Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
UBR4	23352	hgsc.bcm.edu	hg19	1	19526243	19526243	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-SX-A7SP-01A-11D-A34Z-10	TCGA-SX-A7SP-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6abb591-8bba-4022-b736-659828bb3947	68027171-3c57-48ce-b796-f96345b1c177	UBR4,NS,carcinoma,0,1	UBR4	NM_020765	exon3	c.C280G	p.R94G	GGTTCCGGGGAAC	.	30.0	10.0	32.0	0.0	.	415	.	.	.	none	.	.	PASS	Atlas-SNP
MATN1	4146	hgsc.bcm.edu	hg19	1	31191691	31191691	+	Silent	SNP	C	C	T	novel		TCGA-SX-A7SP-01A-11D-A34Z-10	TCGA-SX-A7SP-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6abb591-8bba-4022-b736-659828bb3947	68027171-3c57-48ce-b796-f96345b1c177	.	MATN1	NM_002379	exon3	c.G555A	p.K185K	CGTGGCCTTGTCC	.	43.0	14.0	50.0	0.0	.	28	.	.	.	none	.	.	PASS	Atlas-SNP
DNTTIP2	30836	hgsc.bcm.edu	hg19	1	94341933	94341933	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-SX-A7SP-01A-11D-A34Z-10	TCGA-SX-A7SP-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6abb591-8bba-4022-b736-659828bb3947	68027171-3c57-48ce-b796-f96345b1c177	.	DNTTIP2	NM_014597	exon2	c.A1558G	p.K520E	CTTCTTTTTCTTC	.	259.0	74.0	201.0	0.0	.	59	.	.	.	none	.	.	PASS	Atlas-SNP
PDCL3	79031	hgsc.bcm.edu	hg19	2	101183077	101183077	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-SX-A7SP-01A-11D-A34Z-10	TCGA-SX-A7SP-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6abb591-8bba-4022-b736-659828bb3947	68027171-3c57-48ce-b796-f96345b1c177	.	PDCL3	NM_024065	exon2	c.T119C	p.L40P	GCATCCTCCAGCA	.	165.0	53.0	129.0	0.0	.	27	.	.	.	none	.	.	PASS	Atlas-SNP
DYTN	391475	hgsc.bcm.edu	hg19	2	207527877	207527877	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-SX-A7SP-01A-11D-A34Z-10	TCGA-SX-A7SP-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6abb591-8bba-4022-b736-659828bb3947	68027171-3c57-48ce-b796-f96345b1c177	.	DYTN	NM_001093730	exon11	c.C1383G	p.H461Q	GGTGCTGTGCAAA	.	353.0	108.0	312.0	0.0	.	168	.	.	.	none	.	.	PASS	Atlas-SNP
TNS1	7145	hgsc.bcm.edu	hg19	2	218712647	218712647	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-SX-A7SP-01A-11D-A34Z-10	TCGA-SX-A7SP-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6abb591-8bba-4022-b736-659828bb3947	68027171-3c57-48ce-b796-f96345b1c177	.	TNS1	NM_022648	exon17	c.G2218C	p.G740R	AAGCCCCTGGCCA	.	57.0	15.0	42.0	0.0	.	251	.	.	.	none	.	.	PASS	Atlas-SNP
WNT7A	7476	hgsc.bcm.edu	hg19	3	13860881	13860881	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-SX-A7SP-01A-11D-A34Z-10	TCGA-SX-A7SP-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6abb591-8bba-4022-b736-659828bb3947	68027171-3c57-48ce-b796-f96345b1c177	.	WNT7A	NM_004625	exon4	c.G610A	p.G204S	ACACGCCGTGGCA	.	66.0	31.0	56.0	0.0	.	70	.	.	.	none	.	.	PASS	Atlas-SNP
ARIH2	10425	hgsc.bcm.edu	hg19	3	49005966	49005966	+	Splice_Site	SNP	G	G	T	novel		TCGA-SX-A7SP-01A-11D-A34Z-10	TCGA-SX-A7SP-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6abb591-8bba-4022-b736-659828bb3947	68027171-3c57-48ce-b796-f96345b1c177	.	ARIH2	NM_006321	exon7	c.539-1G>T	.	TCAACAGGAGTCT	.	88.0	43.0	66.0	0.0	.	32	.	.	.	none	.	.	PASS	Atlas-SNP
TMF1	7110	hgsc.bcm.edu	hg19	3	69092928	69092928	+	Silent	SNP	G	G	A	novel		TCGA-SX-A7SP-01A-11D-A34Z-10	TCGA-SX-A7SP-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6abb591-8bba-4022-b736-659828bb3947	68027171-3c57-48ce-b796-f96345b1c177	.	TMF1	NM_007114	exon4	c.C1551T	p.A517A	TTTGCAGGCTAGT	.	572.0	28.0	359.0	0.0	.	77	.	.	.	none	.	.	PASS	Atlas-SNP
KLB	152831	hgsc.bcm.edu	hg19	4	39449950	39449950	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-SX-A7SP-01A-11D-A34Z-10	TCGA-SX-A7SP-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6abb591-8bba-4022-b736-659828bb3947	68027171-3c57-48ce-b796-f96345b1c177	.	KLB	NM_175737	exon5	c.G2779C	p.G927R	ATCAAAGGCTATT	.	291.0	90.0	225.0	0.0	.	95	.	.	.	none	.	.	PASS	Atlas-SNP
SLC10A4	201780	hgsc.bcm.edu	hg19	4	48487117	48487117	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-SX-A7SP-01A-11D-A34Z-10	TCGA-SX-A7SP-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6abb591-8bba-4022-b736-659828bb3947	68027171-3c57-48ce-b796-f96345b1c177	.	SLC10A4	NM_152679	exon2	c.C759A	p.F253L	CGTCTTCATTCGC	.	165.0	56.0	148.0	0.0	.	23	.	.	.	none	.	.	PASS	Atlas-SNP
