Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq TVarRat NVarRat dbSNP_Strength dbSNP_AF dbSNP_PopFreq Confidence Algorithm DMAP1 55929 hgsc.bcm.edu hg19 1 44680529 44680529 + Missense_Mutation SNP G G A novel TCGA-SX-A7SU-01A-11D-A35Z-10 TCGA-SX-A7SU-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 06de0d9e-db97-4250-a774-fa0f4eabbe74 7d1da0d0-0c30-4440-b607-036215cc6509 . DMAP1 NM_001034023 exon4 c.G352A p.A118T CGTGCAGCGGAGG . 150.0 60.0 106.0 0.0 . 35 . . . none . . PASS Atlas-SNP OTUD7B 56957 hgsc.bcm.edu hg19 1 149916007 149916007 + Missense_Mutation SNP T T C novel TCGA-SX-A7SU-01A-11D-A35Z-10 TCGA-SX-A7SU-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 06de0d9e-db97-4250-a774-fa0f4eabbe74 7d1da0d0-0c30-4440-b607-036215cc6509 . OTUD7B NM_020205 exon12 c.A2281G p.R761G CACCCCTGTGAAG . 60.0 27.0 37.0 0.0 . 76 . . . none . . PASS Atlas-SNP HNRPLL 92906 hgsc.bcm.edu hg19 2 38812820 38812820 + Missense_Mutation SNP A A T novel TCGA-SX-A7SU-01A-11D-A35Z-10 TCGA-SX-A7SU-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 06de0d9e-db97-4250-a774-fa0f4eabbe74 7d1da0d0-0c30-4440-b607-036215cc6509 . HNRPLL NM_138394 exon3 c.T512A p.L171H ATTGAGAGCAGAA . 145.0 67.0 75.0 0.0 . 19 . . . none . . PASS Atlas-SNP TTLL4 9654 hgsc.bcm.edu hg19 2 219619110 219619110 + Missense_Mutation SNP T T A novel TCGA-SX-A7SU-01A-11D-A35Z-10 TCGA-SX-A7SU-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 06de0d9e-db97-4250-a774-fa0f4eabbe74 7d1da0d0-0c30-4440-b607-036215cc6509 . TTLL4 NM_014640 exon20 c.T3598A p.X1200K AGCCCATAACTGG . 93.0 36.0 81.0 0.0 . 96 . . . none . . PASS Atlas-SNP IMPG2 50939 hgsc.bcm.edu hg19 3 100964931 100964931 + Missense_Mutation SNP C C T novel TCGA-SX-A7SU-01A-11D-A35Z-10 TCGA-SX-A7SU-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 06de0d9e-db97-4250-a774-fa0f4eabbe74 7d1da0d0-0c30-4440-b607-036215cc6509 . IMPG2 NM_016247 exon12 c.G1258A p.A420T GCCATGCAGCTTG . 146.0 6.0 63.0 0.0 . 164 . . . none . . PASS Atlas-SNP SPATA16 83893 hgsc.bcm.edu hg19 3 172835337 172835337 + Missense_Mutation SNP C C A novel TCGA-SX-A7SU-01A-11D-A35Z-10 TCGA-SX-A7SU-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 06de0d9e-db97-4250-a774-fa0f4eabbe74 7d1da0d0-0c30-4440-b607-036215cc6509 . SPATA16 NM_031955 exon2 c.G185T p.R62I TTTGTTCTTTCAA . 132.0 46.0 102.0 0.0 . 111 . . . none . . PASS Atlas-SNP PPP1R2 5504 hgsc.bcm.edu hg19 3 195250521 195250521 + Silent SNP C C T novel TCGA-SX-A7SU-01A-11D-A35Z-10 TCGA-SX-A7SU-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 06de0d9e-db97-4250-a774-fa0f4eabbe74 7d1da0d0-0c30-4440-b607-036215cc6509 . PPP1R2 NM_006241 exon4 c.G372A p.E124E ATCCTCCTCTCCA . 105.0 42.0 71.0 0.0 . 