Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq TVarRat NVarRat dbSNP_Strength dbSNP_AF dbSNP_PopFreq Confidence Algorithm SPEN 23013 hgsc.bcm.edu hg19 1 16265370 16265370 + Missense_Mutation SNP A A G novel TCGA-Y8-A8RZ-01A-11D-A36X-10 TCGA-Y8-A8RZ-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 63f0d3c3-071e-44c7-863d-72f0242c5b93 2a0d89df-334c-4d21-ad1d-0040556032a0 . SPEN NM_015001 exon14 c.A10862G p.Q3621R CCAATCAGGTCGG . 13.0 10.0 34.0 0.0 . 374 . . . none . . PASS Atlas-SNP CDCA8 55143 hgsc.bcm.edu hg19 1 38158699 38158699 + Missense_Mutation SNP T T C novel TCGA-Y8-A8RZ-01A-11D-A36X-10 TCGA-Y8-A8RZ-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 63f0d3c3-071e-44c7-863d-72f0242c5b93 2a0d89df-334c-4d21-ad1d-0040556032a0 . CDCA8 NM_001256875 exon2 c.T217C p.Y73H CTTGACTACTTCG . 129.0 56.0 144.0 0.0 . 25 . . . none . . PASS Atlas-SNP ARHGAP29 9411 hgsc.bcm.edu hg19 1 94639617 94639617 + Silent SNP G G T novel TCGA-Y8-A8RZ-01A-11D-A36X-10 TCGA-Y8-A8RZ-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 63f0d3c3-071e-44c7-863d-72f0242c5b93 2a0d89df-334c-4d21-ad1d-0040556032a0 . ARHGAP29 NM_004815 exon23 c.C3594A p.P1198P ACCGTGGGGATCG . 105.0 40.0 77.0 0.0 . 132 . . . none . . PASS Atlas-SNP BNIPL 149428 hgsc.bcm.edu hg19 1 151011013 151011013 + Silent SNP T T C novel TCGA-Y8-A8RZ-01A-11D-A36X-10 TCGA-Y8-A8RZ-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 63f0d3c3-071e-44c7-863d-72f0242c5b93 2a0d89df-334c-4d21-ad1d-0040556032a0 . BNIPL NM_138278 exon3 c.T171C p.D57D TGAAGATCCTGAA . 149.0 60.0 128.0 0.0 . 45 . . . none . . PASS Atlas-SNP CLK2 1196 hgsc.bcm.edu hg19 1 155238100 155238100 + Missense_Mutation SNP A A G novel TCGA-Y8-A8RZ-01A-11D-A36X-10 TCGA-Y8-A8RZ-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 63f0d3c3-071e-44c7-863d-72f0242c5b93 2a0d89df-334c-4d21-ad1d-0040556032a0 . CLK2 NM_003993 exon5 c.T535C p.C179R CAACACATTGTAC . 224.0 81.0 206.0 0.0 . 55 . . . none . . PASS Atlas-SNP BIRC6 57448 hgsc.bcm.edu hg19 2 32702603 32702603 + Silent SNP C C A novel TCGA-Y8-A8RZ-01A-11D-A36X-10 TCGA-Y8-A8RZ-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 63f0d3c3-071e-44c7-863d-72f0242c5b93 2a0d89df-334c-4d21-ad1d-0040556032a0 . BIRC6 NM_016252 exon35 c.C7020A p.L2340L TCTTCTCTCCATG . 149.0 56.0 121.0 0.0 . 838 . . . none . . PASS Atlas-SNP TCF7L1 83439 hgsc.bcm.edu hg19 2 85533645 85533645 + Missense_Mutation SNP C C T novel TCGA-Y8-A8RZ-01A-11D-A36X-10 TCGA-Y8-A8RZ-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 63f0d3c3-071e-44c7-863d-72f0242c5b93 2a0d89df-334c-4d21-ad1d-0040556032a0 . TCF7L1 NM_031283 exon10 c.C1220T p.S407L TTCACTCGCAGCT . 157.0 64.0 183.0 0.0 . 44 . . . none . . PASS Atlas-SNP CUL3 8452 hgsc.bcm.edu hg19 2 225378239 225378239 + Splice_Site SNP A A G novel TCGA-Y8-A8RZ-01A-11D-A36X-10 TCGA-Y8-A8RZ-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 63f0d3c3-071e-44c7-863d-72f0242c5b93 2a0d89df-334c-4d21-ad1d-0040556032a0 . CUL3 NM_003590 exon6 c.654+2T>C . CGGATTACCTGAA . 