Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq TVarRat NVarRat dbSNP_Strength dbSNP_AF dbSNP_PopFreq Confidence Algorithm UBIAD1 29914 hgsc.bcm.edu hg19 1 11345827 11345827 + Missense_Mutation SNP T T C novel TCGA-PJ-A8JU-01A-11D-A35Z-10 TCGA-PJ-A8JU-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 13034367-8ee9-4a37-b910-2798632c44fe d0b1cf4a-51b3-49a9-9a97-c719fa400826 UBIAD1,caecum,carcinoma,0,1 UBIAD1 NM_013319 exon2 c.T656C p.I219T ATGCCATCCCCCT . 107.0 39.0 145.0 0.0 . 27 . . . none . . PASS Atlas-SNP COL16A1 1307 hgsc.bcm.edu hg19 1 32151315 32151315 + Silent SNP A A G novel TCGA-PJ-A8JU-01A-11D-A35Z-10 TCGA-PJ-A8JU-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 13034367-8ee9-4a37-b910-2798632c44fe d0b1cf4a-51b3-49a9-9a97-c719fa400826 . COL16A1 NM_001856 exon29 c.T1941C p.R647R CACCACACGGACA . 270.0 87.0 292.0 0.0 . 137 . . . none . . PASS Atlas-SNP SH3D21 79729 hgsc.bcm.edu hg19 1 36773209 36773209 + Splice_Site SNP G G A novel TCGA-PJ-A8JU-01A-11D-A35Z-10 TCGA-PJ-A8JU-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 13034367-8ee9-4a37-b910-2798632c44fe d0b1cf4a-51b3-49a9-9a97-c719fa400826 . SH3D21 NM_001162530 exon5 c.436+1G>A . CCCCAAGTGAGAC . 126.0 37.0 144.0 0.0 . 73 . . . none . . PASS Atlas-SNP BSND 7809 hgsc.bcm.edu hg19 1 55472846 55472846 + Missense_Mutation SNP G G T novel TCGA-PJ-A8JU-01A-11D-A35Z-10 TCGA-PJ-A8JU-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 13034367-8ee9-4a37-b910-2798632c44fe d0b1cf4a-51b3-49a9-9a97-c719fa400826 . BSND NM_057176 exon3 c.G449T p.G150V AAGGTGGCCCTGG . 121.0 40.0 162.0 0.0 . 36 . . . none . . PASS Atlas-SNP PYGO2 90780 hgsc.bcm.edu hg19 1 154931749 154931749 + Missense_Mutation SNP G G A novel TCGA-PJ-A8JU-01A-11D-A35Z-10 TCGA-PJ-A8JU-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 13034367-8ee9-4a37-b910-2798632c44fe d0b1cf4a-51b3-49a9-9a97-c719fa400826 PYGO2,NS,carcinoma,0,1 PYGO2 NM_138300 exon3 c.C727T p.P243S GAAAGGGACTTGT . 148.0 38.0 139.0 0.0 . 32 . . . none . . PASS Atlas-SNP ARHGAP30 257106 hgsc.bcm.edu hg19 1 161018086 161018086 + Missense_Mutation SNP A A C novel TCGA-PJ-A8JU-01A-11D-A35Z-10 TCGA-PJ-A8JU-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 13034367-8ee9-4a37-b910-2798632c44fe d0b1cf4a-51b3-49a9-9a97-c719fa400826 . ARHGAP30 NM_001025598 exon12 c.T2725G p.C909G ATAGACAGCCGTC . 47.0 17.0 65.0 0.0 . 105 . . . none . . PASS Atlas-SNP MTR 4548 hgsc.bcm.edu hg19 1 236979823 236979823 + Silent SNP G G A novel TCGA-PJ-A8JU-01A-11D-A35Z-10 TCGA-PJ-A8JU-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 13034367-8ee9-4a37-b910-2798632c44fe d0b1cf4a-51b3-49a9-9a97-c719fa400826 . MTR NM_000254 exon8 c.G744A p.V248V CAGCGTGTCTCAT . 71.0 19.0 85.0 0.0 . 127 . . . none . . PASS Atlas-SNP SMC6 79677 hgsc.bcm.edu hg19 2 17865003 17865003 + Nonsense_Mutation SNP A A C novel TCGA-PJ-A8JU-01A-11D-A35Z-10 TCGA-PJ-A8JU-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 13034367-8ee9-4a37-b910-2798632c44fe d0b1cf4a-51b3-49a9-9a97-c719fa400826 . SMC6 NM_001142286 exon24 c.T2706G p.Y902X ATCAAGATAGGTC . 234.0 76.0 289.0 0.0 . 102 . . . none . . PASS Atlas-SNP NCOA1 8648 hgsc.bcm.edu hg19 2 24930361 24930361 + Silent SNP T T G novel TCGA-PJ-A8JU-01A-11D-A35Z-10 TCGA-PJ-A8JU-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 13034367-8ee9-4a37-b910-2798632c44fe d0b1cf4a-51b3-49a9-9a97-c719fa400826 . NCOA1 NM_147223 exon11 c.T2022G p.G674G AGGAGGTTCTTGT . 108.0 35.0 145.0 0.0 . 210 . . . none . . PASS Atlas-SNP NAT8 9027 hgsc.bcm.edu hg19 2 73868395 73868395 + Missense_Mutation SNP T T C novel TCGA-PJ-A8JU-01A-11D-A35Z-10 TCGA-PJ-A8JU-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 13034367-8ee9-4a37-b910-2798632c44fe d0b1cf4a-51b3-49a9-9a97-c719fa400826 . NAT8 NM_003960 exon2 c.A361G p.M121V CTACCATGCCCAC . 105.0 38.0 101.0 0.0 . 26 . . . none . . PASS Atlas-SNP ACTG2 72 hgsc.bcm.edu hg19 2 74129580 74129580 + Missense_Mutation SNP C C T novel TCGA-PJ-A8JU-01A-11D-A35Z-10 TCGA-PJ-A8JU-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 13034367-8ee9-4a37-b910-2798632c44fe d0b1cf4a-51b3-49a9-9a97-c719fa400826 . ACTG2 NM_001615 exon3 c.C220T p.H74Y ATTGAACACGGCA . 76.0 45.0 92.0 0.0 . 37 . . . none . . PASS Atlas-SNP RFX8 731220 hgsc.bcm.edu hg19 2 102029382 102029382 + Missense_Mutation SNP A A G novel TCGA-PJ-A8JU-01A-11D-A35Z-10 TCGA-PJ-A8JU-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 13034367-8ee9-4a37-b910-2798632c44fe d0b1cf4a-51b3-49a9-9a97-c719fa400826 . RFX8 NM_001145664 exon8 c.T713C p.M238T CATTTCATCTCTG . 62.0 23.0 62.0 0.0 . 16 . . . none . . PASS Atlas-SNP FMNL2 114793 hgsc.bcm.edu hg19 2 153415322 153415322 + Missense_Mutation SNP C C A novel TCGA-PJ-A8JU-01A-11D-A35Z-10 TCGA-PJ-A8JU-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 13034367-8ee9-4a37-b910-2798632c44fe d0b1cf4a-51b3-49a9-9a97-c719fa400826 . FMNL2 NM_052905 exon5 c.C428A p.A143E CATTTGCACAGTA . 83.0 24.0 104.0 0.0 . 75 . . . none . . PASS Atlas-SNP TTN 7273 hgsc.bcm.edu hg19 2 179421832 179421832 + Missense_Mutation SNP T T C novel TCGA-PJ-A8JU-01A-11D-A35Z-10 TCGA-PJ-A8JU-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 13034367-8ee9-4a37-b910-2798632c44fe d0b1cf4a-51b3-49a9-9a97-c719fa400826 . TTN NM_001267550 exon330 c.A88049G p.N29350S ACAGAGTTCTTTG . 