Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
CDC14A	8556	hgsc.bcm.edu	hg19	1	100856289	100856289	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UN-AAZ9-01A-11D-A382-10	TCGA-UN-AAZ9-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c956b4f3-cd21-4ff0-8b37-32cd8da4ea6a	5295faa5-5eb5-4e32-abfe-7c9e1d725be6	.	CDC14A	NM_033313	exon4	c.C218T	p.S73L	TCTAGTCATACAG	.	62.0	47.0	57.0	0.0	.	65	.	.	.	none	.	.	PASS	Atlas-SNP
TRH	7200	hgsc.bcm.edu	hg19	3	129695840	129695840	+	Silent	SNP	G	G	A	novel		TCGA-UN-AAZ9-01A-11D-A382-10	TCGA-UN-AAZ9-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c956b4f3-cd21-4ff0-8b37-32cd8da4ea6a	5295faa5-5eb5-4e32-abfe-7c9e1d725be6	TRH,right_upper_lobe,carcinoma,0,2	TRH	NM_007117	exon3	c.G510A	p.E170E	AGAAGAGGAGGAG	.	80.0	4.0	52.0	0.0	.	30	.	.	.	none	.	.	PASS	Atlas-SNP
SLC7A14	57709	hgsc.bcm.edu	hg19	3	170244698	170244698	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UN-AAZ9-01A-11D-A382-10	TCGA-UN-AAZ9-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c956b4f3-cd21-4ff0-8b37-32cd8da4ea6a	5295faa5-5eb5-4e32-abfe-7c9e1d725be6	.	SLC7A14	NM_020949	exon2	c.C28A	p.P10T	GCCGGGGGTCCAG	.	93.0	28.0	63.0	0.0	.	110	.	.	.	none	.	.	PASS	Atlas-SNP
MSH3	4437	hgsc.bcm.edu	hg19	5	79950745	79950745	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UN-AAZ9-01A-11D-A382-10	TCGA-UN-AAZ9-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c956b4f3-cd21-4ff0-8b37-32cd8da4ea6a	5295faa5-5eb5-4e32-abfe-7c9e1d725be6	MSH3,NS,carcinoma,0,1	MSH3	NM_002439	exon1	c.C199G	p.P67A	GCGCCCCCAGCTC	.	70.0	23.0	27.0	0.0	.	129	.	.	.	none	.	.	PASS	Atlas-SNP
EPB41L4A	64097	hgsc.bcm.edu	hg19	5	111602024	111602024	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-UN-AAZ9-01A-11D-A382-10	TCGA-UN-AAZ9-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c956b4f3-cd21-4ff0-8b37-32cd8da4ea6a	5295faa5-5eb5-4e32-abfe-7c9e1d725be6	.	EPB41L4A	NM_022140	exon5	c.T339A	p.Y113X	AAACTGATATCTA	.	684.0	190.0	454.0	0.0	.	130	.	.	.	none	.	.	PASS	Atlas-SNP
TRIM36	55521	hgsc.bcm.edu	hg19	5	114462477	114462477	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UN-AAZ9-01A-11D-A382-10	TCGA-UN-AAZ9-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c956b4f3-cd21-4ff0-8b37-32cd8da4ea6a	5295faa5-5eb5-4e32-abfe-7c9e1d725be6	.	TRIM36	NM_018700	exon10	c.C1910G	p.T637S	CCTATAGTAACTA	.	193.0	70.0	100.0	0.0	.	126	.	.	.	none	.	.	PASS	Atlas-SNP
RFX6	222546	hgsc.bcm.edu	hg19	6	117237249	117237249	+	Splice_Site	SNP	G	G	A	novel		TCGA-UN-AAZ9-01A-11D-A382-10	TCGA-UN-AAZ9-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c956b4f3-cd21-4ff0-8b37-32cd8da4ea6a	5295faa5-5eb5-4e32-abfe-7c9e1d725be6	.	RFX6	NM_173560	exon8	c.858+1G>A	.	GAAGAGGTAAGAA	.	57.0	44.0	84.0	0.0	.	141	.	.	.	none	.	.	PASS	Atlas-SNP
GPR158	57512	hgsc.bcm.edu	hg19	10	25464395	25464395	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-UN-AAZ9-01A-11D-A382-10	TCGA-UN-AAZ9-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c956b4f3-cd21-4ff0-8b37-32cd8da4ea6a	5295faa5-5eb5-4e32-abfe-7c9e1d725be6	.	GPR158	NM_020752	exon1	c.C46T	p.Q16X	CTTGCTCAGCTGG	.	105.0	42.0	55.0	0.0	.	255	.	.	.	none	.	.	PASS	Atlas-SNP
