Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
TMEM51	55092	hgsc.bcm.edu	hg19	1	15545967	15545967	+	Silent	SNP	C	C	T	novel		TCGA-SX-A7SQ-01A-12D-A35Z-10	TCGA-SX-A7SQ-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2aa8e8d1-bc6d-4efa-82ef-120034ca6bcc	8ccf0feb-ec04-4877-b269-2a824a396344	.	TMEM51	NM_018022	exon3	c.C490T	p.L164L	GAGTCACTGACGG	.	286.0	116.0	319.0	0.0	.	28	.	.	.	none	.	.	PASS	Atlas-SNP
PRPF38B	55119	hgsc.bcm.edu	hg19	1	109235289	109235289	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-SX-A7SQ-01A-12D-A35Z-10	TCGA-SX-A7SQ-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2aa8e8d1-bc6d-4efa-82ef-120034ca6bcc	8ccf0feb-ec04-4877-b269-2a824a396344	.	PRPF38B	NM_018061	exon1	c.C76A	p.Q26K	CAGCAACAGCAGC	.	102.0	47.0	98.0	0.0	.	55	.	.	.	none	.	.	PASS	Atlas-SNP
TOMM40L	84134	hgsc.bcm.edu	hg19	1	161197092	161197092	+	Silent	SNP	T	T	C	novel		TCGA-SX-A7SQ-01A-12D-A35Z-10	TCGA-SX-A7SQ-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2aa8e8d1-bc6d-4efa-82ef-120034ca6bcc	8ccf0feb-ec04-4877-b269-2a824a396344	.	TOMM40L	NM_032174	exon4	c.T228C	p.Y76Y	GGGATATCACCTC	.	160.0	79.0	152.0	0.0	.	19	.	.	.	none	.	.	PASS	Atlas-SNP
FCRLB	127943	hgsc.bcm.edu	hg19	1	161695843	161695843	+	Silent	SNP	C	C	A	novel		TCGA-SX-A7SQ-01A-12D-A35Z-10	TCGA-SX-A7SQ-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2aa8e8d1-bc6d-4efa-82ef-120034ca6bcc	8ccf0feb-ec04-4877-b269-2a824a396344	.	FCRLB	NM_001002901	exon4	c.C540A	p.P180P	CGCGCCCATGTTC	.	145.0	70.0	136.0	0.0	.	35	.	.	.	none	.	.	PASS	Atlas-SNP
LHX4	89884	hgsc.bcm.edu	hg19	1	180243426	180243426	+	Silent	SNP	A	A	G	novel		TCGA-SX-A7SQ-01A-12D-A35Z-10	TCGA-SX-A7SQ-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2aa8e8d1-bc6d-4efa-82ef-120034ca6bcc	8ccf0feb-ec04-4877-b269-2a824a396344	.	LHX4	NM_033343	exon6	c.A885G	p.T295T	CGGGACAGGACAA	.	615.0	35.0	643.0	0.0	.	36	.	.	.	none	.	.	PASS	Atlas-SNP
ABCB10	23456	hgsc.bcm.edu	hg19	1	229685017	229685017	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-SX-A7SQ-01A-12D-A35Z-10	TCGA-SX-A7SQ-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2aa8e8d1-bc6d-4efa-82ef-120034ca6bcc	8ccf0feb-ec04-4877-b269-2a824a396344	.	ABCB10	NM_012089	exon2	c.G682A	p.A228T	CATTGGCGGCAGC	.	143.0	58.0	183.0	0.0	.	71	.	.	.	none	.	.	PASS	Atlas-SNP
RGS7	6000	hgsc.bcm.edu	hg19	1	240978050	240978050	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-SX-A7SQ-01A-12D-A35Z-10	TCGA-SX-A7SQ-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2aa8e8d1-bc6d-4efa-82ef-120034ca6bcc	8ccf0feb-ec04-4877-b269-2a824a396344	.	RGS7	NM_002924	exon12	c.A811G	p.R271G	GATGTCTATCTAA	.	47.0	19.0	68.0	0.0	.	308	.	.	.	none	.	.	PASS	Atlas-SNP
OR2C3	81472	hgsc.bcm.edu	hg19	1	247695079	247695079	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SX-A7SQ-01A-12D-A35Z-10	TCGA-SX-A7SQ-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2aa8e8d1-bc6d-4efa-82ef-120034ca6bcc	8ccf0feb-ec04-4877-b269-2a824a396344	.	OR2C3	NM_198074	exon2	c.C735A	p.H245Q	AGCCACGTGGGAA	.	192.0	97.0	194.0	0.0	.	92	.	.	.	none	.	.	PASS	Atlas-SNP
TMEM178A	130733	hgsc.bcm.edu	hg19	2	39934204	39934204	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-SX-A7SQ-01A-12D-A35Z-10	TCGA-SX-A7SQ-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2aa8e8d1-bc6d-4efa-82ef-120034ca6bcc	8ccf0feb-ec04-4877-b269-2a824a396344	.	.	NM_152390	exon3	c.C530T	p.T177I	GAATCACTGCTGG	.	81.0	34.0	108.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
MSH2	4436	hgsc.bcm.edu	hg19	2	47641475	47641475	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-SX-A7SQ-01A-12D-A35Z-10	TCGA-SX-A7SQ-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2aa8e8d1-bc6d-4efa-82ef-120034ca6bcc	8ccf0feb-ec04-4877-b269-2a824a396344	.	MSH2	NM_000251	exon5	c.G860C	p.G287A	ACTTTGGACAGTT	.	196.0	69.0	216.0	0.0	.	198	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF638	27332	hgsc.bcm.edu	hg19	2	71661907	71661907	+	Silent	SNP	G	G	A	novel		TCGA-SX-A7SQ-01A-12D-A35Z-10	TCGA-SX-A7SQ-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2aa8e8d1-bc6d-4efa-82ef-120034ca6bcc	8ccf0feb-ec04-4877-b269-2a824a396344	.	ZNF638	NM_014497	exon28	c.G5907A	p.Q1969Q	GGAGCAGAATGAG	.	436.0	192.0	507.0	0.0	.	179	.	.	.	none	.	.	PASS	Atlas-SNP
IWS1	55677	hgsc.bcm.edu	hg19	2	128262338	128262338	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-SX-A7SQ-01A-12D-A35Z-10	TCGA-SX-A7SQ-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2aa8e8d1-bc6d-4efa-82ef-120034ca6bcc	8ccf0feb-ec04-4877-b269-2a824a396344	.	IWS1	NM_017969	exon3	c.G1141T	p.E381X	CTTTTTCATCTTC	.	92.0	8.0	116.0	0.0	.	61	.	.	.	none	.	.	PASS	Atlas-SNP