YTHDC1	91746	hgsc.bcm.edu	hg19	4	69197866	69197866	+	Silent	SNP	G	G	A	novel		TCGA-SX-A7SP-01A-11D-A34Z-10	TCGA-SX-A7SP-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6abb591-8bba-4022-b736-659828bb3947	68027171-3c57-48ce-b796-f96345b1c177	.	YTHDC1	NM_001031732	exon7	c.C1077T	p.L359L	CTTTATGAGGAAA	.	125.0	27.0	125.0	0.0	.	81	.	.	.	none	.	.	PASS	Atlas-SNP
KIAA1109	84162	hgsc.bcm.edu	hg19	4	123160922	123160922	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-SX-A7SP-01A-11D-A34Z-10	TCGA-SX-A7SP-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6abb591-8bba-4022-b736-659828bb3947	68027171-3c57-48ce-b796-f96345b1c177	.	KIAA1109	NM_015312	exon27	c.T4085G	p.F1362C	GAAGTTTTGGTTC	.	157.0	58.0	120.0	0.0	.	424	.	.	.	none	.	.	PASS	Atlas-SNP
KIAA1109	84162	hgsc.bcm.edu	hg19	4	123170744	123170744	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-SX-A7SP-01A-11D-A34Z-10	TCGA-SX-A7SP-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6abb591-8bba-4022-b736-659828bb3947	68027171-3c57-48ce-b796-f96345b1c177	.	KIAA1109	NM_015312	exon34	c.C5617A	p.Q1873K	GATCAGCAAGCTG	.	171.0	59.0	120.0	0.0	.	424	.	.	.	none	.	.	PASS	Atlas-SNP
GPR98	84059	hgsc.bcm.edu	hg19	5	90041606	90041606	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-SX-A7SP-01A-11D-A34Z-10	TCGA-SX-A7SP-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6abb591-8bba-4022-b736-659828bb3947	68027171-3c57-48ce-b796-f96345b1c177	.	GPR98	NM_032119	exon52	c.T10968G	p.F3656L	TGCATTTGCTCAG	.	43.0	13.0	44.0	0.0	.	605	.	.	.	none	.	.	PASS	Atlas-SNP
GRM6	2916	hgsc.bcm.edu	hg19	5	178418914	178418914	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-SX-A7SP-01A-11D-A34Z-10	TCGA-SX-A7SP-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6abb591-8bba-4022-b736-659828bb3947	68027171-3c57-48ce-b796-f96345b1c177	.	GRM6	NM_000843	exon2	c.T675A	p.Y225X	TTCGCCATAGTTG	.	57.0	23.0	43.0	0.0	.	149	.	.	.	none	.	.	PASS	Atlas-SNP
RRP36	88745	hgsc.bcm.edu	hg19	6	42995142	42995142	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-SX-A7SP-01A-11D-A34Z-10	TCGA-SX-A7SP-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6abb591-8bba-4022-b736-659828bb3947	68027171-3c57-48ce-b796-f96345b1c177	.	RRP36	NM_033112	exon6	c.G570C	p.E190D	GCAGGAGCTGCAC	.	85.0	33.0	84.0	0.0	.	20	.	.	.	none	.	.	PASS	Atlas-SNP
RRP36	88745	hgsc.bcm.edu	hg19	6	42995151	42995151	+	Silent	SNP	G	G	C	novel		TCGA-SX-A7SP-01A-11D-A34Z-10	TCGA-SX-A7SP-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6abb591-8bba-4022-b736-659828bb3947	68027171-3c57-48ce-b796-f96345b1c177	.	RRP36	NM_033112	exon6	c.G579C	p.L193L	GCACCTGGCCCTG	.	84.0	31.0	88.0	0.0	.	20	.	.	.	none	.	.	PASS	Atlas-SNP
BMPER	168667	hgsc.bcm.edu	hg19	7	34125603	34125603	+	Silent	SNP	G	G	A	novel		TCGA-SX-A7SP-01A-11D-A34Z-10	TCGA-SX-A7SP-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6abb591-8bba-4022-b736-659828bb3947	68027171-3c57-48ce-b796-f96345b1c177	.	BMPER	NM_133468	exon14	c.G1644A	p.G548G	TCAAGGGACAGTC	.	128.0	24.0	66.0	0.0	.	131	.	.	.	none	.	.	PASS	Atlas-SNP
MUC17	140453	hgsc.bcm.edu	hg19	7	100683299	100683299	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-SX-A7SP-01A-11D-A34Z-10	TCGA-SX-A7SP-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6abb591-8bba-4022-b736-659828bb3947	68027171-3c57-48ce-b796-f96345b1c177	.	MUC17	NM_001040105	exon3	c.A8602T	p.S2868C	GAAGGAAGTACTC	.	82.0	38.0	51.0	0.0	.	804	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF862	643641	hgsc.bcm.edu	hg19	7	149545262	149545262	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-SX-A7SP-01A-11D-A34Z-10	TCGA-SX-A7SP-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6abb591-8bba-4022-b736-659828bb3947	68027171-3c57-48ce-b796-f96345b1c177	.	ZNF862	NM_001099220	exon4	c.T680A	p.V227D	GAGATGTTCTGGC	.	81.0	37.0	51.0	0.0	.	97	.	.	.	none	.	.	PASS	Atlas-SNP
