Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq TVarRat NVarRat dbSNP_Strength dbSNP_AF dbSNP_PopFreq Confidence Algorithm PIK3C2B 5287 hgsc.bcm.edu hg19 1 204413511 204413511 + Missense_Mutation SNP A A G novel TCGA-KV-A6GE-01A-11D-A31X-10 TCGA-KV-A6GE-10A-01D-A31X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq aff18e57-af36-44a3-8a58-5c8633a7ae20 24f06120-19b5-449d-88bf-45b846e314f7 . PIK3C2B NM_002646 exon18 c.T2720C p.I907T GAGCCAATCCACT . 43.0 23.0 54.0 0.0 . 142 . . . none . . PASS Atlas-SNP TLR5 7100 hgsc.bcm.edu hg19 1 223286235 223286235 + Missense_Mutation SNP T T A novel TCGA-KV-A6GE-01A-11D-A31X-10 TCGA-KV-A6GE-10A-01D-A31X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq aff18e57-af36-44a3-8a58-5c8633a7ae20 24f06120-19b5-449d-88bf-45b846e314f7 . TLR5 NM_003268 exon6 c.A139T p.T47S CAGTGGTGTTGAG . 168.0 70.0 140.0 0.0 . 86 . . . none . . PASS Atlas-SNP TTN 7273 hgsc.bcm.edu hg19 2 179424419 179424419 + Missense_Mutation SNP T T A novel TCGA-KV-A6GE-01A-11D-A31X-10 TCGA-KV-A6GE-10A-01D-A31X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq aff18e57-af36-44a3-8a58-5c8633a7ae20 24f06120-19b5-449d-88bf-45b846e314f7 . TTN NM_001267550 exon326 c.A86440T p.N28814Y TGGCATTTTCAAT . 163.0 44.0 104.0 0.0 . 18412 . . . none . . PASS Atlas-SNP EDEM1 9695 hgsc.bcm.edu hg19 3 5229984 5229984 + Missense_Mutation SNP C C G novel TCGA-KV-A6GE-01A-11D-A31X-10 TCGA-KV-A6GE-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq aff18e57-af36-44a3-8a58-5c8633a7ae20 24f06120-19b5-449d-88bf-45b846e314f7 . EDEM1 NM_014674 exon1 c.C494G p.P165R GTGGGCCCGACCG . 54.0 32.0 44.0 0.0 . 45 . . . none . . PASS Atlas-SNP ACY1 95 hgsc.bcm.edu hg19 3 52022828 52022828 + Missense_Mutation SNP C C A novel TCGA-KV-A6GE-01A-11D-A31X-10 TCGA-KV-A6GE-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq aff18e57-af36-44a3-8a58-5c8633a7ae20 24f06120-19b5-449d-88bf-45b846e314f7 . ACY1 NM_001198895 exon14 c.C1048A p.R350S GACAACCGCTATA . 138.0 65.0 85.0 0.0 . 35 . . . none . . PASS Atlas-SNP PLXND1 23129 hgsc.bcm.edu hg19 3 129281631 129281631 + Silent SNP A A G novel TCGA-KV-A6GE-01A-11D-A31X-10 TCGA-KV-A6GE-10A-01D-A31X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq aff18e57-af36-44a3-8a58-5c8633a7ae20 24f06120-19b5-449d-88bf-45b846e314f7 . PLXND1 NM_015103 exon27 c.T4824C p.L1608L CCCACCAAGGTCG . 50.0 25.0 25.0 0.0 . 149 . . . none . . PASS Atlas-SNP MDGA1 266727 hgsc.bcm.edu hg19 6 37622225 37622225 + Silent SNP G G T novel TCGA-KV-A6GE-01A-11D-A31X-10 TCGA-KV-A6GE-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq aff18e57-af36-44a3-8a58-5c8633a7ae20 24f06120-19b5-449d-88bf-45b846e314f7 . MDGA1 NM_153487 exon6 c.C807A p.P269P GGGGAGGGGATCA . 79.0 34.0 115.0 0.0 . 104 . . . none . . PASS Atlas-SNP USP45 85015 hgsc.bcm.edu hg19 6 99894085 99894085 + Silent SNP T T C novel TCGA-KV-A6GE-01A-11D-A31X-10 TCGA-KV-A6GE-10A-01D-A31X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq aff18e57-af36-44a3-8a58-5c8633a7ae20 24f06120-19b5-449d-88bf-45b846e314f7 . USP45 NM_001080481 exon14 c.A1563G p.R521R ACTGGATCTGAAC . 