MZT2A	653784	hgsc.bcm.edu	hg19	2	132249824	132249824	+	Silent	SNP	C	C	T	novel		TCGA-SX-A7SQ-01A-12D-A35Z-10	TCGA-SX-A7SQ-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2aa8e8d1-bc6d-4efa-82ef-120034ca6bcc	8ccf0feb-ec04-4877-b269-2a824a396344	.	MZT2A	NM_001085365	exon1	c.G126A	p.E42E	AGCCAGCTCGTAC	.	43.0	11.0	47.0	0.0	.	6	.	.	.	none	.	.	PASS	Atlas-SNP
FZD5	7855	hgsc.bcm.edu	hg19	2	208633223	208633223	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-SX-A7SQ-01A-12D-A35Z-10	TCGA-SX-A7SQ-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2aa8e8d1-bc6d-4efa-82ef-120034ca6bcc	8ccf0feb-ec04-4877-b269-2a824a396344	.	FZD5	NM_003468	exon2	c.G241A	p.D81N	GCAGGTCCGGCGA	.	74.0	35.0	54.0	0.0	.	22	.	.	.	none	.	.	PASS	Atlas-SNP
CLASP2	23122	hgsc.bcm.edu	hg19	3	33557518	33557518	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-SX-A7SQ-01A-12D-A35Z-10	TCGA-SX-A7SQ-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2aa8e8d1-bc6d-4efa-82ef-120034ca6bcc	8ccf0feb-ec04-4877-b269-2a824a396344	.	CLASP2	NM_015097	exon36	c.G4134T	p.K1378N	TACCTCCTTATGA	.	115.0	50.0	76.0	0.0	.	138	.	.	.	none	.	.	PASS	Atlas-SNP
GLYCTK	132158	hgsc.bcm.edu	hg19	3	52325107	52325107	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-SX-A7SQ-01A-12D-A35Z-10	TCGA-SX-A7SQ-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2aa8e8d1-bc6d-4efa-82ef-120034ca6bcc	8ccf0feb-ec04-4877-b269-2a824a396344	.	GLYCTK	NM_001144951	exon3	c.T509C	p.L170P	ATGACCTGCTGCT	.	37.0	10.0	25.0	0.0	.	30	.	.	.	none	.	.	PASS	Atlas-SNP
ZIC1	7545	hgsc.bcm.edu	hg19	3	147128271	147128271	+	Silent	SNP	G	G	T	novel		TCGA-SX-A7SQ-01A-12D-A35Z-10	TCGA-SX-A7SQ-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2aa8e8d1-bc6d-4efa-82ef-120034ca6bcc	8ccf0feb-ec04-4877-b269-2a824a396344	ZIC1,NS,carcinoma,0,1	ZIC1	NM_003412	exon1	c.G372T	p.S124S	TGCATCGGCCGGG	.	148.0	92.0	112.0	0.0	.	141	.	.	.	none	.	.	PASS	Atlas-SNP
ZIC1	7545	hgsc.bcm.edu	hg19	3	147128272	147128272	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SX-A7SQ-01A-12D-A35Z-10	TCGA-SX-A7SQ-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2aa8e8d1-bc6d-4efa-82ef-120034ca6bcc	8ccf0feb-ec04-4877-b269-2a824a396344	.	ZIC1	NM_003412	exon1	c.G373T	p.A125S	GCATCGGCCGGGG	.	151.0	95.0	112.0	0.0	.	141	.	.	.	none	.	.	PASS	Atlas-SNP
ECT2	1894	hgsc.bcm.edu	hg19	3	172533501	172533501	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-SX-A7SQ-01A-12D-A35Z-10	TCGA-SX-A7SQ-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2aa8e8d1-bc6d-4efa-82ef-120034ca6bcc	8ccf0feb-ec04-4877-b269-2a824a396344	.	ECT2	NM_001258315	exon23	c.G2508C	p.K836N	AAAAAAGGTGAGT	.	467.0	269.0	460.0	0.0	.	79	.	.	.	none	.	.	PASS	Atlas-SNP
SHISA3	152573	hgsc.bcm.edu	hg19	4	42400234	42400234	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-SX-A7SQ-01A-12D-A35Z-10	TCGA-SX-A7SQ-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2aa8e8d1-bc6d-4efa-82ef-120034ca6bcc	8ccf0feb-ec04-4877-b269-2a824a396344	.	SHISA3	NM_001080505	exon1	c.C161A	p.T54N	ACGCTACCATCTG	.	160.0	8.0	120.0	0.0	.	27	.	.	.	none	.	.	PASS	Atlas-SNP
DDX60	55601	hgsc.bcm.edu	hg19	4	169204723	169204723	+	Silent	SNP	C	C	A	novel		TCGA-SX-A7SQ-01A-12D-A35Z-10	TCGA-SX-A7SQ-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2aa8e8d1-bc6d-4efa-82ef-120034ca6bcc	8ccf0feb-ec04-4877-b269-2a824a396344	.	DDX60	NM_017631	exon13	c.G1596T	p.V532V	CTTTTGCACAGAT	.	106.0	34.0	120.0	0.0	.	304	.	.	.	none	.	.	PASS	Atlas-SNP
DDX60	55601	hgsc.bcm.edu	hg19	4	169204739	169204739	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-SX-A7SQ-01A-12D-A35Z-10	TCGA-SX-A7SQ-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2aa8e8d1-bc6d-4efa-82ef-120034ca6bcc	8ccf0feb-ec04-4877-b269-2a824a396344	.	DDX60	NM_017631	exon13	c.G1580A	p.R527H	AGAACACGAGGGT	.	87.0	28.0	108.0	0.0	.	304	.	.	.	none	.	.	PASS	Atlas-SNP
GPX8	493869	hgsc.bcm.edu	hg19	5	54456223	54456223	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-SX-A7SQ-01A-12D-A35Z-10	TCGA-SX-A7SQ-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2aa8e8d1-bc6d-4efa-82ef-120034ca6bcc	8ccf0feb-ec04-4877-b269-2a824a396344	.	GPX8	NM_001008397	exon1	c.A203G	p.K68R	AAGGCAAAGTAAG	.	158.0	93.0	142.0	0.0	.	20	.	.	.	none	.	.	PASS	Atlas-SNP
THBS4	7060	hgsc.bcm.edu	hg19	5	79374755	79374755	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-SX-A7SQ-01A-12D-A35Z-10	TCGA-SX-A7SQ-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2aa8e8d1-bc6d-4efa-82ef-120034ca6bcc	8ccf0feb-ec04-4877-b269-2a824a396344	.	THBS4	NM_003248	exon18	c.T2277G	p.I759M	GGAGATTGTACAG	.	83.0	21.0	95.0	0.0	.	82	.	.	.	none	.	.	PASS	Atlas-SNP