47.0 18.0 99.0 0.0 . 18412 . . . none . . PASS Atlas-SNP GLS 2744 hgsc.bcm.edu hg19 2 191795233 191795233 + Missense_Mutation SNP T T C novel TCGA-PJ-A8JU-01A-11D-A35Z-10 TCGA-PJ-A8JU-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 13034367-8ee9-4a37-b910-2798632c44fe d0b1cf4a-51b3-49a9-9a97-c719fa400826 . GLS NM_014905 exon13 c.T1496C p.M499T GTATGATGTGCTG . 90.0 33.0 123.0 0.0 . 47 . . . none . . PASS Atlas-SNP PTPRN 5798 hgsc.bcm.edu hg19 2 220173977 220173977 + Silent SNP G G A novel TCGA-PJ-A8JU-01A-11D-A35Z-10 TCGA-PJ-A8JU-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 13034367-8ee9-4a37-b910-2798632c44fe d0b1cf4a-51b3-49a9-9a97-c719fa400826 . PTPRN NM_002846 exon1 c.C78T p.S26S GCGGCTGCTCAGC . 95.0 42.0 94.0 0.0 . 138 . . . none . . PASS Atlas-SNP SERPINE2 5270 hgsc.bcm.edu hg19 2 224856616 224856616 + Missense_Mutation SNP A A G novel TCGA-PJ-A8JU-01A-11D-A35Z-10 TCGA-PJ-A8JU-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 13034367-8ee9-4a37-b910-2798632c44fe d0b1cf4a-51b3-49a9-9a97-c719fa400826 . SERPINE2 NM_001136530 exon4 c.T625C p.F209L GTTGGAACCGTGA . 105.0 32.0 117.0 0.0 . 103 . . . none . . PASS Atlas-SNP KIF1A 547 hgsc.bcm.edu hg19 2 241696843 241696843 + Missense_Mutation SNP C C A novel TCGA-PJ-A8JU-01A-11D-A35Z-10 TCGA-PJ-A8JU-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 13034367-8ee9-4a37-b910-2798632c44fe d0b1cf4a-51b3-49a9-9a97-c719fa400826 . KIF1A NM_001244008 exon27 c.G2751T p.E917D CTCATCCTCCTCC . 81.0 14.0 70.0 0.0 . 152 . . . none . . PASS Atlas-SNP KLHL40 131377 hgsc.bcm.edu hg19 3 42730387 42730387 + Missense_Mutation SNP A A G novel TCGA-PJ-A8JU-01A-11D-A35Z-10 TCGA-PJ-A8JU-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 13034367-8ee9-4a37-b910-2798632c44fe d0b1cf4a-51b3-49a9-9a97-c719fa400826 . . NM_152393 exon4 c.A1448G p.Y483C GCGTCTATGACCC . 129.0 25.0 135.0 0.0 . . . . . none . . PASS Atlas-SNP FAM212A 389119 hgsc.bcm.edu hg19 3 49841865 49841865 + Silent SNP C C T novel TCGA-PJ-A8JU-01A-11D-A35Z-10 TCGA-PJ-A8JU-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 13034367-8ee9-4a37-b910-2798632c44fe d0b1cf4a-51b3-49a9-9a97-c719fa400826 . . NM_203370 exon2 c.C309T p.G103G GTCAGGCAGCACA . 79.0 17.0 61.0 0.0 . . . . . none . . PASS Atlas-SNP TKT 7086 hgsc.bcm.edu hg19 3 53264594 53264594 + Missense_Mutation SNP C C T novel TCGA-PJ-A8JU-01A-11D-A35Z-10 TCGA-PJ-A8JU-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 13034367-8ee9-4a37-b910-2798632c44fe d0b1cf4a-51b3-49a9-9a97-c719fa400826 . TKT NM_001258028 exon9 c.G1010A p.G337D GCATGGCCCAGCT . 118.0 67.0 98.0 0.0 . 38 . . . none . . PASS Atlas-SNP GOLGB1 2804 hgsc.bcm.edu hg19 3 121417110 121417110 + Missense_Mutation SNP G G C novel TCGA-PJ-A8JU-01A-11D-A35Z-10 TCGA-PJ-A8JU-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 13034367-8ee9-4a37-b910-2798632c44fe d0b1cf4a-51b3-49a9-9a97-c719fa400826 . GOLGB1 NM_001256486 exon13 c.C2260G p.L754V AGAGAAGCTGGTC . 95.0 26.0 82.0 0.0 . 319 . . . none . . PASS Atlas-SNP STAG1 10274 hgsc.bcm.edu hg19 3 136096520 136096520 + Silent SNP A A G novel TCGA-PJ-A8JU-01A-11D-A35Z-10 TCGA-PJ-A8JU-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 13034367-8ee9-4a37-b910-2798632c44fe d0b1cf4a-51b3-49a9-9a97-c719fa400826 . STAG1 NM_005862 exon23 c.T2352C p.N784N TGGAGTATTAACA . 63.0 27.0 55.0 0.0 . 135 . . . none . . PASS Atlas-SNP PARL 55486 hgsc.bcm.edu hg19 3 183560125 183560125 + Missense_Mutation SNP G G C novel TCGA-PJ-A8JU-01A-11D-A35Z-10 TCGA-PJ-A8JU-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 13034367-8ee9-4a37-b910-2798632c44fe d0b1cf4a-51b3-49a9-9a97-c719fa400826 . PARL NM_018622 exon6 c.C718G p.L240V GACCCAGAATGTT . 80.0 20.0 72.0 0.0 . 32 . . . none . . PASS Atlas-SNP ATOH1 474 hgsc.bcm.edu hg19 4 94750807 94750807 + Missense_Mutation SNP T T C novel TCGA-PJ-A8JU-01A-11D-A35Z-10 TCGA-PJ-A8JU-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 13034367-8ee9-4a37-b910-2798632c44fe d0b1cf4a-51b3-49a9-9a97-c719fa400826 . ATOH1 NM_005172 exon1 c.T730C p.Y244H GCCTCCTATGAAG . 105.0 43.0 136.0 0.0 . 40 . . . none . . PASS Atlas-SNP ANK2 287 hgsc.bcm.edu hg19 4 114278777 114278777 + Missense_Mutation SNP T T A novel TCGA-PJ-A8JU-01A-11D-A35Z-10 TCGA-PJ-A8JU-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 13034367-8ee9-4a37-b910-2798632c44fe d0b1cf4a-51b3-49a9-9a97-c719fa400826 . ANK2 NM_001148 exon38 c.T9003A p.S3001R GGAAAGTACCTTG . 144.0 42.0 222.0 0.0 . 576 . . . none . . PASS Atlas-SNP GPR98 84059 hgsc.bcm.edu hg19 5 90446037 90446037 + Missense_Mutation SNP A A T novel TCGA-PJ-A8JU-01A-11D-A35Z-10 TCGA-PJ-A8JU-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 13034367-8ee9-4a37-b910-2798632c44fe d0b1cf4a-51b3-49a9-9a97-c719fa400826 . GPR98 NM_032119 exon88 c.A18623T p.E6208V TGGAGGAGGTGTC . 85.0 25.0 126.0 0.0 . 605 . . . none . . PASS Atlas-SNP FSTL4 23105 hgsc.bcm.edu hg19 5 132534854 132534854 + Missense_Mutation SNP T T A novel TCGA-PJ-A8JU-01A-11D-A35Z-10 TCGA-PJ-A8JU-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 13034367-8ee9-4a37-b910-2798632c44fe d0b1cf4a-51b3-49a9-9a97-c719fa400826 . FSTL4 NM_015082 exon16 c.A2462T p.N821I AGCGTGTTTTGTC . 