Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
DNAJC11	55735	hgsc.bcm.edu	hg19	1	6705133	6705133	+	Silent	SNP	A	A	G	novel		TCGA-O9-A75Z-01A-11D-A33Q-10	TCGA-O9-A75Z-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	11f95391-f644-4b23-b2b3-c3020648260b	b07e7c8d-9fc0-4376-89e2-8ceb9afcaa38	.	DNAJC11	NM_018198	exon9	c.T948C	p.D316D	ATCGTCATCTTGG	.	73.0	26.0	77.0	0.0	.	93	.	.	.	none	.	.	PASS	Atlas-SNP
NBPF1	55672	hgsc.bcm.edu	hg19	1	16918552	16918552	+	Splice_Site	SNP	C	C	T	novel		TCGA-O9-A75Z-01A-11D-A33Q-10	TCGA-O9-A75Z-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	11f95391-f644-4b23-b2b3-c3020648260b	b07e7c8d-9fc0-4376-89e2-8ceb9afcaa38	.	.	.	.	.	.	CAGGGACTGGGGA	.	68.0	8.0	101.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
KDM4A	9682	hgsc.bcm.edu	hg19	1	44133641	44133641	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-O9-A75Z-01A-11D-A33Q-10	TCGA-O9-A75Z-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	11f95391-f644-4b23-b2b3-c3020648260b	b07e7c8d-9fc0-4376-89e2-8ceb9afcaa38	.	KDM4A	NM_014663	exon9	c.G1114C	p.E372Q	CCAGAGGAGGACA	.	105.0	34.0	151.0	0.0	.	74	.	.	.	none	.	.	PASS	Atlas-SNP
AGT	183	hgsc.bcm.edu	hg19	1	230839940	230839940	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-O9-A75Z-01A-11D-A33Q-10	TCGA-O9-A75Z-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	11f95391-f644-4b23-b2b3-c3020648260b	b07e7c8d-9fc0-4376-89e2-8ceb9afcaa38	AGT,colon,carcinoma,0,1	AGT	NM_000029	exon4	c.A1268G	p.E423G	CATACCTCCCCCA	.	96.0	4.0	122.0	0.0	.	62	.	.	.	none	.	.	PASS	Atlas-SNP
OR2W3	343171	hgsc.bcm.edu	hg19	1	248059782	248059782	+	Silent	SNP	G	G	A	novel		TCGA-O9-A75Z-01A-11D-A33Q-10	TCGA-O9-A75Z-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	11f95391-f644-4b23-b2b3-c3020648260b	b07e7c8d-9fc0-4376-89e2-8ceb9afcaa38	.	OR2W3	NM_001001957	exon1	c.G894A	p.K298K	GGTGAAGGGGGCA	.	88.0	8.0	78.0	0.0	.	113	.	.	.	none	.	.	PASS	Atlas-SNP
NLRC4	58484	hgsc.bcm.edu	hg19	2	32474767	32474767	+	Silent	SNP	A	A	G	novel		TCGA-O9-A75Z-01A-11D-A33Q-10	TCGA-O9-A75Z-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	11f95391-f644-4b23-b2b3-c3020648260b	b07e7c8d-9fc0-4376-89e2-8ceb9afcaa38	.	NLRC4	NM_001199138	exon4	c.T2166C	p.S722S	GAGGGGACTGGCT	.	94.0	40.0	100.0	0.0	.	165	.	.	.	none	.	.	PASS	Atlas-SNP
IQCJ	654502	hgsc.bcm.edu	hg19	3	158983179	158983179	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-O9-A75Z-01A-11D-A33Q-10	TCGA-O9-A75Z-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	11f95391-f644-4b23-b2b3-c3020648260b	b07e7c8d-9fc0-4376-89e2-8ceb9afcaa38	.	IQCJ	NM_001042705	exon5	c.T467C	p.L156P	GTTTTCTCACCCT	.	87.0	4.0	129.0	0.0	.	28	.	.	.	none	.	.	PASS	Atlas-SNP
