Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq TVarRat NVarRat dbSNP_Strength dbSNP_AF dbSNP_PopFreq Confidence Algorithm KAZN 23254 hgsc.bcm.edu hg19 1 15428105 15428105 + Silent SNP G G A novel TCGA-GL-A9DE-01A-11D-A36X-10 TCGA-GL-A9DE-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be0270c7-7799-4045-9a8c-3878512a73ef bfa8f265-7a77-40f4-89f4-2102820fcdee . KAZN NM_201628 exon11 c.G1614A p.L538L TGGCCTGTCCCAG . 73.0 28.0 87.0 0.0 . 57 . . . none . . PASS Atlas-SNP SRSF4 6429 hgsc.bcm.edu hg19 1 29475201 29475201 + Silent SNP G G C novel TCGA-GL-A9DE-01A-11D-A36X-10 TCGA-GL-A9DE-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be0270c7-7799-4045-9a8c-3878512a73ef bfa8f265-7a77-40f4-89f4-2102820fcdee . SRSF4 NM_005626 exon6 c.C1206G p.S402S GGACTGGGAGCGG . 71.0 24.0 74.0 0.0 . 44 . . . none . . PASS Atlas-SNP EFCAB14 9813 hgsc.bcm.edu hg19 1 47144277 47144277 + Silent SNP C C T novel TCGA-GL-A9DE-01A-11D-A36X-10 TCGA-GL-A9DE-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be0270c7-7799-4045-9a8c-3878512a73ef bfa8f265-7a77-40f4-89f4-2102820fcdee . . NM_014774 exon11 c.G1344A p.Q448Q CACGTCCTGGCCA . 124.0 57.0 130.0 0.0 . . . . . none . . PASS Atlas-SNP SPATA6 54558 hgsc.bcm.edu hg19 1 48865170 48865170 + Missense_Mutation SNP A A C novel TCGA-GL-A9DE-01A-11D-A36X-10 TCGA-GL-A9DE-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be0270c7-7799-4045-9a8c-3878512a73ef bfa8f265-7a77-40f4-89f4-2102820fcdee . SPATA6 NM_019073 exon7 c.T633G p.I211M TGAAGAAATTGTA . 152.0 58.0 123.0 0.0 . 45 . . . none . . PASS Atlas-SNP CACHD1 57685 hgsc.bcm.edu hg19 1 65107535 65107535 + Missense_Mutation SNP G G T novel TCGA-GL-A9DE-01A-11D-A36X-10 TCGA-GL-A9DE-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be0270c7-7799-4045-9a8c-3878512a73ef bfa8f265-7a77-40f4-89f4-2102820fcdee . CACHD1 NM_020925 exon8 c.G886T p.G296C TCAGCTGGCATTA . 174.0 27.0 134.0 0.0 . 125 . . . none . . PASS Atlas-SNP IGSF3 3321 hgsc.bcm.edu hg19 1 117122158 117122158 + Missense_Mutation SNP G G A novel TCGA-GL-A9DE-01A-11D-A36X-10 TCGA-GL-A9DE-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be0270c7-7799-4045-9a8c-3878512a73ef bfa8f265-7a77-40f4-89f4-2102820fcdee . IGSF3 NM_001542 exon11 c.C3250T p.R1084W TGAGCCGGTAGAG . 90.0 13.0 68.0 0.0 . 294 . . . none . . PASS Atlas-SNP POLR3GL 84265 hgsc.bcm.edu hg19 1 145457964 145457964 + Missense_Mutation SNP G G A novel TCGA-GL-A9DE-01A-11D-A36X-10 TCGA-GL-A9DE-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be0270c7-7799-4045-9a8c-3878512a73ef bfa8f265-7a77-40f4-89f4-2102820fcdee . POLR3GL NM_032305 exon4 c.C296T p.P99L TCAATCGGACCTG . 88.0 34.0 67.0 0.0 . 21 . . . none . . PASS Atlas-SNP CTSK 1513 hgsc.bcm.edu hg19 1 150778422 150778422 + Missense_Mutation SNP G G C novel TCGA-GL-A9DE-01A-11D-A36X-10 TCGA-GL-A9DE-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be0270c7-7799-4045-9a8c-3878512a73ef bfa8f265-7a77-40f4-89f4-2102820fcdee . CTSK NM_000396 exon4 c.C314G p.T105S TAAAGGGTGTCAT . 115.0 47.0 99.0 0.0 . 27 . . . none . . PASS Atlas-SNP TCHH 7062 hgsc.bcm.edu hg19 1 152081020 152081020 + Missense_Mutation SNP C C T novel TCGA-GL-A9DE-01A-11D-A36X-10 TCGA-GL-A9DE-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be0270c7-7799-4045-9a8c-3878512a73ef bfa8f265-7a77-40f4-89f4-2102820fcdee . TCHH NM_007113 exon3 c.G4673A p.R1558H TCCTCGCGGAATT . 79.0 23.0 82.0 0.0 . 275 . . . none . . PASS Atlas-SNP LYST 1130 hgsc.bcm.edu hg19 1 235969849 235969849 + Missense_Mutation SNP C C T novel TCGA-GL-A9DE-01A-11D-A36X-10 TCGA-GL-A9DE-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be0270c7-7799-4045-9a8c-3878512a73ef bfa8f265-7a77-40f4-89f4-2102820fcdee . LYST NM_000081 exon6 c.G2587A p.A863T AATAAGCTTGCTG . 149.0 57.0 116.0 0.0 . 