70.0 26.0 70.0 0.0 . 74 . . . none . . PASS Atlas-SNP PITX1 5307 hgsc.bcm.edu hg19 5 134367076 134367076 + Missense_Mutation SNP T T C novel TCGA-PJ-A8JU-01A-11D-A35Z-10 TCGA-PJ-A8JU-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 13034367-8ee9-4a37-b910-2798632c44fe d0b1cf4a-51b3-49a9-9a97-c719fa400826 . PITX1 NM_002653 exon2 c.A292G p.S98G GCTGGCTTGTGAA . 91.0 25.0 127.0 0.0 . 31 . . . none . . PASS Atlas-SNP DPYSL3 1809 hgsc.bcm.edu hg19 5 146833138 146833138 + Missense_Mutation SNP C C A novel TCGA-PJ-A8JU-01A-11D-A35Z-10 TCGA-PJ-A8JU-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 13034367-8ee9-4a37-b910-2798632c44fe d0b1cf4a-51b3-49a9-9a97-c719fa400826 . DPYSL3 NM_001387 exon1 c.G13T p.G5C TCTTGCCTTGGTA . 101.0 9.0 95.0 0.0 . 58 . . . none . . PASS Atlas-SNP CLINT1 9685 hgsc.bcm.edu hg19 5 157214655 157214655 + Silent SNP T T C novel TCGA-PJ-A8JU-01A-11D-A35Z-10 TCGA-PJ-A8JU-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 13034367-8ee9-4a37-b910-2798632c44fe d0b1cf4a-51b3-49a9-9a97-c719fa400826 . CLINT1 NM_001195555 exon12 c.A1931G p.X644X ATCTCTTATTTGC . 65.0 7.0 67.0 0.0 . 86 . . . none . . PASS Atlas-SNP PHIP 55023 hgsc.bcm.edu hg19 6 79655791 79655791 + Silent SNP C C T novel TCGA-PJ-A8JU-01A-11D-A35Z-10 TCGA-PJ-A8JU-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 13034367-8ee9-4a37-b910-2798632c44fe d0b1cf4a-51b3-49a9-9a97-c719fa400826 . PHIP NM_017934 exon38 c.G4557A p.E1519E TGGTTGCTCAGTG . 109.0 38.0 127.0 0.0 . 177 . . . none . . PASS Atlas-SNP MUC17 140453 hgsc.bcm.edu hg19 7 100679990 100679990 + Missense_Mutation SNP G G A novel TCGA-PJ-A8JU-01A-11D-A35Z-10 TCGA-PJ-A8JU-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 13034367-8ee9-4a37-b910-2798632c44fe d0b1cf4a-51b3-49a9-9a97-c719fa400826 . MUC17 NM_001040105 exon3 c.G5293A p.E1765K AGTTCTGAGGCTA . 94.0 31.0 76.0 0.0 . 804 . . . none . . PASS Atlas-SNP CUX1 1523 hgsc.bcm.edu hg19 7 101891788 101891788 + Silent SNP G G A novel TCGA-PJ-A8JU-01A-11D-A35Z-10 TCGA-PJ-A8JU-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 13034367-8ee9-4a37-b910-2798632c44fe d0b1cf4a-51b3-49a9-9a97-c719fa400826 . CUX1 NM_001202543 exon24 c.G4017A p.R1339R CGGCCGGGCGGCG . 36.0 18.0 41.0 0.0 . 253 . . . none . . PASS Atlas-SNP ATP6V1B2 526 hgsc.bcm.edu hg19 8 20069635 20069635 + Missense_Mutation SNP T T A novel TCGA-PJ-A8JU-01A-11D-A35Z-10 TCGA-PJ-A8JU-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 13034367-8ee9-4a37-b910-2798632c44fe d0b1cf4a-51b3-49a9-9a97-c719fa400826 . ATP6V1B2 NM_001693 exon8 c.T728A p.F243Y CCCGGTTCTTCAA . 88.0 36.0 97.0 0.0 . 34 . . . none . . PASS Atlas-SNP MYBL1 4603 hgsc.bcm.edu hg19 8 67514696 67514696 + Missense_Mutation SNP C C T novel TCGA-PJ-A8JU-01A-11D-A35Z-10 TCGA-PJ-A8JU-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 13034367-8ee9-4a37-b910-2798632c44fe d0b1cf4a-51b3-49a9-9a97-c719fa400826 . MYBL1 NM_001080416 exon2 c.G83A p.G28E TTCAGTCCTTTTT . 78.0 27.0 96.0 0.0 . 73 . . . none . . PASS Atlas-SNP NCOA2 10499 hgsc.bcm.edu hg19 8 71056986 71056986 + Silent SNP A A G novel TCGA-PJ-A8JU-01A-11D-A35Z-10 TCGA-PJ-A8JU-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 13034367-8ee9-4a37-b910-2798632c44fe d0b1cf4a-51b3-49a9-9a97-c719fa400826 . NCOA2 NM_006540 exon13 c.T2703C p.P901P TGGGAAAGGTCCA . 155.0 45.0 181.0 0.0 . 147 . . . none . . PASS Atlas-SNP TP53INP1 94241 hgsc.bcm.edu hg19 8 95952262 95952262 + Missense_Mutation SNP G G T novel TCGA-PJ-A8JU-01A-11D-A35Z-10 TCGA-PJ-A8JU-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 13034367-8ee9-4a37-b910-2798632c44fe d0b1cf4a-51b3-49a9-9a97-c719fa400826 . TP53INP1 NM_001135733 exon3 c.C299A p.P100Q GGGGGTGGGGTGA . 133.0 51.0 153.0 0.0 . 22 . . . none . . PASS Atlas-SNP PABPC1 26986 hgsc.bcm.edu hg19 8 101717893 101717893 + Silent SNP A A G novel TCGA-PJ-A8JU-01A-11D-A35Z-10 TCGA-PJ-A8JU-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 13034367-8ee9-4a37-b910-2798632c44fe d0b1cf4a-51b3-49a9-9a97-c719fa400826 . PABPC1 NM_002568 exon12 c.T1611C p.V537V TACATGAACAGCA . 252.0 86.0 244.0 0.0 . 76 . . . none . . PASS Atlas-SNP GNAQ 2776 hgsc.bcm.edu hg19 9 80537112 80537112 + Missense_Mutation SNP T T A novel TCGA-PJ-A8JU-01A-11D-A35Z-10 TCGA-PJ-A8JU-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 13034367-8ee9-4a37-b910-2798632c44fe d0b1cf4a-51b3-49a9-9a97-c719fa400826 GNAQ,NS,carcinoma,0,2 GNAQ NM_002072 exon2 c.A286T p.T96S TGAGTGTGTCCAT . 59.0 3.0 34.0 1.0 . 384 . . . none . . PASS Atlas-SNP OR13C2 392376 hgsc.bcm.edu hg19 9 107367111 107367111 + Missense_Mutation SNP C C A rs75116810 TCGA-PJ-A8JU-01A-11D-A35Z-10 TCGA-PJ-A8JU-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 13034367-8ee9-4a37-b910-2798632c44fe d0b1cf4a-51b3-49a9-9a97-c719fa400826 . OR13C2 NM_001004481 exon1 c.G798T p.E266D AAGTGTCTCTTTA . 109.0 44.0 148.0 0.0 . 46 . . . weak . . PASS Atlas-SNP CDK5RAP2 55755 hgsc.bcm.edu hg19 9 123287316 123287316 + Missense_Mutation SNP G G A novel TCGA-PJ-A8JU-01A-11D-A35Z-10 TCGA-PJ-A8JU-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 13034367-8ee9-4a37-b910-2798632c44fe d0b1cf4a-51b3-49a9-9a97-c719fa400826 . CDK5RAP2 NM_018249 exon11 c.C1040T p.A347V GCAAAGGCAGCAC . 83.0 30.0 102.0 0.0 . 