FBXL17	64839	hgsc.bcm.edu	hg19	5	107700635	107700635	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-O9-A75Z-01A-11D-A33Q-10	TCGA-O9-A75Z-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	11f95391-f644-4b23-b2b3-c3020648260b	b07e7c8d-9fc0-4376-89e2-8ceb9afcaa38	.	FBXL17	NM_001163315	exon3	c.T1178A	p.I393N	TCAGAAATGTTGA	.	155.0	66.0	144.0	0.0	.	60	.	.	.	none	.	.	PASS	Atlas-SNP
LMNB1	4001	hgsc.bcm.edu	hg19	5	126154725	126154725	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-O9-A75Z-01A-11D-A33Q-10	TCGA-O9-A75Z-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	11f95391-f644-4b23-b2b3-c3020648260b	b07e7c8d-9fc0-4376-89e2-8ceb9afcaa38	.	LMNB1	NM_005573	exon6	c.G1051T	p.D351Y	ATAAGGGATCAAA	.	166.0	62.0	172.0	0.0	.	49	.	.	.	none	.	.	PASS	Atlas-SNP
PCDHGA12	26025	hgsc.bcm.edu	hg19	5	140811391	140811391	+	Silent	SNP	G	G	T	novel		TCGA-O9-A75Z-01A-11D-A33Q-10	TCGA-O9-A75Z-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	11f95391-f644-4b23-b2b3-c3020648260b	b07e7c8d-9fc0-4376-89e2-8ceb9afcaa38	.	PCDHGA12	NM_032094	exon1	c.G1065T	p.S355S	CAGCTCGGTTCCC	.	112.0	5.0	125.0	0.0	.	271	.	.	.	none	.	.	PASS	Atlas-SNP
ERCC6	2074	hgsc.bcm.edu	hg19	10	50668440	50668440	+	Silent	SNP	T	T	C	novel		TCGA-O9-A75Z-01A-11D-A33Q-10	TCGA-O9-A75Z-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	11f95391-f644-4b23-b2b3-c3020648260b	b07e7c8d-9fc0-4376-89e2-8ceb9afcaa38	.	ERCC6	NM_000124	exon20	c.G4041G	p.R1347R	TGGAGATGTTGAT	.	49.0	20.0	75.0	0.0	.	162	.	.	.	none	.	.	PASS	Atlas-SNP
MKI67	4288	hgsc.bcm.edu	hg19	10	129904962	129904962	+	Silent	SNP	G	G	T	novel		TCGA-O9-A75Z-01A-11D-A33Q-10	TCGA-O9-A75Z-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	11f95391-f644-4b23-b2b3-c3020648260b	b07e7c8d-9fc0-4376-89e2-8ceb9afcaa38	.	MKI67	NM_002417	exon13	c.C5142A	p.I1714I	GAGCTCGATGAAG	.	62.0	4.0	57.0	0.0	.	363	.	.	.	none	.	.	PASS	Atlas-SNP
HSPA8	3312	hgsc.bcm.edu	hg19	11	122931977	122931977	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-O9-A75Z-01A-11D-A33Q-10	TCGA-O9-A75Z-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	11f95391-f644-4b23-b2b3-c3020648260b	b07e7c8d-9fc0-4376-89e2-8ceb9afcaa38	.	HSPA8	NM_006597	exon2	c.G56C	p.G19A	AAAACACCCACAC	.	77.0	43.0	107.0	0.0	.	168	.	.	.	none	.	.	PASS	Atlas-SNP
MT1E	4493	hgsc.bcm.edu	hg19	16	56660835	56660835	+	Silent	SNP	G	G	A	novel		TCGA-O9-A75Z-01A-11D-A33Q-10	TCGA-O9-A75Z-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	11f95391-f644-4b23-b2b3-c3020648260b	b07e7c8d-9fc0-4376-89e2-8ceb9afcaa38	.	MT1E	NM_175617	exon3	c.G138A	p.Q46Q	TGCCCAGGGCTGC	.	69.0	27.0	80.0	0.0	.	7	.	.	.	none	.	.	PASS	Atlas-SNP
SIRT7	51547	hgsc.bcm.edu	hg19	17	79870320	79870320	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-O9-A75Z-01A-11D-A33Q-10	TCGA-O9-A75Z-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	11f95391-f644-4b23-b2b3-c3020648260b	b07e7c8d-9fc0-4376-89e2-8ceb9afcaa38	.	SIRT7	NM_016538	exon10	c.A1175G	p.K392R	GTGCGTTTTGTGC	.	97.0	4.0	81.0	0.0	.	37	.	.	.	none	.	.	PASS	Atlas-SNP