370 . . . none . . PASS Atlas-SNP ZNF695 57116 hgsc.bcm.edu hg19 1 247150413 247150413 + Missense_Mutation SNP T T A novel TCGA-GL-A9DE-01A-11D-A36X-10 TCGA-GL-A9DE-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be0270c7-7799-4045-9a8c-3878512a73ef bfa8f265-7a77-40f4-89f4-2102820fcdee . ZNF695 NM_020394 exon4 c.A1404T p.E468D GCCACATTCTTCA . 99.0 48.0 69.0 0.0 . 55 . . . none . . PASS Atlas-SNP ZNF695 57116 hgsc.bcm.edu hg19 1 247150414 247150414 + Missense_Mutation SNP T T A novel TCGA-GL-A9DE-01A-11D-A36X-10 TCGA-GL-A9DE-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be0270c7-7799-4045-9a8c-3878512a73ef bfa8f265-7a77-40f4-89f4-2102820fcdee . ZNF695 NM_020394 exon4 c.A1403T p.E468V CCACATTCTTCAC . 99.0 48.0 68.0 0.0 . 55 . . . none . . PASS Atlas-SNP LTBP1 4052 hgsc.bcm.edu hg19 2 33525581 33525581 + Missense_Mutation SNP C C A novel TCGA-GL-A9DE-01A-11D-A36X-10 TCGA-GL-A9DE-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be0270c7-7799-4045-9a8c-3878512a73ef bfa8f265-7a77-40f4-89f4-2102820fcdee . LTBP1 NM_206943 exon21 c.C3299A p.S1100Y AGGGCTCCTTCAG . 99.0 36.0 81.0 0.0 . 317 . . . none . . PASS Atlas-SNP ALMS1 7840 hgsc.bcm.edu hg19 2 73613036 73613036 + Missense_Mutation SNP G G C novel TCGA-GL-A9DE-01A-11D-A36X-10 TCGA-GL-A9DE-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be0270c7-7799-4045-9a8c-3878512a73ef bfa8f265-7a77-40f4-89f4-2102820fcdee . ALMS1 NM_015120 exon1 c.G40C p.E14Q CTGGAGGAGGAGG . 314.0 26.0 184.0 0.0 . 384 . . . none . . PASS Atlas-SNP ALMS1 7840 hgsc.bcm.edu hg19 2 73613037 73613037 + Missense_Mutation SNP A A T novel TCGA-GL-A9DE-01A-11D-A36X-10 TCGA-GL-A9DE-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be0270c7-7799-4045-9a8c-3878512a73ef bfa8f265-7a77-40f4-89f4-2102820fcdee . ALMS1 NM_015120 exon1 c.A41T p.E14V TGGAGGAGGAGGA . 321.0 32.0 187.0 0.0 . 384 . . . none . . PASS Atlas-SNP DHRS9 10170 hgsc.bcm.edu hg19 2 169939934 169939934 + Missense_Mutation SNP A A C novel TCGA-GL-A9DE-01A-11D-A36X-10 TCGA-GL-A9DE-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be0270c7-7799-4045-9a8c-3878512a73ef bfa8f265-7a77-40f4-89f4-2102820fcdee . DHRS9 NM_005771 exon6 c.A409C p.N137H GAAGTGAACCTGT . 96.0 12.0 93.0 0.0 . 29 . . . none . . PASS Atlas-SNP MRPL44 65080 hgsc.bcm.edu hg19 2 224824598 224824598 + Missense_Mutation SNP A A G novel TCGA-GL-A9DE-01A-11D-A36X-10 TCGA-GL-A9DE-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be0270c7-7799-4045-9a8c-3878512a73ef bfa8f265-7a77-40f4-89f4-2102820fcdee . MRPL44 NM_022915 exon2 c.A527G p.E176G CTGTGGAGCAGTT . 98.0 33.0 106.0 0.0 . 31 . . . none . . PASS Atlas-SNP ASB18 401036 hgsc.bcm.edu hg19 2 237103670 237103670 + Missense_Mutation SNP C C G novel TCGA-GL-A9DE-01A-11D-A36X-10 TCGA-GL-A9DE-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be0270c7-7799-4045-9a8c-3878512a73ef bfa8f265-7a77-40f4-89f4-2102820fcdee ASB18_ENST00000409749,NS,carcinoma,0,1 ASB18 NM_212556 exon6 c.G1246C p.A416P CCAAGGCAAAGAG . 133.0 58.0 169.0 0.0 . 34 . . . none . . PASS Atlas-SNP IQCA1 79781 hgsc.bcm.edu hg19 2 237240213 237240213 + Missense_Mutation SNP T T C novel TCGA-GL-A9DE-01A-11D-A36X-10 TCGA-GL-A9DE-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be0270c7-7799-4045-9a8c-3878512a73ef bfa8f265-7a77-40f4-89f4-2102820fcdee . IQCA1 NM_001270585 exon18 c.A2186G p.N729S CCTCCATTGCGTT . 73.0 11.0 74.0 0.0 . 170 . . . none . . PASS Atlas-SNP SETD2 29072 hgsc.bcm.edu hg19 3 47058732 47058732 + Missense_Mutation SNP C C T novel TCGA-GL-A9DE-01A-11D-A36X-10 TCGA-GL-A9DE-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be0270c7-7799-4045-9a8c-3878512a73ef bfa8f265-7a77-40f4-89f4-2102820fcdee . SETD2 NM_014159 exon21 c.G7546A p.V2516I TCATAACACCGTG . 72.0 67.0 47.0 0.0 . 721 . . . none . . PASS Atlas-SNP DNAJB8 165721 hgsc.bcm.edu hg19 3 128181520 128181520 + Missense_Mutation SNP T T C novel TCGA-GL-A9DE-01A-11D-A36X-10 TCGA-GL-A9DE-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be0270c7-7799-4045-9a8c-3878512a73ef bfa8f265-7a77-40f4-89f4-2102820fcdee . DNAJB8 NM_153330 exon3 c.A569G p.N190S TGGCCATTGATCA . 