Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq TVarRat NVarRat dbSNP_Strength dbSNP_AF dbSNP_PopFreq Confidence Algorithm PRDM2 7799 hgsc.bcm.edu hg19 1 14068533 14068533 + Missense_Mutation SNP G G T novel TCGA-HE-7129-01A-11D-1961-08 TCGA-HE-7129-10A-01D-1962-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c56f3efb-5a25-4967-b817-44b1eb9f440a 3c6e3907-3f31-4a91-825b-87070d603395 . PRDM2 NM_015866 exon5 c.G265T p.D89Y TGCATTGATGCCA . 65.0 35.0 76.0 0.0 . 147 . . . none . . PASS Atlas-SNP CAPN13 92291 hgsc.bcm.edu hg19 2 30966306 30966306 + Missense_Mutation SNP C C A rs372490936 alternate_allele TCGA-HE-7129-01A-11D-1961-08 TCGA-HE-7129-10A-01D-1962-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c56f3efb-5a25-4967-b817-44b1eb9f440a 3c6e3907-3f31-4a91-825b-87070d603395 . CAPN13 NM_144575 exon13 c.G1388T p.R463L TTTCTCCGTGTCT . 458.0 21.0 446.0 0.0 . 70 . . . alt . . PASS Atlas-SNP SRSF7 6432 hgsc.bcm.edu hg19 2 38978383 38978383 + Missense_Mutation SNP G G A novel TCGA-HE-7129-01A-11D-1961-08 TCGA-HE-7129-10A-01D-1962-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c56f3efb-5a25-4967-b817-44b1eb9f440a 3c6e3907-3f31-4a91-825b-87070d603395 . SRSF7 NM_001195446 exon1 c.C16T p.R6W CGTACCGCCCGTA . 88.0 34.0 128.0 0.0 . 29 . . . none . . PASS Atlas-SNP SRSF7 6432 hgsc.bcm.edu hg19 2 38978384 38978384 + Silent SNP C C A novel TCGA-HE-7129-01A-11D-1961-08 TCGA-HE-7129-10A-01D-1962-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c56f3efb-5a25-4967-b817-44b1eb9f440a 3c6e3907-3f31-4a91-825b-87070d603395 . SRSF7 NM_001195446 exon1 c.G15T p.G5G GTACCGCCCGTAA . 87.0 32.0 128.0 0.0 . 29 . . . none . . PASS Atlas-SNP ANKZF1 55139 hgsc.bcm.edu hg19 2 220099828 220099828 + Missense_Mutation SNP G G T novel TCGA-HE-7129-01A-11D-1961-08 TCGA-HE-7129-10A-01D-1962-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c56f3efb-5a25-4967-b817-44b1eb9f440a 3c6e3907-3f31-4a91-825b-87070d603395 . ANKZF1 NM_001042410 exon10 c.G1485T p.W495C GCTCTGGAATGCA . 57.0 22.0 68.0 0.0 . 45 . . . none . . PASS Atlas-SNP ZBTB11 27107 hgsc.bcm.edu hg19 3 101390912 101390912 + Silent SNP C C A novel TCGA-HE-7129-01A-11D-1961-08 TCGA-HE-7129-10A-01D-1962-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c56f3efb-5a25-4967-b817-44b1eb9f440a 3c6e3907-3f31-4a91-825b-87070d603395 . ZBTB11 NM_014415 exon2 c.G456T p.S152S ATCTTCCGATTCA . 186.0 11.0 107.0 0.0 . 77 . . . none . . PASS Atlas-SNP KY 339855 hgsc.bcm.edu hg19 3 134323200 134323200 + Nonsense_Mutation SNP C C A novel TCGA-HE-7129-01A-11D-1961-08 TCGA-HE-7129-10A-01D-1962-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c56f3efb-5a25-4967-b817-44b1eb9f440a 3c6e3907-3f31-4a91-825b-87070d603395 . KY NM_178554 exon11 c.G1207T p.E403X ACACCTCCAACTT . 143.0 104.0 111.0 0.0 . 