f-59809f2cbfd0 99aa2435-d52d-45ef-a896-64a90cac0ad3 . SHROOM3 NM_020859 exon5 c.2450delC p.T817fs . . 141.0 15.0 130.0 0.0 . 134 . 0.106383 0 none . . PASS Atlas-Indel,Pindel TMF1 7110 hgsc.bcm.edu hg19 3 69097304 69097307 + Frame_Shift_Del DEL TTCT TTCT - novel TCGA-Y8-A8S1-01A-11D-A36X-10 TCGA-Y8-A8S1-10A-01D-A370-10 TTCT TTCT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5c980b27-02f4-4e7d-bc5f-59809f2cbfd0 99aa2435-d52d-45ef-a896-64a90cac0ad3 . TMF1 NM_007114 exon2 c.550_553del p.184_185del . . 165.0 19.0 188.0 0.0 . 77 . 0.115152 0 none . . PASS Atlas-Indel,Pindel HIST1H1B 3009 hgsc.bcm.edu hg19 6 27834657 27834701 + In_Frame_Del DEL CTTTGCAGCTTTAGGTTTTGCTGCTTTGGGCTTAGCGGCTTTGGG CTTTGCAGCTTTAGGTTTTGCTGCTTTGGGCTTAGCGGCTTTGGG - novel TCGA-Y8-A8S1-01A-11D-A36X-10 TCGA-Y8-A8S1-10A-01D-A370-10 CTTTGCAGCTTTAGGTTTTGCTGCTTTGGGCTTAGCGGCTTTGGG CTTTGCAGCTTTAGGTTTTGCTGCTTTGGGCTTAGCGGCTTTGGG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5c980b27-02f4-4e7d-bc5f-59809f2cbfd0 99aa2435-d52d-45ef-a896-64a90cac0ad3 . HIST1H1B NM_005322 exon1 c.608_652del p.203_218del . . 130.0 11.0 128.0 0.0 . 54 . 0.085 . none . . PASS Pindel