87.0 73.0 76.0 0.0 . 34 . . . none . . PASS Atlas-SNP TMCC1 23023 hgsc.bcm.edu hg19 3 129390024 129390024 + Silent SNP A A T novel TCGA-GL-A9DE-01A-11D-A36X-10 TCGA-GL-A9DE-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be0270c7-7799-4045-9a8c-3878512a73ef bfa8f265-7a77-40f4-89f4-2102820fcdee . TMCC1 NM_001017395 exon4 c.T660A p.S220S ATCCACAGAGTCT . 73.0 5.0 53.0 0.0 . 105 . . . none . . PASS Atlas-SNP MUC4 4585 hgsc.bcm.edu hg19 3 195509651 195509651 + Missense_Mutation SNP G G T novel TCGA-GL-A9DE-01A-11D-A36X-10 TCGA-GL-A9DE-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be0270c7-7799-4045-9a8c-3878512a73ef bfa8f265-7a77-40f4-89f4-2102820fcdee MUC4_ENST00000463781,trunk,malignant_melanoma,0,2 MUC4 NM_018406 exon2 c.C8800A p.L2934I AGGAAAGGCTGGT . 133.0 7.0 92.0 0.0 . 1505 . . . none . . PASS Atlas-SNP EVC 2121 hgsc.bcm.edu hg19 4 5812077 5812077 + Silent SNP A A C novel TCGA-GL-A9DE-01A-11D-A36X-10 TCGA-GL-A9DE-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be0270c7-7799-4045-9a8c-3878512a73ef bfa8f265-7a77-40f4-89f4-2102820fcdee . EVC NM_153717 exon20 c.A2794C p.R932R CCCCTAAGGACTA . 226.0 96.0 230.0 0.0 . 90 . . . none . . PASS Atlas-SNP CCNI 10983 hgsc.bcm.edu hg19 4 77969741 77969741 + Silent SNP A A G novel TCGA-GL-A9DE-01A-11D-A36X-10 TCGA-GL-A9DE-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be0270c7-7799-4045-9a8c-3878512a73ef bfa8f265-7a77-40f4-89f4-2102820fcdee . CCNI NM_006835 exon7 c.T765C p.P255P ATTCAGAGGCAGG . 103.0 40.0 70.0 0.0 . 22 . . . none . . PASS Atlas-SNP PTPN13 5783 hgsc.bcm.edu hg19 4 87671752 87671752 + Missense_Mutation SNP T T C novel TCGA-GL-A9DE-01A-11D-A36X-10 TCGA-GL-A9DE-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be0270c7-7799-4045-9a8c-3878512a73ef bfa8f265-7a77-40f4-89f4-2102820fcdee . PTPN13 NM_006264 exon18 c.T2780C p.V927A TATCAGTTCAAGC . 296.0 127.0 247.0 1.0 . 203 . . . none . . PASS Atlas-SNP KIAA1109 84162 hgsc.bcm.edu hg19 4 123226024 123226024 + Missense_Mutation SNP A A C novel TCGA-GL-A9DE-01A-11D-A36X-10 TCGA-GL-A9DE-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be0270c7-7799-4045-9a8c-3878512a73ef bfa8f265-7a77-40f4-89f4-2102820fcdee . KIAA1109 NM_015312 exon54 c.A9558C p.E3186D ACTGGAACTTTCT . 115.0 49.0 121.0 0.0 . 424 . . . none . . PASS Atlas-SNP ANXA10 11199 hgsc.bcm.edu hg19 4 169099042 169099042 + Missense_Mutation SNP T T C novel TCGA-GL-A9DE-01A-11D-A36X-10 TCGA-GL-A9DE-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be0270c7-7799-4045-9a8c-3878512a73ef bfa8f265-7a77-40f4-89f4-2102820fcdee . ANXA10 NM_007193 exon8 c.T536C p.V179A TCCAGGTCCTATG . 124.0 21.0 83.0 0.0 . 44 . . . none . . PASS Atlas-SNP MCC 4163 hgsc.bcm.edu hg19 5 112399744 112399744 + Missense_Mutation SNP G G C rs147869500 alternate_allele TCGA-GL-A9DE-01A-11D-A36X-10 TCGA-GL-A9DE-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be0270c7-7799-4045-9a8c-3878512a73ef bfa8f265-7a77-40f4-89f4-2102820fcdee . MCC NM_001085377 exon14 c.C2150G p.A717G GCAAAGGCTCCCC . 150.0 67.0 150.0 0.0 . 234 . . . alt G|1.000;A|0.000 . PASS Atlas-SNP SNCAIP 9627 hgsc.bcm.edu hg19 5 121786598 121786598 + Nonsense_Mutation SNP G G T novel TCGA-GL-A9DE-01A-11D-A36X-10 TCGA-GL-A9DE-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be0270c7-7799-4045-9a8c-3878512a73ef bfa8f265-7a77-40f4-89f4-2102820fcdee . SNCAIP NM_005460 exon10 c.G2056T p.E686X AACTCTGAGGACC . 83.0 37.0 83.0 0.0 . 308 . . . none . . PASS Atlas-SNP RNF14 9604 hgsc.bcm.edu hg19 5 141354465 141354465 + Missense_Mutation SNP C C A novel TCGA-GL-A9DE-01A-11D-A36X-10 TCGA-GL-A9DE-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be0270c7-7799-4045-9a8c-3878512a73ef bfa8f265-7a77-40f4-89f4-2102820fcdee . RNF14 NM_001201365 exon4 c.C251A p.P84Q ATTATCCATCCTC . 102.0 57.0 89.0 0.0 . 