157 . . . none . . PASS Atlas-SNP STOX1 219736 hgsc.bcm.edu hg19 10 70645490 70645490 + Silent SNP C C A novel TCGA-PJ-A8JU-01A-11D-A35Z-10 TCGA-PJ-A8JU-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 13034367-8ee9-4a37-b910-2798632c44fe d0b1cf4a-51b3-49a9-9a97-c719fa400826 . STOX1 NM_152709 exon3 c.C1938A p.A646A AGGTGCCTCCTTT . 64.0 46.0 78.0 0.0 . 75 . . . none . . PASS Atlas-SNP FUT11 170384 hgsc.bcm.edu hg19 10 75535419 75535419 + Silent SNP C C A novel TCGA-PJ-A8JU-01A-11D-A35Z-10 TCGA-PJ-A8JU-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 13034367-8ee9-4a37-b910-2798632c44fe d0b1cf4a-51b3-49a9-9a97-c719fa400826 . FUT11 NM_173540 exon3 c.C1455A p.I485I TGAAATCTTCATG . 80.0 51.0 116.0 0.0 . 30 . . . none . . PASS Atlas-SNP PTEN 5728 hgsc.bcm.edu hg19 10 89720837 89720837 + Nonsense_Mutation SNP A A T novel TCGA-PJ-A8JU-01A-11D-A35Z-10 TCGA-PJ-A8JU-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 13034367-8ee9-4a37-b910-2798632c44fe d0b1cf4a-51b3-49a9-9a97-c719fa400826 . PTEN NM_000314 exon8 c.A988T p.K330X GCAAATAAAGACA . 271.0 186.0 398.0 1.0 . 3652 . . . none . . PASS Atlas-SNP AMBRA1 55626 hgsc.bcm.edu hg19 11 46563838 46563838 + Missense_Mutation SNP A A G novel TCGA-PJ-A8JU-01A-11D-A35Z-10 TCGA-PJ-A8JU-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 13034367-8ee9-4a37-b910-2798632c44fe d0b1cf4a-51b3-49a9-9a97-c719fa400826 . AMBRA1 NM_001267783 exon8 c.T1459C p.F487L TGTTGAAGGTCAG . 40.0 15.0 54.0 0.0 . 201 . . . none . . PASS Atlas-SNP AMBRA1 55626 hgsc.bcm.edu hg19 11 46569397 46569397 + Missense_Mutation SNP G G T novel TCGA-PJ-A8JU-01A-11D-A35Z-10 TCGA-PJ-A8JU-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 13034367-8ee9-4a37-b910-2798632c44fe d0b1cf4a-51b3-49a9-9a97-c719fa400826 . AMBRA1 NM_001267783 exon3 c.C164A p.S55Y AAGGTAGAGCGTG . 53.0 16.0 65.0 0.0 . 201 . . . none . . PASS Atlas-SNP NXF1 10482 hgsc.bcm.edu hg19 11 62561809 62561809 + Missense_Mutation SNP G G A novel TCGA-PJ-A8JU-01A-11D-A35Z-10 TCGA-PJ-A8JU-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 13034367-8ee9-4a37-b910-2798632c44fe d0b1cf4a-51b3-49a9-9a97-c719fa400826 . NXF1 NM_006362 exon19 c.C1681T p.P561S GGGTGGGCACCGG . 127.0 6.0 123.0 0.0 . 67 . . . none . . PASS Atlas-SNP PCF11 51585 hgsc.bcm.edu hg19 11 82877708 82877708 + Missense_Mutation SNP G G A novel TCGA-PJ-A8JU-01A-11D-A35Z-10 TCGA-PJ-A8JU-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 13034367-8ee9-4a37-b910-2798632c44fe d0b1cf4a-51b3-49a9-9a97-c719fa400826 . PCF11 NM_015885 exon5 c.G1769A p.S590N GGCAAAGTTCCAA . 277.0 83.0 291.0 0.0 . 220 . . . none . . PASS Atlas-SNP CREBZF 58487 hgsc.bcm.edu hg19 11 85375427 85375427 + Missense_Mutation SNP T T C novel TCGA-PJ-A8JU-01A-11D-A35Z-10 TCGA-PJ-A8JU-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 13034367-8ee9-4a37-b910-2798632c44fe d0b1cf4a-51b3-49a9-9a97-c719fa400826 . CREBZF NM_001039618 exon1 c.A493G p.R165G ACAGCCTTTGCAG . 67.0 20.0 89.0 0.0 . 26 . . . none . . PASS Atlas-SNP DDX10 1662 hgsc.bcm.edu hg19 11 108562631 108562631 + Missense_Mutation SNP G G A novel TCGA-PJ-A8JU-01A-11D-A35Z-10 TCGA-PJ-A8JU-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 13034367-8ee9-4a37-b910-2798632c44fe d0b1cf4a-51b3-49a9-9a97-c719fa400826 . DDX10 NM_004398 exon8 c.G1004A p.R335Q TTTGCCGGCTACG . 100.0 29.0 104.0 0.0 . 70 . . . none . . PASS Atlas-SNP ARHGAP9 64333 hgsc.bcm.edu hg19 12 57872506 57872506 + Missense_Mutation SNP C C G rs368912616 alternate_allele TCGA-PJ-A8JU-01A-11D-A35Z-10 TCGA-PJ-A8JU-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 13034367-8ee9-4a37-b910-2798632c44fe d0b1cf4a-51b3-49a9-9a97-c719fa400826 . ARHGAP9 NM_001080157 exon2 c.G351C p.L117F CTGAGACAACTCC . 53.0 32.0 59.0 0.0 . 79 . . . alt . . PASS Atlas-SNP TRHDE 29953 hgsc.bcm.edu hg19 12 72962372 72962372 + Silent SNP T T C novel TCGA-PJ-A8JU-01A-11D-A35Z-10 TCGA-PJ-A8JU-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 13034367-8ee9-4a37-b910-2798632c44fe d0b1cf4a-51b3-49a9-9a97-c719fa400826 . TRHDE NM_013381 exon10 c.T1932C p.T644T ATTAACTATTGTG . 133.0 70.0 108.0 0.0 . 194 . . . none . . PASS Atlas-SNP CMA1 1215 hgsc.bcm.edu hg19 14 24976587 24976587 + Missense_Mutation SNP G G C novel TCGA-PJ-A8JU-01A-11D-A35Z-10 TCGA-PJ-A8JU-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 13034367-8ee9-4a37-b910-2798632c44fe d0b1cf4a-51b3-49a9-9a97-c719fa400826 . CMA1 NM_001836 exon2 c.C184G p.L62V CCGTCAGCACAAA . 94.0 24.0 146.0 0.0 . 21 . . . none . . PASS Atlas-SNP CMA1 1215 hgsc.bcm.edu hg19 14 24976588 24976588 + Silent SNP C C A novel TCGA-PJ-A8JU-01A-11D-A35Z-10 TCGA-PJ-A8JU-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 13034367-8ee9-4a37-b910-2798632c44fe d0b1cf4a-51b3-49a9-9a97-c719fa400826 . CMA1 NM_001836 exon2 c.G183T p.V61V CGTCAGCACAAAG . 98.0 26.0 148.0 0.0 . 21 . . . none . . PASS Atlas-SNP ARG2 384 hgsc.bcm.edu hg19 14 68113700 68113700 + Missense_Mutation SNP T T A novel TCGA-PJ-A8JU-01A-11D-A35Z-10 TCGA-PJ-A8JU-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 13034367-8ee9-4a37-b910-2798632c44fe d0b1cf4a-51b3-49a9-9a97-c719fa400826 . ARG2 NM_001172 exon6 c.T680A p.I227N TTGGTATCCAGAA . 59.0 25.0 60.0 0.0 . 