11 . . . none . . PASS Atlas-SNP FRYL 285527 hgsc.bcm.edu hg19 4 48552657 48552657 + Missense_Mutation SNP C C G novel TCGA-SX-A7SU-01A-11D-A35Z-10 TCGA-SX-A7SU-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 06de0d9e-db97-4250-a774-fa0f4eabbe74 7d1da0d0-0c30-4440-b607-036215cc6509 . FRYL NM_015030 exon38 c.G4585C p.E1529Q GGGATTCTAGTCT . 51.0 19.0 28.0 0.0 . 242 . . . none . . PASS Atlas-SNP CCSER1 401145 hgsc.bcm.edu hg19 4 91321220 91321220 + Missense_Mutation SNP G G A novel TCGA-SX-A7SU-01A-11D-A35Z-10 TCGA-SX-A7SU-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 06de0d9e-db97-4250-a774-fa0f4eabbe74 7d1da0d0-0c30-4440-b607-036215cc6509 FAM190A_ENST00000509176,colon,carcinoma,0,3 . NM_001145065 exon4 c.G1543A p.D515N GAACTGGATGAAG . 119.0 48.0 79.0 0.0 . . . . . none . . PASS Atlas-SNP CCSER1 401145 hgsc.bcm.edu hg19 4 91321221 91321221 + Missense_Mutation SNP A A C novel TCGA-SX-A7SU-01A-11D-A35Z-10 TCGA-SX-A7SU-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 06de0d9e-db97-4250-a774-fa0f4eabbe74 7d1da0d0-0c30-4440-b607-036215cc6509 FAM190A_ENST00000509176,colon,carcinoma,+1,12 . NM_001145065 exon4 c.A1544C p.D515A AACTGGATGAAGA . 118.0 47.0 79.0 0.0 . . . . . none . . PASS Atlas-SNP FRG1 2483 hgsc.bcm.edu hg19 4 190884267 190884267 + Missense_Mutation SNP G G A rs373037319 TCGA-SX-A7SU-01A-11D-A35Z-10 TCGA-SX-A7SU-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 06de0d9e-db97-4250-a774-fa0f4eabbe74 7d1da0d0-0c30-4440-b607-036215cc6509 FRG1,middle_lobe,carcinoma,0,1 FRG1 NM_004477 exon9 c.G760A p.D254N AAAGCCGACAGAT . 54.0 5.0 32.0 0.0 . 76 . . . weak . . PASS Atlas-SNP C5orf55 116349 hgsc.bcm.edu hg19 5 442810 442810 + Missense_Mutation SNP C C T novel TCGA-SX-A7SU-01A-11D-A35Z-10 TCGA-SX-A7SU-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 06de0d9e-db97-4250-a774-fa0f4eabbe74 7d1da0d0-0c30-4440-b607-036215cc6509 . C5orf55 NM_138464 exon1 c.G128A p.G43E TGATTCCCAACCT . 103.0 41.0 56.0 0.0 . 11 . . . none . . PASS Atlas-SNP COL4A3BP 10087 hgsc.bcm.edu hg19 5 74677819 74677819 + Silent SNP T T C novel TCGA-SX-A7SU-01A-11D-A35Z-10 TCGA-SX-A7SU-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 06de0d9e-db97-4250-a774-fa0f4eabbe74 7d1da0d0-0c30-4440-b607-036215cc6509 . COL4A3BP NM_001130105 exon16 c.A1956G p.E652E CCAAGTTTCAGGG . 339.0 146.0 161.0 0.0 . 72 . . . none . . PASS Atlas-SNP PHAX 51808 hgsc.bcm.edu hg19 5 125939501 125939501 + Missense_Mutation SNP G G C novel TCGA-SX-A7SU-01A-11D-A35Z-10 TCGA-SX-A7SU-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 06de0d9e-db97-4250-a774-fa0f4eabbe74 7d1da0d0-0c30-4440-b607-036215cc6509 . PHAX NM_032177 exon2 c.G336C p.K112N AGGAAAGAAGATT . 274.0 119.0 211.0 0.0 . 20 . . . none . . PASS Atlas-SNP CTNNA1 1495 hgsc.bcm.edu hg19 5 138266330 138266330 + Missense_Mutation SNP A A G novel TCGA-SX-A7SU-01A-11D-A35Z-10 TCGA-SX-A7SU-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 06de0d9e-db97-4250-a774-fa0f4eabbe74 7d1da0d0-0c30-4440-b607-036215cc6509 . CTNNA1 NM_001903 exon15 c.A2179G p.T727A GAGATGACAGACT . 