30 . . . none . . PASS Atlas-SNP FOXQ1 94234 hgsc.bcm.edu hg19 6 1313368 1313368 + Silent SNP G G T novel TCGA-GL-A9DE-01A-11D-A36X-10 TCGA-GL-A9DE-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be0270c7-7799-4045-9a8c-3878512a73ef bfa8f265-7a77-40f4-89f4-2102820fcdee . FOXQ1 NM_033260 exon1 c.G429T p.A143A GCTGGCGGAGATC . 110.0 43.0 82.0 0.0 . 8 . . . none . . PASS Atlas-SNP RIOK1 83732 hgsc.bcm.edu hg19 6 7395375 7395375 + Silent SNP A A G novel TCGA-GL-A9DE-01A-11D-A36X-10 TCGA-GL-A9DE-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be0270c7-7799-4045-9a8c-3878512a73ef bfa8f265-7a77-40f4-89f4-2102820fcdee . RIOK1 NM_031480 exon3 c.A366G p.L122L TAATTTAGGTGAG . 240.0 90.0 193.0 0.0 . 36 . . . none . . PASS Atlas-SNP KIAA0408 9729 hgsc.bcm.edu hg19 6 127767703 127767703 + Missense_Mutation SNP A A C novel TCGA-GL-A9DE-01A-11D-A36X-10 TCGA-GL-A9DE-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be0270c7-7799-4045-9a8c-3878512a73ef bfa8f265-7a77-40f4-89f4-2102820fcdee . KIAA0408 NM_014702 exon5 c.T1761G p.N587K GGTCCAATTATCC . 73.0 30.0 52.0 0.0 . 61 . . . none . . PASS Atlas-SNP GPNMB 10457 hgsc.bcm.edu hg19 7 23300201 23300201 + Missense_Mutation SNP A A G novel TCGA-GL-A9DE-01A-11D-A36X-10 TCGA-GL-A9DE-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be0270c7-7799-4045-9a8c-3878512a73ef bfa8f265-7a77-40f4-89f4-2102820fcdee . GPNMB NM_002510 exon6 c.A827G p.Y276C TCAATTATTCTAC . 94.0 40.0 91.0 0.0 . 88 . . . none . . PASS Atlas-SNP BAZ1B 9031 hgsc.bcm.edu hg19 7 72883924 72883924 + Missense_Mutation SNP T T C novel TCGA-GL-A9DE-01A-11D-A36X-10 TCGA-GL-A9DE-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be0270c7-7799-4045-9a8c-3878512a73ef bfa8f265-7a77-40f4-89f4-2102820fcdee . BAZ1B NM_032408 exon9 c.A2789G p.H930R CTGTCATGTACCC . 84.0 30.0 78.0 0.0 . 147 . . . none . . PASS Atlas-SNP PCLO 27445 hgsc.bcm.edu hg19 7 82544242 82544242 + Missense_Mutation SNP C C A novel TCGA-GL-A9DE-01A-11D-A36X-10 TCGA-GL-A9DE-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be0270c7-7799-4045-9a8c-3878512a73ef bfa8f265-7a77-40f4-89f4-2102820fcdee . PCLO NM_014510 exon7 c.G13060T p.V4354L GGGCCACAATTGG . 95.0 40.0 89.0 0.0 . 1506 . . . none . . PASS Atlas-SNP TMEM176A 55365 hgsc.bcm.edu hg19 7 150499366 150499366 + Missense_Mutation SNP T T C novel TCGA-GL-A9DE-01A-11D-A36X-10 TCGA-GL-A9DE-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be0270c7-7799-4045-9a8c-3878512a73ef bfa8f265-7a77-40f4-89f4-2102820fcdee . TMEM176A NM_018487 exon3 c.T238C p.Y80H CGCGACTACACCC . 49.0 21.0 36.0 0.0 . 35 . . . none . . PASS Atlas-SNP CCDC25 55246 hgsc.bcm.edu hg19 8 27605752 27605752 + Missense_Mutation SNP G G C novel TCGA-GL-A9DE-01A-11D-A36X-10 TCGA-GL-A9DE-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be0270c7-7799-4045-9a8c-3878512a73ef bfa8f265-7a77-40f4-89f4-2102820fcdee . CCDC25 NM_018246 exon7 c.C393G p.N131K TAATCGGTTCAGG . 83.0 4.0 82.0 0.0 . 14 . . . none . . PASS Atlas-SNP ATP6V1H 51606 hgsc.bcm.edu hg19 8 54628574 54628574 + Missense_Mutation SNP C C G novel TCGA-GL-A9DE-01A-11D-A36X-10 TCGA-GL-A9DE-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be0270c7-7799-4045-9a8c-3878512a73ef bfa8f265-7a77-40f4-89f4-2102820fcdee . ATP6V1H NM_015941 exon14 c.G1402C p.G468R GCTTGCCAAGGTA . 162.0 57.0 191.0 0.0 . 66 . . . none . . PASS Atlas-SNP SNX16 64089 hgsc.bcm.edu hg19 8 82751914 82751914 + Missense_Mutation SNP C C G novel TCGA-GL-A9DE-01A-11D-A36X-10 TCGA-GL-A9DE-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be0270c7-7799-4045-9a8c-3878512a73ef bfa8f265-7a77-40f4-89f4-2102820fcdee . SNX16 NM_152836 exon2 c.G308C p.W103S TCTTCCCAATTCA . 78.0 33.0 85.0 0.0 . 21 . . . none . . PASS Atlas-SNP ZNF251 90987 hgsc.bcm.edu hg19 8 145947779 145947779 + Silent SNP T T C novel TCGA-GL-A9DE-01A-11D-A36X-10 TCGA-GL-A9DE-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be0270c7-7799-4045-9a8c-3878512a73ef bfa8f265-7a77-40f4-89f4-2102820fcdee . ZNF251 NM_138367 exon5 c.A1266G p.E422E TACGTGTTCAGTA . 89.0 18.0 74.0 0.0 . 