Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq TVarRat NVarRat dbSNP_Strength dbSNP_AF dbSNP_PopFreq Confidence Algorithm COL11A1 1301 hgsc.bcm.edu hg19 1 103470193 103470193 + Missense_Mutation SNP G G C novel TCGA-UZ-A9PN-01A-11D-A382-10 TCGA-UZ-A9PN-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 206e9cb3-201a-42f0-9d9e-4477dfe96585 9d87e73d-61d7-487c-9e1b-4dbc1285612b . COL11A1 NM_080629 exon19 c.C1906G p.P636A GACCTGGAGGACC . 504.0 112.0 501.0 0.0 . 972 . . . none . . PASS Atlas-SNP NPR1 4881 hgsc.bcm.edu hg19 1 153651789 153651789 + Missense_Mutation SNP C C T novel TCGA-UZ-A9PN-01A-11D-A382-10 TCGA-UZ-A9PN-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 206e9cb3-201a-42f0-9d9e-4477dfe96585 9d87e73d-61d7-487c-9e1b-4dbc1285612b . NPR1 NM_000906 exon1 c.C205T p.R69C AAGGCGCGCCCCG . 48.0 12.0 60.0 0.0 . 104 . . . none . . PASS Atlas-SNP IQGAP3 128239 hgsc.bcm.edu hg19 1 156524143 156524143 + Silent SNP G G T novel TCGA-UZ-A9PN-01A-11D-A382-10 TCGA-UZ-A9PN-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 206e9cb3-201a-42f0-9d9e-4477dfe96585 9d87e73d-61d7-487c-9e1b-4dbc1285612b . IQGAP3 NM_178229 exon13 c.C1332A p.L444L AGCTGAGAGCATC . 160.0 24.0 177.0 0.0 . 146 . . . none . . PASS Atlas-SNP CACNA1S 779 hgsc.bcm.edu hg19 1 201030418 201030418 + Missense_Mutation SNP T T G novel TCGA-UZ-A9PN-01A-11D-A382-10 TCGA-UZ-A9PN-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 206e9cb3-201a-42f0-9d9e-4477dfe96585 9d87e73d-61d7-487c-9e1b-4dbc1285612b . CACNA1S NM_000069 exon25 c.A3232C p.N1078H CACAGTTCTTGTA . 76.0 14.0 102.0 0.0 . 249 . . . none . . PASS Atlas-SNP NVL 4931 hgsc.bcm.edu hg19 1 224424263 224424263 + Missense_Mutation SNP C C A novel TCGA-UZ-A9PN-01A-11D-A382-10 TCGA-UZ-A9PN-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 206e9cb3-201a-42f0-9d9e-4477dfe96585 9d87e73d-61d7-487c-9e1b-4dbc1285612b . NVL NM_002533 exon20 c.G2311T p.D771Y CTGCATCCAGTGG . 169.0 51.0 191.0 0.0 . 74 . . . none . . PASS Atlas-SNP CNTNAP5 129684 hgsc.bcm.edu hg19 2 125405388 125405388 + Missense_Mutation SNP C C T rs200795882 bycluster TCGA-UZ-A9PN-01A-11D-A382-10 TCGA-UZ-A9PN-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 206e9cb3-201a-42f0-9d9e-4477dfe96585 9d87e73d-61d7-487c-9e1b-4dbc1285612b CNTNAP5,caecum,carcinoma,0,2 CNTNAP5 NM_130773 exon13 c.C1927T p.R643W CGAGTGCGGGGCG . 273.0 72.0 297.0 0.0 . 405 . . . weak . . PASS Atlas-SNP LRP1B 53353 hgsc.bcm.edu hg19 2 141598582 141598582 + Silent SNP C C T rs373983727 TCGA-UZ-A9PN-01A-11D-A382-10 TCGA-UZ-A9PN-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 206e9cb3-201a-42f0-9d9e-4477dfe96585 9d87e73d-61d7-487c-9e1b-4dbc1285612b . LRP1B NM_018557 exon30 c.G5019A p.T1673T AATTTGCGTTTCA . 86.0 13.0 109.0 0.0 . 1315 . . . weak . . PASS Atlas-SNP ANKRD44 91526 hgsc.bcm.edu hg19 2 197870520 197870520 + Missense_Mutation SNP C C T rs150303870 bycluster TCGA-UZ-A9PN-01A-11D-A382-10 TCGA-UZ-A9PN-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 206e9cb3-201a-42f0-9d9e-4477dfe96585 9d87e73d-61d7-487c-9e1b-4dbc1285612b . ANKRD44 NM_001195144 exon21 c.G2245A p.A749T ACGTGGCGTGGCC . 