170.0 76.0 97.0 0.0 . 114 . . . none . . PASS Atlas-SNP F12 2161 hgsc.bcm.edu hg19 5 176830954 176830954 + Missense_Mutation SNP A A G novel TCGA-SX-A7SU-01A-11D-A35Z-10 TCGA-SX-A7SU-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 06de0d9e-db97-4250-a774-fa0f4eabbe74 7d1da0d0-0c30-4440-b607-036215cc6509 . F12 NM_000505 exon10 c.T1156C p.Y386H CGATGTAGGGGTG . 135.0 54.0 75.0 0.0 . 35 . . . none . . PASS Atlas-SNP SYCP2L 221711 hgsc.bcm.edu hg19 6 10935326 10935326 + Silent SNP C C T novel TCGA-SX-A7SU-01A-11D-A35Z-10 TCGA-SX-A7SU-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 06de0d9e-db97-4250-a774-fa0f4eabbe74 7d1da0d0-0c30-4440-b607-036215cc6509 . SYCP2L NM_001040274 exon21 c.C1719T p.P573P AATACCCGAGCAA . 390.0 153.0 233.0 0.0 . 101 . . . none . . PASS Atlas-SNP C6orf58 352999 hgsc.bcm.edu hg19 6 127911437 127911437 + Missense_Mutation SNP C C G novel TCGA-SX-A7SU-01A-11D-A35Z-10 TCGA-SX-A7SU-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 06de0d9e-db97-4250-a774-fa0f4eabbe74 7d1da0d0-0c30-4440-b607-036215cc6509 . C6orf58 NM_001010905 exon5 c.C880G p.L294V GTTCTTCTAAATA . 36.0 13.0 34.0 0.0 . 35 . . . none . . PASS Atlas-SNP CITED2 10370 hgsc.bcm.edu hg19 6 139694378 139694378 + Missense_Mutation SNP A A G novel TCGA-SX-A7SU-01A-11D-A35Z-10 TCGA-SX-A7SU-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 06de0d9e-db97-4250-a774-fa0f4eabbe74 7d1da0d0-0c30-4440-b607-036215cc6509 . CITED2 NM_001168389 exon2 c.T719C p.M240T AAACCCATTTCTA . 108.0 50.0 87.0 0.0 . 16 . . . none . . PASS Atlas-SNP SMARCA2 6595 hgsc.bcm.edu hg19 9 2039785 2039785 + Silent SNP G G A novel TCGA-SX-A7SU-01A-11D-A35Z-10 TCGA-SX-A7SU-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 06de0d9e-db97-4250-a774-fa0f4eabbe74 7d1da0d0-0c30-4440-b607-036215cc6509 . SMARCA2 NM_139045 exon4 c.G675A p.Q225Q GCAGCAGCAGCAG . 106.0 11.0 57.0 0.0 . 313 . . . none . . PASS Atlas-SNP SMARCA2 6595 hgsc.bcm.edu hg19 9 2039809 2039809 + Silent SNP G G A novel TCGA-SX-A7SU-01A-11D-A35Z-10 TCGA-SX-A7SU-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 06de0d9e-db97-4250-a774-fa0f4eabbe74 7d1da0d0-0c30-4440-b607-036215cc6509 . SMARCA2 NM_139045 exon4 c.G699A p.Q233Q GCAGCAGCAGCAG . 110.0 15.0 72.0 0.0 . 313 . . . none . . PASS Atlas-SNP UBAP2 55833 hgsc.bcm.edu hg19 9 33944463 33944463 + Missense_Mutation SNP T T G novel TCGA-SX-A7SU-01A-11D-A35Z-10 TCGA-SX-A7SU-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 06de0d9e-db97-4250-a774-fa0f4eabbe74 7d1da0d0-0c30-4440-b607-036215cc6509 . UBAP2 NM_018449 exon14 c.A1445C p.Q482P GGAAGCTGCAAAA . 154.0 77.0 109.0 0.0 . 