60.0 23.0 69.0 0.0 . 56 . . . none . . PASS Atlas-SNP CREB3 10488 hgsc.bcm.edu hg19 9 35736272 35736272 + Missense_Mutation SNP T T C novel TCGA-KV-A6GE-01A-11D-A31X-10 TCGA-KV-A6GE-10A-01D-A31X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq aff18e57-af36-44a3-8a58-5c8633a7ae20 24f06120-19b5-449d-88bf-45b846e314f7 . CREB3 NM_006368 exon8 c.T745C p.S249P TACTCCTCTGACA . 55.0 23.0 75.0 0.0 . 24 . . . none . . PASS Atlas-SNP MAP3K8 1326 hgsc.bcm.edu hg19 10 30748425 30748425 + Missense_Mutation SNP T T G novel TCGA-KV-A6GE-01A-11D-A31X-10 TCGA-KV-A6GE-10A-01D-A31X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq aff18e57-af36-44a3-8a58-5c8633a7ae20 24f06120-19b5-449d-88bf-45b846e314f7 . MAP3K8 NM_001244134 exon7 c.T1268G p.I423S AGAACATTGCTGG . 42.0 17.0 48.0 0.0 . 46 . . . none . . PASS Atlas-SNP DNHD1 144132 hgsc.bcm.edu hg19 11 6592937 6592937 + Silent SNP G G T novel TCGA-KV-A6GE-01A-11D-A31X-10 TCGA-KV-A6GE-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq aff18e57-af36-44a3-8a58-5c8633a7ae20 24f06120-19b5-449d-88bf-45b846e314f7 . DNHD1 NM_144666 exon43 c.G13983T p.A4661A ACATGCGGAGTGG . 74.0 4.0 92.0 0.0 . 198 . . . none . . PASS Atlas-SNP VSIG10 54621 hgsc.bcm.edu hg19 12 118506351 118506351 + Silent SNP C C T rs373328738 TCGA-KV-A6GE-01A-11D-A31X-10 TCGA-KV-A6GE-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq aff18e57-af36-44a3-8a58-5c8633a7ae20 24f06120-19b5-449d-88bf-45b846e314f7 . VSIG10 NM_019086 exon8 c.G1398A p.E466E CTCCTCCTCTTCC . 132.0 8.0 100.0 0.0 . 41 . . . weak . . PASS Atlas-SNP PRMT5 10419 hgsc.bcm.edu hg19 14 23397402 23397402 + Missense_Mutation SNP A A G novel TCGA-KV-A6GE-01A-11D-A31X-10 TCGA-KV-A6GE-10A-01D-A31X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq aff18e57-af36-44a3-8a58-5c8633a7ae20 24f06120-19b5-449d-88bf-45b846e314f7 . PRMT5 NM_006109 exon3 c.T248C p.V83A TTTCCCACAATTA . 85.0 33.0 59.0 0.0 . 101 . . . none . . PASS Atlas-SNP PRMT7 54496 hgsc.bcm.edu hg19 16 68386313 68386313 + Splice_Site SNP G G A novel TCGA-KV-A6GE-01A-11D-A31X-10 TCGA-KV-A6GE-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq aff18e57-af36-44a3-8a58-5c8633a7ae20 24f06120-19b5-449d-88bf-45b846e314f7 . PRMT7 NM_001184824 exon13 c.1425+1G>A . TTCAGGGTAGGCC . 22.0 9.0 12.0 0.0 . 51 . . . none . . PASS Atlas-SNP BLMH 642 hgsc.bcm.edu hg19 17 28614937 28614937 + Missense_Mutation SNP G G A novel TCGA-KV-A6GE-01A-11D-A31X-10 TCGA-KV-A6GE-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq aff18e57-af36-44a3-8a58-5c8633a7ae20 24f06120-19b5-449d-88bf-45b846e314f7 . BLMH NM_000386 exon4 c.C350T p.A117V ACAAAAGCACTCA . 76.0 17.0 75.0 0.0 . 42 . . . none . . PASS Atlas-SNP ZNF677 342926 hgsc.bcm.edu hg19 19 53740610 53740610 + Missense_Mutation SNP T T C novel TCGA-KV-A6GE-01A-11D-A31X-10 TCGA-KV-A6GE-10A-01D-A31X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq aff18e57-af36-44a3-8a58-5c8633a7ae20 24f06120-19b5-449d-88bf-45b846e314f7 . ZNF677 NM_182609 exon5 c.A1370G p.K457R TAAGGTTTTTCTC . 