160.0 40.0 183.0 0.0 . 281 . . . weak C|1.000;T|0.000 0.000 PASS Atlas-SNP GIGYF2 26058 hgsc.bcm.edu hg19 2 233651983 233651983 + Missense_Mutation SNP G G T novel TCGA-UZ-A9PN-01A-11D-A382-10 TCGA-UZ-A9PN-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 206e9cb3-201a-42f0-9d9e-4477dfe96585 9d87e73d-61d7-487c-9e1b-4dbc1285612b . GIGYF2 NM_001103147 exon11 c.G722T p.G241V ATGGAGGTTGGCG . 123.0 37.0 136.0 0.0 . 288 . . . none . . PASS Atlas-SNP UGT1A10 54575 hgsc.bcm.edu hg19 2 234545301 234545301 + Missense_Mutation SNP G G A rs371430642 alternate_allele TCGA-UZ-A9PN-01A-11D-A382-10 TCGA-UZ-A9PN-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 206e9cb3-201a-42f0-9d9e-4477dfe96585 9d87e73d-61d7-487c-9e1b-4dbc1285612b . UGT1A10 NM_019075 exon1 c.G133A p.V45M TCGGTGGTGGAGA . 77.0 22.0 115.0 0.0 . 71 . . . alt . . PASS Atlas-SNP C4orf3 401152 hgsc.bcm.edu hg19 4 120221731 120221731 + Missense_Mutation SNP T T C novel TCGA-UZ-A9PN-01A-11D-A382-10 TCGA-UZ-A9PN-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 206e9cb3-201a-42f0-9d9e-4477dfe96585 9d87e73d-61d7-487c-9e1b-4dbc1285612b . C4orf3 NM_001170330 exon2 c.A359G p.H120R CGAAAATGCTTAA . 53.0 8.0 69.0 0.0 . 16 . . . none . . PASS Atlas-SNP NNT 23530 hgsc.bcm.edu hg19 5 43624161 43624161 + Missense_Mutation SNP G G A novel TCGA-UZ-A9PN-01A-11D-A382-10 TCGA-UZ-A9PN-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 206e9cb3-201a-42f0-9d9e-4477dfe96585 9d87e73d-61d7-487c-9e1b-4dbc1285612b . NNT NM_182977 exon6 c.G715A p.G239R GTTGCTGGGCTTG . 95.0 22.0 123.0 0.0 . 92 . . . none . . PASS Atlas-SNP HNRNPA0 10949 hgsc.bcm.edu hg19 5 137088931 137088931 + Silent SNP G G A novel TCGA-UZ-A9PN-01A-11D-A382-10 TCGA-UZ-A9PN-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 206e9cb3-201a-42f0-9d9e-4477dfe96585 9d87e73d-61d7-487c-9e1b-4dbc1285612b HNRNPA0,colon,carcinoma,0,1 HNRNPA0 NM_006805 exon1 c.C825T p.G275G TCCACCGCCGCCG . 80.0 4.0 97.0 0.0 . 17 . . . none . . PASS Atlas-SNP PCDHB15 56121 hgsc.bcm.edu hg19 5 140626523 140626523 + Silent SNP C C T novel TCGA-UZ-A9PN-01A-11D-A382-10 TCGA-UZ-A9PN-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 206e9cb3-201a-42f0-9d9e-4477dfe96585 9d87e73d-61d7-487c-9e1b-4dbc1285612b . PCDHB15 NM_018935 exon1 c.C1377T p.F459F CCTGTTCGTCCGC . 91.0 19.0 121.0 0.0 . 138 . . . none . . PASS Atlas-SNP C5orf45 51149 hgsc.bcm.edu hg19 5 179267940 179267940 + Missense_Mutation SNP C C T rs112467347 bycluster TCGA-UZ-A9PN-01A-11D-A382-10 TCGA-UZ-A9PN-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 206e9cb3-201a-42f0-9d9e-4477dfe96585 9d87e73d-61d7-487c-9e1b-4dbc1285612b C5orf45,NS,carcinoma,0,1 C5orf45 NM_016175 exon6 c.G469A p.V157I GCTGGACGGTGCT . 76.0 20.0 84.0 0.0 . 23 . . . weak C|0.500;T|0.500 0.500 PASS Atlas-SNP HIVEP1 3096 hgsc.bcm.edu hg19 6 12163682 12163682 + Missense_Mutation SNP G G A novel TCGA-UZ-A9PN-01A-11D-A382-10 TCGA-UZ-A9PN-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 206e9cb3-201a-42f0-9d9e-4477dfe96585 9d87e73d-61d7-487c-9e1b-4dbc1285612b . HIVEP1 NM_002114 exon9 c.G7145A p.S2382N TGTTTAGCCACCT . 77.0 10.0 93.0 0.0 . 