80 . . . none . . PASS Atlas-SNP RPL35 11224 hgsc.bcm.edu hg19 9 127622502 127622502 + Missense_Mutation SNP A A G novel TCGA-GL-A9DE-01A-11D-A36X-10 TCGA-GL-A9DE-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be0270c7-7799-4045-9a8c-3878512a73ef bfa8f265-7a77-40f4-89f4-2102820fcdee . RPL35 NM_007209 exon3 c.T182C p.I61T TGGTTAATAACTG . 92.0 37.0 66.0 0.0 . 11 . . . none . . PASS Atlas-SNP LAMC3 10319 hgsc.bcm.edu hg19 9 133901739 133901739 + Silent SNP C C A novel TCGA-GL-A9DE-01A-11D-A36X-10 TCGA-GL-A9DE-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be0270c7-7799-4045-9a8c-3878512a73ef bfa8f265-7a77-40f4-89f4-2102820fcdee . LAMC3 NM_006059 exon2 c.C441A p.I147I TGCCATCTACAAG . 137.0 53.0 146.0 0.0 . 167 . . . none . . PASS Atlas-SNP DIP2C 22982 hgsc.bcm.edu hg19 10 327182 327182 + Missense_Mutation SNP A A C novel TCGA-GL-A9DE-01A-11D-A36X-10 TCGA-GL-A9DE-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be0270c7-7799-4045-9a8c-3878512a73ef bfa8f265-7a77-40f4-89f4-2102820fcdee . DIP2C NM_014974 exon36 c.T4376G p.I1459S GTCTCAATGTCGA . 84.0 39.0 74.0 0.0 . 195 . . . none . . PASS Atlas-SNP C10orf67 256815 hgsc.bcm.edu hg19 10 23622020 23622020 + Silent SNP A A G novel TCGA-GL-A9DE-01A-11D-A36X-10 TCGA-GL-A9DE-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be0270c7-7799-4045-9a8c-3878512a73ef bfa8f265-7a77-40f4-89f4-2102820fcdee C10orf67,NS,carcinoma,0,1 C10orf67 NM_153714 exon2 c.T301C p.L101L AACTCAATTCTTT . 136.0 61.0 115.0 0.0 . 21 . . . none . . PASS Atlas-SNP WAC 51322 hgsc.bcm.edu hg19 10 28906628 28906628 + Missense_Mutation SNP C C G novel TCGA-GL-A9DE-01A-11D-A36X-10 TCGA-GL-A9DE-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be0270c7-7799-4045-9a8c-3878512a73ef bfa8f265-7a77-40f4-89f4-2102820fcdee . WAC NM_016628 exon13 c.C1789G p.H597D ACTATTCACATGT . 240.0 105.0 264.0 0.0 . 77 . . . none . . PASS Atlas-SNP CUEDC2 79004 hgsc.bcm.edu hg19 10 104184908 104184908 + Missense_Mutation SNP G G A novel TCGA-GL-A9DE-01A-11D-A36X-10 TCGA-GL-A9DE-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be0270c7-7799-4045-9a8c-3878512a73ef bfa8f265-7a77-40f4-89f4-2102820fcdee . CUEDC2 NM_024040 exon2 c.C38T p.A13V ACAAAGGCAAGGA . 35.0 13.0 16.0 0.0 . 22 . . . none . . PASS Atlas-SNP COL17A1 1308 hgsc.bcm.edu hg19 10 105793812 105793812 + Silent SNP T T A novel TCGA-GL-A9DE-01A-11D-A36X-10 TCGA-GL-A9DE-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be0270c7-7799-4045-9a8c-3878512a73ef bfa8f265-7a77-40f4-89f4-2102820fcdee . COL17A1 NM_000494 exon52 c.A4047T p.A1349A TGCTGCTGCCCCA . 258.0 98.0 212.0 0.0 . 149 . . . none . . PASS Atlas-SNP RRM1 6240 hgsc.bcm.edu hg19 11 4144483 4144483 + Nonsense_Mutation SNP C C T novel TCGA-GL-A9DE-01A-11D-A36X-10 TCGA-GL-A9DE-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be0270c7-7799-4045-9a8c-3878512a73ef bfa8f265-7a77-40f4-89f4-2102820fcdee . RRM1 NM_001033 exon12 c.C1189T p.Q397X GAGTCTCAGACGG . 217.0 98.0 169.0 0.0 . 31 . . . none . . PASS Atlas-SNP TRIM3 10612 hgsc.bcm.edu hg19 11 6470304 6470304 + Missense_Mutation SNP G G T novel TCGA-GL-A9DE-01A-11D-A36X-10 TCGA-GL-A9DE-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be0270c7-7799-4045-9a8c-3878512a73ef bfa8f265-7a77-40f4-89f4-2102820fcdee . TRIM3 NM_001248006 exon12 c.C2189A p.A730D GCATCAGCCACCA . 95.0 5.0 63.0 0.0 . 67 . . . none . . PASS Atlas-SNP HPS5 11234 hgsc.bcm.edu hg19 11 18333543 18333543 + Missense_Mutation SNP C C A novel TCGA-GL-A9DE-01A-11D-A36X-10 TCGA-GL-A9DE-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be0270c7-7799-4045-9a8c-3878512a73ef bfa8f265-7a77-40f4-89f4-2102820fcdee . HPS5 NM_181507 exon3 c.G137T p.W46L GCCAACCATTTCC . 82.0 35.0 86.0 0.0 . 70 . . . none . . PASS Atlas-SNP SLC3A2 6520 hgsc.bcm.edu hg19 11 62652107 62652107 + Missense_Mutation SNP G G A novel TCGA-GL-A9DE-01A-11D-A36X-10 TCGA-GL-A9DE-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be0270c7-7799-4045-9a8c-3878512a73ef bfa8f265-7a77-40f4-89f4-2102820fcdee . SLC3A2 NM_001012662 exon8 c.G1069A p.A357T TAGGATGCATCCT . 