82 . . . none . . PASS Atlas-SNP HNRNPH3 3189 hgsc.bcm.edu hg19 10 70098346 70098346 + Missense_Mutation SNP C C A novel TCGA-SX-A7SU-01A-11D-A35Z-10 TCGA-SX-A7SU-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 06de0d9e-db97-4250-a774-fa0f4eabbe74 7d1da0d0-0c30-4440-b607-036215cc6509 . HNRNPH3 NM_012207 exon4 c.C338A p.P113Q CGGGACCATATGA . 156.0 65.0 120.0 0.0 . 33 . . . none . . PASS Atlas-SNP PANK1 53354 hgsc.bcm.edu hg19 10 91359120 91359120 + Missense_Mutation SNP T T C novel TCGA-SX-A7SU-01A-11D-A35Z-10 TCGA-SX-A7SU-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 06de0d9e-db97-4250-a774-fa0f4eabbe74 7d1da0d0-0c30-4440-b607-036215cc6509 .,3 PANK1 NM_148977 exon3 c.A1199G p.K400R TACGGCTTTTTTT . 257.0 97.0 170.0 0.0 . 35 . . . none . . PASS Atlas-SNP OR8H3 390152 hgsc.bcm.edu hg19 11 55889939 55889939 + Silent SNP C C T novel TCGA-SX-A7SU-01A-11D-A35Z-10 TCGA-SX-A7SU-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 06de0d9e-db97-4250-a774-fa0f4eabbe74 7d1da0d0-0c30-4440-b607-036215cc6509 . OR8H3 NM_001005201 exon1 c.C91T p.L31L TTTATGCTATTTC . 126.0 67.0 67.0 0.0 . 92 . . . none . . PASS Atlas-SNP TMEM109 79073 hgsc.bcm.edu hg19 11 60689497 60689497 + Missense_Mutation SNP C C G novel TCGA-SX-A7SU-01A-11D-A35Z-10 TCGA-SX-A7SU-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 06de0d9e-db97-4250-a774-fa0f4eabbe74 7d1da0d0-0c30-4440-b607-036215cc6509 . TMEM109 NM_024092 exon4 c.C592G p.L198V TACGCCCTGCTGA . 62.0 36.0 47.0 0.0 . 24 . . . none . . PASS Atlas-SNP MOGAT2 80168 hgsc.bcm.edu hg19 11 75428970 75428970 + Missense_Mutation SNP C C T novel TCGA-SX-A7SU-01A-11D-A35Z-10 TCGA-SX-A7SU-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 06de0d9e-db97-4250-a774-fa0f4eabbe74 7d1da0d0-0c30-4440-b607-036215cc6509 . MOGAT2 NM_025098 exon1 c.C37T p.R13C TGGGAGCGCAGGC . 106.0 45.0 71.0 0.0 . 49 . . . none . . PASS Atlas-SNP SLC6A13 6540 hgsc.bcm.edu hg19 12 368943 368943 + Silent SNP G G A novel TCGA-SX-A7SU-01A-11D-A35Z-10 TCGA-SX-A7SU-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 06de0d9e-db97-4250-a774-fa0f4eabbe74 7d1da0d0-0c30-4440-b607-036215cc6509 . SLC6A13 NM_001243392 exon2 c.C276T p.P92P CCAGAGGGGCCGT . 55.0 25.0 30.0 0.0 . 62 . . . none . . PASS Atlas-SNP TMEM132C 92293 hgsc.bcm.edu hg19 12 129180454 129180454 + Missense_Mutation SNP G G T novel TCGA-SX-A7SU-01A-11D-A35Z-10 TCGA-SX-A7SU-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 06de0d9e-db97-4250-a774-fa0f4eabbe74 7d1da0d0-0c30-4440-b607-036215cc6509 . TMEM132C NM_001136103 exon7 c.G1735T p.V579L GCCACCGTGCGGG . 53.0 15.0 56.0 0.0 . 142 . . . none . . PASS Atlas-SNP KATNAL1 84056 hgsc.bcm.edu hg19 13 30814596 30814596 + Splice_Site SNP C C A novel TCGA-SX-A7SU-01A-11D-A35Z-10 TCGA-SX-A7SU-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 06de0d9e-db97-4250-a774-fa0f4eabbe74 7d1da0d0-0c30-4440-b607-036215cc6509 . KATNAL1 NM_001014380 exon7 c.726+1G>T . TTCTCACCTTCCA . 81.0 27.0 53.0 0.0 . 