242 . . . none . . PASS Atlas-SNP DAXX 1616 hgsc.bcm.edu hg19 6 33289303 33289303 + Silent SNP C C T novel TCGA-UZ-A9PN-01A-11D-A382-10 TCGA-UZ-A9PN-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 206e9cb3-201a-42f0-9d9e-4477dfe96585 9d87e73d-61d7-487c-9e1b-4dbc1285612b . DAXX NM_001141970 exon3 c.G285A p.E95E GACCACCTCAGGG . 112.0 24.0 109.0 0.0 . 111 . . . none . . PASS Atlas-SNP ASCC3 10973 hgsc.bcm.edu hg19 6 101109798 101109798 + Missense_Mutation SNP C C T novel TCGA-UZ-A9PN-01A-11D-A382-10 TCGA-UZ-A9PN-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 206e9cb3-201a-42f0-9d9e-4477dfe96585 9d87e73d-61d7-487c-9e1b-4dbc1285612b . ASCC3 NM_006828 exon16 c.G2587A p.E863K TTCCTTCCCCAAA . 102.0 21.0 106.0 0.0 . 205 . . . none . . PASS Atlas-SNP COL1A2 1278 hgsc.bcm.edu hg19 7 94041426 94041426 + Missense_Mutation SNP G G T novel TCGA-UZ-A9PN-01A-11D-A382-10 TCGA-UZ-A9PN-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 206e9cb3-201a-42f0-9d9e-4477dfe96585 9d87e73d-61d7-487c-9e1b-4dbc1285612b . COL1A2 NM_000089 exon24 c.G1397T p.G466V AAGAAGGTCCTGT . 165.0 32.0 135.0 0.0 . 240 . . . none . . PASS Atlas-SNP TMEM229A 730130 hgsc.bcm.edu hg19 7 123672479 123672479 + Silent SNP C C T novel TCGA-UZ-A9PN-01A-11D-A382-10 TCGA-UZ-A9PN-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 206e9cb3-201a-42f0-9d9e-4477dfe96585 9d87e73d-61d7-487c-9e1b-4dbc1285612b . TMEM229A NM_001136002 exon1 c.G579A p.Q193Q CTGCTGCTGCTGT . 60.0 5.0 55.0 0.0 . 31 . . . none . . PASS Atlas-SNP ST18 9705 hgsc.bcm.edu hg19 8 53025847 53025847 + Missense_Mutation SNP T T C novel TCGA-UZ-A9PN-01A-11D-A382-10 TCGA-UZ-A9PN-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 206e9cb3-201a-42f0-9d9e-4477dfe96585 9d87e73d-61d7-487c-9e1b-4dbc1285612b . ST18 NM_014682 exon26 c.A3055G p.M1019V TGTACATATCTGT . 80.0 16.0 130.0 0.0 . 212 . . . none . . PASS Atlas-SNP TOPORS 10210 hgsc.bcm.edu hg19 9 32542179 32542179 + Missense_Mutation SNP T T C novel TCGA-UZ-A9PN-01A-11D-A382-10 TCGA-UZ-A9PN-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 206e9cb3-201a-42f0-9d9e-4477dfe96585 9d87e73d-61d7-487c-9e1b-4dbc1285612b . TOPORS NM_005802 exon3 c.A2344G p.T782A TCCCGGTAGATGC . 134.0 24.0 166.0 0.0 . 127 . . . none . . PASS Atlas-SNP SPIN1 10927 hgsc.bcm.edu hg19 9 91041456 91041456 + Missense_Mutation SNP T T A novel TCGA-UZ-A9PN-01A-11D-A382-10 TCGA-UZ-A9PN-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 206e9cb3-201a-42f0-9d9e-4477dfe96585 9d87e73d-61d7-487c-9e1b-4dbc1285612b . SPIN1 NM_006717 exon2 c.T2A p.M1K GATGAATGAAGAC . 460.0 120.0 504.0 0.0 . 22 . . . none . . PASS Atlas-SNP CERCAM 51148 hgsc.bcm.edu hg19 9 131183331 131183331 + Missense_Mutation SNP C C T novel TCGA-UZ-A9PN-01A-11D-A382-10 TCGA-UZ-A9PN-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 206e9cb3-201a-42f0-9d9e-4477dfe96585 9d87e73d-61d7-487c-9e1b-4dbc1285612b . CERCAM NM_016174 exon1 c.C175T p.P59S GACTACCCCCGGG . 34.0 9.0 83.0 0.0 . 