67.0 25.0 85.0 0.0 . 55 . . . none . . PASS Atlas-SNP SLC3A2 6520 hgsc.bcm.edu hg19 11 62652108 62652108 + Missense_Mutation SNP C C T novel TCGA-GL-A9DE-01A-11D-A36X-10 TCGA-GL-A9DE-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be0270c7-7799-4045-9a8c-3878512a73ef bfa8f265-7a77-40f4-89f4-2102820fcdee . SLC3A2 NM_001012662 exon8 c.C1070T p.A357V AGGATGCATCCTC . 69.0 25.0 83.0 0.0 . 55 . . . none . . PASS Atlas-SNP NUMA1 4926 hgsc.bcm.edu hg19 11 71720100 71720100 + Silent SNP A A G novel TCGA-GL-A9DE-01A-11D-A36X-10 TCGA-GL-A9DE-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be0270c7-7799-4045-9a8c-3878512a73ef bfa8f265-7a77-40f4-89f4-2102820fcdee . NUMA1 NM_006185 exon19 c.T4971C p.H1657H TAGCTCATGGCCC . 59.0 27.0 49.0 0.0 . 142 . . . none . . PASS Atlas-SNP INPPL1 3636 hgsc.bcm.edu hg19 11 71942228 71942228 + Missense_Mutation SNP C C T novel TCGA-GL-A9DE-01A-11D-A36X-10 TCGA-GL-A9DE-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be0270c7-7799-4045-9a8c-3878512a73ef bfa8f265-7a77-40f4-89f4-2102820fcdee . INPPL1 NM_001567 exon12 c.C1492T p.R498C GATTACCGCCCGG . 36.0 16.0 31.0 0.0 . 120 . . . none . . PASS Atlas-SNP RAB6A 5870 hgsc.bcm.edu hg19 11 73471628 73471628 + Missense_Mutation SNP A A T novel TCGA-GL-A9DE-01A-11D-A36X-10 TCGA-GL-A9DE-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be0270c7-7799-4045-9a8c-3878512a73ef bfa8f265-7a77-40f4-89f4-2102820fcdee . RAB6A NM_002869 exon1 c.T53A p.F18Y CCCAGGAACACCA . 248.0 99.0 226.0 0.0 . 17 . . . none . . PASS Atlas-SNP C2CD3 26005 hgsc.bcm.edu hg19 11 73850650 73850650 + Missense_Mutation SNP C C G novel TCGA-GL-A9DE-01A-11D-A36X-10 TCGA-GL-A9DE-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be0270c7-7799-4045-9a8c-3878512a73ef bfa8f265-7a77-40f4-89f4-2102820fcdee . C2CD3 NM_015531 exon4 c.G707C p.R236T AATTACCTCGGAG . 84.0 23.0 91.0 0.0 . 288 . . . none . . PASS Atlas-SNP FUT4 2526 hgsc.bcm.edu hg19 11 94277973 94277973 + Missense_Mutation SNP A A T novel TCGA-GL-A9DE-01A-11D-A36X-10 TCGA-GL-A9DE-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be0270c7-7799-4045-9a8c-3878512a73ef bfa8f265-7a77-40f4-89f4-2102820fcdee . FUT4 NM_002033 exon1 c.A674T p.D225V TCACCGACCGCGC . 32.0 14.0 53.0 0.0 . 17 . . . none . . PASS Atlas-SNP MLL 4297 hgsc.bcm.edu hg19 11 118390700 118390700 + Missense_Mutation SNP C C G novel TCGA-GL-A9DE-01A-11D-A36X-10 TCGA-GL-A9DE-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be0270c7-7799-4045-9a8c-3878512a73ef bfa8f265-7a77-40f4-89f4-2102820fcdee . MLL NM_001197104 exon33 c.C11350G p.L3784V AACTTCCTGGCTT . 66.0 38.0 42.0 0.0 . 548 . . . none . . PASS Atlas-SNP CLEC4C 170482 hgsc.bcm.edu hg19 12 7890038 7890038 + Missense_Mutation SNP G G C novel TCGA-GL-A9DE-01A-11D-A36X-10 TCGA-GL-A9DE-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be0270c7-7799-4045-9a8c-3878512a73ef bfa8f265-7a77-40f4-89f4-2102820fcdee . CLEC4C NM_130441 exon5 c.C368G p.T123S TCCCTGGTGTTGA . 53.0 19.0 53.0 0.0 . 44 . . . none . . PASS Atlas-SNP RASSF3 283349 hgsc.bcm.edu hg19 12 65078565 65078565 + Splice_Site SNP A A C novel TCGA-GL-A9DE-01A-11D-A36X-10 TCGA-GL-A9DE-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be0270c7-7799-4045-9a8c-3878512a73ef bfa8f265-7a77-40f4-89f4-2102820fcdee . RASSF3 NM_178169 exon2 c.112-2A>C . TCTTCTAGGATGT . 65.0 30.0 71.0 0.0 . 18 . . . none . . PASS Atlas-SNP RAB21 23011 hgsc.bcm.edu hg19 12 72176413 72176413 + Silent SNP G G A novel TCGA-GL-A9DE-01A-11D-A36X-10 TCGA-GL-A9DE-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be0270c7-7799-4045-9a8c-3878512a73ef bfa8f265-7a77-40f4-89f4-2102820fcdee . RAB21 NM_014999 exon6 c.G510A p.E170E AATTGAGGAACTC . 201.0 88.0 174.0 0.0 . 