120.0 71.0 179.0 0.0 . 96 . . . none . . PASS Atlas-SNP RBM15B 29890 hgsc.bcm.edu hg19 3 51430385 51430385 + Missense_Mutation SNP C C G novel TCGA-Y8-A8RZ-01A-11D-A36X-10 TCGA-Y8-A8RZ-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 63f0d3c3-071e-44c7-863d-72f0242c5b93 2a0d89df-334c-4d21-ad1d-0040556032a0 . RBM15B NM_013286 exon1 c.C1555G p.R519G TACACCCGGCACC . 34.0 25.0 63.0 0.0 . 47 . . . none . . PASS Atlas-SNP BAP1 8314 hgsc.bcm.edu hg19 3 52437846 52437846 + Missense_Mutation SNP C C A novel TCGA-Y8-A8RZ-01A-11D-A36X-10 TCGA-Y8-A8RZ-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 63f0d3c3-071e-44c7-863d-72f0242c5b93 2a0d89df-334c-4d21-ad1d-0040556032a0 . BAP1 NM_004656 exon13 c.G1315T p.V439L GCAGCACTGACAG . 27.0 15.0 40.0 0.0 . 371 . . . none . . PASS Atlas-SNP ROBO1 6091 hgsc.bcm.edu hg19 3 78680444 78680444 + Missense_Mutation SNP G G T novel TCGA-Y8-A8RZ-01A-11D-A36X-10 TCGA-Y8-A8RZ-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 63f0d3c3-071e-44c7-863d-72f0242c5b93 2a0d89df-334c-4d21-ad1d-0040556032a0 . ROBO1 NM_002941 exon25 c.C3493A p.H1165N TCTTGTGCCCCTG . 36.0 24.0 70.0 0.0 . 833 . . . none . . PASS Atlas-SNP FOXL2 668 hgsc.bcm.edu hg19 3 138664642 138664642 + Missense_Mutation SNP G G C novel TCGA-Y8-A8RZ-01A-11D-A36X-10 TCGA-Y8-A8RZ-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 63f0d3c3-071e-44c7-863d-72f0242c5b93 2a0d89df-334c-4d21-ad1d-0040556032a0 . FOXL2 NM_023067 exon1 c.C923G p.A308G GGTGGGGCAGGCG . 19.0 10.0 35.0 0.0 . 408 . . . none . . PASS Atlas-SNP UVSSA 57654 hgsc.bcm.edu hg19 4 1379721 1379721 + Nonsense_Mutation SNP C C A novel TCGA-Y8-A8RZ-01A-11D-A36X-10 TCGA-Y8-A8RZ-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 63f0d3c3-071e-44c7-863d-72f0242c5b93 2a0d89df-334c-4d21-ad1d-0040556032a0 . . NM_020894 exon14 c.C2102A p.S701X AGTTTTCAAACCA . 91.0 32.0 111.0 0.0 . . . . . none . . PASS Atlas-SNP RAP1GDS1 5910 hgsc.bcm.edu hg19 4 99342409 99342409 + Missense_Mutation SNP A A G novel TCGA-Y8-A8RZ-01A-11D-A36X-10 TCGA-Y8-A8RZ-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 63f0d3c3-071e-44c7-863d-72f0242c5b93 2a0d89df-334c-4d21-ad1d-0040556032a0 . RAP1GDS1 NM_001100426 exon12 c.A1307G p.E436G TAGCAGAAGCTGC . 74.0 34.0 84.0 0.0 . 61 . . . none . . PASS Atlas-SNP KIAA1109 84162 hgsc.bcm.edu hg19 4 123255556 123255556 + Missense_Mutation SNP T T C novel TCGA-Y8-A8RZ-01A-11D-A36X-10 TCGA-Y8-A8RZ-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 63f0d3c3-071e-44c7-863d-72f0242c5b93 2a0d89df-334c-4d21-ad1d-0040556032a0 . KIAA1109 NM_015312 exon67 c.T11704C p.S3902P GGATCTTCCTTGC . 271.0 105.0 283.0 0.0 . 