104 . . . none . . PASS Atlas-SNP PDHX 8050 hgsc.bcm.edu hg19 11 35006233 35006233 + Silent SNP T T C novel TCGA-UZ-A9PN-01A-11D-A382-10 TCGA-UZ-A9PN-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 206e9cb3-201a-42f0-9d9e-4477dfe96585 9d87e73d-61d7-487c-9e1b-4dbc1285612b . PDHX NM_003477 exon9 c.T1140C p.D380D AAAAGATGCTGCT . 88.0 18.0 145.0 0.0 . 40 . . . none . . PASS Atlas-SNP GLYAT 10249 hgsc.bcm.edu hg19 11 58477502 58477502 + Missense_Mutation SNP G G T novel TCGA-UZ-A9PN-01A-11D-A382-10 TCGA-UZ-A9PN-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 206e9cb3-201a-42f0-9d9e-4477dfe96585 9d87e73d-61d7-487c-9e1b-4dbc1285612b . GLYAT NM_201648 exon6 c.C628A p.L210M GCCCCAGGAGACA . 118.0 21.0 115.0 0.0 . 53 . . . none . . PASS Atlas-SNP GPR137 56834 hgsc.bcm.edu hg19 11 64056714 64056714 + Missense_Mutation SNP C C A novel TCGA-UZ-A9PN-01A-11D-A382-10 TCGA-UZ-A9PN-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 206e9cb3-201a-42f0-9d9e-4477dfe96585 9d87e73d-61d7-487c-9e1b-4dbc1285612b . GPR137 NM_001170726 exon9 c.C1305A p.H435Q CCCTCACCCTAGG . 157.0 13.0 123.0 0.0 . 52 . . . none . . PASS Atlas-SNP TWF1 5756 hgsc.bcm.edu hg19 12 44198327 44198327 + Missense_Mutation SNP T T C novel TCGA-UZ-A9PN-01A-11D-A382-10 TCGA-UZ-A9PN-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 206e9cb3-201a-42f0-9d9e-4477dfe96585 9d87e73d-61d7-487c-9e1b-4dbc1285612b TWF1,NS,carcinoma,0,1 TWF1 NM_002822 exon2 c.A74G p.Y25C AGTCTGTACTTTC . 461.0 106.0 501.0 0.0 . 37 . . . none . . PASS Atlas-SNP HOXC6 3223 hgsc.bcm.edu hg19 12 54422350 54422350 + Silent SNP C C T novel TCGA-UZ-A9PN-01A-11D-A382-10 TCGA-UZ-A9PN-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 206e9cb3-201a-42f0-9d9e-4477dfe96585 9d87e73d-61d7-487c-9e1b-4dbc1285612b . HOXC6 NM_004503 exon1 c.C45T p.A15A CCTCGCCGGGGGC . 168.0 43.0 164.0 0.0 . 30 . . . none . . PASS Atlas-SNP ERBB3 2065 hgsc.bcm.edu hg19 12 56495550 56495550 + Missense_Mutation SNP C C T novel TCGA-UZ-A9PN-01A-11D-A382-10 TCGA-UZ-A9PN-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 206e9cb3-201a-42f0-9d9e-4477dfe96585 9d87e73d-61d7-487c-9e1b-4dbc1285612b . ERBB3 NM_001982 exon28 c.C3740T p.P1247L CTGTACCCATCAT . 99.0 21.0 100.0 0.0 . 350 . . . none . . PASS Atlas-SNP STAB2 55576 hgsc.bcm.edu hg19 12 104056744 104056744 + Nonsense_Mutation SNP C C T novel TCGA-UZ-A9PN-01A-11D-A382-10 TCGA-UZ-A9PN-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 206e9cb3-201a-42f0-9d9e-4477dfe96585 9d87e73d-61d7-487c-9e1b-4dbc1285612b STAB2,NS,carcinoma,0,1 STAB2 NM_017564 exon18 c.C1990T p.R664X CCCCATCGATGTG . 153.0 51.0 149.0 1.0 . 370 . . . none . . PASS Atlas-SNP ZNF770 54989 hgsc.bcm.edu hg19 15 35275396 35275396 + Silent SNP A A G novel TCGA-UZ-A9PN-01A-11D-A382-10 TCGA-UZ-A9PN-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 206e9cb3-201a-42f0-9d9e-4477dfe96585 9d87e73d-61d7-487c-9e1b-4dbc1285612b . ZNF770 NM_014106 exon3 c.T240C p.P80P TTTAAAAGGCAGA . 77.0 21.0 65.0 0.0 . 64 . . . none . . PASS Atlas-SNP SH3GL3 6457 hgsc.bcm.edu hg19 15 84228033 84228033 + Missense_Mutation SNP A A C novel TCGA-UZ-A9PN-01A-11D-A382-10 TCGA-UZ-A9PN-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 206e9cb3-201a-42f0-9d9e-4477dfe96585 9d87e73d-61d7-487c-9e1b-4dbc1285612b . SH3GL3 NM_003027 exon2 c.A74C p.E25A GTGCTGAAGGAAC . 