PCDHGB2	56103	hgsc.bcm.edu	hg19	5	140742098	140742098	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-SX-A7SQ-01A-12D-A35Z-10	TCGA-SX-A7SQ-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2aa8e8d1-bc6d-4efa-82ef-120034ca6bcc	8ccf0feb-ec04-4877-b269-2a824a396344	.	PCDHGB2	NM_018923	exon1	c.C2396A	p.P799H	GGGTCCCTTTTGC	.	143.0	41.0	126.0	0.0	.	196	.	.	.	none	.	.	PASS	Atlas-SNP
EXOC2	55770	hgsc.bcm.edu	hg19	6	532588	532588	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-SX-A7SQ-01A-12D-A35Z-10	TCGA-SX-A7SQ-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2aa8e8d1-bc6d-4efa-82ef-120034ca6bcc	8ccf0feb-ec04-4877-b269-2a824a396344	.	EXOC2	NM_018303	exon23	c.A2261C	p.E754A	TCTAGTTCTTTCA	.	102.0	51.0	126.0	0.0	.	81	.	.	.	none	.	.	PASS	Atlas-SNP
DSP	1832	hgsc.bcm.edu	hg19	6	7578720	7578720	+	Silent	SNP	C	C	T	novel		TCGA-SX-A7SQ-01A-12D-A35Z-10	TCGA-SX-A7SQ-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2aa8e8d1-bc6d-4efa-82ef-120034ca6bcc	8ccf0feb-ec04-4877-b269-2a824a396344	.	DSP	NM_004415	exon22	c.C3009T	p.Y1003Y	TCGGTACATTGAA	.	98.0	45.0	129.0	0.0	.	306	.	.	.	none	.	.	PASS	Atlas-SNP
PGC	5225	hgsc.bcm.edu	hg19	6	41712422	41712422	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-SX-A7SQ-01A-12D-A35Z-10	TCGA-SX-A7SQ-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2aa8e8d1-bc6d-4efa-82ef-120034ca6bcc	8ccf0feb-ec04-4877-b269-2a824a396344	.	PGC	NM_002630	exon2	c.A184T	p.T62S	CGTAGGTCACGCT	.	97.0	54.0	103.0	0.0	.	56	.	.	.	none	.	.	PASS	Atlas-SNP
PGC	5225	hgsc.bcm.edu	hg19	6	41712423	41712423	+	Silent	SNP	C	C	G	novel		TCGA-SX-A7SQ-01A-12D-A35Z-10	TCGA-SX-A7SQ-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2aa8e8d1-bc6d-4efa-82ef-120034ca6bcc	8ccf0feb-ec04-4877-b269-2a824a396344	.	PGC	NM_002630	exon2	c.G183C	p.V61V	GTAGGTCACGCTG	.	98.0	54.0	104.0	0.0	.	56	.	.	.	none	.	.	PASS	Atlas-SNP
EFHC1	114327	hgsc.bcm.edu	hg19	6	52357086	52357086	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-SX-A7SQ-01A-12D-A35Z-10	TCGA-SX-A7SQ-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2aa8e8d1-bc6d-4efa-82ef-120034ca6bcc	8ccf0feb-ec04-4877-b269-2a824a396344	.	EFHC1	NM_018100	exon11	c.C1870G	p.H624D	TGCTCTCATGGAG	.	87.0	38.0	98.0	0.0	.	68	.	.	.	none	.	.	PASS	Atlas-SNP
TINAG	27283	hgsc.bcm.edu	hg19	6	54216153	54216153	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-SX-A7SQ-01A-12D-A35Z-10	TCGA-SX-A7SQ-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2aa8e8d1-bc6d-4efa-82ef-120034ca6bcc	8ccf0feb-ec04-4877-b269-2a824a396344	.	TINAG	NM_014464	exon8	c.A1084T	p.T362S	CAGGAAACTGAGA	.	75.0	37.0	111.0	0.0	.	102	.	.	.	none	.	.	PASS	Atlas-SNP
USP42	84132	hgsc.bcm.edu	hg19	7	6196544	6196544	+	Silent	SNP	C	C	T	novel		TCGA-SX-A7SQ-01A-12D-A35Z-10	TCGA-SX-A7SQ-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2aa8e8d1-bc6d-4efa-82ef-120034ca6bcc	8ccf0feb-ec04-4877-b269-2a824a396344	.	USP42	NM_032172	exon16	c.C3801T	p.V1267V	GACTGTCGCCCAG	.	158.0	42.0	100.0	0.0	.	138	.	.	.	none	.	.	PASS	Atlas-SNP
THSD7A	221981	hgsc.bcm.edu	hg19	7	11446609	11446609	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-SX-A7SQ-01A-12D-A35Z-10	TCGA-SX-A7SQ-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2aa8e8d1-bc6d-4efa-82ef-120034ca6bcc	8ccf0feb-ec04-4877-b269-2a824a396344	.	THSD7A	NM_015204	exon20	c.C3990G	p.D1330E	GGACTGGTCCATC	.	185.0	43.0	151.0	0.0	.	219	.	.	.	none	.	.	PASS	Atlas-SNP
NFE2L3	9603	hgsc.bcm.edu	hg19	7	26224563	26224563	+	Silent	SNP	A	A	T	novel		TCGA-SX-A7SQ-01A-12D-A35Z-10	TCGA-SX-A7SQ-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2aa8e8d1-bc6d-4efa-82ef-120034ca6bcc	8ccf0feb-ec04-4877-b269-2a824a396344	.	NFE2L3	NM_004289	exon4	c.A1245T	p.P415P	TGAACCAGATTCT	.	102.0	28.0	71.0	0.0	.	77	.	.	.	none	.	.	PASS	Atlas-SNP
CCDC146	57639	hgsc.bcm.edu	hg19	7	76922400	76922400	+	Silent	SNP	C	C	T	novel		TCGA-SX-A7SQ-01A-12D-A35Z-10	TCGA-SX-A7SQ-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2aa8e8d1-bc6d-4efa-82ef-120034ca6bcc	8ccf0feb-ec04-4877-b269-2a824a396344	.	CCDC146	NM_020879	exon18	c.C2547T	p.F849F	CATCTTCACTTGC	.	131.0	41.0	98.0	0.0	.	87	.	.	.	none	.	.	PASS	Atlas-SNP
MET	4233	hgsc.bcm.edu	hg19	7	116417463	116417463	+	Missense_Mutation	SNP	C	C	T	rs121913244		TCGA-SX-A7SQ-01A-12D-A35Z-10	TCGA-SX-A7SQ-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2aa8e8d1-bc6d-4efa-82ef-120034ca6bcc	8ccf0feb-ec04-4877-b269-2a824a396344	MET,colon,carcinoma,0,2	MET	NM_001127500	exon16	c.C3334T	p.H1112Y	GTATATCATGGGA	.	109.0	64.0	97.0	0.0	.	412	.	.	.	weak	.	.	PASS	Atlas-SNP