20 . . . none . . PASS Atlas-SNP SNURF 8926 hgsc.bcm.edu hg19 15 25207341 25207341 + Nonsense_Mutation SNP C C A novel TCGA-PJ-A8JU-01A-11D-A35Z-10 TCGA-PJ-A8JU-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 13034367-8ee9-4a37-b910-2798632c44fe d0b1cf4a-51b3-49a9-9a97-c719fa400826 . SNURF NM_005678 exon2 c.C95A p.S32X CTGCCTCACTGAG . 94.0 36.0 131.0 0.0 . 17 . . . none . . PASS Atlas-SNP C15orf62 643338 hgsc.bcm.edu hg19 15 41062848 41062848 + Missense_Mutation SNP T T C novel TCGA-PJ-A8JU-01A-11D-A35Z-10 TCGA-PJ-A8JU-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 13034367-8ee9-4a37-b910-2798632c44fe d0b1cf4a-51b3-49a9-9a97-c719fa400826 . C15orf62 NM_001130448 exon1 c.T155C p.I52T AAGTCATCCGGGA . 45.0 15.0 57.0 0.0 . 3 . . . none . . PASS Atlas-SNP GLCE 26035 hgsc.bcm.edu hg19 15 69548297 69548297 + Missense_Mutation SNP G G A novel TCGA-PJ-A8JU-01A-11D-A35Z-10 TCGA-PJ-A8JU-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 13034367-8ee9-4a37-b910-2798632c44fe d0b1cf4a-51b3-49a9-9a97-c719fa400826 . GLCE NM_015554 exon3 c.G152A p.G51E TGGATGGGTTTGA . 155.0 49.0 178.0 0.0 . 48 . . . none . . PASS Atlas-SNP CYP1A2 1544 hgsc.bcm.edu hg19 15 75042653 75042653 + Missense_Mutation SNP G G A novel TCGA-PJ-A8JU-01A-11D-A35Z-10 TCGA-PJ-A8JU-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 13034367-8ee9-4a37-b910-2798632c44fe d0b1cf4a-51b3-49a9-9a97-c719fa400826 . CYP1A2 NM_000761 exon2 c.G574A p.V192M AATCAGGTGGTGG . 51.0 24.0 68.0 0.0 . 70 . . . none . . PASS Atlas-SNP GOLGA6C 653641 hgsc.bcm.edu hg19 15 75562489 75562489 + Silent SNP C C T novel TCGA-PJ-A8JU-01A-11D-A35Z-10 TCGA-PJ-A8JU-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 13034367-8ee9-4a37-b910-2798632c44fe d0b1cf4a-51b3-49a9-9a97-c719fa400826 . GOLGA6C NM_001164404 exon18 c.C2031T p.N677N TGACAACCCCCCG . 441.0 55.0 542.0 0.0 . 12 . . . none . . PASS Atlas-SNP NR2F2 7026 hgsc.bcm.edu hg19 15 96880778 96880778 + Missense_Mutation SNP C C A novel TCGA-PJ-A8JU-01A-11D-A35Z-10 TCGA-PJ-A8JU-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 13034367-8ee9-4a37-b910-2798632c44fe d0b1cf4a-51b3-49a9-9a97-c719fa400826 . NR2F2 NM_021005 exon3 c.C1172A p.P391H AAACCCCCATCGA . 129.0 45.0 155.0 0.0 . 35 . . . none . . PASS Atlas-SNP ZG16B 124220 hgsc.bcm.edu hg19 16 2880794 2880794 + Missense_Mutation SNP A A T novel TCGA-PJ-A8JU-01A-11D-A35Z-10 TCGA-PJ-A8JU-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 13034367-8ee9-4a37-b910-2798632c44fe d0b1cf4a-51b3-49a9-9a97-c719fa400826 . ZG16B NM_145252 exon3 c.A260T p.K87I TGGTGAAAAGGTG . 140.0 76.0 97.0 0.0 . 16 . . . none . . PASS Atlas-SNP CES4A 283848 hgsc.bcm.edu hg19 16 67038021 67038021 + Missense_Mutation SNP T T A rs3859072 byhapmap;alternate_allele TCGA-PJ-A8JU-01A-11D-A35Z-10 TCGA-PJ-A8JU-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 13034367-8ee9-4a37-b910-2798632c44fe d0b1cf4a-51b3-49a9-9a97-c719fa400826 . CES4A NM_173815 exon9 c.T974A p.V325E ATGGTGTGGTGAT . 142.0 30.0 139.0 0.0 . 24 . . . alt T|1.000;|0.000 . PASS Atlas-SNP OR1A1 8383 hgsc.bcm.edu hg19 17 3119721 3119721 + Silent SNP C C T novel TCGA-PJ-A8JU-01A-11D-A35Z-10 TCGA-PJ-A8JU-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 13034367-8ee9-4a37-b910-2798632c44fe d0b1cf4a-51b3-49a9-9a97-c719fa400826 OR1A1,NS,carcinoma,0,1 OR1A1 NM_014565 exon1 c.C807T p.D269D AAAAGACGCAGTG . 112.0 38.0 135.0 0.0 . 54 . . . none . . PASS Atlas-SNP MYH1 4619 hgsc.bcm.edu hg19 17 10404016 10404016 + Missense_Mutation SNP C C G novel TCGA-PJ-A8JU-01A-11D-A35Z-10 TCGA-PJ-A8JU-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 13034367-8ee9-4a37-b910-2798632c44fe d0b1cf4a-51b3-49a9-9a97-c719fa400826 . MYH1 NM_005963 exon28 c.G3792C p.K1264N CTTGGTCTTAATT . 77.0 23.0 74.0 0.0 . 403 . . . none . . PASS Atlas-SNP GRB7 2886 hgsc.bcm.edu hg19 17 37903002 37903002 + Splice_Site SNP A A C novel TCGA-PJ-A8JU-01A-11D-A35Z-10 TCGA-PJ-A8JU-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 13034367-8ee9-4a37-b910-2798632c44fe d0b1cf4a-51b3-49a9-9a97-c719fa400826 . GRB7 NM_005310 exon15 c.1453-2A>C . TACCCCAGAGCGA . 59.0 20.0 65.0 0.0 . 48 . . . none . . PASS Atlas-SNP KRT28 162605 hgsc.bcm.edu hg19 17 38955927 38955927 + Silent SNP G G A novel TCGA-PJ-A8JU-01A-11D-A35Z-10 TCGA-PJ-A8JU-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 13034367-8ee9-4a37-b910-2798632c44fe d0b1cf4a-51b3-49a9-9a97-c719fa400826 . KRT28 NM_181535 exon1 c.C219T p.G73G AGCAAAGCCAATA . 90.0 32.0 93.0 0.0 . 65 . . . none . . PASS Atlas-SNP KRT33B 3884 hgsc.bcm.edu hg19 17 39521769 39521769 + Missense_Mutation SNP G G T novel TCGA-PJ-A8JU-01A-11D-A35Z-10 TCGA-PJ-A8JU-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 13034367-8ee9-4a37-b910-2798632c44fe d0b1cf4a-51b3-49a9-9a97-c719fa400826 . KRT33B NM_002279 exon4 c.C625A p.L209I CGTTGAGGCGGTC . 136.0 6.0 159.0 0.0 . 46 . . . none . . PASS Atlas-SNP KPNB1 3837 hgsc.bcm.edu hg19 17 45735997 45735997 + Silent SNP G G A novel TCGA-PJ-A8JU-01A-11D-A35Z-10 TCGA-PJ-A8JU-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 13034367-8ee9-4a37-b910-2798632c44fe d0b1cf4a-51b3-49a9-9a97-c719fa400826 . KPNB1 NM_002265 exon5 c.A607A p.T203T TCATTGGAGTTCA . 49.0 20.0 62.0 0.0 . 