NFX1	4799	hgsc.bcm.edu	hg19	9	33295177	33295177	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-SX-A7SP-01A-11D-A34Z-10	TCGA-SX-A7SP-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6abb591-8bba-4022-b736-659828bb3947	68027171-3c57-48ce-b796-f96345b1c177	.	NFX1	NM_147134	exon2	c.C785T	p.P262L	ATCCACCAAAACA	.	40.0	5.0	29.0	0.0	.	85	.	.	.	none	.	.	PASS	Atlas-SNP
PHF2	5253	hgsc.bcm.edu	hg19	9	96439004	96439004	+	Silent	SNP	C	C	A	rs75653373		TCGA-SX-A7SP-01A-11D-A34Z-10	TCGA-SX-A7SP-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6abb591-8bba-4022-b736-659828bb3947	68027171-3c57-48ce-b796-f96345b1c177	PHF2,colon,carcinoma,0,1	PHF2	NM_005392	exon21	c.C2961A	p.T987T	TACCACCCCGGCC	.	26.0	5.0	20.0	0.0	.	113	.	.	.	weak	C|0.500;A|0.500	0.500	PASS	Atlas-SNP
CDK5RAP2	55755	hgsc.bcm.edu	hg19	9	123313158	123313158	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-SX-A7SP-01A-11D-A34Z-10	TCGA-SX-A7SP-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6abb591-8bba-4022-b736-659828bb3947	68027171-3c57-48ce-b796-f96345b1c177	.	CDK5RAP2	NM_018249	exon4	c.A218G	p.E73G	AAGTTTTCTTTCT	.	155.0	54.0	125.0	0.0	.	157	.	.	.	none	.	.	PASS	Atlas-SNP
PRRC2B	84726	hgsc.bcm.edu	hg19	9	134319670	134319670	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-SX-A7SP-01A-11D-A34Z-10	TCGA-SX-A7SP-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6abb591-8bba-4022-b736-659828bb3947	68027171-3c57-48ce-b796-f96345b1c177	PRRC2B_ENST00000357304,NS,carcinoma,0,2	PRRC2B	NM_013318	exon5	c.G568A	p.V190I	AAGGGCGTCTTAG	.	34.0	11.0	28.0	0.0	.	266	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF37A	7587	hgsc.bcm.edu	hg19	10	38406703	38406703	+	Silent	SNP	T	T	C	novel		TCGA-SX-A7SP-01A-11D-A34Z-10	TCGA-SX-A7SP-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6abb591-8bba-4022-b736-659828bb3947	68027171-3c57-48ce-b796-f96345b1c177	.	ZNF37A	NM_003421	exon7	c.T624C	p.N208N	AGAAAATATCTTT	.	109.0	31.0	82.0	0.0	.	118	.	.	.	none	.	.	PASS	Atlas-SNP
SYT15	83849	hgsc.bcm.edu	hg19	10	46968622	46968622	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-SX-A7SP-01A-11D-A34Z-10	TCGA-SX-A7SP-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6abb591-8bba-4022-b736-659828bb3947	68027171-3c57-48ce-b796-f96345b1c177	.	SYT15	NM_031912	exon3	c.C314T	p.P105L	GATGCCGGGCAGG	.	24.0	6.0	16.0	0.0	.	165	.	.	.	none	.	.	PASS	Atlas-SNP
CNNM2	54805	hgsc.bcm.edu	hg19	10	104678459	104678459	+	Silent	SNP	C	C	A	novel		TCGA-SX-A7SP-01A-11D-A34Z-10	TCGA-SX-A7SP-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6abb591-8bba-4022-b736-659828bb3947	68027171-3c57-48ce-b796-f96345b1c177	.	CNNM2	NM_199076	exon1	c.C222A	p.I74I	GGTGATCATCGGG	.	28.0	11.0	26.0	0.0	.	119	.	.	.	none	.	.	PASS	Atlas-SNP
OR10A6	390093	hgsc.bcm.edu	hg19	11	7949415	7949415	+	Silent	SNP	G	G	C	novel		TCGA-SX-A7SP-01A-11D-A34Z-10	TCGA-SX-A7SP-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6abb591-8bba-4022-b736-659828bb3947	68027171-3c57-48ce-b796-f96345b1c177	.	OR10A6	NM_001004461	exon1	c.C795G	p.G265G	TGAGTAGCCAGAT	.	140.0	53.0	134.0	0.0	.	49	.	.	.	none	.	.	PASS	Atlas-SNP
OR10A6	390093	hgsc.bcm.edu	hg19	11	7949417	7949417	+	Missense_Mutation	SNP	C	C	T	rs374770684		TCGA-SX-A7SP-01A-11D-A34Z-10	TCGA-SX-A7SP-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6abb591-8bba-4022-b736-659828bb3947	68027171-3c57-48ce-b796-f96345b1c177	.	OR10A6	NM_001004461	exon1	c.G793A	p.G265S	AGTAGCCAGATTT	.	138.0	50.0	130.0	0.0	.	49	.	.	.	weak	.	.	PASS	Atlas-SNP
TMX2	51075	hgsc.bcm.edu	hg19	11	57506447	57506447	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-SX-A7SP-01A-11D-A34Z-10	TCGA-SX-A7SP-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6abb591-8bba-4022-b736-659828bb3947	68027171-3c57-48ce-b796-f96345b1c177	.	TMX2	NM_015959	exon6	c.T550A	p.Y184N	TTCAGATACAACT	.	85.0	16.0	71.0	0.0	.	29	.	.	.	none	.	.	PASS	Atlas-SNP
CNTN5	53942	hgsc.bcm.edu	hg19	11	99690484	99690484	+	Missense_Mutation	SNP	T	T	A	rs199899455		TCGA-SX-A7SP-01A-11D-A34Z-10	TCGA-SX-A7SP-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6abb591-8bba-4022-b736-659828bb3947	68027171-3c57-48ce-b796-f96345b1c177	.	CNTN5	NM_001243270	exon3	c.T265A	p.F89I	GATGCCTTCAAAC	.	64.0	7.0	51.0	0.0	.	324	.	.	.	weak	.	.	PASS	Atlas-SNP