TTC39B	158219	hgsc.bcm.edu	hg19	9	15225959	15225959	+	Silent	SNP	A	A	G	novel		TCGA-SX-A7SQ-01A-12D-A35Z-10	TCGA-SX-A7SQ-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2aa8e8d1-bc6d-4efa-82ef-120034ca6bcc	8ccf0feb-ec04-4877-b269-2a824a396344	.	TTC39B	NM_001168340	exon3	c.T327C	p.D109D	TTGTGTATCACAT	.	60.0	25.0	64.0	0.0	.	83	.	.	.	none	.	.	PASS	Atlas-SNP
SLC31A1	1317	hgsc.bcm.edu	hg19	9	116021053	116021053	+	Silent	SNP	G	G	A	novel		TCGA-SX-A7SQ-01A-12D-A35Z-10	TCGA-SX-A7SQ-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2aa8e8d1-bc6d-4efa-82ef-120034ca6bcc	8ccf0feb-ec04-4877-b269-2a824a396344	.	SLC31A1	NM_001859	exon4	c.G282A	p.L94L	CCTGCTGCGTAAG	.	89.0	34.0	87.0	0.0	.	12	.	.	.	none	.	.	PASS	Atlas-SNP
SDCCAG3	10807	hgsc.bcm.edu	hg19	9	139304610	139304610	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-SX-A7SQ-01A-12D-A35Z-10	TCGA-SX-A7SQ-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2aa8e8d1-bc6d-4efa-82ef-120034ca6bcc	8ccf0feb-ec04-4877-b269-2a824a396344	.	SDCCAG3	NM_001039707	exon2	c.T152A	p.F51Y	CCGAAGAAGGGGG	.	117.0	57.0	161.0	0.0	.	41	.	.	.	none	.	.	PASS	Atlas-SNP
ABCA2	20	hgsc.bcm.edu	hg19	9	139905075	139905075	+	Silent	SNP	G	G	A	novel		TCGA-SX-A7SQ-01A-12D-A35Z-10	TCGA-SX-A7SQ-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2aa8e8d1-bc6d-4efa-82ef-120034ca6bcc	8ccf0feb-ec04-4877-b269-2a824a396344	.	ABCA2	NM_212533	exon40	c.C6261T	p.T2087T	CACCTTGGTCAGG	.	193.0	85.0	211.0	0.0	.	113	.	.	.	none	.	.	PASS	Atlas-SNP
SKIDA1	387640	hgsc.bcm.edu	hg19	10	21805486	21805486	+	Silent	SNP	C	C	T	novel		TCGA-SX-A7SQ-01A-12D-A35Z-10	TCGA-SX-A7SQ-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2aa8e8d1-bc6d-4efa-82ef-120034ca6bcc	8ccf0feb-ec04-4877-b269-2a824a396344	C10orf140_ENST00000449193,rectum,carcinoma,0,4	.	NM_207371	exon4	c.G1266A	p.E422E	TTCCTCCTCCTCC	.	79.0	6.0	50.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
SUFU	51684	hgsc.bcm.edu	hg19	10	104356961	104356961	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-SX-A7SQ-01A-12D-A35Z-10	TCGA-SX-A7SQ-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2aa8e8d1-bc6d-4efa-82ef-120034ca6bcc	8ccf0feb-ec04-4877-b269-2a824a396344	.	SUFU	NM_001178133	exon7	c.C821A	p.A274D	AGTGTGCCTGGGA	.	95.0	42.0	75.0	0.0	.	44	.	.	.	none	.	.	PASS	Atlas-SNP
TDRD1	56165	hgsc.bcm.edu	hg19	10	115947804	115947804	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-SX-A7SQ-01A-12D-A35Z-10	TCGA-SX-A7SQ-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2aa8e8d1-bc6d-4efa-82ef-120034ca6bcc	8ccf0feb-ec04-4877-b269-2a824a396344	.	TDRD1	NM_198795	exon2	c.C214T	p.Q72X	TGTGAGCAAACCA	.	204.0	94.0	238.0	0.0	.	126	.	.	.	none	.	.	PASS	Atlas-SNP
FAM160A2	84067	hgsc.bcm.edu	hg19	11	6245688	6245688	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SX-A7SQ-01A-12D-A35Z-10	TCGA-SX-A7SQ-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2aa8e8d1-bc6d-4efa-82ef-120034ca6bcc	8ccf0feb-ec04-4877-b269-2a824a396344	.	FAM160A2	NM_032127	exon2	c.C59A	p.P20H	CCTTGAGGTATAC	.	123.0	45.0	125.0	0.0	.	100	.	.	.	none	.	.	PASS	Atlas-SNP
PRKCDBP	112464	hgsc.bcm.edu	hg19	11	6341515	6341515	+	Silent	SNP	C	C	T	novel		TCGA-SX-A7SQ-01A-12D-A35Z-10	TCGA-SX-A7SQ-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2aa8e8d1-bc6d-4efa-82ef-120034ca6bcc	8ccf0feb-ec04-4877-b269-2a824a396344	.	PRKCDBP	NM_145040	exon1	c.G192A	p.L64L	AGCGCCCAGGCCG	.	40.0	17.0	50.0	0.0	.	19	.	.	.	none	.	.	PASS	Atlas-SNP
OR10A5	144124	hgsc.bcm.edu	hg19	11	6867588	6867588	+	Silent	SNP	T	T	C	novel		TCGA-SX-A7SQ-01A-12D-A35Z-10	TCGA-SX-A7SQ-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2aa8e8d1-bc6d-4efa-82ef-120034ca6bcc	8ccf0feb-ec04-4877-b269-2a824a396344	.	OR10A5	NM_178168	exon1	c.T675C	p.A225A	TGCTGCTATCCTC	.	118.0	6.0	123.0	0.0	.	48	.	.	.	none	.	.	PASS	Atlas-SNP
ARAP1	116985	hgsc.bcm.edu	hg19	11	72423565	72423565	+	Silent	SNP	G	G	A	novel		TCGA-SX-A7SQ-01A-12D-A35Z-10	TCGA-SX-A7SQ-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2aa8e8d1-bc6d-4efa-82ef-120034ca6bcc	8ccf0feb-ec04-4877-b269-2a824a396344	.	ARAP1	NM_001040118	exon6	c.C796T	p.L266L	TCAGCAGACTGGC	.	69.0	32.0	65.0	0.0	.	168	.	.	.	none	.	.	PASS	Atlas-SNP
DLG2	1740	hgsc.bcm.edu	hg19	11	83770507	83770507	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-SX-A7SQ-01A-12D-A35Z-10	TCGA-SX-A7SQ-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2aa8e8d1-bc6d-4efa-82ef-120034ca6bcc	8ccf0feb-ec04-4877-b269-2a824a396344	.	DLG2	NM_001142699	exon11	c.G770C	p.R257P	TTCACCCGCAAGA	.	129.0	55.0	137.0	0.0	.	448	.	.	.	none	.	.	PASS	Atlas-SNP