92 . . . none . . PASS Atlas-SNP PPAT 5471 hgsc.bcm.edu hg19 4 57272675 57272675 + Missense_Mutation SNP G G C novel TCGA-HE-7129-01A-11D-1961-08 TCGA-HE-7129-10A-01D-1962-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c56f3efb-5a25-4967-b817-44b1eb9f440a 3c6e3907-3f31-4a91-825b-87070d603395 . PPAT NM_002703 exon3 c.C388G p.R130G TTAATCGAGCAGC . 118.0 5.0 88.0 0.0 . 41 . . . none . . PASS Atlas-SNP HNRNPAB 3182 hgsc.bcm.edu hg19 5 177632984 177632984 + Silent SNP G G A rs201431713 alternate_allele TCGA-HE-7129-01A-11D-1961-08 TCGA-HE-7129-10A-01D-1962-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c56f3efb-5a25-4967-b817-44b1eb9f440a 3c6e3907-3f31-4a91-825b-87070d603395 . HNRNPAB NM_031266 exon3 c.G351A p.L117L TATCCTGTTCAAA . 198.0 104.0 193.0 0.0 . 24 . . . alt G|0.999;C|0.001 . PASS Atlas-SNP ICK 22858 hgsc.bcm.edu hg19 6 52878690 52878690 + Missense_Mutation SNP G G C novel TCGA-HE-7129-01A-11D-1961-08 TCGA-HE-7129-10A-01D-1962-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c56f3efb-5a25-4967-b817-44b1eb9f440a 3c6e3907-3f31-4a91-825b-87070d603395 . ICK NM_016513 exon10 c.C922G p.L308V TTTCCAGGATGCC . 48.0 23.0 49.0 0.0 . 62 . . . none . . PASS Atlas-SNP CCM2 83605 hgsc.bcm.edu hg19 7 45112359 45112359 + Silent SNP C C T novel TCGA-HE-7129-01A-11D-1961-08 TCGA-HE-7129-10A-01D-1962-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c56f3efb-5a25-4967-b817-44b1eb9f440a 3c6e3907-3f31-4a91-825b-87070d603395 . CCM2 NM_001029835 exon7 c.C843T p.T281T GGAGACCTACGAG . 174.0 41.0 93.0 0.0 . 42 . . . none . . PASS Atlas-SNP TBRG4 9238 hgsc.bcm.edu hg19 7 45145054 45145054 + Missense_Mutation SNP G G T novel TCGA-HE-7129-01A-11D-1961-08 TCGA-HE-7129-10A-01D-1962-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c56f3efb-5a25-4967-b817-44b1eb9f440a 3c6e3907-3f31-4a91-825b-87070d603395 . TBRG4 NM_001261834 exon3 c.C754A p.R252S CCAGGCGGTTCAT . 294.0 12.0 195.0 0.0 . 52 . . . none . . PASS Atlas-SNP PTPN12 5782 hgsc.bcm.edu hg19 7 77267951 77267951 + Silent SNP G G T novel TCGA-HE-7129-01A-11D-1961-08 TCGA-HE-7129-10A-01D-1962-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c56f3efb-5a25-4967-b817-44b1eb9f440a 3c6e3907-3f31-4a91-825b-87070d603395 . PTPN12 NM_002835 exon17 c.G2184T p.A728A TCCAGCGGGAGGT . 328.0 14.0 178.0 0.0 . 83 . . . none . . PASS Atlas-SNP ZKSCAN1 7586 hgsc.bcm.edu hg19 7 99621201 99621201 + Silent SNP A A G novel TCGA-HE-7129-01A-11D-1961-08 TCGA-HE-7129-10A-01D-1962-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c56f3efb-5a25-4967-b817-44b1eb9f440a 3c6e3907-3f31-4a91-825b-87070d603395 . ZKSCAN1 NM_003439 exon2 c.A72G p.V24V TATCGTAATAGTG . 191.0 48.0 121.0 0.0 . 