58 . . . none . . PASS Atlas-SNP HOXB13 10481 hgsc.bcm.edu hg19 17 46805780 46805780 + Missense_Mutation SNP G G A novel TCGA-PJ-A8JU-01A-11D-A35Z-10 TCGA-PJ-A8JU-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 13034367-8ee9-4a37-b910-2798632c44fe d0b1cf4a-51b3-49a9-9a97-c719fa400826 . HOXB13 NM_006361 exon1 c.C176T p.P59L TTTGGCGGCTCCG . 59.0 21.0 71.0 0.0 . 28 . . . none . . PASS Atlas-SNP DLX3 1747 hgsc.bcm.edu hg19 17 48072155 48072155 + Missense_Mutation SNP T T C novel TCGA-PJ-A8JU-01A-11D-A35Z-10 TCGA-PJ-A8JU-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 13034367-8ee9-4a37-b910-2798632c44fe d0b1cf4a-51b3-49a9-9a97-c719fa400826 . DLX3 NM_005220 exon1 c.A208G p.N70D TGAGATTGAATTG . 73.0 28.0 109.0 0.0 . 28 . . . none . . PASS Atlas-SNP USP32 84669 hgsc.bcm.edu hg19 17 58262881 58262881 + Missense_Mutation SNP C C A novel TCGA-PJ-A8JU-01A-11D-A35Z-10 TCGA-PJ-A8JU-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 13034367-8ee9-4a37-b910-2798632c44fe d0b1cf4a-51b3-49a9-9a97-c719fa400826 . USP32 NM_032582 exon30 c.G3774T p.K1258N CTTACACTTGGAA . 180.0 65.0 203.0 0.0 . 128 . . . none . . PASS Atlas-SNP MED13 9969 hgsc.bcm.edu hg19 17 60039087 60039087 + Silent SNP G G T novel TCGA-PJ-A8JU-01A-11D-A35Z-10 TCGA-PJ-A8JU-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 13034367-8ee9-4a37-b910-2798632c44fe d0b1cf4a-51b3-49a9-9a97-c719fa400826 MED13,colon,carcinoma,0,1 MED13 NM_005121 exon22 c.C5118A p.I1706I GGGATAGATTTCT . 82.0 19.0 109.0 0.0 . 181 . . . none . . PASS Atlas-SNP ACE 1636 hgsc.bcm.edu hg19 17 61558530 61558530 + Missense_Mutation SNP C C G novel TCGA-PJ-A8JU-01A-11D-A35Z-10 TCGA-PJ-A8JU-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 13034367-8ee9-4a37-b910-2798632c44fe d0b1cf4a-51b3-49a9-9a97-c719fa400826 . ACE NM_000789 exon6 c.C926G p.T309S ATGTCACCAGTAC . 128.0 42.0 148.0 0.0 . 187 . . . none . . PASS Atlas-SNP SOCS3 9021 hgsc.bcm.edu hg19 17 76355088 76355088 + Missense_Mutation SNP T T C novel TCGA-PJ-A8JU-01A-11D-A35Z-10 TCGA-PJ-A8JU-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 13034367-8ee9-4a37-b910-2798632c44fe d0b1cf4a-51b3-49a9-9a97-c719fa400826 . SOCS3 NM_003955 exon2 c.A89G p.E30G TGGTACTCGCTCT . 90.0 32.0 129.0 0.0 . 16 . . . none . . PASS Atlas-SNP PIEZO2 63895 hgsc.bcm.edu hg19 18 10680336 10680336 + Silent SNP T T C novel TCGA-PJ-A8JU-01A-11D-A35Z-10 TCGA-PJ-A8JU-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 13034367-8ee9-4a37-b910-2798632c44fe d0b1cf4a-51b3-49a9-9a97-c719fa400826 .,2 . NM_022068 exon48 c.A7473G p.K2491K GTCTTCTTTTTCA . 64.0 28.0 73.0 0.0 . . . . . none . . PASS Atlas-SNP PIEZO2 63895 hgsc.bcm.edu hg19 18 10680342 10680342 + Nonsense_Mutation SNP A A T novel TCGA-PJ-A8JU-01A-11D-A35Z-10 TCGA-PJ-A8JU-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 13034367-8ee9-4a37-b910-2798632c44fe d0b1cf4a-51b3-49a9-9a97-c719fa400826 . . NM_022068 exon48 c.T7467A p.Y2489X TTTTTCATAATTT . 60.0 27.0 63.0 0.0 . . . . . none . . PASS Atlas-SNP FUT5 2527 hgsc.bcm.edu hg19 19 5867537 5867537 + Missense_Mutation SNP C C T novel TCGA-PJ-A8JU-01A-11D-A35Z-10 TCGA-PJ-A8JU-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 13034367-8ee9-4a37-b910-2798632c44fe d0b1cf4a-51b3-49a9-9a97-c719fa400826 . FUT5 NM_002034 exon2 c.G200A p.S67N GCCATGCTGTCCT . 80.0 33.0 93.0 0.0 . 29 . . . none . . PASS Atlas-SNP CRB3 92359 hgsc.bcm.edu hg19 19 6466490 6466490 + Missense_Mutation SNP T T C novel TCGA-PJ-A8JU-01A-11D-A35Z-10 TCGA-PJ-A8JU-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 13034367-8ee9-4a37-b910-2798632c44fe d0b1cf4a-51b3-49a9-9a97-c719fa400826 . CRB3 NM_174881 exon4 c.T170C p.I57T AAGCCATCACTGC . 34.0 7.0 39.0 0.0 . 8 . . . none . . PASS Atlas-SNP ZGLP1 100125288 hgsc.bcm.edu hg19 19 10418909 10418909 + Missense_Mutation SNP T T A novel TCGA-PJ-A8JU-01A-11D-A35Z-10 TCGA-PJ-A8JU-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 13034367-8ee9-4a37-b910-2798632c44fe d0b1cf4a-51b3-49a9-9a97-c719fa400826 . ZGLP1 NM_001103167 exon1 c.A449T p.K150M TGAAACTTCAGAG . 30.0 12.0 29.0 0.0 . 18 . . . none . . PASS Atlas-SNP GCDH 2639 hgsc.bcm.edu hg19 19 13010540 13010540 + Missense_Mutation SNP A A G rs376334735 TCGA-PJ-A8JU-01A-11D-A35Z-10 TCGA-PJ-A8JU-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 13034367-8ee9-4a37-b910-2798632c44fe d0b1cf4a-51b3-49a9-9a97-c719fa400826 . GCDH NM_013976 exon12 c.A1270G p.T424A AAAAGAAGATGGA . 136.0 36.0 174.0 0.0 . 76 . . . weak . . PASS Atlas-SNP CILP2 148113 hgsc.bcm.edu hg19 19 19655554 19655554 + Missense_Mutation SNP C C T novel TCGA-PJ-A8JU-01A-11D-A35Z-10 TCGA-PJ-A8JU-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 13034367-8ee9-4a37-b910-2798632c44fe d0b1cf4a-51b3-49a9-9a97-c719fa400826 CILP2,caecum,carcinoma,0,1 CILP2 NM_153221 exon8 c.C2200T p.R734C CCTGAGCGCCGCC . 70.0 27.0 80.0 0.0 . 84 . . . none . . PASS Atlas-SNP ZNF527 84503 hgsc.bcm.edu hg19 19 37879856 37879856 + Missense_Mutation SNP A A G novel TCGA-PJ-A8JU-01A-11D-A35Z-10 TCGA-PJ-A8JU-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 13034367-8ee9-4a37-b910-2798632c44fe d0b1cf4a-51b3-49a9-9a97-c719fa400826 .,1 ZNF527 NM_032453 exon5 c.A905G p.Y302C AACCATATGCATG . 85.0 5.0 63.0 2.0 . 