KBTBD3	143879	hgsc.bcm.edu	hg19	11	105923709	105923709	+	Silent	SNP	C	C	A	novel		TCGA-SX-A7SQ-01A-12D-A35Z-10	TCGA-SX-A7SQ-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2aa8e8d1-bc6d-4efa-82ef-120034ca6bcc	8ccf0feb-ec04-4877-b269-2a824a396344	.	KBTBD3	NM_152433	exon3	c.G1707T	p.V569V	GACCTGCACTTCA	.	131.0	54.0	141.0	0.0	.	59	.	.	.	none	.	.	PASS	Atlas-SNP
TECTA	7007	hgsc.bcm.edu	hg19	11	120976623	120976623	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-SX-A7SQ-01A-12D-A35Z-10	TCGA-SX-A7SQ-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2aa8e8d1-bc6d-4efa-82ef-120034ca6bcc	8ccf0feb-ec04-4877-b269-2a824a396344	.	TECTA	NM_005422	exon2	c.A148G	p.K50E	GAGATTAAGTTGG	.	45.0	16.0	76.0	0.0	.	329	.	.	.	none	.	.	PASS	Atlas-SNP
AGAP2	116986	hgsc.bcm.edu	hg19	12	58131312	58131312	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-SX-A7SQ-01A-12D-A35Z-10	TCGA-SX-A7SQ-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2aa8e8d1-bc6d-4efa-82ef-120034ca6bcc	8ccf0feb-ec04-4877-b269-2a824a396344	AGAP2_ENST00000547588,NS,carcinoma,0,1	AGAP2	NM_001122772	exon1	c.G718A	p.A240T	CGGCGGCGGTGGC	.	126.0	7.0	94.0	0.0	.	167	.	.	.	none	.	.	PASS	Atlas-SNP
PHLDA1	22822	hgsc.bcm.edu	hg19	12	76424940	76424940	+	Silent	SNP	C	C	T	rs80344196		TCGA-SX-A7SQ-01A-12D-A35Z-10	TCGA-SX-A7SQ-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2aa8e8d1-bc6d-4efa-82ef-120034ca6bcc	8ccf0feb-ec04-4877-b269-2a824a396344	.	PHLDA1	NM_007350	exon1	c.G582A	p.Q194Q	CTGTTGCTGCTGC	.	28.0	16.0	5.0	0.0	.	39	.	.	.	weak	.	.	PASS	Atlas-SNP
CLLU1OS	574016	hgsc.bcm.edu	hg19	12	92814817	92814817	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-SX-A7SQ-01A-12D-A35Z-10	TCGA-SX-A7SQ-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2aa8e8d1-bc6d-4efa-82ef-120034ca6bcc	8ccf0feb-ec04-4877-b269-2a824a396344	.	CLLU1OS	NM_001025232	exon3	c.A275G	p.D92G	TTCCCATCATCAT	.	106.0	67.0	79.0	0.0	.	14	.	.	.	none	.	.	PASS	Atlas-SNP
STAB2	55576	hgsc.bcm.edu	hg19	12	104160113	104160113	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SX-A7SQ-01A-12D-A35Z-10	TCGA-SX-A7SQ-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2aa8e8d1-bc6d-4efa-82ef-120034ca6bcc	8ccf0feb-ec04-4877-b269-2a824a396344	.	STAB2	NM_017564	exon69	c.G7655T	p.X2552L	CACTGTGAGGGCC	.	179.0	110.0	127.0	0.0	.	370	.	.	.	none	.	.	PASS	Atlas-SNP
FREM2	341640	hgsc.bcm.edu	hg19	13	39450509	39450509	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SX-A7SQ-01A-12D-A35Z-10	TCGA-SX-A7SQ-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2aa8e8d1-bc6d-4efa-82ef-120034ca6bcc	8ccf0feb-ec04-4877-b269-2a824a396344	.	FREM2	NM_207361	exon20	c.G8534T	p.R2845L	ACATCCGATTCCA	.	84.0	56.0	72.0	0.0	.	385	.	.	.	none	.	.	PASS	Atlas-SNP
ARHGEF7	8874	hgsc.bcm.edu	hg19	13	111926181	111926181	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-SX-A7SQ-01A-12D-A35Z-10	TCGA-SX-A7SQ-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2aa8e8d1-bc6d-4efa-82ef-120034ca6bcc	8ccf0feb-ec04-4877-b269-2a824a396344	.	ARHGEF7	NM_001113511	exon11	c.T1157G	p.M386R	AGTTCATGGAGAC	.	128.0	61.0	94.0	0.0	.	157	.	.	.	none	.	.	PASS	Atlas-SNP
TGM1	7051	hgsc.bcm.edu	hg19	14	24718615	24718615	+	Silent	SNP	C	C	G	novel		TCGA-SX-A7SQ-01A-12D-A35Z-10	TCGA-SX-A7SQ-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2aa8e8d1-bc6d-4efa-82ef-120034ca6bcc	8ccf0feb-ec04-4877-b269-2a824a396344	.	TGM1	NM_000359	exon15	c.G2358C	p.V786V	TGGGGCCACATCC	.	60.0	19.0	55.0	0.0	.	73	.	.	.	none	.	.	PASS	Atlas-SNP
ZBTB42	100128927	hgsc.bcm.edu	hg19	14	105268770	105268770	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-SX-A7SQ-01A-12D-A35Z-10	TCGA-SX-A7SQ-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2aa8e8d1-bc6d-4efa-82ef-120034ca6bcc	8ccf0feb-ec04-4877-b269-2a824a396344	.	ZBTB42	NM_001137601	exon2	c.T1236G	p.F412L	CAAGTTTCACTGT	.	61.0	23.0	64.0	0.0	.	10	.	.	.	none	.	.	PASS	Atlas-SNP
ANPEP	290	hgsc.bcm.edu	hg19	15	90349503	90349503	+	Silent	SNP	C	C	T	novel		TCGA-SX-A7SQ-01A-12D-A35Z-10	TCGA-SX-A7SQ-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2aa8e8d1-bc6d-4efa-82ef-120034ca6bcc	8ccf0feb-ec04-4877-b269-2a824a396344	.	ANPEP	NM_001150	exon2	c.G312A	p.K104K	GGAGCCCTTAAAA	.	87.0	46.0	91.0	0.0	.	124	.	.	.	none	.	.	PASS	Atlas-SNP
MAN2A2	4122	hgsc.bcm.edu	hg19	15	91453418	91453418	+	Silent	SNP	G	G	A	novel		TCGA-SX-A7SQ-01A-12D-A35Z-10	TCGA-SX-A7SQ-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2aa8e8d1-bc6d-4efa-82ef-120034ca6bcc	8ccf0feb-ec04-4877-b269-2a824a396344	.	MAN2A2	NM_006122	exon9	c.G1473A	p.G491G	GAGCGGGGATTTC	.	91.0	31.0	85.0	0.0	.	99	.	.	.	none	.	.	PASS	Atlas-SNP