59 . . . none . . PASS Atlas-SNP CNTNAP2 26047 hgsc.bcm.edu hg19 7 147336337 147336337 + Silent SNP C C A novel TCGA-HE-7129-01A-11D-1961-08 TCGA-HE-7129-10A-01D-1962-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c56f3efb-5a25-4967-b817-44b1eb9f440a 3c6e3907-3f31-4a91-825b-87070d603395 . CNTNAP2 NM_014141 exon13 c.C2037A p.A679A CAGTGCCGAGTAC . 154.0 8.0 84.0 0.0 . 392 . . . none . . PASS Atlas-SNP C7orf29 113763 hgsc.bcm.edu hg19 7 150027695 150027695 + Missense_Mutation SNP C C A novel TCGA-HE-7129-01A-11D-1961-08 TCGA-HE-7129-10A-01D-1962-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c56f3efb-5a25-4967-b817-44b1eb9f440a 3c6e3907-3f31-4a91-825b-87070d603395 . C7orf29 NM_138434 exon1 c.C202A p.R68S TTCTACCGCGAGG . 239.0 11.0 185.0 0.0 . 18 . . . none . . PASS Atlas-SNP ASB10 136371 hgsc.bcm.edu hg19 7 150878302 150878302 + Silent SNP C C G novel TCGA-HE-7129-01A-11D-1961-08 TCGA-HE-7129-10A-01D-1962-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c56f3efb-5a25-4967-b817-44b1eb9f440a 3c6e3907-3f31-4a91-825b-87070d603395 . ASB10 NM_001142459 exon3 c.G828C p.L276L GCTGCACAGCTGC . 64.0 17.0 45.0 0.0 . 99 . . . none . . PASS Atlas-SNP ST18 9705 hgsc.bcm.edu hg19 8 53077711 53077711 + Missense_Mutation SNP G G T novel TCGA-HE-7129-01A-11D-1961-08 TCGA-HE-7129-10A-01D-1962-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c56f3efb-5a25-4967-b817-44b1eb9f440a 3c6e3907-3f31-4a91-825b-87070d603395 . ST18 NM_014682 exon12 c.C1279A p.R427S TGTTGCGGTTGCT . 320.0 15.0 339.0 0.0 . 212 . . . none . . PASS Atlas-SNP WISP1 8840 hgsc.bcm.edu hg19 8 134225321 134225321 + Missense_Mutation SNP C C T novel TCGA-HE-7129-01A-11D-1961-08 TCGA-HE-7129-10A-01D-1962-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c56f3efb-5a25-4967-b817-44b1eb9f440a 3c6e3907-3f31-4a91-825b-87070d603395 . WISP1 NM_003882 exon2 c.C284T p.P95L GTGACCCCCACCG . 82.0 41.0 141.0 0.0 . 64 . . . none . . PASS Atlas-SNP SLC35D2 11046 hgsc.bcm.edu hg19 9 99106263 99106263 + Nonsense_Mutation SNP C C A novel TCGA-HE-7129-01A-11D-1961-08 TCGA-HE-7129-10A-01D-1962-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c56f3efb-5a25-4967-b817-44b1eb9f440a 3c6e3907-3f31-4a91-825b-87070d603395 SLC35D2,rectum,carcinoma,0,1 SLC35D2 NM_007001 exon8 c.G607T p.G203X GTACTCCGTATTT . 225.0 9.0 187.0 0.0 . 20 . . . none . . PASS Atlas-SNP COL27A1 85301 hgsc.bcm.edu hg19 9 117047026 117047026 + Missense_Mutation SNP C C G novel TCGA-HE-7129-01A-11D-1961-08 TCGA-HE-7129-10A-01D-1962-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c56f3efb-5a25-4967-b817-44b1eb9f440a 3c6e3907-3f31-4a91-825b-87070d603395 COL27A1,NS,carcinoma,0,1 COL27A1 NM_032888 exon41 c.C3956G p.P1319R TGGGACCCCTTGG . 98.0 35.0 138.0 0.0 . 