DDX10	1662	hgsc.bcm.edu	hg19	11	108535923	108535923	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-SX-A7SP-01A-11D-A34Z-10	TCGA-SX-A7SP-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6abb591-8bba-4022-b736-659828bb3947	68027171-3c57-48ce-b796-f96345b1c177	.	DDX10	NM_004398	exon1	c.G43A	p.D15N	CGACCCGACCCGG	.	62.0	16.0	58.0	0.0	.	70	.	.	.	none	.	.	PASS	Atlas-SNP
PDE3A	5139	hgsc.bcm.edu	hg19	12	20774323	20774323	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-SX-A7SP-01A-11D-A34Z-10	TCGA-SX-A7SP-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6abb591-8bba-4022-b736-659828bb3947	68027171-3c57-48ce-b796-f96345b1c177	.	PDE3A	NM_000921	exon5	c.G1518C	p.K506N	TGTAAAGGCTAAA	.	85.0	17.0	62.0	0.0	.	184	.	.	.	none	.	.	PASS	Atlas-SNP
NCKAP5L	57701	hgsc.bcm.edu	hg19	12	50190029	50190029	+	Silent	SNP	C	C	T	novel		TCGA-SX-A7SP-01A-11D-A34Z-10	TCGA-SX-A7SP-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6abb591-8bba-4022-b736-659828bb3947	68027171-3c57-48ce-b796-f96345b1c177	.	NCKAP5L	NM_001037806	exon8	c.G1614A	p.P538P	TGACTGCGGGGGT	.	56.0	21.0	44.0	0.0	.	142	.	.	.	none	.	.	PASS	Atlas-SNP
MDM1	56890	hgsc.bcm.edu	hg19	12	68719340	68719340	+	Missense_Mutation	SNP	G	G	T	rs372443907	alternate_allele	TCGA-SX-A7SP-01A-11D-A34Z-10	TCGA-SX-A7SP-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6abb591-8bba-4022-b736-659828bb3947	68027171-3c57-48ce-b796-f96345b1c177	.	MDM1	NM_017440	exon4	c.C514A	p.R172S	TCTTACGCAGAAG	.	126.0	47.0	110.0	0.0	.	74	.	.	.	alt	.	.	PASS	Atlas-SNP
P2RX4	5025	hgsc.bcm.edu	hg19	12	121659899	121659899	+	Silent	SNP	T	T	A	novel		TCGA-SX-A7SP-01A-11D-A34Z-10	TCGA-SX-A7SP-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6abb591-8bba-4022-b736-659828bb3947	68027171-3c57-48ce-b796-f96345b1c177	.	P2RX4	NM_001256796	exon5	c.T405A	p.I135I	CCAGATTCCAGAT	.	76.0	19.0	88.0	0.0	.	27	.	.	.	none	.	.	PASS	Atlas-SNP
RNF34	80196	hgsc.bcm.edu	hg19	12	121858061	121858061	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-SX-A7SP-01A-11D-A34Z-10	TCGA-SX-A7SP-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6abb591-8bba-4022-b736-659828bb3947	68027171-3c57-48ce-b796-f96345b1c177	.	RNF34	NM_194271	exon5	c.C653A	p.T218N	AAATCACTTCAGC	.	56.0	7.0	66.0	0.0	.	54	.	.	.	none	.	.	PASS	Atlas-SNP
PITPNM2	57605	hgsc.bcm.edu	hg19	12	123470897	123470897	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-SX-A7SP-01A-11D-A34Z-10	TCGA-SX-A7SP-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6abb591-8bba-4022-b736-659828bb3947	68027171-3c57-48ce-b796-f96345b1c177	.	PITPNM2	NM_020845	exon25	c.T3727G	p.F1243V	TGATGAACTGCGG	.	32.0	10.0	38.0	0.0	.	105	.	.	.	none	.	.	PASS	Atlas-SNP
KCNRG	283518	hgsc.bcm.edu	hg19	13	50590073	50590073	+	Silent	SNP	A	A	T	novel		TCGA-SX-A7SP-01A-11D-A34Z-10	TCGA-SX-A7SP-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6abb591-8bba-4022-b736-659828bb3947	68027171-3c57-48ce-b796-f96345b1c177	.	KCNRG	NM_173605	exon1	c.A444T	p.S148S	ACCTTCAGCGCCG	.	167.0	58.0	137.0	0.0	.	29	.	.	.	none	.	.	PASS	Atlas-SNP
PCID2	55795	hgsc.bcm.edu	hg19	13	113832522	113832522	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-SX-A7SP-01A-11D-A34Z-10	TCGA-SX-A7SP-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6abb591-8bba-4022-b736-659828bb3947	68027171-3c57-48ce-b796-f96345b1c177	.	PCID2	NM_001258212	exon14	c.C1352T	p.T451M	CACACCGTGGACA	.	55.0	17.0	61.0	0.0	.	30	.	.	.	none	.	.	PASS	Atlas-SNP
CPNE6	9362	hgsc.bcm.edu	hg19	14	24545746	24545746	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-SX-A7SP-01A-11D-A34Z-10	TCGA-SX-A7SP-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6abb591-8bba-4022-b736-659828bb3947	68027171-3c57-48ce-b796-f96345b1c177	.	CPNE6	NM_006032	exon13	c.C1145T	p.P382L	TTGACCCGGAAAA	.	31.0	11.0	31.0	0.0	.	40	.	.	.	none	.	.	PASS	Atlas-SNP