SOLH	6650	hgsc.bcm.edu	hg19	16	603351	603351	+	Silent	SNP	G	G	A	novel		TCGA-SX-A7SQ-01A-12D-A35Z-10	TCGA-SX-A7SQ-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2aa8e8d1-bc6d-4efa-82ef-120034ca6bcc	8ccf0feb-ec04-4877-b269-2a824a396344	.	SOLH	NM_005632	exon14	c.G3096A	p.V1032V	CCTGGTGATCTTG	.	262.0	61.0	228.0	0.0	.	47	.	.	.	none	.	.	PASS	Atlas-SNP
SOLH	6650	hgsc.bcm.edu	hg19	16	603352	603352	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-SX-A7SQ-01A-12D-A35Z-10	TCGA-SX-A7SQ-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2aa8e8d1-bc6d-4efa-82ef-120034ca6bcc	8ccf0feb-ec04-4877-b269-2a824a396344	.	SOLH	NM_005632	exon14	c.A3097T	p.I1033F	CTGGTGATCTTGT	.	268.0	64.0	226.0	0.0	.	47	.	.	.	none	.	.	PASS	Atlas-SNP
UNKL	64718	hgsc.bcm.edu	hg19	16	1464001	1464001	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-SX-A7SQ-01A-12D-A35Z-10	TCGA-SX-A7SQ-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2aa8e8d1-bc6d-4efa-82ef-120034ca6bcc	8ccf0feb-ec04-4877-b269-2a824a396344	.	UNKL	NM_001193388	exon2	c.G133C	p.A45P	GCTGCGCGCACTT	.	327.0	102.0	187.0	0.0	.	46	.	.	.	none	.	.	PASS	Atlas-SNP
SCNN1B	6338	hgsc.bcm.edu	hg19	16	23387172	23387172	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-SX-A7SQ-01A-12D-A35Z-10	TCGA-SX-A7SQ-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2aa8e8d1-bc6d-4efa-82ef-120034ca6bcc	8ccf0feb-ec04-4877-b269-2a824a396344	SCNN1B,right_lower_lobe,carcinoma,0,1	SCNN1B	NM_000336	exon8	c.C1266A	p.D422E	CCCAGACTGGGGT	.	144.0	59.0	105.0	1.0	.	81	.	.	.	none	.	.	PASS	Atlas-SNP
NUP93	9688	hgsc.bcm.edu	hg19	16	56864565	56864565	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SX-A7SQ-01A-12D-A35Z-10	TCGA-SX-A7SQ-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2aa8e8d1-bc6d-4efa-82ef-120034ca6bcc	8ccf0feb-ec04-4877-b269-2a824a396344	.	NUP93	NM_014669	exon10	c.G1053T	p.W351C	AACCTGGTTCCAG	.	80.0	25.0	72.0	0.0	.	75	.	.	.	none	.	.	PASS	Atlas-SNP
C17orf100	388327	hgsc.bcm.edu	hg19	17	6555545	6555545	+	Silent	SNP	G	G	C	rs74923988		TCGA-SX-A7SQ-01A-12D-A35Z-10	TCGA-SX-A7SQ-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2aa8e8d1-bc6d-4efa-82ef-120034ca6bcc	8ccf0feb-ec04-4877-b269-2a824a396344	.	C17orf100	NM_001105520	exon1	c.G312C	p.P104P	GACCCCGCGGCCA	.	126.0	6.0	76.0	0.0	.	4	.	.	.	weak	G|0.500;C|0.500	0.500	PASS	Atlas-SNP
PRPSAP2	5636	hgsc.bcm.edu	hg19	17	18770619	18770619	+	Silent	SNP	A	A	G	novel		TCGA-SX-A7SQ-01A-12D-A35Z-10	TCGA-SX-A7SQ-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2aa8e8d1-bc6d-4efa-82ef-120034ca6bcc	8ccf0feb-ec04-4877-b269-2a824a396344	.	PRPSAP2	NM_001243940	exon3	c.A144G	p.K48K	GGGCAAAGTGCAG	.	83.0	46.0	83.0	0.0	.	23	.	.	.	none	.	.	PASS	Atlas-SNP
SRCIN1	80725	hgsc.bcm.edu	hg19	17	36714573	36714573	+	Silent	SNP	C	C	A	novel		TCGA-SX-A7SQ-01A-12D-A35Z-10	TCGA-SX-A7SQ-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2aa8e8d1-bc6d-4efa-82ef-120034ca6bcc	8ccf0feb-ec04-4877-b269-2a824a396344	.	SRCIN1	NM_025248	exon11	c.G2091T	p.V697V	CTCCGACACGCGC	.	124.0	78.0	95.0	0.0	.	66	.	.	.	none	.	.	PASS	Atlas-SNP
HAP1	9001	hgsc.bcm.edu	hg19	17	39887810	39887810	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-SX-A7SQ-01A-12D-A35Z-10	TCGA-SX-A7SQ-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2aa8e8d1-bc6d-4efa-82ef-120034ca6bcc	8ccf0feb-ec04-4877-b269-2a824a396344	.	HAP1	NM_001079870	exon6	c.C1028T	p.A343V	TGAGAGGCCTGGA	.	224.0	75.0	210.0	0.0	.	48	.	.	.	none	.	.	PASS	Atlas-SNP
EZH1	2145	hgsc.bcm.edu	hg19	17	40864332	40864332	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-SX-A7SQ-01A-12D-A35Z-10	TCGA-SX-A7SQ-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2aa8e8d1-bc6d-4efa-82ef-120034ca6bcc	8ccf0feb-ec04-4877-b269-2a824a396344	.	EZH1	NM_001991	exon12	c.T1376C	p.L459P	CCCAGAAGCCTGG	.	118.0	67.0	104.0	0.0	.	62	.	.	.	none	.	.	PASS	Atlas-SNP
MPP2	4355	hgsc.bcm.edu	hg19	17	41975630	41975630	+	Silent	SNP	C	C	T	novel		TCGA-SX-A7SQ-01A-12D-A35Z-10	TCGA-SX-A7SQ-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2aa8e8d1-bc6d-4efa-82ef-120034ca6bcc	8ccf0feb-ec04-4877-b269-2a824a396344	.	MPP2	NM_005374	exon3	c.G150A	p.K50K	CTGTACCTTGGCC	.	110.0	38.0	76.0	0.0	.	67	.	.	.	none	.	.	PASS	Atlas-SNP
TANC2	26115	hgsc.bcm.edu	hg19	17	61497660	61497660	+	Silent	SNP	C	C	T	novel		TCGA-SX-A7SQ-01A-12D-A35Z-10	TCGA-SX-A7SQ-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2aa8e8d1-bc6d-4efa-82ef-120034ca6bcc	8ccf0feb-ec04-4877-b269-2a824a396344	.	TANC2	NM_025185	exon25	c.C4317T	p.V1439V	CCCGGTCATCCAG	.	103.0	33.0	86.0	0.0	.	266	.	.	.	none	.	.	PASS	Atlas-SNP