200 . . . none . . PASS Atlas-SNP AP3M1 26985 hgsc.bcm.edu hg19 10 75898090 75898090 + Silent SNP T T C rs147488745 alternate_allele TCGA-HE-7129-01A-11D-1961-08 TCGA-HE-7129-10A-01D-1962-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c56f3efb-5a25-4967-b817-44b1eb9f440a 3c6e3907-3f31-4a91-825b-87070d603395 . AP3M1 NM_207012 exon3 c.A48G p.L16L CTTCTCTAGAAAT . 93.0 50.0 71.0 0.0 . 28 . . . alt T|1.000;G|0.000 . PASS Atlas-SNP PDE6C 5146 hgsc.bcm.edu hg19 10 95380726 95380726 + Silent SNP C C A novel TCGA-HE-7129-01A-11D-1961-08 TCGA-HE-7129-10A-01D-1962-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c56f3efb-5a25-4967-b817-44b1eb9f440a 3c6e3907-3f31-4a91-825b-87070d603395 . PDE6C NM_006204 exon3 c.C712A p.R238R GAATCCCGAAGAA . 408.0 17.0 465.0 0.0 . 97 . . . none . . PASS Atlas-SNP OR8I2 120586 hgsc.bcm.edu hg19 11 55861472 55861472 + Missense_Mutation SNP C C G novel TCGA-HE-7129-01A-11D-1961-08 TCGA-HE-7129-10A-01D-1962-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c56f3efb-5a25-4967-b817-44b1eb9f440a 3c6e3907-3f31-4a91-825b-87070d603395 OR8I2,NS,carcinoma,0,1 OR8I2 NM_001003750 exon1 c.C689G p.A230G AGTCAGCAGCAGG . 91.0 26.0 101.0 0.0 . 119 . . . none . . PASS Atlas-SNP DSCAML1 57453 hgsc.bcm.edu hg19 11 117375681 117375681 + Missense_Mutation SNP C C T novel TCGA-HE-7129-01A-11D-1961-08 TCGA-HE-7129-10A-01D-1962-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c56f3efb-5a25-4967-b817-44b1eb9f440a 3c6e3907-3f31-4a91-825b-87070d603395 . DSCAML1 NM_020693 exon10 c.G2320A p.D774N AGCCGTCCACCGA . 67.0 27.0 102.0 0.0 . 286 . . . none . . PASS Atlas-SNP LIMA1 51474 hgsc.bcm.edu hg19 12 50571511 50571511 + Missense_Mutation SNP C C G novel TCGA-HE-7129-01A-11D-1961-08 TCGA-HE-7129-10A-01D-1962-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c56f3efb-5a25-4967-b817-44b1eb9f440a 3c6e3907-3f31-4a91-825b-87070d603395 . LIMA1 NM_001113546 exon11 c.G1619C p.G540A GAACTTCCAAGTT . 193.0 89.0 213.0 0.0 . 67 . . . none . . PASS Atlas-SNP LAMP1 3916 hgsc.bcm.edu hg19 13 113964011 113964011 + Silent SNP C C T novel TCGA-HE-7129-01A-11D-1961-08 TCGA-HE-7129-10A-01D-1962-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c56f3efb-5a25-4967-b817-44b1eb9f440a 3c6e3907-3f31-4a91-825b-87070d603395 . LAMP1 NM_005561 exon3 c.C237T p.S79S CAGCTCCTGTGGA . 117.0 64.0 116.0 0.0 . 41 . . . none . . PASS Atlas-SNP BAZ1A 11177 hgsc.bcm.edu hg19 14 35242930 35242930 + Silent SNP A A G novel TCGA-HE-7129-01A-11D-1961-08 TCGA-HE-7129-10A-01D-1962-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c56f3efb-5a25-4967-b817-44b1eb9f440a 3c6e3907-3f31-4a91-825b-87070d603395 . BAZ1A NM_013448 exon20 c.T3000C p.V1000V ATCTGTAACCTGT . 46.0 26.0 43.0 0.0 . 128 . . . none . . PASS Atlas-SNP FANCM 57697 hgsc.bcm.edu hg19 14 45636324 45636324 + Silent SNP C C A rs112784867 bycluster;byfrequency;alternate_allele TCGA-HE-7129-01A-11D-1961-08 TCGA-HE-7129-10A-01D-1962-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c56f3efb-5a25-4967-b817-44b1eb9f440a 3c6e3907-3f31-4a91-825b-87070d603395 . FANCM NM_020937 exon11 c.C1960A p.R654R CCTTCTCGGAACT . 