424 . . . none . . PASS Atlas-SNP STOX2 56977 hgsc.bcm.edu hg19 4 184930877 184930877 + Missense_Mutation SNP C C G novel TCGA-Y8-A8RZ-01A-11D-A36X-10 TCGA-Y8-A8RZ-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 63f0d3c3-071e-44c7-863d-72f0242c5b93 2a0d89df-334c-4d21-ad1d-0040556032a0 . STOX2 NM_020225 exon3 c.C886G p.P296A GAGTGGCCCCTGC . 96.0 32.0 99.0 0.0 . 142 . . . none . . PASS Atlas-SNP ZFR 51663 hgsc.bcm.edu hg19 5 32364329 32364329 + Missense_Mutation SNP C C A novel TCGA-Y8-A8RZ-01A-11D-A36X-10 TCGA-Y8-A8RZ-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 63f0d3c3-071e-44c7-863d-72f0242c5b93 2a0d89df-334c-4d21-ad1d-0040556032a0 . ZFR NM_016107 exon18 c.G2888T p.S963I CCAGGGCTCTGAG . 241.0 96.0 245.0 0.0 . 98 . . . none . . PASS Atlas-SNP C9 735 hgsc.bcm.edu hg19 5 39364500 39364500 + Missense_Mutation SNP A A G novel TCGA-Y8-A8RZ-01A-11D-A36X-10 TCGA-Y8-A8RZ-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 63f0d3c3-071e-44c7-863d-72f0242c5b93 2a0d89df-334c-4d21-ad1d-0040556032a0 . C9 NM_001737 exon1 c.T67C p.Y23H TCGTGTACTGTGC . 68.0 32.0 54.0 0.0 . 116 . . . none . . PASS Atlas-SNP FOXF2 2295 hgsc.bcm.edu hg19 6 1390659 1390659 + Missense_Mutation SNP C C G novel TCGA-Y8-A8RZ-01A-11D-A36X-10 TCGA-Y8-A8RZ-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 63f0d3c3-071e-44c7-863d-72f0242c5b93 2a0d89df-334c-4d21-ad1d-0040556032a0 . FOXF2 NM_001452 exon1 c.C477G p.I159M CTTCATCAAGCTG . 158.0 58.0 142.0 0.0 . 28 . . . none . . PASS Atlas-SNP CFB 629 hgsc.bcm.edu hg19 6 31916623 31916623 + Silent SNP A A G novel TCGA-Y8-A8RZ-01A-11D-A36X-10 TCGA-Y8-A8RZ-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 63f0d3c3-071e-44c7-863d-72f0242c5b93 2a0d89df-334c-4d21-ad1d-0040556032a0 . CFB NM_001710 exon8 c.A1053G p.S351S GAAGTCAGGGACT . 69.0 36.0 56.0 0.0 . 33 . . . none . . PASS Atlas-SNP TAF8 129685 hgsc.bcm.edu hg19 6 42044861 42044861 + Missense_Mutation SNP G G C novel TCGA-Y8-A8RZ-01A-11D-A36X-10 TCGA-Y8-A8RZ-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 63f0d3c3-071e-44c7-863d-72f0242c5b93 2a0d89df-334c-4d21-ad1d-0040556032a0 . TAF8 NM_138572 exon8 c.G804C p.E268D GAAGGAGAACACC . 146.0 51.0 146.0 0.0 . 25 . . . none . . PASS Atlas-SNP TAF8 129685 hgsc.bcm.edu hg19 6 42044862 42044862 + Missense_Mutation SNP A A T novel TCGA-Y8-A8RZ-01A-11D-A36X-10 TCGA-Y8-A8RZ-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 63f0d3c3-071e-44c7-863d-72f0242c5b93 2a0d89df-334c-4d21-ad1d-0040556032a0 . TAF8 NM_138572 exon8 c.A805T p.N269Y AAGGAGAACACCT . 146.0 51.0 146.0 0.0 . 25 . . . none . . PASS Atlas-SNP UTRN 7402 hgsc.bcm.edu hg19 6 144806574 144806574 + Silent SNP C C T novel TCGA-Y8-A8RZ-01A-11D-A36X-10 TCGA-Y8-A8RZ-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 63f0d3c3-071e-44c7-863d-72f0242c5b93 2a0d89df-334c-4d21-ad1d-0040556032a0 . UTRN NM_007124 exon27 c.C3741T p.T1247T AACTACCTGGTTA . 