MIS18BP1	55320	hgsc.bcm.edu	hg19	14	45705110	45705110	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-SX-A7SP-01A-11D-A34Z-10	TCGA-SX-A7SP-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6abb591-8bba-4022-b736-659828bb3947	68027171-3c57-48ce-b796-f96345b1c177	.	MIS18BP1	NM_018353	exon6	c.A1255G	p.I419V	GCTCTATAATTAC	.	349.0	116.0	312.0	0.0	.	92	.	.	.	none	.	.	PASS	Atlas-SNP
SIPA1L1	26037	hgsc.bcm.edu	hg19	14	72055984	72055984	+	Silent	SNP	G	G	A	novel		TCGA-SX-A7SP-01A-11D-A34Z-10	TCGA-SX-A7SP-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6abb591-8bba-4022-b736-659828bb3947	68027171-3c57-48ce-b796-f96345b1c177	.	SIPA1L1	NM_015556	exon2	c.G1395A	p.V465V	TGAAGTGCCCAAG	.	109.0	36.0	96.0	0.0	.	219	.	.	.	none	.	.	PASS	Atlas-SNP
BUB1B	701	hgsc.bcm.edu	hg19	15	40505677	40505677	+	Splice_Site	SNP	T	T	C	novel		TCGA-SX-A7SP-01A-11D-A34Z-10	TCGA-SX-A7SP-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6abb591-8bba-4022-b736-659828bb3947	68027171-3c57-48ce-b796-f96345b1c177	.	BUB1B	NM_001211	exon20	c.2678+2T>C	.	AACAGGTTGGTCC	.	74.0	28.0	68.0	0.0	.	71	.	.	.	none	.	.	PASS	Atlas-SNP
RNF111	54778	hgsc.bcm.edu	hg19	15	59358971	59358971	+	Silent	SNP	A	A	C	novel		TCGA-SX-A7SP-01A-11D-A34Z-10	TCGA-SX-A7SP-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6abb591-8bba-4022-b736-659828bb3947	68027171-3c57-48ce-b796-f96345b1c177	.	RNF111	NM_017610	exon6	c.A1375C	p.R459R	GACTCAAGGAGAA	.	73.0	20.0	54.0	0.0	.	179	.	.	.	none	.	.	PASS	Atlas-SNP
CORO2B	10391	hgsc.bcm.edu	hg19	15	69003120	69003120	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-SX-A7SP-01A-11D-A34Z-10	TCGA-SX-A7SP-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6abb591-8bba-4022-b736-659828bb3947	68027171-3c57-48ce-b796-f96345b1c177	.	CORO2B	NM_006091	exon4	c.A383T	p.E128V	TGACGGAGGCGCT	.	30.0	10.0	33.0	0.0	.	68	.	.	.	none	.	.	PASS	Atlas-SNP
UBL7	84993	hgsc.bcm.edu	hg19	15	74742277	74742277	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-SX-A7SP-01A-11D-A34Z-10	TCGA-SX-A7SP-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6abb591-8bba-4022-b736-659828bb3947	68027171-3c57-48ce-b796-f96345b1c177	.	UBL7	NM_201265	exon7	c.G664C	p.G222R	GCTCACCTGGCAT	.	57.0	26.0	68.0	0.0	.	24	.	.	.	none	.	.	PASS	Atlas-SNP
SNX29	92017	hgsc.bcm.edu	hg19	16	12145718	12145718	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-SX-A7SP-01A-11D-A34Z-10	TCGA-SX-A7SP-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6abb591-8bba-4022-b736-659828bb3947	68027171-3c57-48ce-b796-f96345b1c177	.	SNX29	NM_032167	exon8	c.A763C	p.K255Q	TGCAAAAAGGAGC	.	225.0	46.0	118.0	0.0	.	60	.	.	.	none	.	.	PASS	Atlas-SNP
MKL2	57496	hgsc.bcm.edu	hg19	16	14340738	14340738	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-SX-A7SP-01A-11D-A34Z-10	TCGA-SX-A7SP-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6abb591-8bba-4022-b736-659828bb3947	68027171-3c57-48ce-b796-f96345b1c177	.	MKL2	NM_014048	exon12	c.T1621C	p.S541P	TTGAGTTCATCTC	.	88.0	36.0	65.0	0.0	.	103	.	.	.	none	.	.	PASS	Atlas-SNP
C16orf88	400506	hgsc.bcm.edu	hg19	16	19726133	19726133	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SX-A7SP-01A-11D-A34Z-10	TCGA-SX-A7SP-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6abb591-8bba-4022-b736-659828bb3947	68027171-3c57-48ce-b796-f96345b1c177	.	C16orf88	NM_001012991	exon2	c.C225A	p.S75R	AAGGGTGCTGACA	.	74.0	16.0	68.0	0.0	.	41	.	.	.	none	.	.	PASS	Atlas-SNP
GAS8	2622	hgsc.bcm.edu	hg19	16	90109648	90109648	+	Silent	SNP	C	C	T	novel		TCGA-SX-A7SP-01A-11D-A34Z-10	TCGA-SX-A7SP-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6abb591-8bba-4022-b736-659828bb3947	68027171-3c57-48ce-b796-f96345b1c177	.	GAS8	NM_001481	exon11	c.C1332T	p.A444A	GCTGGCCTTCGGG	.	29.0	8.0	16.0	0.0	.	29	.	.	.	none	.	.	PASS	Atlas-SNP
RNMTL1	55178	hgsc.bcm.edu	hg19	17	686403	686403	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-SX-A7SP-01A-11D-A34Z-10	TCGA-SX-A7SP-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6abb591-8bba-4022-b736-659828bb3947	68027171-3c57-48ce-b796-f96345b1c177	.	RNMTL1	NM_018146	exon2	c.C395T	p.S132L	TCATTTCAGACGC	.	86.0	12.0	44.0	0.0	.	25	.	.	.	none	.	.	PASS	Atlas-SNP