127.0 10.0 118.0 0.0 . 225 . . . alt C|0.999;T|0.001 . PASS Atlas-SNP ESR2 2100 hgsc.bcm.edu hg19 14 64746749 64746749 + Missense_Mutation SNP C C G novel TCGA-HE-7129-01A-11D-1961-08 TCGA-HE-7129-10A-01D-1962-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c56f3efb-5a25-4967-b817-44b1eb9f440a 3c6e3907-3f31-4a91-825b-87070d603395 . ESR2 NM_001214902 exon2 c.G485C p.G162A CAGACTCCATAGT . 345.0 152.0 426.0 1.0 . 82 . . . none . . PASS Atlas-SNP CYP46A1 10858 hgsc.bcm.edu hg19 14 100165848 100165848 + Missense_Mutation SNP C C A novel TCGA-HE-7129-01A-11D-1961-08 TCGA-HE-7129-10A-01D-1962-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c56f3efb-5a25-4967-b817-44b1eb9f440a 3c6e3907-3f31-4a91-825b-87070d603395 . CYP46A1 NM_006668 exon4 c.C328A p.R110S ATGTACCGTGCGC . 299.0 12.0 404.0 0.0 . 62 . . . none . . PASS Atlas-SNP CCP110 9738 hgsc.bcm.edu hg19 16 19548870 19548870 + Missense_Mutation SNP T T A novel TCGA-HE-7129-01A-11D-1961-08 TCGA-HE-7129-10A-01D-1962-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c56f3efb-5a25-4967-b817-44b1eb9f440a 3c6e3907-3f31-4a91-825b-87070d603395 . CCP110 NM_001199022 exon4 c.T1879A p.F627I TCTGGCTTCGTTA . 62.0 25.0 51.0 0.0 . 57 . . . none . . PASS Atlas-SNP TNRC6A 27327 hgsc.bcm.edu hg19 16 24826534 24826534 + Missense_Mutation SNP G G A novel TCGA-HE-7129-01A-11D-1961-08 TCGA-HE-7129-10A-01D-1962-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c56f3efb-5a25-4967-b817-44b1eb9f440a 3c6e3907-3f31-4a91-825b-87070d603395 . TNRC6A NM_014494 exon19 c.G4739A p.S1580N ACAGCAGTACTTC . 136.0 36.0 93.0 0.0 . 171 . . . none . . PASS Atlas-SNP CNOT1 23019 hgsc.bcm.edu hg19 16 58585134 58585134 + Missense_Mutation SNP T T C novel TCGA-HE-7129-01A-11D-1961-08 TCGA-HE-7129-10A-01D-1962-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c56f3efb-5a25-4967-b817-44b1eb9f440a 3c6e3907-3f31-4a91-825b-87070d603395 . CNOT1 NM_206999 exon24 c.A3244G p.T1082A GATCTGTGGCCAC . 464.0 292.0 226.0 0.0 . 359 . . . none . . PASS Atlas-SNP LASP1 3927 hgsc.bcm.edu hg19 17 37074921 37074921 + Missense_Mutation SNP G G T novel TCGA-HE-7129-01A-11D-1961-08 TCGA-HE-7129-10A-01D-1962-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c56f3efb-5a25-4967-b817-44b1eb9f440a 3c6e3907-3f31-4a91-825b-87070d603395 . LASP1 NM_006148 exon7 c.G676T p.G226W CAGGACGGGGACA . 205.0 9.0 182.0 0.0 . 24 . . . none . . PASS Atlas-SNP MED24 9862 hgsc.bcm.edu hg19 17 38182477 38182477 + Silent SNP C C T novel TCGA-HE-7129-01A-11D-1961-08 TCGA-HE-7129-10A-01D-1962-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c56f3efb-5a25-4967-b817-44b1eb9f440a 3c6e3907-3f31-4a91-825b-87070d603395 . MED24 NM_014815 exon19 c.G1917A p.S639S CTGCAGCGACTTC . 