17 . . . none . . PASS Atlas-SNP GALNT4 8693 hgsc.bcm.edu hg19 12 89917333 89917333 + Missense_Mutation SNP C C T novel TCGA-GL-A9DE-01A-11D-A36X-10 TCGA-GL-A9DE-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be0270c7-7799-4045-9a8c-3878512a73ef bfa8f265-7a77-40f4-89f4-2102820fcdee . GALNT4 NM_003774 exon1 c.G994A p.E332K ACACTTCCATTCC . 101.0 37.0 106.0 0.0 . 38 . . . none . . PASS Atlas-SNP MYBPC1 4604 hgsc.bcm.edu hg19 12 102043137 102043137 + Missense_Mutation SNP G G C novel TCGA-GL-A9DE-01A-11D-A36X-10 TCGA-GL-A9DE-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be0270c7-7799-4045-9a8c-3878512a73ef bfa8f265-7a77-40f4-89f4-2102820fcdee . MYBPC1 NM_206819 exon15 c.G1296C p.K432N AACAAAGGCTGAT . 100.0 41.0 83.0 0.0 . 235 . . . none . . PASS Atlas-SNP AMER2 219287 hgsc.bcm.edu hg19 13 25744451 25744451 + Missense_Mutation SNP A A T novel TCGA-GL-A9DE-01A-11D-A36X-10 TCGA-GL-A9DE-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be0270c7-7799-4045-9a8c-3878512a73ef bfa8f265-7a77-40f4-89f4-2102820fcdee . . NM_152704 exon1 c.T1307A p.L436Q TCCTGTAGATAGG . 65.0 36.0 48.0 0.0 . . . . . none . . PASS Atlas-SNP FRY 10129 hgsc.bcm.edu hg19 13 32705963 32705963 + Missense_Mutation SNP C C T novel TCGA-GL-A9DE-01A-11D-A36X-10 TCGA-GL-A9DE-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be0270c7-7799-4045-9a8c-3878512a73ef bfa8f265-7a77-40f4-89f4-2102820fcdee . FRY NM_023037 exon8 c.C871T p.L291F GCCTCTCTTCAGT . 139.0 55.0 110.0 0.0 . 312 . . . none . . PASS Atlas-SNP RTN1 6252 hgsc.bcm.edu hg19 14 60074162 60074162 + Missense_Mutation SNP A A G novel TCGA-GL-A9DE-01A-11D-A36X-10 TCGA-GL-A9DE-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be0270c7-7799-4045-9a8c-3878512a73ef bfa8f265-7a77-40f4-89f4-2102820fcdee . RTN1 NM_021136 exon4 c.T1814C p.F605S CTCCCAAACACGA . 81.0 40.0 78.0 0.0 . 139 . . . none . . PASS Atlas-SNP ZFP36L1 677 hgsc.bcm.edu hg19 14 69256832 69256832 + Silent SNP G G T novel TCGA-GL-A9DE-01A-11D-A36X-10 TCGA-GL-A9DE-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be0270c7-7799-4045-9a8c-3878512a73ef bfa8f265-7a77-40f4-89f4-2102820fcdee . ZFP36L1 NM_001244701 exon3 c.C642A p.R214R CAGGCTGCGGAGC . 94.0 38.0 68.0 0.0 . 47 . . . none . . PASS Atlas-SNP SERPINA4 5267 hgsc.bcm.edu hg19 14 95030170 95030170 + Silent SNP C C A novel TCGA-GL-A9DE-01A-11D-A36X-10 TCGA-GL-A9DE-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be0270c7-7799-4045-9a8c-3878512a73ef bfa8f265-7a77-40f4-89f4-2102820fcdee . SERPINA4 NM_006215 exon2 c.C351A p.V117V CGATGTCCATAGG . 50.0 23.0 26.0 0.0 . 81 . . . none . . PASS Atlas-SNP HERC2 8924 hgsc.bcm.edu hg19 15 28459417 28459417 + Missense_Mutation SNP C C G novel TCGA-GL-A9DE-01A-11D-A36X-10 TCGA-GL-A9DE-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be0270c7-7799-4045-9a8c-3878512a73ef bfa8f265-7a77-40f4-89f4-2102820fcdee . HERC2 NM_004667 exon41 c.G6360C p.E2120D CGTGGACTCTGAG . 98.0 47.0 72.0 0.0 . 501 . . . none . . PASS Atlas-SNP DMXL2 23312 hgsc.bcm.edu hg19 15 51792075 51792075 + Missense_Mutation SNP C C T novel TCGA-GL-A9DE-01A-11D-A36X-10 TCGA-GL-A9DE-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be0270c7-7799-4045-9a8c-3878512a73ef bfa8f265-7a77-40f4-89f4-2102820fcdee . DMXL2 NM_001174116 exon18 c.G3346A p.E1116K CCCACTCTGATCC . 128.0 53.0 95.0 0.0 . 262 . . . none . . PASS Atlas-SNP CELF6 60677 hgsc.bcm.edu hg19 15 72581548 72581548 + Missense_Mutation SNP G G C novel TCGA-GL-A9DE-01A-11D-A36X-10 TCGA-GL-A9DE-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be0270c7-7799-4045-9a8c-3878512a73ef bfa8f265-7a77-40f4-89f4-2102820fcdee . CELF6 NM_001172684 exon8 c.C961G p.L321V GGGTCAGAGGGCC . 65.0 30.0 47.0 0.0 . 30 . . . none . . PASS Atlas-SNP ANPEP 290 hgsc.bcm.edu hg19 15 90349809 90349809 + Silent SNP G G A novel TCGA-GL-A9DE-01A-11D-A36X-10 TCGA-GL-A9DE-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be0270c7-7799-4045-9a8c-3878512a73ef bfa8f265-7a77-40f4-89f4-2102820fcdee . ANPEP NM_001150 exon2 c.C6T p.A2A GCCCTTGGCCATG . 58.0 7.0 63.0 0.0 . 