325.0 65.0 307.0 0.0 . 91 . . . none . . PASS Atlas-SNP AGBL1 123624 hgsc.bcm.edu hg19 15 87089231 87089231 + Splice_Site SNP A A G novel TCGA-UZ-A9PN-01A-11D-A382-10 TCGA-UZ-A9PN-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 206e9cb3-201a-42f0-9d9e-4477dfe96585 9d87e73d-61d7-487c-9e1b-4dbc1285612b . AGBL1 NM_152336 exon19 c.2548-2A>G . TATTGTAGGTTTT . 97.0 21.0 99.0 0.0 . 151 . . . none . . PASS Atlas-SNP RHBDL1 9028 hgsc.bcm.edu hg19 16 727363 727363 + Silent SNP G G A novel TCGA-UZ-A9PN-01A-11D-A382-10 TCGA-UZ-A9PN-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 206e9cb3-201a-42f0-9d9e-4477dfe96585 9d87e73d-61d7-487c-9e1b-4dbc1285612b . RHBDL1 NM_003961 exon4 c.G858A p.L286L CAGCCTGCTCTAC . 73.0 19.0 54.0 0.0 . 14 . . . none . . PASS Atlas-SNP DCTPP1 79077 hgsc.bcm.edu hg19 16 30435726 30435726 + Missense_Mutation SNP A A T novel TCGA-UZ-A9PN-01A-11D-A382-10 TCGA-UZ-A9PN-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 206e9cb3-201a-42f0-9d9e-4477dfe96585 9d87e73d-61d7-487c-9e1b-4dbc1285612b . DCTPP1 NM_024096 exon3 c.T341A p.L114Q AGCGGCAGATCCA . 66.0 19.0 73.0 0.0 . 12 . . . none . . PASS Atlas-SNP NFATC3 4775 hgsc.bcm.edu hg19 16 68248266 68248266 + Silent SNP A A G novel TCGA-UZ-A9PN-01A-11D-A382-10 TCGA-UZ-A9PN-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 206e9cb3-201a-42f0-9d9e-4477dfe96585 9d87e73d-61d7-487c-9e1b-4dbc1285612b . NFATC3 NM_004555 exon10 c.A3141G p.S1047S GCCATCAGGTTCA . 89.0 22.0 117.0 0.0 . 190 . . . none . . PASS Atlas-SNP SLC25A11 8402 hgsc.bcm.edu hg19 17 4842400 4842400 + Missense_Mutation SNP A A T novel TCGA-UZ-A9PN-01A-11D-A382-10 TCGA-UZ-A9PN-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 206e9cb3-201a-42f0-9d9e-4477dfe96585 9d87e73d-61d7-487c-9e1b-4dbc1285612b . SLC25A11 NM_003562 exon2 c.T203A p.L68H CTGGTGAGGGCAT . 92.0 17.0 111.0 0.0 . 22 . . . none . . PASS Atlas-SNP TMUB2 79089 hgsc.bcm.edu hg19 17 42267972 42267972 + Missense_Mutation SNP T T A novel TCGA-UZ-A9PN-01A-11D-A382-10 TCGA-UZ-A9PN-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 206e9cb3-201a-42f0-9d9e-4477dfe96585 9d87e73d-61d7-487c-9e1b-4dbc1285612b . TMUB2 NM_001076674 exon4 c.T706A p.C236S GACAACTGTGTGA . 100.0 25.0 89.0 0.0 . 29 . . . none . . PASS Atlas-SNP TNRC6C 57690 hgsc.bcm.edu hg19 17 76089791 76089791 + Missense_Mutation SNP C C G novel TCGA-UZ-A9PN-01A-11D-A382-10 TCGA-UZ-A9PN-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 206e9cb3-201a-42f0-9d9e-4477dfe96585 9d87e73d-61d7-487c-9e1b-4dbc1285612b . TNRC6C NM_018996 exon17 c.C4253G p.P1418R CTGGGCCTACCAT . 103.0 31.0 89.0 0.0 . 173 . . . none . . PASS Atlas-SNP SETBP1 26040 hgsc.bcm.edu hg19 18 42529882 42529882 + Missense_Mutation SNP T T A novel TCGA-UZ-A9PN-01A-11D-A382-10 TCGA-UZ-A9PN-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 206e9cb3-201a-42f0-9d9e-4477dfe96585 9d87e73d-61d7-487c-9e1b-4dbc1285612b . SETBP1 NM_015559 exon4 c.T577A p.Y193N CTCCATTATGACA . 75.0 19.0 77.0 0.0 . 