200.0 45.0 203.0 0.0 . 89 . . . none . . PASS Atlas-SNP STAT5A 6776 hgsc.bcm.edu hg19 17 40459443 40459443 + Nonsense_Mutation SNP C C A novel TCGA-HE-7129-01A-11D-1961-08 TCGA-HE-7129-10A-01D-1962-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c56f3efb-5a25-4967-b817-44b1eb9f440a 3c6e3907-3f31-4a91-825b-87070d603395 . STAT5A NM_003152 exon15 c.C1704A p.Y568X GAACTACACCTTC . 46.0 7.0 40.0 0.0 . 49 . . . none . . PASS Atlas-SNP RND2 8153 hgsc.bcm.edu hg19 17 41180503 41180503 + Silent SNP C C A novel TCGA-HE-7129-01A-11D-1961-08 TCGA-HE-7129-10A-01D-1962-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c56f3efb-5a25-4967-b817-44b1eb9f440a 3c6e3907-3f31-4a91-825b-87070d603395 . RND2 NM_005440 exon5 c.C490A p.R164R TCCTCCCGGTCCT . 170.0 12.0 136.0 0.0 . 10 . . . none . . PASS Atlas-SNP ITGB3 3690 hgsc.bcm.edu hg19 17 45369560 45369560 + Missense_Mutation SNP C C T novel TCGA-HE-7129-01A-11D-1961-08 TCGA-HE-7129-10A-01D-1962-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c56f3efb-5a25-4967-b817-44b1eb9f440a 3c6e3907-3f31-4a91-825b-87070d603395 . ITGB3 NM_000212 exon10 c.C1316T p.S439F AGAAGTCCTTTAC . 104.0 67.0 108.0 0.0 . 157 . . . none . . PASS Atlas-SNP HSF5 124535 hgsc.bcm.edu hg19 17 56540550 56540550 + Missense_Mutation SNP C C G novel TCGA-HE-7129-01A-11D-1961-08 TCGA-HE-7129-10A-01D-1962-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c56f3efb-5a25-4967-b817-44b1eb9f440a 3c6e3907-3f31-4a91-825b-87070d603395 . HSF5 NM_001080439 exon4 c.G1135C p.V379L CATCAACTATCTG . 227.0 69.0 144.0 0.0 . 51 . . . none . . PASS Atlas-SNP METTL2A 339175 hgsc.bcm.edu hg19 17 60501296 60501296 + Silent SNP A A G novel TCGA-HE-7129-01A-11D-1961-08 TCGA-HE-7129-10A-01D-1962-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c56f3efb-5a25-4967-b817-44b1eb9f440a 3c6e3907-3f31-4a91-825b-87070d603395 . METTL2A NM_181725 exon1 c.A33G p.A11A ACCTGCAGTCCTC . 73.0 24.0 51.0 0.0 . 31 . . . none . . PASS Atlas-SNP CYB561 1534 hgsc.bcm.edu hg19 17 61511913 61511913 + Silent SNP G G A novel TCGA-HE-7129-01A-11D-1961-08 TCGA-HE-7129-10A-01D-1962-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c56f3efb-5a25-4967-b817-44b1eb9f440a 3c6e3907-3f31-4a91-825b-87070d603395 . CYB561 NM_001915 exon6 c.C606T p.N202N CAGCACGTTGGCC . 50.0 33.0 44.0 0.0 . 15 . . . none . . PASS Atlas-SNP ABCA5 23461 hgsc.bcm.edu hg19 17 67303077 67303077 + Missense_Mutation SNP G G A novel TCGA-HE-7129-01A-11D-1961-08 TCGA-HE-7129-10A-01D-1962-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c56f3efb-5a25-4967-b817-44b1eb9f440a 3c6e3907-3f31-4a91-825b-87070d603395 . ABCA5 NM_018672 exon5 c.C577T p.L193F TCCAAAGAGAAAC . 113.0 39.0 63.0 0.0 . 