53 . . . none . . PASS Atlas-SNP ANPEP 290 hgsc.bcm.edu hg19 15 90340880 90340880 + Missense_Mutation SNP A A G novel TCGA-SX-A7SU-01A-11D-A35Z-10 TCGA-SX-A7SU-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 06de0d9e-db97-4250-a774-fa0f4eabbe74 7d1da0d0-0c30-4440-b607-036215cc6509 . ANPEP NM_001150 exon15 c.T2083C p.W695R CCTCCCAGGGCAT . 128.0 58.0 101.0 0.0 . 124 . . . none . . PASS Atlas-SNP ANPEP 290 hgsc.bcm.edu hg19 15 90349683 90349683 + Silent SNP G G A novel TCGA-SX-A7SU-01A-11D-A35Z-10 TCGA-SX-A7SU-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 06de0d9e-db97-4250-a774-fa0f4eabbe74 7d1da0d0-0c30-4440-b607-036215cc6509 . ANPEP NM_001150 exon2 c.C132T p.S44S CACGGGGGAGCTG . 107.0 42.0 79.0 0.0 . 124 . . . none . . PASS Atlas-SNP NFAT5 10725 hgsc.bcm.edu hg19 16 69687291 69687291 + Nonsense_Mutation SNP C C G novel TCGA-SX-A7SU-01A-11D-A35Z-10 TCGA-SX-A7SU-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 06de0d9e-db97-4250-a774-fa0f4eabbe74 7d1da0d0-0c30-4440-b607-036215cc6509 . NFAT5 NM_001113178 exon5 c.C965G p.S322X GTGGCTCAGTGAA . 199.0 72.0 105.0 0.0 . 184 . . . none . . PASS Atlas-SNP SYNRG 11276 hgsc.bcm.edu hg19 17 35944776 35944776 + Missense_Mutation SNP G G A novel TCGA-SX-A7SU-01A-11D-A35Z-10 TCGA-SX-A7SU-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 06de0d9e-db97-4250-a774-fa0f4eabbe74 7d1da0d0-0c30-4440-b607-036215cc6509 . SYNRG NM_001163544 exon6 c.C569T p.A190V TGCGATGCTGGAG . 198.0 106.0 104.0 0.0 . 101 . . . none . . PASS Atlas-SNP KRTAP9-3 83900 hgsc.bcm.edu hg19 17 39388890 39388890 + Missense_Mutation SNP G G A novel TCGA-SX-A7SU-01A-11D-A35Z-10 TCGA-SX-A7SU-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 06de0d9e-db97-4250-a774-fa0f4eabbe74 7d1da0d0-0c30-4440-b607-036215cc6509 . KRTAP9-3 NM_031962 exon1 c.G137A p.C46Y AGCCTTGCTGCCA . 130.0 81.0 53.0 0.0 . 11 . . . none . . PASS Atlas-SNP ABCA7 10347 hgsc.bcm.edu hg19 19 1056069 1056069 + Missense_Mutation SNP G G A rs374185879 TCGA-SX-A7SU-01A-11D-A35Z-10 TCGA-SX-A7SU-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 06de0d9e-db97-4250-a774-fa0f4eabbe74 7d1da0d0-0c30-4440-b607-036215cc6509 . ABCA7 NM_019112 exon32 c.G4243A p.G1415R AGATACGGAGGCT . 55.0 22.0 47.0 0.0 . 174 . . . weak . . PASS Atlas-SNP PRKCSH 5589 hgsc.bcm.edu hg19 19 11558370 11558370 + Silent SNP G G A rs77563879 bycluster TCGA-SX-A7SU-01A-11D-A35Z-10 TCGA-SX-A7SU-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 06de0d9e-db97-4250-a774-fa0f4eabbe74 7d1da0d0-0c30-4440-b607-036215cc6509 PRKCSH,caecum,carcinoma,0,1 PRKCSH NM_001001329 exon11 c.G966A p.E322E GGAGGAGGAAGAA . 132.0 6.0 90.0 2.0 . 55 . . . weak . . PASS Atlas-SNP NCCRP1 342897 hgsc.bcm.edu hg19 19 39687821 39687821 + Missense_Mutation SNP G G A novel TCGA-SX-A7SU-01A-11D-A35Z-10 TCGA-SX-A7SU-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 06de0d9e-db97-4250-a774-fa0f4eabbe74 7d1da0d0-0c30-4440-b607-036215cc6509 . NCCRP1 NM_001001414 exon1 c.G199A p.A67T TCCGAGGCTCACG . 