78 . . . none . . PASS Atlas-SNP PRKD2 25865 hgsc.bcm.edu hg19 19 47181737 47181737 + Missense_Mutation SNP T T G novel TCGA-PJ-A8JU-01A-11D-A35Z-10 TCGA-PJ-A8JU-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 13034367-8ee9-4a37-b910-2798632c44fe d0b1cf4a-51b3-49a9-9a97-c719fa400826 . PRKD2 NM_016457 exon16 c.A2254C p.N752H CCTCGTTGAAAGG . 100.0 34.0 109.0 0.0 . 94 . . . none . . PASS Atlas-SNP CRX 1406 hgsc.bcm.edu hg19 19 48342911 48342911 + Missense_Mutation SNP C C T novel TCGA-PJ-A8JU-01A-11D-A35Z-10 TCGA-PJ-A8JU-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 13034367-8ee9-4a37-b910-2798632c44fe d0b1cf4a-51b3-49a9-9a97-c719fa400826 . CRX NM_000554 exon4 c.C587T p.A196V CCTACGCCCCGGC . 66.0 29.0 50.0 0.0 . 52 . . . none . . PASS Atlas-SNP HRC 3270 hgsc.bcm.edu hg19 19 49656860 49656860 + Silent SNP C C T novel TCGA-PJ-A8JU-01A-11D-A35Z-10 TCGA-PJ-A8JU-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 13034367-8ee9-4a37-b910-2798632c44fe d0b1cf4a-51b3-49a9-9a97-c719fa400826 HRC,NS,carcinoma,0,1 HRC NM_002152 exon1 c.G1635A p.E545E TTCTTCCTCCTCC . 25.0 3.0 38.0 1.0 . 85 . . . none . . PASS Atlas-SNP ZNF71 58491 hgsc.bcm.edu hg19 19 57133451 57133451 + Missense_Mutation SNP G G A novel TCGA-PJ-A8JU-01A-11D-A35Z-10 TCGA-PJ-A8JU-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 13034367-8ee9-4a37-b910-2798632c44fe d0b1cf4a-51b3-49a9-9a97-c719fa400826 . ZNF71 NM_021216 exon3 c.G796A p.G266R CACACCGGGGAGA . 186.0 66.0 180.0 0.0 . 69 . . . none . . PASS Atlas-SNP ZNF419 79744 hgsc.bcm.edu hg19 19 58004676 58004676 + Missense_Mutation SNP A A G novel TCGA-PJ-A8JU-01A-11D-A35Z-10 TCGA-PJ-A8JU-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 13034367-8ee9-4a37-b910-2798632c44fe d0b1cf4a-51b3-49a9-9a97-c719fa400826 . ZNF419 NM_001098491 exon5 c.A754G p.I252V CACCAAATAGTTC . 92.0 33.0 105.0 0.0 . 134 . . . none . . PASS Atlas-SNP STAU1 6780 hgsc.bcm.edu hg19 20 47732330 47732330 + Silent SNP T T C novel TCGA-PJ-A8JU-01A-11D-A35Z-10 TCGA-PJ-A8JU-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 13034367-8ee9-4a37-b910-2798632c44fe d0b1cf4a-51b3-49a9-9a97-c719fa400826 . STAU1 NM_017453 exon13 c.A1707G p.G569G CATTGGTCCGTTT . 51.0 15.0 54.0 0.0 . 54 . . . none . . PASS Atlas-SNP BRWD1 54014 hgsc.bcm.edu hg19 21 40670471 40670471 + Missense_Mutation SNP A A C novel TCGA-PJ-A8JU-01A-11D-A35Z-10 TCGA-PJ-A8JU-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 13034367-8ee9-4a37-b910-2798632c44fe d0b1cf4a-51b3-49a9-9a97-c719fa400826 . BRWD1 NM_001007246 exon5 c.T236G p.L79W ATTTGCAAAAGAT . 323.0 91.0 301.0 0.0 . 325 . . . none . . PASS Atlas-SNP MN1 4330 hgsc.bcm.edu hg19 22 28193970 28193970 + Silent SNP T T C novel TCGA-PJ-A8JU-01A-11D-A35Z-10 TCGA-PJ-A8JU-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 13034367-8ee9-4a37-b910-2798632c44fe d0b1cf4a-51b3-49a9-9a97-c719fa400826 . MN1 NM_002430 exon1 c.A2562G p.P854P GCCCTCTGGCGGG . 28.0 12.0 38.0 0.0 . 122 . . . none . . PASS Atlas-SNP ATF4 468 hgsc.bcm.edu hg19 22 39918544 39918544 + Silent SNP C C A rs189922789 bycluster;by1000genomes;alternate_allele TCGA-PJ-A8JU-01A-11D-A35Z-10 TCGA-PJ-A8JU-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 13034367-8ee9-4a37-b910-2798632c44fe d0b1cf4a-51b3-49a9-9a97-c719fa400826 . ATF4 NM_001675 exon2 c.C993A p.I331I GGAGATCCAGTAC . 122.0 64.0 210.0 0.0 . 27 . . . alt C|1.000;G|0.000 . PASS Atlas-SNP RGAG1 57529 hgsc.bcm.edu hg19 X 109694814 109694814 + Silent SNP G G A novel TCGA-PJ-A8JU-01A-11D-A35Z-10 TCGA-PJ-A8JU-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 13034367-8ee9-4a37-b910-2798632c44fe d0b1cf4a-51b3-49a9-9a97-c719fa400826 . RGAG1 NM_020769 exon3 c.G969A p.P323P CACACCGCTACTG . 69.0 5.0 148.0 0.0 . 168 . . . none . . PASS Atlas-SNP IL32 9235 hgsc.bcm.edu hg19 16 3119166 3119166 + Frame_Shift_Del DEL T T - novel TCGA-PJ-A8JU-01A-11D-A35Z-10 TCGA-PJ-A8JU-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 13034367-8ee9-4a37-b910-2798632c44fe d0b1cf4a-51b3-49a9-9a97-c719fa400826 . IL32 NM_004221 exon7 c.376delG p.V126fs . . 317.0 117.0 267.0 0.0 . 32 . 0.369085 0 none . . PASS Atlas-Indel,Pindel HOXD4 3233 hgsc.bcm.edu hg19 2 177016768 177016783 + Frame_Shift_Del DEL GGATGAAGAAGGTGCA GGATGAAGAAGGTGCA - novel TCGA-PJ-A8JU-01A-11D-A35Z-10 TCGA-PJ-A8JU-10A-01D-A35Z-10 GGATGAAGAAGGTGCA GGATGAAGAAGGTGCA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 13034367-8ee9-4a37-b910-2798632c44fe d0b1cf4a-51b3-49a9-9a97-c719fa400826 . HOXD4 NM_014621 exon1 c.406_421del p.136_141del . . 66.0 14.0 127.0 0.0 . 32 . 0.212121 0 none . . PASS Atlas-Indel,Pindel TUBGCP3 10426 hgsc.bcm.edu hg19 13 113212595 113212596 + Frame_Shift_Ins INS - - G novel TCGA-PJ-A8JU-01A-11D-A35Z-10 TCGA-PJ-A8JU-10A-01D-A35Z-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 13034367-8ee9-4a37-b910-2798632c44fe d0b1cf4a-51b3-49a9-9a97-c719fa400826 TUBGCP3,NS,carcinoma,0,1 TUBGCP3 NM_006322 exon5 c.463_464insC p.G155fs . . 79.0 30.0 97.0 0.0 . 74 . 0.379747 0 none . . PASS Atlas-Indel,Pindel RNF185 91445 hgsc.bcm.edu hg19 22 31583132 31583132 + Frame_Shift_Del DEL G G - novel TCGA-PJ-A8JU-01A-11D-A35Z-10 TCGA-PJ-A8JU-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 13034367-8ee9-4a37-b910-2798632c44fe d0b1cf4a-51b3-49a9-9a97-c719fa400826 . RNF185 NM_152267 exon2 c.51delA p.A17fs . . 