162 . . . none . . PASS Atlas-SNP RIN2 54453 hgsc.bcm.edu hg19 20 19955386 19955386 + Silent SNP C C T novel TCGA-HE-7129-01A-11D-1961-08 TCGA-HE-7129-10A-01D-1962-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c56f3efb-5a25-4967-b817-44b1eb9f440a 3c6e3907-3f31-4a91-825b-87070d603395 . RIN2 NM_001242581 exon8 c.C864T p.S288S TGCCTCCCTGCGT . 68.0 33.0 105.0 0.0 . 126 . . . none . . PASS Atlas-SNP KIAA1211L 343990 hgsc.bcm.edu hg19 2 99413866 99413867 + Frame_Shift_Del DEL GT GT - novel TCGA-HE-7129-01A-11D-1961-08 TCGA-HE-7129-10A-01D-1962-08 GT GT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c56f3efb-5a25-4967-b817-44b1eb9f440a 3c6e3907-3f31-4a91-825b-87070d603395 . . NM_207362 exon8 c.2551_2552del p.851_851del . . 102.0 42.0 181.0 0.0 . . . 0.411765 0 none . . PASS Atlas-INDEL ARID4A 5926 hgsc.bcm.edu hg19 14 58827698 58827698 + Frame_Shift_Del DEL C C - novel TCGA-HE-7129-01A-11D-1961-08 TCGA-HE-7129-10A-01D-1962-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c56f3efb-5a25-4967-b817-44b1eb9f440a 3c6e3907-3f31-4a91-825b-87070d603395 . ARID4A NM_002892 exon19 c.2017delT p.S673fs . . 132.0 59.0 85.0 0.0 . 222 . 0.44697 0 none . . PASS Atlas-INDEL KDM6A 7403 hgsc.bcm.edu hg19 X 44920581 44920581 + Frame_Shift_Del DEL A A - novel TCGA-HE-7129-01A-11D-1961-08 TCGA-HE-7129-10A-01D-1962-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c56f3efb-5a25-4967-b817-44b1eb9f440a 3c6e3907-3f31-4a91-825b-87070d603395 . KDM6A NM_021140 exon14 c.1341delC p.D447fs . . 15.0 14.0 11.0 0.0 . 274 . 0.933333 0 none . . PASS Atlas-INDEL EMD 2010 hgsc.bcm.edu hg19 X 153609241 153609241 + Splice_Site DEL G G - novel TCGA-HE-7129-01A-11D-1961-08 TCGA-HE-7129-10A-01D-1962-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c56f3efb-5a25-4967-b817-44b1eb9f440a 3c6e3907-3f31-4a91-825b-87070d603395 . EMD NM_000117 exon6 c.450-2G>- . . . 45.0 40.0 70.0 0.0 . 25 . 0.888889 0 none . . PASS Atlas-INDEL PDK4 5166 hgsc.bcm.edu hg19 7 95221864 95221872 + In_Frame_Del DEL CCAATGTGG CCAATGTGG - novel TCGA-HE-7129-01A-11D-1961-08 TCGA-HE-7129-10A-01D-1962-08 CCAATGTGG CCAATGTGG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c56f3efb-5a25-4967-b817-44b1eb9f440a 3c6e3907-3f31-4a91-825b-87070d603395 . PDK4 NM_002612 exon5 c.568_576del p.190_192del . . 204.0 78.0 170.0 0.0 . 42 . 0.382353 0 none . . PASS Atlas-INDEL SLC6A4 6532 hgsc.bcm.edu hg19 17 28525539 28525565 + Frame_Shift_Del DEL TAATAATACGCTATTGGGAAGAAAATA TAATAATACGCTATTGGGAAGAAAATA - novel TCGA-HE-7129-01A-11D-1961-08 TCGA-HE-7129-10A-01D-1962-08 TAATAATACGCTATTGGGAAGAAAATA TAATAATACGCTATTGGGAAGAAAATA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c56f3efb-5a25-4967-b817-44b1eb9f440a 3c6e3907-3f31-4a91-825b-87070d603395 . SLC6A4 NM_001045 exon15 c.1819_1829del p.607_610del . . 89.0 18.0 81.0 0.0 . 60 . 0.202247 0 none . . PASS Atlas-INDEL