ARHGEF25	115557	hgsc.bcm.edu	hg19	12	58006909	58006909	+	Silent	SNP	T	T	A	novel		TCGA-UN-AAZ9-01A-11D-A382-10	TCGA-UN-AAZ9-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c956b4f3-cd21-4ff0-8b37-32cd8da4ea6a	5295faa5-5eb5-4e32-abfe-7c9e1d725be6	.	ARHGEF25	NM_001111270	exon3	c.T411A	p.G137G	CAGTGGTCAGGCA	.	94.0	42.0	54.0	0.0	.	111	.	.	.	none	.	.	PASS	Atlas-SNP
CHFR	55743	hgsc.bcm.edu	hg19	12	133428243	133428243	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UN-AAZ9-01A-11D-A382-10	TCGA-UN-AAZ9-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c956b4f3-cd21-4ff0-8b37-32cd8da4ea6a	5295faa5-5eb5-4e32-abfe-7c9e1d725be6	.	CHFR	NM_001161344	exon12	c.G1489C	p.A497P	GCTCCGCTCTCCG	.	114.0	43.0	60.0	0.0	.	83	.	.	.	none	.	.	PASS	Atlas-SNP
KIAA0247	9766	hgsc.bcm.edu	hg19	14	70171432	70171432	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UN-AAZ9-01A-11D-A382-10	TCGA-UN-AAZ9-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c956b4f3-cd21-4ff0-8b37-32cd8da4ea6a	5295faa5-5eb5-4e32-abfe-7c9e1d725be6	.	KIAA0247	NM_014734	exon4	c.C431G	p.P144R	TGCAGCCAAAGCT	.	52.0	45.0	62.0	0.0	.	30	.	.	.	none	.	.	PASS	Atlas-SNP
SNRPA1	6627	hgsc.bcm.edu	hg19	15	101827180	101827180	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UN-AAZ9-01A-11D-A382-10	TCGA-UN-AAZ9-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c956b4f3-cd21-4ff0-8b37-32cd8da4ea6a	5295faa5-5eb5-4e32-abfe-7c9e1d725be6	.	SNRPA1	NM_003090	exon5	c.A392G	p.Y131C	AATCTGTAATGCT	.	52.0	16.0	51.0	0.0	.	11	.	.	.	none	.	.	PASS	Atlas-SNP
CCDC64B	146439	hgsc.bcm.edu	hg19	16	3079566	3079566	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UN-AAZ9-01A-11D-A382-10	TCGA-UN-AAZ9-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c956b4f3-cd21-4ff0-8b37-32cd8da4ea6a	5295faa5-5eb5-4e32-abfe-7c9e1d725be6	.	CCDC64B	NM_001103175	exon5	c.G937A	p.D313N	GTGCGTCGGCGCC	.	89.0	41.0	45.0	0.0	.	19	.	.	.	none	.	.	PASS	Atlas-SNP
FBXL19	54620	hgsc.bcm.edu	hg19	16	30953551	30953551	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UN-AAZ9-01A-11D-A382-10	TCGA-UN-AAZ9-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c956b4f3-cd21-4ff0-8b37-32cd8da4ea6a	5295faa5-5eb5-4e32-abfe-7c9e1d725be6	.	FBXL19	NM_001099784	exon8	c.G1476T	p.W492C	CAGCTGGACAGGT	.	63.0	32.0	55.0	0.0	.	74	.	.	.	none	.	.	PASS	Atlas-SNP
SERPINF1	5176	hgsc.bcm.edu	hg19	17	1675238	1675238	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UN-AAZ9-01A-11D-A382-10	TCGA-UN-AAZ9-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c956b4f3-cd21-4ff0-8b37-32cd8da4ea6a	5295faa5-5eb5-4e32-abfe-7c9e1d725be6	.	SERPINF1	NM_002615	exon5	c.G512A	p.G171D	TGACGGGCAACCC	.	114.0	53.0	77.0	0.0	.	31	.	.	.	none	.	.	PASS	Atlas-SNP
OR1A1	8383	hgsc.bcm.edu	hg19	17	3119721	3119721	+	Silent	SNP	C	C	T	novel		TCGA-UN-AAZ9-01A-11D-A382-10	TCGA-UN-AAZ9-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c956b4f3-cd21-4ff0-8b37-32cd8da4ea6a	5295faa5-5eb5-4e32-abfe-7c9e1d725be6	OR1A1,NS,carcinoma,0,1	OR1A1	NM_014565	exon1	c.C807T	p.D269D	AAAAGACGCAGTG	.	164.0	7.0	123.0	0.0	.	54	.	.	.	none	.	.	PASS	Atlas-SNP
PER1	5187	hgsc.bcm.edu	hg19	17	8045218	8045218	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-UN-AAZ9-01A-11D-A382-10	TCGA-UN-AAZ9-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c956b4f3-cd21-4ff0-8b37-32cd8da4ea6a	5295faa5-5eb5-4e32-abfe-7c9e1d725be6	.	PER1	NM_002616	exon22	c.C3505T	p.Q1169X	GCTGCTGCTTCTG	.	87.0	38.0	63.0	0.0	.	104	.	.	.	none	.	.	PASS	Atlas-SNP