160.0 63.0 131.0 0.0 . 327 . . . none . . PASS Atlas-SNP STXBP5 134957 hgsc.bcm.edu hg19 6 147636834 147636834 + Missense_Mutation SNP G G A novel TCGA-Y8-A8RZ-01A-11D-A36X-10 TCGA-Y8-A8RZ-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 63f0d3c3-071e-44c7-863d-72f0242c5b93 2a0d89df-334c-4d21-ad1d-0040556032a0 . STXBP5 NM_139244 exon15 c.G1586A p.R529K TTTATAGATTCAG . 207.0 74.0 196.0 0.0 . 163 . . . none . . PASS Atlas-SNP SDK1 221935 hgsc.bcm.edu hg19 7 4051838 4051838 + Missense_Mutation SNP C C A novel TCGA-Y8-A8RZ-01A-11D-A36X-10 TCGA-Y8-A8RZ-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 63f0d3c3-071e-44c7-863d-72f0242c5b93 2a0d89df-334c-4d21-ad1d-0040556032a0 . SDK1 NM_152744 exon16 c.C2391A p.H797Q AGAGCACAACGGG . 57.0 17.0 58.0 0.0 . 361 . . . none . . PASS Atlas-SNP ELMO1 9844 hgsc.bcm.edu hg19 7 36895202 36895202 + Missense_Mutation SNP A A G novel TCGA-Y8-A8RZ-01A-11D-A36X-10 TCGA-Y8-A8RZ-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 63f0d3c3-071e-44c7-863d-72f0242c5b93 2a0d89df-334c-4d21-ad1d-0040556032a0 . ELMO1 NM_014800 exon22 c.T2138C p.I713T TTGGGAATCGGCG . 115.0 44.0 117.0 0.0 . 141 . . . none . . PASS Atlas-SNP IQUB 154865 hgsc.bcm.edu hg19 7 123143385 123143385 + Nonsense_Mutation SNP G G A novel TCGA-Y8-A8RZ-01A-11D-A36X-10 TCGA-Y8-A8RZ-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 63f0d3c3-071e-44c7-863d-72f0242c5b93 2a0d89df-334c-4d21-ad1d-0040556032a0 . IQUB NM_178827 exon4 c.C565T p.Q189X CATGTTGTACTAG . 132.0 49.0 102.0 0.0 . 117 . . . none . . PASS Atlas-SNP ZNF212 7988 hgsc.bcm.edu hg19 7 148947628 148947628 + Missense_Mutation SNP G G C novel TCGA-Y8-A8RZ-01A-11D-A36X-10 TCGA-Y8-A8RZ-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 63f0d3c3-071e-44c7-863d-72f0242c5b93 2a0d89df-334c-4d21-ad1d-0040556032a0 . ZNF212 NM_012256 exon2 c.G403C p.E135Q AAGGGGGAGGCCC . 59.0 20.0 53.0 0.0 . 28 . . . none . . PASS Atlas-SNP ZNF212 7988 hgsc.bcm.edu hg19 7 148947629 148947629 + Missense_Mutation SNP A A C novel TCGA-Y8-A8RZ-01A-11D-A36X-10 TCGA-Y8-A8RZ-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 63f0d3c3-071e-44c7-863d-72f0242c5b93 2a0d89df-334c-4d21-ad1d-0040556032a0 . ZNF212 NM_012256 exon2 c.A404C p.E135A AGGGGGAGGCCCC . 58.0 19.0 53.0 0.0 . 28 . . . none . . PASS Atlas-SNP NOM1 64434 hgsc.bcm.edu hg19 7 156759786 156759786 + Missense_Mutation SNP G G C novel TCGA-Y8-A8RZ-01A-11D-A36X-10 TCGA-Y8-A8RZ-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 63f0d3c3-071e-44c7-863d-72f0242c5b93 2a0d89df-334c-4d21-ad1d-0040556032a0 . NOM1 NM_138400 exon9 c.G2298C p.K766N CTTAAAGGTTCGT . 64.0 17.0 65.0 0.0 . 73 . . . none . . PASS Atlas-SNP GBA2 57704 hgsc.bcm.edu hg19 9 35740323 35740323 + Missense_Mutation SNP G G A novel TCGA-Y8-A8RZ-01A-11D-A36X-10 TCGA-Y8-A8RZ-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 63f0d3c3-071e-44c7-863d-72f0242c5b93 2a0d89df-334c-4d21-ad1d-0040556032a0 . GBA2 NM_020944 exon7 c.C1166T p.A389V GCTCCAGCAATGC . 