577 . . . none . . PASS Atlas-SNP TMX3 54495 hgsc.bcm.edu hg19 18 66365251 66365251 + Missense_Mutation SNP A A G novel TCGA-UZ-A9PN-01A-11D-A382-10 TCGA-UZ-A9PN-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 206e9cb3-201a-42f0-9d9e-4477dfe96585 9d87e73d-61d7-487c-9e1b-4dbc1285612b . TMX3 NM_019022 exon7 c.T410C p.L137P CTTGGAAGTGGCC . 57.0 14.0 55.0 0.0 . 44 . . . none . . PASS Atlas-SNP MFSD12 126321 hgsc.bcm.edu hg19 19 3544832 3544832 + Silent SNP C C T novel TCGA-UZ-A9PN-01A-11D-A382-10 TCGA-UZ-A9PN-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 206e9cb3-201a-42f0-9d9e-4477dfe96585 9d87e73d-61d7-487c-9e1b-4dbc1285612b . MFSD12 NM_001042680 exon9 c.G1395A p.L465L CCACAGCAGGAGG . 34.0 19.0 66.0 0.0 . 22 . . . none . . PASS Atlas-SNP BRD4 23476 hgsc.bcm.edu hg19 19 15350822 15350822 + Missense_Mutation SNP C C T rs200902225 TCGA-UZ-A9PN-01A-11D-A382-10 TCGA-UZ-A9PN-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 206e9cb3-201a-42f0-9d9e-4477dfe96585 9d87e73d-61d7-487c-9e1b-4dbc1285612b . BRD4 NM_058243 exon15 c.G3181A p.E1061K GGGCTTCGCGGAG . 45.0 17.0 63.0 0.0 . 172 . . . weak . . PASS Atlas-SNP AKT2 208 hgsc.bcm.edu hg19 19 40743897 40743897 + Missense_Mutation SNP G G T rs150206349 alternate_allele TCGA-UZ-A9PN-01A-11D-A382-10 TCGA-UZ-A9PN-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 206e9cb3-201a-42f0-9d9e-4477dfe96585 9d87e73d-61d7-487c-9e1b-4dbc1285612b . AKT2 NM_001626 exon9 c.C810A p.D270E TACCACGTCCCGC . 48.0 13.0 75.0 0.0 . 53 . . . alt G|1.000;A|0.000 . PASS Atlas-SNP PRR12 57479 hgsc.bcm.edu hg19 19 50104787 50104787 + Missense_Mutation SNP C C G novel TCGA-UZ-A9PN-01A-11D-A382-10 TCGA-UZ-A9PN-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 206e9cb3-201a-42f0-9d9e-4477dfe96585 9d87e73d-61d7-487c-9e1b-4dbc1285612b . PRR12 NM_020719 exon6 c.C4385G p.P1462R CTCCACCTCCTGC . 76.0 17.0 126.0 0.0 . 157 . . . none . . PASS Atlas-SNP TNNT1 7138 hgsc.bcm.edu hg19 19 55656921 55656921 + Missense_Mutation SNP G G T novel TCGA-UZ-A9PN-01A-11D-A382-10 TCGA-UZ-A9PN-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 206e9cb3-201a-42f0-9d9e-4477dfe96585 9d87e73d-61d7-487c-9e1b-4dbc1285612b TNNT1,NS,carcinoma,0,2 TNNT1 NM_001126132 exon6 c.C119A p.P40H GGTTTGGGGCGTT . 70.0 3.0 106.0 0.0 . 28 . . . none . . PASS Atlas-SNP RPL28 6158 hgsc.bcm.edu hg19 19 55897936 55897936 + Splice_Site SNP A A G novel TCGA-UZ-A9PN-01A-11D-A382-10 TCGA-UZ-A9PN-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 206e9cb3-201a-42f0-9d9e-4477dfe96585 9d87e73d-61d7-487c-9e1b-4dbc1285612b . RPL28 NM_001136137 exon3 c.82-2A>G . CTTCCCAGGAGCC . 85.0 23.0 137.0 0.0 . 31 . . . none . . PASS Atlas-SNP OGFR 11054 hgsc.bcm.edu hg19 20 61443936 61443936 + Silent SNP C C A novel TCGA-UZ-A9PN-01A-11D-A382-10 TCGA-UZ-A9PN-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 206e9cb3-201a-42f0-9d9e-4477dfe96585 9d87e73d-61d7-487c-9e1b-4dbc1285612b . OGFR NM_007346 exon7 c.C969A p.A323A CGAGGCCAGCACC . 177.0 35.0 215.0 0.0 . 63 . . . none . . PASS Atlas-SNP KRTAP10-8 386681 hgsc.bcm.edu hg19 21 46032797 46032797 + Missense_Mutation SNP A A T novel TCGA-UZ-A9PN-01A-11D-A382-10 TCGA-UZ-A9PN-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 206e9cb3-201a-42f0-9d9e-4477dfe96585 9d87e73d-61d7-487c-9e1b-4dbc1285612b . KRTAP10-8 NM_198695 exon1 c.A780T p.X260C CTGCTGAGGCCTC . 