80.0 23.0 65.0 0.0 . 94 . . . none . . PASS Atlas-SNP ZNF814 730051 hgsc.bcm.edu hg19 19 58385790 58385790 + Missense_Mutation SNP G G T rs111727691 bycluster TCGA-KV-A6GE-01A-11D-A31X-10 TCGA-KV-A6GE-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq aff18e57-af36-44a3-8a58-5c8633a7ae20 24f06120-19b5-449d-88bf-45b846e314f7 . ZNF814 NM_001144989 exon3 c.C968A p.P323H TCATAAGGTCTTT . 115.0 8.0 87.0 0.0 . 93 . . . weak G|0.500;T|0.500 0.500 PASS Atlas-SNP ZNF814 730051 hgsc.bcm.edu hg19 19 58385793 58385793 + Missense_Mutation SNP C C T rs113623532 bycluster TCGA-KV-A6GE-01A-11D-A31X-10 TCGA-KV-A6GE-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq aff18e57-af36-44a3-8a58-5c8633a7ae20 24f06120-19b5-449d-88bf-45b846e314f7 . ZNF814 NM_001144989 exon3 c.G965A p.R322K TAAGGTCTTTTCC . 107.0 8.0 81.0 0.0 . 93 . . . weak C|0.500;T|0.500 0.500 PASS Atlas-SNP TRAPPC10 7109 hgsc.bcm.edu hg19 21 45502876 45502876 + Nonsense_Mutation SNP G G A novel TCGA-KV-A6GE-01A-11D-A31X-10 TCGA-KV-A6GE-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq aff18e57-af36-44a3-8a58-5c8633a7ae20 24f06120-19b5-449d-88bf-45b846e314f7 . TRAPPC10 NM_003274 exon14 c.G1931A p.W644X CGGAGTGGCTTAC . 67.0 32.0 121.0 0.0 . 109 . . . none . . PASS Atlas-SNP F13A1 2162 hgsc.bcm.edu hg19 6 6222265 6222266 + Splice_Site INS - - CACA novel TCGA-KV-A6GE-01A-11D-A31X-10 TCGA-KV-A6GE-10A-01D-A31X-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq aff18e57-af36-44a3-8a58-5c8633a7ae20 24f06120-19b5-449d-88bf-45b846e314f7 . F13A1 NM_000129 exon9 c.1112+1->TGTG . . . 56.0 22.0 55.0 0.0 . 135 . 0.392857 0 none . . PASS Atlas-Indel,Pindel ENPP1 5167 hgsc.bcm.edu hg19 6 132211511 132211511 + Frame_Shift_Del DEL G G - novel TCGA-KV-A6GE-01A-11D-A31X-10 TCGA-KV-A6GE-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq aff18e57-af36-44a3-8a58-5c8633a7ae20 24f06120-19b5-449d-88bf-45b846e314f7 . ENPP1 NM_006208 exon25 c.2637delA p.E879fs . . 167.0 46.0 165.0 0.0 . 108 . 0.275449 0 none . . PASS Atlas-INDEL ARHGEF5 7984 hgsc.bcm.edu hg19 7 144063479 144063479 + Frame_Shift_Del DEL G G - novel TCGA-KV-A6GE-01A-11D-A31X-10 TCGA-KV-A6GE-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq aff18e57-af36-44a3-8a58-5c8633a7ae20 24f06120-19b5-449d-88bf-45b846e314f7 . ARHGEF5 NM_005435 exon3 c.3185delC p.P1062fs . . 900.0 80.0 514.0 0.0 . 73 . 0.0888889 0 none . . PASS Atlas-INDEL ENPP1 5167 hgsc.bcm.edu hg19 6 132211511 132211512 + Frame_Shift_Del DEL GA GA - novel TCGA-KV-A6GE-01A-11D-A31X-10 TCGA-KV-A6GE-10A-01D-A31X-10 GA GA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq aff18e57-af36-44a3-8a58-5c8633a7ae20 24f06120-19b5-449d-88bf-45b846e314f7 . ENPP1 NM_006208 exon25 c.2637_2638del p.879_880del . . 167.0 33.0 167.0 0.0 . 108 . 0.198 . none . . PASS Pindel