TSHZ3	57616	hgsc.bcm.edu	hg19	19	31768683	31768683	+	Silent	SNP	G	G	A	rs373477520		TCGA-O9-A75Z-01A-11D-A33Q-10	TCGA-O9-A75Z-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	11f95391-f644-4b23-b2b3-c3020648260b	b07e7c8d-9fc0-4376-89e2-8ceb9afcaa38	.	TSHZ3	NM_020856	exon2	c.C2016T	p.S672S	CGGGGGGCTGGGG	.	52.0	23.0	66.0	0.0	.	549	.	.	.	weak	.	.	PASS	Atlas-SNP
C20orf195	79025	hgsc.bcm.edu	hg19	20	62187129	62187129	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-O9-A75Z-01A-11D-A33Q-10	TCGA-O9-A75Z-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	11f95391-f644-4b23-b2b3-c3020648260b	b07e7c8d-9fc0-4376-89e2-8ceb9afcaa38	.	C20orf195	NM_024059	exon2	c.G113T	p.W38L	AGGCGTGGAAGAC	.	64.0	25.0	78.0	0.0	.	21	.	.	.	none	.	.	PASS	Atlas-SNP
TRAPPC10	7109	hgsc.bcm.edu	hg19	21	45518268	45518268	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-O9-A75Z-01A-11D-A33Q-10	TCGA-O9-A75Z-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	11f95391-f644-4b23-b2b3-c3020648260b	b07e7c8d-9fc0-4376-89e2-8ceb9afcaa38	.	TRAPPC10	NM_003274	exon21	c.C3199A	p.P1067T	ATCTTTCCCCCTT	.	83.0	38.0	117.0	0.0	.	109	.	.	.	none	.	.	PASS	Atlas-SNP
MYO18B	84700	hgsc.bcm.edu	hg19	22	26348362	26348362	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-O9-A75Z-01A-11D-A33Q-10	TCGA-O9-A75Z-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	11f95391-f644-4b23-b2b3-c3020648260b	b07e7c8d-9fc0-4376-89e2-8ceb9afcaa38	.	MYO18B	NM_032608	exon38	c.C5943G	p.F1981L	AGAGTTCCAGAAG	.	87.0	40.0	110.0	0.0	.	322	.	.	.	none	.	.	PASS	Atlas-SNP
ATF7IP	55729	hgsc.bcm.edu	hg19	12	14576874	14576874	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-O9-A75Z-01A-11D-A33Q-10	TCGA-O9-A75Z-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	11f95391-f644-4b23-b2b3-c3020648260b	b07e7c8d-9fc0-4376-89e2-8ceb9afcaa38	.	ATF7IP	NM_018179	exon2	c.24delG	p.Q8fs	.	.	86.0	34.0	91.0	0.0	.	136	.	0.395349	0	none	.	.	PASS	Atlas-Indel,Pindel
FRMD6	122786	hgsc.bcm.edu	hg19	14	52156560	52156561	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-O9-A75Z-01A-11D-A33Q-10	TCGA-O9-A75Z-10A-01D-A33Q-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	11f95391-f644-4b23-b2b3-c3020648260b	b07e7c8d-9fc0-4376-89e2-8ceb9afcaa38	.	FRMD6	NM_001042481	exon3	c.6_7insA	p.N2fs	.	.	172.0	80.0	186.0	0.0	.	100	.	0.465116	0	none	.	.	PASS	Atlas-Indel,Pindel
FOXP4	116113	hgsc.bcm.edu	hg19	6	41557563	41557563	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-O9-A75Z-01A-11D-A33Q-10	TCGA-O9-A75Z-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	11f95391-f644-4b23-b2b3-c3020648260b	b07e7c8d-9fc0-4376-89e2-8ceb9afcaa38	.	FOXP4	NM_001012426	exon10	c.1119delG	p.R373fs	.	.	30.0	11.0	33.0	0.0	.	83	.	0.366667	0	none	.	.	PASS	Atlas-INDEL