DDX5	1655	hgsc.bcm.edu	hg19	17	62496291	62496291	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-SX-A7SQ-01A-12D-A35Z-10	TCGA-SX-A7SQ-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2aa8e8d1-bc6d-4efa-82ef-120034ca6bcc	8ccf0feb-ec04-4877-b269-2a824a396344	.	DDX5	NM_004396	exon13	c.A1595G	p.N532S	ACACCATTCTGAG	.	151.0	42.0	139.0	0.0	.	101	.	.	.	none	.	.	PASS	Atlas-SNP
RNF213	57674	hgsc.bcm.edu	hg19	17	78332113	78332113	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-SX-A7SQ-01A-12D-A35Z-10	TCGA-SX-A7SQ-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2aa8e8d1-bc6d-4efa-82ef-120034ca6bcc	8ccf0feb-ec04-4877-b269-2a824a396344	.	RNF213	NM_001256071	exon37	c.G10888A	p.G3630S	GTCCAAGGTGCTG	.	133.0	71.0	100.0	0.0	.	766	.	.	.	none	.	.	PASS	Atlas-SNP
SOGA2	23255	hgsc.bcm.edu	hg19	18	8819148	8819148	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SX-A7SQ-01A-12D-A35Z-10	TCGA-SX-A7SQ-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2aa8e8d1-bc6d-4efa-82ef-120034ca6bcc	8ccf0feb-ec04-4877-b269-2a824a396344	.	.	NM_015210	exon13	c.G3047T	p.R1016M	CGGACAGGTGCTC	.	93.0	38.0	109.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF14	7561	hgsc.bcm.edu	hg19	19	19823847	19823847	+	Silent	SNP	T	T	A	novel		TCGA-SX-A7SQ-01A-12D-A35Z-10	TCGA-SX-A7SQ-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2aa8e8d1-bc6d-4efa-82ef-120034ca6bcc	8ccf0feb-ec04-4877-b269-2a824a396344	.	ZNF14	NM_021030	exon4	c.A243T	p.G81G	GGTTTCTCCACAT	.	107.0	47.0	93.0	0.0	.	89	.	.	.	none	.	.	PASS	Atlas-SNP
SYNE4	163183	hgsc.bcm.edu	hg19	19	36497828	36497828	+	Silent	SNP	G	G	T	novel		TCGA-SX-A7SQ-01A-12D-A35Z-10	TCGA-SX-A7SQ-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2aa8e8d1-bc6d-4efa-82ef-120034ca6bcc	8ccf0feb-ec04-4877-b269-2a824a396344	.	.	NM_001039876	exon4	c.C442A	p.R148R	CCCCTCGTAGGTC	.	70.0	30.0	60.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
GPCPD1	56261	hgsc.bcm.edu	hg19	20	5574056	5574056	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-SX-A7SQ-01A-12D-A35Z-10	TCGA-SX-A7SQ-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2aa8e8d1-bc6d-4efa-82ef-120034ca6bcc	8ccf0feb-ec04-4877-b269-2a824a396344	.	GPCPD1	NM_019593	exon4	c.A148G	p.M50V	ATAGCATGCTGTG	.	87.0	25.0	65.0	0.0	.	52	.	.	.	none	.	.	PASS	Atlas-SNP
RBM39	9584	hgsc.bcm.edu	hg19	20	34313043	34313043	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-SX-A7SQ-01A-12D-A35Z-10	TCGA-SX-A7SQ-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2aa8e8d1-bc6d-4efa-82ef-120034ca6bcc	8ccf0feb-ec04-4877-b269-2a824a396344	.	RBM39	NM_184234	exon7	c.G451C	p.D151H	TTGCATCTCTTTC	.	286.0	175.0	245.0	0.0	.	68	.	.	.	none	.	.	PASS	Atlas-SNP
SRSF6	6431	hgsc.bcm.edu	hg19	20	42089554	42089554	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-SX-A7SQ-01A-12D-A35Z-10	TCGA-SX-A7SQ-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2aa8e8d1-bc6d-4efa-82ef-120034ca6bcc	8ccf0feb-ec04-4877-b269-2a824a396344	.	SRSF6	NM_006275	exon6	c.A886G	p.R296G	AGATCAAGGAGCC	.	226.0	130.0	219.0	0.0	.	37	.	.	.	none	.	.	PASS	Atlas-SNP
SRSF6	6431	hgsc.bcm.edu	hg19	20	42089559	42089559	+	Silent	SNP	C	C	T	novel		TCGA-SX-A7SQ-01A-12D-A35Z-10	TCGA-SX-A7SQ-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2aa8e8d1-bc6d-4efa-82ef-120034ca6bcc	8ccf0feb-ec04-4877-b269-2a824a396344	.	SRSF6	NM_006275	exon6	c.C891T	p.S297S	AAGGAGCCAGTCC	.	230.0	132.0	207.0	0.0	.	37	.	.	.	none	.	.	PASS	Atlas-SNP
MYO18B	84700	hgsc.bcm.edu	hg19	22	26286842	26286842	+	Silent	SNP	G	G	A	novel		TCGA-SX-A7SQ-01A-12D-A35Z-10	TCGA-SX-A7SQ-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2aa8e8d1-bc6d-4efa-82ef-120034ca6bcc	8ccf0feb-ec04-4877-b269-2a824a396344	.	MYO18B	NM_032608	exon26	c.G4434A	p.K1478K	GCTCAAGGTGAGT	.	66.0	34.0	74.0	0.0	.	322	.	.	.	none	.	.	PASS	Atlas-SNP
ABCA5	23461	hgsc.bcm.edu	hg19	17	67286078	67286078	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-SX-A7SQ-01A-12D-A35Z-10	TCGA-SX-A7SQ-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2aa8e8d1-bc6d-4efa-82ef-120034ca6bcc	8ccf0feb-ec04-4877-b269-2a824a396344	.	ABCA5	NM_172232	exon13	c.1708delG	p.V570fs	.	.	71.0	44.0	69.0	0.0	.	162	.	0.619718	0	none	.	.	PASS	Atlas-Indel,Pindel
SPCS3	60559	hgsc.bcm.edu	hg19	4	177249348	177249348	+	Splice_Site	DEL	G	G	-	novel		TCGA-SX-A7SQ-01A-12D-A35Z-10	TCGA-SX-A7SQ-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2aa8e8d1-bc6d-4efa-82ef-120034ca6bcc	8ccf0feb-ec04-4877-b269-2a824a396344	.	SPCS3	NM_021928	exon5	c.411-2G>-	.	.	.	54.0	16.0	87.0	0.0	.	15	.	0.296296	0	none	.	.	PASS	Atlas-INDEL