SMCR8	140775	hgsc.bcm.edu	hg19	17	18219977	18219977	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-SX-A7SP-01A-11D-A34Z-10	TCGA-SX-A7SP-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6abb591-8bba-4022-b736-659828bb3947	68027171-3c57-48ce-b796-f96345b1c177	.	SMCR8	NM_144775	exon1	c.G874A	p.D292N	TCTGCCGACACAG	.	100.0	26.0	70.0	0.0	.	62	.	.	.	none	.	.	PASS	Atlas-SNP
KRTAP4-7	100132476	hgsc.bcm.edu	hg19	17	39240805	39240805	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SX-A7SP-01A-11D-A34Z-10	TCGA-SX-A7SP-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6abb591-8bba-4022-b736-659828bb3947	68027171-3c57-48ce-b796-f96345b1c177	.	KRTAP4-7	NM_033061	exon1	c.G347T	p.R116L	GCTGCCGCCCCTG	.	20.0	6.0	11.0	0.0	.	49	.	.	.	none	.	.	PASS	Atlas-SNP
KIF2B	84643	hgsc.bcm.edu	hg19	17	51902187	51902187	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-SX-A7SP-01A-11D-A34Z-10	TCGA-SX-A7SP-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6abb591-8bba-4022-b736-659828bb3947	68027171-3c57-48ce-b796-f96345b1c177	.	KIF2B	NM_032559	exon1	c.T1793C	p.V598A	AAGAGGTTGAAAC	.	73.0	16.0	38.0	0.0	.	254	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF407	55628	hgsc.bcm.edu	hg19	18	72775890	72775890	+	Silent	SNP	G	G	A	novel		TCGA-SX-A7SP-01A-11D-A34Z-10	TCGA-SX-A7SP-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6abb591-8bba-4022-b736-659828bb3947	68027171-3c57-48ce-b796-f96345b1c177	.	ZNF407	NM_017757	exon8	c.G6213A	p.R2071R	GGAGCGGGCACAG	.	62.0	24.0	44.0	0.0	.	231	.	.	.	none	.	.	PASS	Atlas-SNP
KCNG2	26251	hgsc.bcm.edu	hg19	18	77659475	77659475	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-SX-A7SP-01A-11D-A34Z-10	TCGA-SX-A7SP-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6abb591-8bba-4022-b736-659828bb3947	68027171-3c57-48ce-b796-f96345b1c177	.	KCNG2	NM_012283	exon2	c.T1060A	p.S354T	GACTTCTCCAGCG	.	69.0	7.0	68.0	0.0	.	48	.	.	.	none	.	.	PASS	Atlas-SNP
PRKCSH	5589	hgsc.bcm.edu	hg19	19	11560110	11560110	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SX-A7SP-01A-11D-A34Z-10	TCGA-SX-A7SP-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6abb591-8bba-4022-b736-659828bb3947	68027171-3c57-48ce-b796-f96345b1c177	.	PRKCSH	NM_002743	exon17	c.G1470T	p.M490I	GACCATGGTGACC	.	62.0	24.0	45.0	0.0	.	55	.	.	.	none	.	.	PASS	Atlas-SNP
SLC1A6	6511	hgsc.bcm.edu	hg19	19	15061136	15061136	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-SX-A7SP-01A-11D-A34Z-10	TCGA-SX-A7SP-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6abb591-8bba-4022-b736-659828bb3947	68027171-3c57-48ce-b796-f96345b1c177	.	SLC1A6	NM_005071	exon9	c.G1566T	p.L522F	CTGAGACAAGTGC	.	58.0	16.0	74.0	0.0	.	111	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF616	90317	hgsc.bcm.edu	hg19	19	52618818	52618818	+	Silent	SNP	A	A	T	novel		TCGA-SX-A7SP-01A-11D-A34Z-10	TCGA-SX-A7SP-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6abb591-8bba-4022-b736-659828bb3947	68027171-3c57-48ce-b796-f96345b1c177	.	ZNF616	NM_178523	exon4	c.T1599A	p.R533R	AGCTGAACGGTCA	.	82.0	23.0	101.0	0.0	.	109	.	.	.	none	.	.	PASS	Atlas-SNP
ISOC2	79763	hgsc.bcm.edu	hg19	19	55967191	55967191	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SX-A7SP-01A-11D-A34Z-10	TCGA-SX-A7SP-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6abb591-8bba-4022-b736-659828bb3947	68027171-3c57-48ce-b796-f96345b1c177	.	ISOC2	NM_001136201	exon3	c.C160A	p.P54T	TGACTGGCACCTC	.	53.0	11.0	43.0	0.0	.	16	.	.	.	none	.	.	PASS	Atlas-SNP
ZSCAN1	284312	hgsc.bcm.edu	hg19	19	58549300	58549300	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SX-A7SP-01A-11D-A34Z-10	TCGA-SX-A7SP-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6abb591-8bba-4022-b736-659828bb3947	68027171-3c57-48ce-b796-f96345b1c177	.	ZSCAN1	NM_182572	exon3	c.G96T	p.R32S	CCCCAGGGACACC	.	19.0	6.0	16.0	0.0	.	102	.	.	.	none	.	.	PASS	Atlas-SNP
HNF4A	3172	hgsc.bcm.edu	hg19	20	43036091	43036091	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-SX-A7SP-01A-11D-A34Z-10	TCGA-SX-A7SP-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6abb591-8bba-4022-b736-659828bb3947	68027171-3c57-48ce-b796-f96345b1c177	.	HNF4A	NM_178849	exon3	c.T361C	p.F121L	AAATGCTTCCGGG	.	31.0	15.0	23.0	0.0	.	150	.	.	.	none	.	.	PASS	Atlas-SNP