55.0 16.0 54.0 0.0 . 77 . . . none . . PASS Atlas-SNP NUP214 8021 hgsc.bcm.edu hg19 9 134003841 134003841 + Missense_Mutation SNP T T A novel TCGA-Y8-A8RZ-01A-11D-A36X-10 TCGA-Y8-A8RZ-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 63f0d3c3-071e-44c7-863d-72f0242c5b93 2a0d89df-334c-4d21-ad1d-0040556032a0 . NUP214 NM_005085 exon3 c.T364A p.F122I ATTGCTTTTTTTG . 78.0 32.0 50.0 0.0 . 166 . . . none . . PASS Atlas-SNP GDF10 2662 hgsc.bcm.edu hg19 10 48426591 48426591 + Silent SNP C C A novel TCGA-Y8-A8RZ-01A-11D-A36X-10 TCGA-Y8-A8RZ-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 63f0d3c3-071e-44c7-863d-72f0242c5b93 2a0d89df-334c-4d21-ad1d-0040556032a0 . GDF10 NM_004962 exon3 c.G1416T p.V472V GGTGTCCACGGAC . 79.0 30.0 75.0 0.0 . 79 . . . none . . PASS Atlas-SNP OR5D16 390144 hgsc.bcm.edu hg19 11 55606280 55606280 + Missense_Mutation SNP G G C novel TCGA-Y8-A8RZ-01A-11D-A36X-10 TCGA-Y8-A8RZ-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 63f0d3c3-071e-44c7-863d-72f0242c5b93 2a0d89df-334c-4d21-ad1d-0040556032a0 . OR5D16 NM_001005496 exon1 c.G53C p.G18A TCTTGGGCTTCTC . 159.0 49.0 120.0 0.0 . 94 . . . none . . PASS Atlas-SNP TMEM179B 374395 hgsc.bcm.edu hg19 11 62556681 62556681 + Nonsense_Mutation SNP A A T novel TCGA-Y8-A8RZ-01A-11D-A36X-10 TCGA-Y8-A8RZ-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 63f0d3c3-071e-44c7-863d-72f0242c5b93 2a0d89df-334c-4d21-ad1d-0040556032a0 . TMEM179B NM_199337 exon2 c.A283T p.R95X TCCCACAGGTGAC . 72.0 28.0 64.0 0.0 . 13 . . . none . . PASS Atlas-SNP LRP5 4041 hgsc.bcm.edu hg19 11 68154171 68154171 + Missense_Mutation SNP C C T novel TCGA-Y8-A8RZ-01A-11D-A36X-10 TCGA-Y8-A8RZ-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 63f0d3c3-071e-44c7-863d-72f0242c5b93 2a0d89df-334c-4d21-ad1d-0040556032a0 . LRP5 NM_002335 exon6 c.C1403T p.P468L TGCACCCCGTGAT . 90.0 35.0 81.0 0.0 . 136 . . . none . . PASS Atlas-SNP PPP6R3 55291 hgsc.bcm.edu hg19 11 68377430 68377430 + Missense_Mutation SNP C C A novel TCGA-Y8-A8RZ-01A-11D-A36X-10 TCGA-Y8-A8RZ-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 63f0d3c3-071e-44c7-863d-72f0242c5b93 2a0d89df-334c-4d21-ad1d-0040556032a0 . PPP6R3 NM_001164160 exon24 c.C2527A p.P843T GAGTGTCCCGAGA . 91.0 49.0 69.0 0.0 . 159 . . . none . . PASS Atlas-SNP PIK3C2G 5288 hgsc.bcm.edu hg19 12 18699304 18699304 + Missense_Mutation SNP A A T novel TCGA-Y8-A8RZ-01A-11D-A36X-10 TCGA-Y8-A8RZ-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 63f0d3c3-071e-44c7-863d-72f0242c5b93 2a0d89df-334c-4d21-ad1d-0040556032a0 . PIK3C2G NM_004570 exon25 c.A3405T p.K1135N CCTGAAATATGTG . 125.0 56.0 129.0 0.0 . 