FAM160A1	729830	hgsc.bcm.edu	hg19	4	152570836	152570836	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-SX-A7SQ-01A-12D-A35Z-10	TCGA-SX-A7SQ-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2aa8e8d1-bc6d-4efa-82ef-120034ca6bcc	8ccf0feb-ec04-4877-b269-2a824a396344	.	FAM160A1	NM_001109977	exon11	c.1642delG	p.A548fs	.	.	82.0	39.0	117.0	0.0	.	60	.	0.47561	0	none	.	.	PASS	Atlas-Indel,Pindel
ATP8A2	51761	hgsc.bcm.edu	hg19	13	26542768	26542768	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-SX-A7SQ-01A-12D-A35Z-10	TCGA-SX-A7SQ-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2aa8e8d1-bc6d-4efa-82ef-120034ca6bcc	8ccf0feb-ec04-4877-b269-2a824a396344	.	ATP8A2	NM_016529	exon35	c.3327delC	p.T1109fs	.	.	243.0	79.0	176.0	0.0	.	181	.	0.325103	0	none	.	.	PASS	Atlas-Indel,Pindel
C19orf44	84167	hgsc.bcm.edu	hg19	19	16617533	16617539	+	Frame_Shift_Del	DEL	CGCTTGA	CGCTTGA	-	novel		TCGA-SX-A7SQ-01A-12D-A35Z-10	TCGA-SX-A7SQ-10A-01D-A35Z-10	CGCTTGA	CGCTTGA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2aa8e8d1-bc6d-4efa-82ef-120034ca6bcc	8ccf0feb-ec04-4877-b269-2a824a396344	.	C19orf44	NM_032207	exon4	c.1096_1102del	p.366_368del	.	.	222.0	69.0	257.0	0.0	.	47	.	0.310811	0	none	.	.	PASS	Atlas-Indel,Pindel
EFTUD1	79631	hgsc.bcm.edu	hg19	15	82545087	82545087	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-SX-A7SQ-01A-12D-A35Z-10	TCGA-SX-A7SQ-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2aa8e8d1-bc6d-4efa-82ef-120034ca6bcc	8ccf0feb-ec04-4877-b269-2a824a396344	.	EFTUD1	NM_024580	exon4	c.190delC	p.Q64fs	.	.	199.0	88.0	229.0	0.0	.	74	.	0.442211	0	none	.	.	PASS	Atlas-Indel,Pindel
BOD1L1	259282	hgsc.bcm.edu	hg19	4	13605423	13605423	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-SX-A7SQ-01A-12D-A35Z-10	TCGA-SX-A7SQ-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2aa8e8d1-bc6d-4efa-82ef-120034ca6bcc	8ccf0feb-ec04-4877-b269-2a824a396344	.	.	NM_148894	exon10	c.3102delG	p.K1034fs	.	.	92.0	37.0	95.0	0.0	.	.	.	0.402174	0	none	.	.	PASS	Atlas-Indel,Pindel
HIRA	7290	hgsc.bcm.edu	hg19	22	19344495	19344496	+	Frame_Shift_Ins	INS	-	-	AT	novel		TCGA-SX-A7SQ-01A-12D-A35Z-10	TCGA-SX-A7SQ-10A-01D-A35Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2aa8e8d1-bc6d-4efa-82ef-120034ca6bcc	8ccf0feb-ec04-4877-b269-2a824a396344	.	HIRA	NM_003325	exon19	c.2314_2315insAT	p.L772fs	.	.	126.0	33.0	98.0	0.0	.	100	.	0.261905	0	none	.	.	PASS	Atlas-Indel,Pindel
CBS	875	hgsc.bcm.edu	hg19	21	44479371	44479371	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-SX-A7SQ-01A-12D-A35Z-10	TCGA-SX-A7SQ-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2aa8e8d1-bc6d-4efa-82ef-120034ca6bcc	8ccf0feb-ec04-4877-b269-2a824a396344	.	CBS	NM_000071	exon13	c.1189delC	p.L397X	.	.	32.0	15.0	59.0	0.0	.	85	.	0.46875	0	none	.	.	PASS	Atlas-Indel,Pindel
LRPAP1	4043	hgsc.bcm.edu	hg19	4	3519844	3519845	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-SX-A7SQ-01A-12D-A35Z-10	TCGA-SX-A7SQ-10A-01D-A35Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2aa8e8d1-bc6d-4efa-82ef-120034ca6bcc	8ccf0feb-ec04-4877-b269-2a824a396344	.	LRPAP1	NM_002337	exon5	c.668_669insG	p.E223fs	.	.	50.0	30.0	50.0	0.0	.	29	.	0.6	0	none	.	.	PASS	Atlas-Indel,Pindel
HIRA	7290	hgsc.bcm.edu	hg19	22	19344494	19344495	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-SX-A7SQ-01A-12D-A35Z-10	TCGA-SX-A7SQ-10A-01D-A35Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2aa8e8d1-bc6d-4efa-82ef-120034ca6bcc	8ccf0feb-ec04-4877-b269-2a824a396344	.	HIRA	NM_003325	exon19	c.2315_2316insG	p.L772fs	.	.	125.0	34.0	96.0	0.0	.	100	.	0.272	0	none	.	.	PASS	Atlas-INDEL
TRIM49	57093	hgsc.bcm.edu	hg19	11	89531578	89531579	+	Frame_Shift_Del	DEL	AT	AT	-	novel		TCGA-SX-A7SQ-01A-12D-A35Z-10	TCGA-SX-A7SQ-10A-01D-A35Z-10	AT	AT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2aa8e8d1-bc6d-4efa-82ef-120034ca6bcc	8ccf0feb-ec04-4877-b269-2a824a396344	.	TRIM49	NM_020358	exon8	c.1079_1080del	p.360_360del	.	.	254.0	85.0	265.0	0.0	.	45	.	0.334646	0	none	.	.	PASS	Atlas-Indel,Pindel
SPCS3	60559	hgsc.bcm.edu	hg19	4	177249348	177249349	+	Splice_Site	DEL	GG	GG	-	novel		TCGA-SX-A7SQ-01A-12D-A35Z-10	TCGA-SX-A7SQ-10A-01D-A35Z-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2aa8e8d1-bc6d-4efa-82ef-120034ca6bcc	8ccf0feb-ec04-4877-b269-2a824a396344	.	SPCS3	.	.	.	.	.	.	56.0	14.0	86.0	0.0	.	15	.	0.250	.	none	.	.	PASS	Pindel
RPN1	6184	hgsc.bcm.edu	hg19	3	128356918	128356918	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-SX-A7SQ-01A-12D-A35Z-10	TCGA-SX-A7SQ-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2aa8e8d1-bc6d-4efa-82ef-120034ca6bcc	8ccf0feb-ec04-4877-b269-2a824a396344	.	RPN1	NM_002950	exon3	c.358delG	p.A120fs	.	.	167.0	31.0	122.0	0.0	.	39	.	0.186	.	none	.	.	PASS	Pindel