24.0 11.0 48.0 0.0 . 34 . . . none . . PASS Atlas-SNP NLGN4X 57502 hgsc.bcm.edu hg19 X 5811459 5811459 + Missense_Mutation SNP T T G novel TCGA-UZ-A9PN-01A-11D-A382-10 TCGA-UZ-A9PN-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 206e9cb3-201a-42f0-9d9e-4477dfe96585 9d87e73d-61d7-487c-9e1b-4dbc1285612b . NLGN4X NM_181332 exon6 c.A1850C p.D617A GTCATGTCTGGTG . 216.0 95.0 251.0 1.0 . 191 . . . none . . PASS Atlas-SNP PPP1R3F 89801 hgsc.bcm.edu hg19 X 49143255 49143255 + Silent SNP G G A novel TCGA-UZ-A9PN-01A-11D-A382-10 TCGA-UZ-A9PN-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 206e9cb3-201a-42f0-9d9e-4477dfe96585 9d87e73d-61d7-487c-9e1b-4dbc1285612b . PPP1R3F NM_033215 exon4 c.G2103A p.G701G GCAGGGGCAAAAT . 98.0 52.0 102.0 0.0 . 56 . . . none . . PASS Atlas-SNP ND1 10625 hgsc.bcm.edu hg19 MT 4136 4136 + Missense_Mutation SNP A A G novel TCGA-UZ-A9PN-01A-11D-A382-10 TCGA-UZ-A9PN-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 206e9cb3-201a-42f0-9d9e-4477dfe96585 9d87e73d-61d7-487c-9e1b-4dbc1285612b . . ENST00000361390 exon1 c.A830G p.Y277C CAGCATACCCCCG . 83.0 5.0 25.0 0.0 . . . . . none . . PASS Atlas-SNP ATP6 0 hgsc.bcm.edu hg19 MT 8760 8760 + Silent SNP T T C novel TCGA-UZ-A9PN-01A-11D-A382-10 TCGA-UZ-A9PN-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 206e9cb3-201a-42f0-9d9e-4477dfe96585 9d87e73d-61d7-487c-9e1b-4dbc1285612b . . ENST00000361899 exon1 c.T234C p.F78F CATTTTTATTGCC . 92.0 5.0 30.0 0.0 . . . . . none . . PASS Atlas-SNP ND4 0 hgsc.bcm.edu hg19 MT 10993 10993 + Silent SNP G G A novel TCGA-UZ-A9PN-01A-11D-A382-10 TCGA-UZ-A9PN-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 206e9cb3-201a-42f0-9d9e-4477dfe96585 9d87e73d-61d7-487c-9e1b-4dbc1285612b . . ENST00000361381 exon1 c.G234A p.M78M AATCATGGCAAGC . 105.0 14.0 29.0 0.0 . . . . . none . . PASS Atlas-SNP SLC46A1 113235 hgsc.bcm.edu hg19 17 26729265 26729266 + Frame_Shift_Del DEL TC TC - novel TCGA-UZ-A9PN-01A-11D-A382-10 TCGA-UZ-A9PN-10A-01D-A385-10 TC TC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 206e9cb3-201a-42f0-9d9e-4477dfe96585 9d87e73d-61d7-487c-9e1b-4dbc1285612b . SLC46A1 NM_080669 exon3 c.1156_1157del p.386_386del . . 87.0 15.0 102.0 0.0 . 17 . 0.172414 0 none . . PASS Atlas-Indel,Pindel AGK 55750 hgsc.bcm.edu hg19 7 141352709 141352709 + Frame_Shift_Del DEL A A - novel TCGA-UZ-A9PN-01A-11D-A382-10 TCGA-UZ-A9PN-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 206e9cb3-201a-42f0-9d9e-4477dfe96585 9d87e73d-61d7-487c-9e1b-4dbc1285612b AGK,NS,carcinoma,0,1 AGK NM_018238 exon16 c.1253delC p.T418fs . . 67.0 14.0 74.0 0.0 . 43 . 0.208955 0 none . . PASS Atlas-Indel,Pindel FAM171A2 284069 hgsc.bcm.edu hg19 17 42437453 42437453 + Frame_Shift_Del DEL G G - novel TCGA-UZ-A9PN-01A-11D-A382-10 TCGA-UZ-A9PN-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 206e9cb3-201a-42f0-9d9e-4477dfe96585 9d87e73d-61d7-487c-9e1b-4dbc1285612b . FAM171A2 NM_198475 exon2 c.167delT p.L56fs . . 122.0 33.0 161.0 0.0 . 