315 . . . none . . PASS Atlas-SNP DENND5B 160518 hgsc.bcm.edu hg19 12 31633023 31633023 + Missense_Mutation SNP A A G novel TCGA-Y8-A8RZ-01A-11D-A36X-10 TCGA-Y8-A8RZ-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 63f0d3c3-071e-44c7-863d-72f0242c5b93 2a0d89df-334c-4d21-ad1d-0040556032a0 . DENND5B NM_144973 exon3 c.T404C p.L135P TGGTAAAGTGTCT . 103.0 44.0 101.0 0.0 . 114 . . . none . . PASS Atlas-SNP PDE1B 5153 hgsc.bcm.edu hg19 12 54964116 54964116 + Missense_Mutation SNP G G C novel TCGA-Y8-A8RZ-01A-11D-A36X-10 TCGA-Y8-A8RZ-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 63f0d3c3-071e-44c7-863d-72f0242c5b93 2a0d89df-334c-4d21-ad1d-0040556032a0 . PDE1B NM_000924 exon6 c.G569C p.R190P TGACTCGGCATAA . 72.0 19.0 50.0 0.0 . 76 . . . none . . PASS Atlas-SNP DCTN2 10540 hgsc.bcm.edu hg19 12 57925883 57925883 + Missense_Mutation SNP T T G novel TCGA-Y8-A8RZ-01A-11D-A36X-10 TCGA-Y8-A8RZ-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 63f0d3c3-071e-44c7-863d-72f0242c5b93 2a0d89df-334c-4d21-ad1d-0040556032a0 . DCTN2 NM_001261412 exon13 c.A1040C p.Q347P CCAAACTGCATGG . 127.0 49.0 169.0 0.0 . 51 . . . none . . PASS Atlas-SNP UBC 7316 hgsc.bcm.edu hg19 12 125398244 125398244 + Missense_Mutation SNP T T C novel TCGA-Y8-A8RZ-01A-11D-A36X-10 TCGA-Y8-A8RZ-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 63f0d3c3-071e-44c7-863d-72f0242c5b93 2a0d89df-334c-4d21-ad1d-0040556032a0 . UBC NM_021009 exon2 c.A74G p.N25S TTGACATTCTCGA . 105.0 39.0 136.0 0.0 . 79 . . . none . . PASS Atlas-SNP POLE 5426 hgsc.bcm.edu hg19 12 133252404 133252404 + Silent SNP A A G novel TCGA-Y8-A8RZ-01A-11D-A36X-10 TCGA-Y8-A8RZ-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 63f0d3c3-071e-44c7-863d-72f0242c5b93 2a0d89df-334c-4d21-ad1d-0040556032a0 . POLE NM_006231 exon11 c.T1023C p.A341A CAGATGAGCCTGA . 80.0 23.0 87.0 0.0 . 416 . . . none . . PASS Atlas-SNP INTS6 26512 hgsc.bcm.edu hg19 13 51952382 51952382 + Missense_Mutation SNP A A G novel TCGA-Y8-A8RZ-01A-11D-A36X-10 TCGA-Y8-A8RZ-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 63f0d3c3-071e-44c7-863d-72f0242c5b93 2a0d89df-334c-4d21-ad1d-0040556032a0 . INTS6 NM_012141 exon12 c.T1595C p.L532P TTATTCAGCAAAG . 110.0 38.0 86.0 0.0 . 72 . . . none . . PASS Atlas-SNP SCFD1 23256 hgsc.bcm.edu hg19 14 31164021 31164021 + Missense_Mutation SNP A A T novel TCGA-Y8-A8RZ-01A-11D-A36X-10 TCGA-Y8-A8RZ-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 63f0d3c3-071e-44c7-863d-72f0242c5b93 2a0d89df-334c-4d21-ad1d-0040556032a0 . SCFD1 NM_016106 exon15 c.A1285T p.M429L AAAATAATGAGCA . 347.0 129.0 339.0 0.0 . 43 . . . none . . PASS Atlas-SNP AKAP13 11214 hgsc.bcm.edu hg19 15 86122543 86122543 + Missense_Mutation SNP T T C novel TCGA-Y8-A8RZ-01A-11D-A36X-10 TCGA-Y8-A8RZ-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 63f0d3c3-071e-44c7-863d-72f0242c5b93 2a0d89df-334c-4d21-ad1d-0040556032a0 . AKAP13 NM_007200 exon7 c.T1244C p.L415P AAGGCCTTTCGTC . 