PCK1	5105	hgsc.bcm.edu	hg19	20	56137207	56137207	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-SX-A7SP-01A-11D-A34Z-10	TCGA-SX-A7SP-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6abb591-8bba-4022-b736-659828bb3947	68027171-3c57-48ce-b796-f96345b1c177	.	PCK1	NM_002591	exon3	c.C305T	p.T102I	GAGACACAGTGCC	.	55.0	10.0	52.0	0.0	.	95	.	.	.	none	.	.	PASS	Atlas-SNP
ASCC2	84164	hgsc.bcm.edu	hg19	22	30188510	30188510	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-SX-A7SP-01A-11D-A34Z-10	TCGA-SX-A7SP-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6abb591-8bba-4022-b736-659828bb3947	68027171-3c57-48ce-b796-f96345b1c177	.	ASCC2	NM_032204	exon18	c.C1934G	p.P645R	ACCTGAGGGATGG	.	123.0	51.0	87.0	0.0	.	53	.	.	.	none	.	.	PASS	Atlas-SNP
SUPT20HL1	100130302	hgsc.bcm.edu	hg19	X	24382435	24382435	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-SX-A7SP-01A-11D-A34Z-10	TCGA-SX-A7SP-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6abb591-8bba-4022-b736-659828bb3947	68027171-3c57-48ce-b796-f96345b1c177	.	.	NM_001136234	exon1	c.C1558G	p.P520A	CCTGCTCCTGCTC	.	151.0	21.0	85.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
DMD	1756	hgsc.bcm.edu	hg19	X	32486636	32486636	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-SX-A7SP-01A-11D-A34Z-10	TCGA-SX-A7SP-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6abb591-8bba-4022-b736-659828bb3947	68027171-3c57-48ce-b796-f96345b1c177	.	DMD	NM_004006	exon23	c.G3141C	p.M1047I	TTTATTCATTTGC	.	547.0	31.0	354.0	0.0	.	2127	.	.	.	none	.	.	PASS	Atlas-SNP
KDM6A	7403	hgsc.bcm.edu	hg19	X	44949073	44949073	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-SX-A7SP-01A-11D-A34Z-10	TCGA-SX-A7SP-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6abb591-8bba-4022-b736-659828bb3947	68027171-3c57-48ce-b796-f96345b1c177	.	KDM6A	NM_021140	exon25	c.C3634T	p.Q1212X	TTTATTCAGCGAC	.	553.0	263.0	344.0	0.0	.	274	.	.	.	none	.	.	PASS	Atlas-SNP
RLIM	51132	hgsc.bcm.edu	hg19	X	73811367	73811367	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SX-A7SP-01A-11D-A34Z-10	TCGA-SX-A7SP-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6abb591-8bba-4022-b736-659828bb3947	68027171-3c57-48ce-b796-f96345b1c177	.	RLIM	NM_183353	exon5	c.C1783A	p.H595N	TGCAGTGGACATG	.	364.0	167.0	205.0	0.0	.	90	.	.	.	none	.	.	PASS	Atlas-SNP
SMARCA1	6594	hgsc.bcm.edu	hg19	X	128614706	128614706	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-SX-A7SP-01A-11D-A34Z-10	TCGA-SX-A7SP-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6abb591-8bba-4022-b736-659828bb3947	68027171-3c57-48ce-b796-f96345b1c177	.	SMARCA1	NM_003069	exon19	c.T2414C	p.L805P	TAATAAAGAATTT	.	435.0	218.0	258.0	1.0	.	126	.	.	.	none	.	.	PASS	Atlas-SNP
SLC22A23	63027	hgsc.bcm.edu	hg19	6	3456326	3456326	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-SX-A7SP-01A-11D-A34Z-10	TCGA-SX-A7SP-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6abb591-8bba-4022-b736-659828bb3947	68027171-3c57-48ce-b796-f96345b1c177	.	SLC22A23	NM_015482	exon1	c.469delA	p.T157fs	.	.	76.0	21.0	67.0	0.0	.	89	.	0.276316	0	none	.	.	PASS	Atlas-Indel,Pindel
ZNF326	284695	hgsc.bcm.edu	hg19	1	90493075	90493075	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-SX-A7SP-01A-11D-A34Z-10	TCGA-SX-A7SP-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6abb591-8bba-4022-b736-659828bb3947	68027171-3c57-48ce-b796-f96345b1c177	.	ZNF326	NM_182976	exon12	c.1563delA	p.V521fs	.	.	101.0	27.0	73.0	0.0	.	60	.	0.267327	0	none	.	.	PASS	Atlas-Indel,Pindel
SSC5D	284297	hgsc.bcm.edu	hg19	19	56011955	56011955	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-SX-A7SP-01A-11D-A34Z-10	TCGA-SX-A7SP-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6abb591-8bba-4022-b736-659828bb3947	68027171-3c57-48ce-b796-f96345b1c177	.	SSC5D	NM_001195267	exon11	c.2400delC	p.N800fs	.	.	73.0	21.0	61.0	0.0	.	65	.	0.287671	0	none	.	.	PASS	Atlas-Indel,Pindel