MYO18A	399687	hgsc.bcm.edu	hg19	17	27447674	27447674	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UN-AAZ9-01A-11D-A382-10	TCGA-UN-AAZ9-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c956b4f3-cd21-4ff0-8b37-32cd8da4ea6a	5295faa5-5eb5-4e32-abfe-7c9e1d725be6	.	MYO18A	NM_078471	exon7	c.A1688T	p.D563V	TCAAAGTCCAGGG	.	226.0	88.0	140.0	0.0	.	217	.	.	.	none	.	.	PASS	Atlas-SNP
FTCD	10841	hgsc.bcm.edu	hg19	21	47565766	47565766	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UN-AAZ9-01A-11D-A382-10	TCGA-UN-AAZ9-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c956b4f3-cd21-4ff0-8b37-32cd8da4ea6a	5295faa5-5eb5-4e32-abfe-7c9e1d725be6	.	FTCD	NM_206965	exon9	c.G1064C	p.G355A	CCGCCCCCGGGGG	.	563.0	256.0	261.0	0.0	.	59	.	.	.	none	.	.	PASS	Atlas-SNP
SUPT20HL1	100130302	hgsc.bcm.edu	hg19	X	24382384	24382384	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UN-AAZ9-01A-11D-A382-10	TCGA-UN-AAZ9-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c956b4f3-cd21-4ff0-8b37-32cd8da4ea6a	5295faa5-5eb5-4e32-abfe-7c9e1d725be6	.	.	NM_001136234	exon1	c.G1507A	p.A503T	GCTGCTGCTGCTG	.	216.0	22.0	218.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
DOCK11	139818	hgsc.bcm.edu	hg19	X	117817167	117817167	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UN-AAZ9-01A-11D-A382-10	TCGA-UN-AAZ9-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c956b4f3-cd21-4ff0-8b37-32cd8da4ea6a	5295faa5-5eb5-4e32-abfe-7c9e1d725be6	.	DOCK11	NM_144658	exon52	c.T6089G	p.I2030S	CTGACATTATCCA	.	450.0	345.0	466.0	0.0	.	185	.	.	.	none	.	.	PASS	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179505994	179505999	+	In_Frame_Del	DEL	TTTTTA	TTTTTA	-	novel		TCGA-UN-AAZ9-01A-11D-A382-10	TCGA-UN-AAZ9-10A-01D-A385-10	TTTTTA	TTTTTA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c956b4f3-cd21-4ff0-8b37-32cd8da4ea6a	5295faa5-5eb5-4e32-abfe-7c9e1d725be6	.	TTN	NM_001267550	exon220	c.40603_40608del	p.13535_13536del	.	.	128.0	48.0	125.0	0.0	.	18412	.	0.375	0	none	.	.	PASS	Atlas-Indel,Pindel
FOXC1	2296	hgsc.bcm.edu	hg19	6	1611915	1611916	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-UN-AAZ9-01A-11D-A382-10	TCGA-UN-AAZ9-10A-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c956b4f3-cd21-4ff0-8b37-32cd8da4ea6a	5295faa5-5eb5-4e32-abfe-7c9e1d725be6	.	FOXC1	NM_001453	exon1	c.1235_1236insG	p.L412fs	.	.	61.0	50.0	43.0	0.0	.	19	.	0.819672	0	none	.	.	PASS	Atlas-Indel,Pindel
CENPF	1063	hgsc.bcm.edu	hg19	1	214819565	214819565	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-UN-AAZ9-01A-11D-A382-10	TCGA-UN-AAZ9-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c956b4f3-cd21-4ff0-8b37-32cd8da4ea6a	5295faa5-5eb5-4e32-abfe-7c9e1d725be6	.	CENPF	NM_016343	exon13	c.6651delA	p.K2217fs	.	.	286.0	240.0	299.0	0.0	.	321	.	0.839161	0	none	.	.	PASS	Atlas-Indel,Pindel
HRASLS5	117245	hgsc.bcm.edu	hg19	11	63258431	63258432	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-UN-AAZ9-01A-11D-A382-10	TCGA-UN-AAZ9-10A-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c956b4f3-cd21-4ff0-8b37-32cd8da4ea6a	5295faa5-5eb5-4e32-abfe-7c9e1d725be6	.	HRASLS5	NM_001146728	exon1	c.76_77insC	p.A26fs	.	.	189.0	13.0	109.0	0.0	.	28	.	0.0687831	0	none	.	.	PASS	Atlas-INDEL