140.0 42.0 152.0 0.0 . 394 . . . none . . PASS Atlas-SNP CNGB1 1258 hgsc.bcm.edu hg19 16 57984325 57984325 + Missense_Mutation SNP C C T novel TCGA-Y8-A8RZ-01A-11D-A36X-10 TCGA-Y8-A8RZ-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 63f0d3c3-071e-44c7-863d-72f0242c5b93 2a0d89df-334c-4d21-ad1d-0040556032a0 . CNGB1 NM_001297 exon13 c.G994A p.A332T CATAAGCTGGAAC . 88.0 37.0 74.0 0.0 . 105 . . . none . . PASS Atlas-SNP NF1 4763 hgsc.bcm.edu hg19 17 29527522 29527522 + Missense_Mutation SNP G G C novel TCGA-Y8-A8RZ-01A-11D-A36X-10 TCGA-Y8-A8RZ-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 63f0d3c3-071e-44c7-863d-72f0242c5b93 2a0d89df-334c-4d21-ad1d-0040556032a0 . NF1 NM_001128147 exon9 c.G971C p.C324S TTGCCTGTGTCAA . 98.0 35.0 86.0 0.0 . 1586 . . . none . . PASS Atlas-SNP ABCC3 8714 hgsc.bcm.edu hg19 17 48738388 48738388 + Missense_Mutation SNP T T A novel TCGA-Y8-A8RZ-01A-11D-A36X-10 TCGA-Y8-A8RZ-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 63f0d3c3-071e-44c7-863d-72f0242c5b93 2a0d89df-334c-4d21-ad1d-0040556032a0 . ABCC3 NM_003786 exon8 c.T911A p.L304Q CCCTGCTGGCCAC . 65.0 27.0 43.0 0.0 . 138 . . . none . . PASS Atlas-SNP SMURF2 64750 hgsc.bcm.edu hg19 17 62542409 62542409 + Missense_Mutation SNP T T C novel TCGA-Y8-A8RZ-01A-11D-A36X-10 TCGA-Y8-A8RZ-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 63f0d3c3-071e-44c7-863d-72f0242c5b93 2a0d89df-334c-4d21-ad1d-0040556032a0 . SMURF2 NM_022739 exon18 c.A2119G p.T707A TGTTAGTGCAGGC . 91.0 38.0 86.0 0.0 . 63 . . . none . . PASS Atlas-SNP HGS 9146 hgsc.bcm.edu hg19 17 79660684 79660684 + Silent SNP C C T novel TCGA-Y8-A8RZ-01A-11D-A36X-10 TCGA-Y8-A8RZ-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 63f0d3c3-071e-44c7-863d-72f0242c5b93 2a0d89df-334c-4d21-ad1d-0040556032a0 . HGS NM_004712 exon10 c.C742T p.L248L CCTCAGCTGCCCC . 115.0 5.0 117.0 0.0 . 54 . . . none . . PASS Atlas-SNP APCDD1 147495 hgsc.bcm.edu hg19 18 10471923 10471923 + Silent SNP G G C novel TCGA-Y8-A8RZ-01A-11D-A36X-10 TCGA-Y8-A8RZ-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 63f0d3c3-071e-44c7-863d-72f0242c5b93 2a0d89df-334c-4d21-ad1d-0040556032a0 . APCDD1 NM_153000 exon3 c.G639C p.R213R CATCCGGGTGGAG . 110.0 39.0 91.0 0.0 . 57 . . . none . . PASS Atlas-SNP KANK3 256949 hgsc.bcm.edu hg19 19 8389663 8389663 + Missense_Mutation SNP C C T novel TCGA-Y8-A8RZ-01A-11D-A36X-10 TCGA-Y8-A8RZ-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 63f0d3c3-071e-44c7-863d-72f0242c5b93 2a0d89df-334c-4d21-ad1d-0040556032a0 . KANK3 NM_198471 exon9 c.G2134A p.V712M TTGCCACCATGTC . 68.0 25.0 42.0 0.0 . 35 . . . none . . PASS Atlas-SNP TMED1 11018 hgsc.bcm.edu hg19 19 10945667 10945667 + Silent SNP T T C novel TCGA-Y8-A8RZ-01A-11D-A36X-10 TCGA-Y8-A8RZ-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 63f0d3c3-071e-44c7-863d-72f0242c5b93 2a0d89df-334c-4d21-ad1d-0040556032a0 . TMED1 NM_006858 exon3 c.A408G p.G136G TGCCCATCCTTCG . 