MYH15	22989	hgsc.bcm.edu	hg19	3	108229380	108229399	+	Frame_Shift_Del	DEL	TTATTAAAGCAATCCACCAA	TTATTAAAGCAATCCACCAA	-	novel		TCGA-SX-A7SP-01A-11D-A34Z-10	TCGA-SX-A7SP-10A-01D-A34Z-10	TTATTAAAGCAATCCACCAA	TTATTAAAGCAATCCACCAA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6abb591-8bba-4022-b736-659828bb3947	68027171-3c57-48ce-b796-f96345b1c177	.	MYH15	NM_014981	exon2	c.40_59del	p.14_20del	.	.	196.0	15.0	137.0	0.0	.	223	.	0.0765306	0	none	.	.	PASS	Atlas-INDEL
CASC3	22794	hgsc.bcm.edu	hg19	17	38318253	38318254	+	Splice_Site	INS	-	-	G	novel		TCGA-SX-A7SP-01A-11D-A34Z-10	TCGA-SX-A7SP-10A-01D-A34Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6abb591-8bba-4022-b736-659828bb3947	68027171-3c57-48ce-b796-f96345b1c177	.	CASC3	NM_007359	exon5	c.457-2->G	.	.	.	75.0	24.0	61.0	0.0	.	39	.	0.32	0	none	.	.	PASS	Atlas-Indel,Pindel
AK4	205	hgsc.bcm.edu	hg19	1	65690462	65690463	+	In_Frame_Ins	INS	-	-	TAG	novel		TCGA-SX-A7SP-01A-11D-A34Z-10	TCGA-SX-A7SP-10A-01D-A34Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6abb591-8bba-4022-b736-659828bb3947	68027171-3c57-48ce-b796-f96345b1c177	.	AK4	NM_203464	exon5	c.466_467insTAG	p.L156delinsLV	.	.	153.0	40.0	98.0	0.0	.	22	.	0.261438	0	none	.	.	PASS	Atlas-Indel,Pindel
RPL37A	6168	hgsc.bcm.edu	hg19	2	217364702	217364709	+	Frame_Shift_Del	DEL	TGGCACTG	TGGCACTG	-	novel		TCGA-SX-A7SP-01A-11D-A34Z-10	TCGA-SX-A7SP-10A-01D-A34Z-10	TGGCACTG	TGGCACTG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6abb591-8bba-4022-b736-659828bb3947	68027171-3c57-48ce-b796-f96345b1c177	.	RPL37A	NM_000998	exon3	c.162_169del	p.54_57del	.	.	104.0	21.0	101.0	0.0	.	9	.	0.201923	0	none	.	.	PASS	Atlas-Indel,Pindel
BANK1	55024	hgsc.bcm.edu	hg19	4	102965067	102965076	+	Splice_Site	DEL	ACTAACACTA	ACTAACACTA	-	novel		TCGA-SX-A7SP-01A-11D-A34Z-10	TCGA-SX-A7SP-10A-01D-A34Z-10	ACTAACACTA	ACTAACACTA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6abb591-8bba-4022-b736-659828bb3947	68027171-3c57-48ce-b796-f96345b1c177	.	BANK1	.	.	.	.	.	.	78.0	11.0	62.0	0.0	.	95	.	0.141026	0	none	.	.	PASS	Atlas-Indel,Pindel
PSMA6	5687	hgsc.bcm.edu	hg19	14	35783593	35783596	+	Frame_Shift_Del	DEL	TCTA	TCTA	-	novel		TCGA-SX-A7SP-01A-11D-A34Z-10	TCGA-SX-A7SP-10A-01D-A34Z-10	TCTA	TCTA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6abb591-8bba-4022-b736-659828bb3947	68027171-3c57-48ce-b796-f96345b1c177	.	PSMA6	NM_002791	exon6	c.614_617del	p.205_206del	.	.	377.0	102.0	316.0	0.0	.	18	.	0.270557	0	none	.	.	PASS	Atlas-Indel,Pindel
MPI	4351	hgsc.bcm.edu	hg19	15	75183852	75183852	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-SX-A7SP-01A-11D-A34Z-10	TCGA-SX-A7SP-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6abb591-8bba-4022-b736-659828bb3947	68027171-3c57-48ce-b796-f96345b1c177	.	MPI	NM_002435	exon3	c.276delC	p.G92fs	.	.	67.0	23.0	68.0	0.0	.	32	.	0.343284	0	none	.	.	PASS	Atlas-Indel,Pindel
PPP2R3A	5523	hgsc.bcm.edu	hg19	3	135797207	135797208	+	Splice_Site	DEL	AG	AG	-	novel		TCGA-SX-A7SP-01A-11D-A34Z-10	TCGA-SX-A7SP-10A-01D-A34Z-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6abb591-8bba-4022-b736-659828bb3947	68027171-3c57-48ce-b796-f96345b1c177	.	PPP2R3A	.	.	.	.	.	.	712.0	277.0	534.0	0.0	.	114	.	0.389045	0	none	.	.	PASS	Atlas-Indel,Pindel
STRAP	11171	hgsc.bcm.edu	hg19	12	16043580	16043580	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-SX-A7SP-01A-11D-A34Z-10	TCGA-SX-A7SP-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6abb591-8bba-4022-b736-659828bb3947	68027171-3c57-48ce-b796-f96345b1c177	.	STRAP	NM_007178	exon4	c.379delT	p.Y127fs	.	.	171.0	57.0	187.0	0.0	.	33	.	0.333333	0	none	.	.	PASS	Atlas-Indel,Pindel
CEP170	9859	hgsc.bcm.edu	hg19	1	243319673	243319675	+	In_Frame_Del	DEL	TGT	TGT	-	novel		TCGA-SX-A7SP-01A-11D-A34Z-10	TCGA-SX-A7SP-10A-01D-A34Z-10	TGT	TGT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6abb591-8bba-4022-b736-659828bb3947	68027171-3c57-48ce-b796-f96345b1c177	.	CEP170	NM_014812	exon14	c.3760_3762del	p.1254_1254del	.	.	119.0	37.0	105.0	0.0	.	153	.	0.310924	0	none	.	.	PASS	Atlas-Indel,Pindel