19.0 5.0 16.0 0.0 . 25 . . . none . . PASS Atlas-SNP MTMR3 8897 hgsc.bcm.edu hg19 22 30416092 30416092 + Missense_Mutation SNP A A G novel TCGA-SX-A7SU-01A-11D-A35Z-10 TCGA-SX-A7SU-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 06de0d9e-db97-4250-a774-fa0f4eabbe74 7d1da0d0-0c30-4440-b607-036215cc6509 . MTMR3 NM_153050 exon17 c.A2444G p.D815G CAGTAGATGCAAA . 167.0 37.0 129.0 0.0 . 106 . . . none . . PASS Atlas-SNP PACRG 135138 hgsc.bcm.edu hg19 6 163483263 163483263 + Frame_Shift_Del DEL T T - novel TCGA-SX-A7SU-01A-11D-A35Z-10 TCGA-SX-A7SU-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 06de0d9e-db97-4250-a774-fa0f4eabbe74 7d1da0d0-0c30-4440-b607-036215cc6509 . PACRG NM_001080379 exon3 c.372delG p.E124fs . . 173.0 69.0 89.0 0.0 . 48 . 0.398844 0 none . . PASS Atlas-Indel,Pindel KCNB1 3745 hgsc.bcm.edu hg19 20 48098450 48098450 + Splice_Site DEL C C - novel TCGA-SX-A7SU-01A-11D-A35Z-10 TCGA-SX-A7SU-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 06de0d9e-db97-4250-a774-fa0f4eabbe74 7d1da0d0-0c30-4440-b607-036215cc6509 . KCNB1 NM_004975 exon2 c.567+2G>- . . . 109.0 50.0 80.0 0.0 . 142 . 0.458716 0 none . . PASS Atlas-Indel,Pindel KATNAL2 83473 hgsc.bcm.edu hg19 18 44625645 44625646 + In_Frame_Ins INS - - AGA novel TCGA-SX-A7SU-01A-11D-A35Z-10 TCGA-SX-A7SU-10A-01D-A35Z-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 06de0d9e-db97-4250-a774-fa0f4eabbe74 7d1da0d0-0c30-4440-b607-036215cc6509 KATNAL2,colon,carcinoma,0,1 KATNAL2 NM_031303 exon13 c.1027_1028insAGA p.E343delinsEK . . 79.0 35.0 77.0 0.0 . 64 . 0.443038 0 none . . PASS Atlas-Indel,Pindel SGK223 0 hgsc.bcm.edu hg19 8 8235005 8235005 + Frame_Shift_Del DEL G G - novel TCGA-SX-A7SU-01A-11D-A35Z-10 TCGA-SX-A7SU-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 06de0d9e-db97-4250-a774-fa0f4eabbe74 7d1da0d0-0c30-4440-b607-036215cc6509 . . NM_001080826 exon2 c.915delG p.P305fs . . 174.0 65.0 111.0 0.0 . . . 0.373563 0 none . . PASS Atlas-Indel,Pindel PEPD 5184 hgsc.bcm.edu hg19 19 33902620 33902621 + In_Frame_Ins INS - - CGTGTC novel TCGA-SX-A7SU-01A-11D-A35Z-10 TCGA-SX-A7SU-10A-01D-A35Z-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 06de0d9e-db97-4250-a774-fa0f4eabbe74 7d1da0d0-0c30-4440-b607-036215cc6509 . PEPD NM_000285 exon11 c.776_777insGACACG p.A259delinsGHA . . 41.0 13.0 48.0 0.0 . 48 . 0.317 . none . . PASS Pindel ALS2 57679 hgsc.bcm.edu hg19 2 202622485 202622485 + Splice_Site DEL A A - novel TCGA-SX-A7SU-01A-11D-A35Z-10 TCGA-SX-A7SU-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 06de0d9e-db97-4250-a774-fa0f4eabbe74 7d1da0d0-0c30-4440-b607-036215cc6509 . ALS2 NM_020919 exon6 c.1114-2T>- . . . 38.0 10.0 18.0 0.0 . 172 . 0.263 . none . . PASS Pindel