88.0 37.0 69.0 0.0 . 22 . . . none . . PASS Atlas-SNP USP29 57663 hgsc.bcm.edu hg19 19 57642200 57642200 + Silent SNP A A G novel TCGA-Y8-A8RZ-01A-11D-A36X-10 TCGA-Y8-A8RZ-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 63f0d3c3-071e-44c7-863d-72f0242c5b93 2a0d89df-334c-4d21-ad1d-0040556032a0 USP29,caecum,carcinoma,0,2 USP29 NM_020903 exon4 c.A2157G p.K719K CTGTAAAGAAAAC . 236.0 95.0 231.0 0.0 . 186 . . . none . . PASS Atlas-SNP ZNF544 27300 hgsc.bcm.edu hg19 19 58772847 58772847 + Missense_Mutation SNP A A C novel TCGA-Y8-A8RZ-01A-11D-A36X-10 TCGA-Y8-A8RZ-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 63f0d3c3-071e-44c7-863d-72f0242c5b93 2a0d89df-334c-4d21-ad1d-0040556032a0 . ZNF544 NM_014480 exon7 c.A875C p.H292P CAGTGCATTTTGG . 122.0 51.0 137.0 0.0 . 57 . . . none . . PASS Atlas-SNP PCSK2 5126 hgsc.bcm.edu hg19 20 17462589 17462589 + Silent SNP C C T novel TCGA-Y8-A8RZ-01A-11D-A36X-10 TCGA-Y8-A8RZ-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 63f0d3c3-071e-44c7-863d-72f0242c5b93 2a0d89df-334c-4d21-ad1d-0040556032a0 . PCSK2 NM_002594 exon12 c.C1791T p.A597A GAGTGCCCCGTAC . 105.0 46.0 122.0 0.0 . 112 . . . none . . PASS Atlas-SNP MAGEA4 4103 hgsc.bcm.edu hg19 X 151092151 151092151 + Silent SNP G G A novel TCGA-Y8-A8RZ-01A-11D-A36X-10 TCGA-Y8-A8RZ-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 63f0d3c3-071e-44c7-863d-72f0242c5b93 2a0d89df-334c-4d21-ad1d-0040556032a0 . MAGEA4 NM_001011548 exon3 c.G15A p.Q5Q TGAGCAGAAGAGT . 95.0 54.0 114.0 0.0 . 68 . . . none . . PASS Atlas-SNP CLCN7 1186 hgsc.bcm.edu hg19 16 1505758 1505760 + In_Frame_Del DEL AGA AGA - novel TCGA-Y8-A8RZ-01A-11D-A36X-10 TCGA-Y8-A8RZ-10A-01D-A370-10 AGA AGA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 63f0d3c3-071e-44c7-863d-72f0242c5b93 2a0d89df-334c-4d21-ad1d-0040556032a0 . CLCN7 NM_001287 exon11 c.954_956del p.318_319del . . 70.0 25.0 70.0 0.0 . 53 . 0.357143 0 none . . PASS Atlas-Indel,Pindel NPR2 4882 hgsc.bcm.edu hg19 9 35808792 35808794 + In_Frame_Del DEL TTA TTA - novel TCGA-Y8-A8RZ-01A-11D-A36X-10 TCGA-Y8-A8RZ-10A-01D-A370-10 TTA TTA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 63f0d3c3-071e-44c7-863d-72f0242c5b93 2a0d89df-334c-4d21-ad1d-0040556032a0 . NPR2 NM_003995 exon20 c.2927_2929del p.976_977del . . 100.0 41.0 127.0 0.0 . 162 . 0.41 0 none . . PASS Atlas-Indel,Pindel GCSAM 257144 hgsc.bcm.edu hg19 3 111849299 111849306 + Frame_Shift_Del DEL TTCTCTGT TTCTCTGT - novel TCGA-Y8-A8RZ-01A-11D-A36X-10 TCGA-Y8-A8RZ-10A-01D-A370-10 TTCTCTGT TTCTCTGT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 63f0d3c3-071e-44c7-863d-72f0242c5b93 2a0d89df-334c-4d21-ad1d-0040556032a0 . . NM_001190259 exon2 c.91_98del p.31_33del . . 47.0 10.0 61.0 0.0 . . . 0.213 . none . . PASS Pindel