102.0 47.0 184.0 0.0 . 14 . 0.460784 0 none . . PASS Atlas-Indel,Pindel SOX12 6666 hgsc.bcm.edu hg19 20 306671 306679 + In_Frame_Del DEL ACCCCGAGC ACCCCGAGC - novel TCGA-PJ-A8JU-01A-11D-A35Z-10 TCGA-PJ-A8JU-10A-01D-A35Z-10 ACCCCGAGC ACCCCGAGC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 13034367-8ee9-4a37-b910-2798632c44fe d0b1cf4a-51b3-49a9-9a97-c719fa400826 . SOX12 NM_006943 exon1 c.102_110del p.34_37del . . 71.0 15.0 95.0 0.0 . 8 . 0.211268 0 none . . PASS Atlas-Indel,Pindel EFCAB13 124989 hgsc.bcm.edu hg19 17 45452288 45452311 + In_Frame_Del DEL AAAAACAGGTTTCGTCTACGGAAA AAAAACAGGTTTCGTCTACGGAAA - novel TCGA-PJ-A8JU-01A-11D-A35Z-10 TCGA-PJ-A8JU-10A-01D-A35Z-10 AAAAACAGGTTTCGTCTACGGAAA AAAAACAGGTTTCGTCTACGGAAA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 13034367-8ee9-4a37-b910-2798632c44fe d0b1cf4a-51b3-49a9-9a97-c719fa400826 . . NM_152347 exon12 c.1327_1350del p.443_450del . . 168.0 23.0 248.0 0.0 . . . 0.136905 0 none . . PASS Atlas-Indel,Pindel KLK3 354 hgsc.bcm.edu hg19 19 51361852 51361853 + Splice_Site INS - - TTT novel TCGA-PJ-A8JU-01A-11D-A35Z-10 TCGA-PJ-A8JU-10A-01D-A35Z-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 13034367-8ee9-4a37-b910-2798632c44fe d0b1cf4a-51b3-49a9-9a97-c719fa400826 . KLK3 NM_001030047 exon4 c.630+1->TTT . . . 59.0 18.0 77.0 0.0 . 76 . 0.305085 0 none . . PASS Atlas-Indel,Pindel MUC16 94025 hgsc.bcm.edu hg19 19 9074427 9074427 + Frame_Shift_Del DEL A A - novel TCGA-PJ-A8JU-01A-11D-A35Z-10 TCGA-PJ-A8JU-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 13034367-8ee9-4a37-b910-2798632c44fe d0b1cf4a-51b3-49a9-9a97-c719fa400826 . MUC16 NM_024690 exon3 c.13020delC p.V4340fs . . 78.0 36.0 78.0 0.0 . 4315 . 0.461538 0 none . . PASS Atlas-Indel,Pindel MRC2 9902 hgsc.bcm.edu hg19 17 60743875 60743875 + Frame_Shift_Del DEL A A - novel TCGA-PJ-A8JU-01A-11D-A35Z-10 TCGA-PJ-A8JU-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 13034367-8ee9-4a37-b910-2798632c44fe d0b1cf4a-51b3-49a9-9a97-c719fa400826 . MRC2 NM_006039 exon4 c.753delT p.F251fs . . 47.0 15.0 78.0 0.0 . 126 . 0.319149 0 none . . PASS Atlas-INDEL GDF15 9518 hgsc.bcm.edu hg19 19 18497000 18497001 + Frame_Shift_Del DEL AT AT - novel TCGA-PJ-A8JU-01A-11D-A35Z-10 TCGA-PJ-A8JU-10A-01D-A35Z-10 AT AT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 13034367-8ee9-4a37-b910-2798632c44fe d0b1cf4a-51b3-49a9-9a97-c719fa400826 . GDF15 NM_004864 wholegene . . . . 48.0 11.0 66.0 0.0 . 31 . 0.229167 0 none . . PASS Atlas-INDEL ANKRD50 57182 hgsc.bcm.edu hg19 4 125590179 125590187 + In_Frame_Del DEL TCAGAACCT TCAGAACCT - novel TCGA-PJ-A8JU-01A-11D-A35Z-10 TCGA-PJ-A8JU-10A-01D-A35Z-10 TCAGAACCT TCAGAACCT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 13034367-8ee9-4a37-b910-2798632c44fe d0b1cf4a-51b3-49a9-9a97-c719fa400826 . ANKRD50 NM_020337 exon4 c.4246_4254del p.1416_1418del . . 66.0 15.0 78.0 0.0 . 136 . 0.227273 0 none . . PASS Atlas-Indel,Pindel SETD1A 9739 hgsc.bcm.edu hg19 16 30976438 30976439 + Frame_Shift_Ins INS - - C novel TCGA-PJ-A8JU-01A-11D-A35Z-10 TCGA-PJ-A8JU-10A-01D-A35Z-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 13034367-8ee9-4a37-b910-2798632c44fe d0b1cf4a-51b3-49a9-9a97-c719fa400826 . SETD1A NM_014712 exon7 c.1375_1376insC p.S459fs . . 66.0 14.0 51.0 0.0 . 143 . 0.212121 0 none . . PASS Atlas-Indel,Pindel HTR1B 3351 hgsc.bcm.edu hg19 6 78172132 78172132 + Frame_Shift_Del DEL A A - novel TCGA-PJ-A8JU-01A-11D-A35Z-10 TCGA-PJ-A8JU-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 13034367-8ee9-4a37-b910-2798632c44fe d0b1cf4a-51b3-49a9-9a97-c719fa400826 . HTR1B NM_000863 exon1 c.990delC p.F330fs . . 75.0 32.0 93.0 0.0 . 55 . 0.426667 0 none . . PASS Atlas-Indel,Pindel GOT2 2806 hgsc.bcm.edu hg19 16 58742096 58742096 + Frame_Shift_Del DEL G G - novel TCGA-PJ-A8JU-01A-11D-A35Z-10 TCGA-PJ-A8JU-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 13034367-8ee9-4a37-b910-2798632c44fe d0b1cf4a-51b3-49a9-9a97-c719fa400826 . GOT2 NM_002080 exon10 c.1273delA p.I425fs . . 53.0 28.0 47.0 0.0 . 42 . 0.528302 0 none . . PASS Atlas-Indel,Pindel GOLGA6B 55889 hgsc.bcm.edu hg19 15 72947139 72947139 + Frame_Shift_Del DEL A A - novel TCGA-PJ-A8JU-01A-11D-A35Z-10 TCGA-PJ-A8JU-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 13034367-8ee9-4a37-b910-2798632c44fe d0b1cf4a-51b3-49a9-9a97-c719fa400826 . GOLGA6B NM_018652 exon1 c.60delT p.N20fs . . 621.0 33.0 703.0 0.0 . 30 . 0.053 . none . . PASS Pindel GDF15 9518 hgsc.bcm.edu hg19 19 18496998 18497015 + Frame_Shift_Del DEL AACCTGCACAGCCATGCC AACCTGCACAGCCATGCC - novel TCGA-PJ-A8JU-01A-11D-A35Z-10 TCGA-PJ-A8JU-10A-01D-A35Z-10 AACCTGCACAGCCATGCC AACCTGCACAGCCATGCC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 13034367-8ee9-4a37-b910-2798632c44fe d0b1cf4a-51b3-49a9-9a97-c719fa400826 . GDF15 NM_004864 wholegene . . . . 48.0 11.0 62.0 0.0 . 31 . 0.229 . none . . PASS Pindel PTEN 5728 hgsc.bcm.edu hg19 10 89720833 89720833 + Frame_Shift_Del DEL A A - novel TCGA-PJ-A8JU-01A-11D-A35Z-10 TCGA-PJ-A8JU-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 13034367-8ee9-4a37-b910-2798632c44fe d0b1cf4a-51b3-49a9-9a97-c719fa400826 . PTEN NM_000314 exon8 c.983delC p.A328fs . . 270.0 97.0 416.0 0.0 . 3652 . 0.359 . none . . PASS Pindel