13 . 0.270492 0 none . . PASS Atlas-Indel,Pindel CAMK2N2 94032 hgsc.bcm.edu hg19 3 183979036 183979036 + Frame_Shift_Del DEL C C - novel TCGA-UZ-A9PN-01A-11D-A382-10 TCGA-UZ-A9PN-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 206e9cb3-201a-42f0-9d9e-4477dfe96585 9d87e73d-61d7-487c-9e1b-4dbc1285612b . CAMK2N2 NM_033259 exon1 c.39delC p.G13fs . . 105.0 40.0 115.0 0.0 . 2 . 0.380952 0 none . . PASS Atlas-Indel,Pindel TRIM13 10206 hgsc.bcm.edu hg19 13 50589218 50589250 + RNA DEL AAAAAAAAAAAAAATATATATATATATATATAT AAAAAAAAAAAAAATATATATATATATATATAT - novel TCGA-UZ-A9PN-01A-11D-A382-10 TCGA-UZ-A9PN-10A-01D-A385-10 AAAAAAAAAAAAAATATATATATATATATATAT AAAAAAAAAAAAAATATATATATATATATATAT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 206e9cb3-201a-42f0-9d9e-4477dfe96585 9d87e73d-61d7-487c-9e1b-4dbc1285612b . TRIM13 . . . . . . 22.0 10.0 20.0 0.0 . 30 . 0.454545 0 none . . PASS Atlas-INDEL B4GALT2 8704 hgsc.bcm.edu hg19 1 44450687 44450687 + Frame_Shift_Del DEL C C - novel TCGA-UZ-A9PN-01A-11D-A382-10 TCGA-UZ-A9PN-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 206e9cb3-201a-42f0-9d9e-4477dfe96585 9d87e73d-61d7-487c-9e1b-4dbc1285612b B4GALT2_ENST00000309519,NS,carcinoma,0,2 B4GALT2 NM_030587 exon4 c.786delA p.Q262fs . . 46.0 11.0 65.0 0.0 . 35 . 0.23913 0 none . . PASS Atlas-INDEL SPTBN5 51332 hgsc.bcm.edu hg19 15 42148681 42148682 + Frame_Shift_Ins INS - - G novel TCGA-UZ-A9PN-01A-11D-A382-10 TCGA-UZ-A9PN-10A-01D-A385-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 206e9cb3-201a-42f0-9d9e-4477dfe96585 9d87e73d-61d7-487c-9e1b-4dbc1285612b . SPTBN5 NM_016642 exon53 c.8819_8820insC p.Q2940fs . . 73.0 16.0 80.0 0.0 . 171 . 0.219178 0 none . . PASS Atlas-Indel,Pindel RELA 5970 hgsc.bcm.edu hg19 11 65422254 65422277 + In_Frame_Del DEL AGGGCCTGGGGCTAGGACTGGGAC AGGGCCTGGGGCTAGGACTGGGAC - novel TCGA-UZ-A9PN-01A-11D-A382-10 TCGA-UZ-A9PN-10A-01D-A385-10 AGGGCCTGGGGCTAGGACTGGGAC AGGGCCTGGGGCTAGGACTGGGAC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 206e9cb3-201a-42f0-9d9e-4477dfe96585 9d87e73d-61d7-487c-9e1b-4dbc1285612b . RELA NM_021975 exon11 c.1229_1252del p.410_418del . . 110.0 17.0 146.0 0.0 . 44 . 0.154545 0 none . . PASS Atlas-Indel,Pindel TOMM40L 84134 hgsc.bcm.edu hg19 1 161198533 161198536 + Frame_Shift_Del DEL ACAC ACAC - novel TCGA-UZ-A9PN-01A-11D-A382-10 TCGA-UZ-A9PN-10A-01D-A385-10 ACAC ACAC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 206e9cb3-201a-42f0-9d9e-4477dfe96585 9d87e73d-61d7-487c-9e1b-4dbc1285612b . TOMM40L NM_032174 exon9 c.712_715del p.238_239del . . 109.0 26.0 144.0 0.0 . 19 . 0.238532 0 none . . PASS Atlas-Indel,Pindel DNAH14 127602 hgsc.bcm.edu hg19 1 225267076 225267077 + Frame_Shift_Ins INS - - ATTTCAGAAGAGCAAATTGCCATATTCCAAGTTCTTCTTCTTAAGTTTAGTCA novel TCGA-UZ-A9PN-01A-11D-A382-10 TCGA-UZ-A9PN-10A-01D-A385-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 206e9cb3-201a-42f0-9d9e-4477dfe96585 9d87e73d-61d7-487c-9e1b-4dbc1285612b . DNAH14 NM_001373 exon18 c.2592_2593insATTTCAGAAGAGCAAATTGCCATATTCCAAGTTCTTCTTCTTAAGTTTAGTCA p.H864fs . . 441.0 29.0 422.0 0.0 . 300 . 0.066 . none . . PASS Pindel