124 . . . none . . PASS Atlas-SNP CHTF18 63922 hgsc.bcm.edu hg19 16 842327 842327 + Missense_Mutation SNP G G A novel TCGA-GL-A9DE-01A-11D-A36X-10 TCGA-GL-A9DE-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be0270c7-7799-4045-9a8c-3878512a73ef bfa8f265-7a77-40f4-89f4-2102820fcdee . CHTF18 NM_022092 exon10 c.G1306A p.E436K ATCGATGAGATCG . 166.0 24.0 172.0 0.0 . 52 . . . none . . PASS Atlas-SNP C16orf72 29035 hgsc.bcm.edu hg19 16 9210571 9210571 + Silent SNP A A G novel TCGA-GL-A9DE-01A-11D-A36X-10 TCGA-GL-A9DE-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be0270c7-7799-4045-9a8c-3878512a73ef bfa8f265-7a77-40f4-89f4-2102820fcdee . C16orf72 NM_014117 exon4 c.A630G p.P210P TACCCCAGGCTCT . 106.0 47.0 108.0 0.0 . 26 . . . none . . PASS Atlas-SNP CNGB1 1258 hgsc.bcm.edu hg19 16 57957180 57957180 + Missense_Mutation SNP G G A novel TCGA-GL-A9DE-01A-11D-A36X-10 TCGA-GL-A9DE-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be0270c7-7799-4045-9a8c-3878512a73ef bfa8f265-7a77-40f4-89f4-2102820fcdee . CNGB1 NM_001297 exon18 c.C1640T p.T547I CACTCAGTGTCCT . 36.0 16.0 30.0 0.0 . 105 . . . none . . PASS Atlas-SNP GUCY2D 3000 hgsc.bcm.edu hg19 17 7907255 7907255 + Silent SNP C C T novel TCGA-GL-A9DE-01A-11D-A36X-10 TCGA-GL-A9DE-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be0270c7-7799-4045-9a8c-3878512a73ef bfa8f265-7a77-40f4-89f4-2102820fcdee . GUCY2D NM_000180 exon3 c.C807T p.T269T CCTGACCGATGGC . 106.0 20.0 106.0 0.0 . 82 . . . none . . PASS Atlas-SNP TMIGD1 388364 hgsc.bcm.edu hg19 17 28656425 28656425 + Nonsense_Mutation SNP G G A novel TCGA-GL-A9DE-01A-11D-A36X-10 TCGA-GL-A9DE-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be0270c7-7799-4045-9a8c-3878512a73ef bfa8f265-7a77-40f4-89f4-2102820fcdee . TMIGD1 NM_206832 exon3 c.C205T p.R69X CCTCTCGGTACCA . 91.0 5.0 73.0 0.0 . 38 . . . none . . PASS Atlas-SNP NF1 4763 hgsc.bcm.edu hg19 17 29483033 29483033 + Missense_Mutation SNP T T G novel TCGA-GL-A9DE-01A-11D-A36X-10 TCGA-GL-A9DE-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be0270c7-7799-4045-9a8c-3878512a73ef bfa8f265-7a77-40f4-89f4-2102820fcdee . NF1 NM_001128147 exon2 c.T93G p.H31Q CACACATACCAAA . 201.0 84.0 141.0 0.0 . 1586 . . . none . . PASS Atlas-SNP PEX12 5193 hgsc.bcm.edu hg19 17 33904061 33904061 + Missense_Mutation SNP T T C novel TCGA-GL-A9DE-01A-11D-A36X-10 TCGA-GL-A9DE-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be0270c7-7799-4045-9a8c-3878512a73ef bfa8f265-7a77-40f4-89f4-2102820fcdee . PEX12 NM_000286 exon2 c.A676G p.R226G ACCTCCTGGCTGG . 50.0 20.0 28.0 0.0 . 36 . . . none . . PASS Atlas-SNP PEX12 5193 hgsc.bcm.edu hg19 17 33904062 33904062 + Silent SNP G G A novel TCGA-GL-A9DE-01A-11D-A36X-10 TCGA-GL-A9DE-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be0270c7-7799-4045-9a8c-3878512a73ef bfa8f265-7a77-40f4-89f4-2102820fcdee . PEX12 NM_000286 exon2 c.C675T p.A225A CCTCCTGGCTGGT . 50.0 20.0 29.0 0.0 . 36 . . . none . . PASS Atlas-SNP KRTAP17-1 83902 hgsc.bcm.edu hg19 17 39471747 39471747 + Silent SNP G G A novel TCGA-GL-A9DE-01A-11D-A36X-10 TCGA-GL-A9DE-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be0270c7-7799-4045-9a8c-3878512a73ef bfa8f265-7a77-40f4-89f4-2102820fcdee . KRTAP17-1 NM_031964 exon1 c.C156T p.C52C TCCGCAGCAGCTG . 59.0 28.0 72.0 0.0 . 14 . . . none . . PASS Atlas-SNP KIF18B 146909 hgsc.bcm.edu hg19 17 43003847 43003847 + Missense_Mutation SNP C C T novel TCGA-GL-A9DE-01A-11D-A36X-10 TCGA-GL-A9DE-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be0270c7-7799-4045-9a8c-3878512a73ef bfa8f265-7a77-40f4-89f4-2102820fcdee . KIF18B NM_001264573 exon15 c.G2423A p.R808H CGGCTGCGGCCAT . 56.0 16.0 66.0 0.0 . 63 . . . none . . PASS Atlas-SNP FASN 2194 hgsc.bcm.edu hg19 17 80047168 80047168 + Silent SNP G G A novel TCGA-GL-A9DE-01A-11D-A36X-10 TCGA-GL-A9DE-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be0270c7-7799-4045-9a8c-3878512a73ef bfa8f265-7a77-40f4-89f4-2102820fcdee . FASN NM_004104 exon13 c.C2058T p.F686F CTCCATGAAGTAG . 93.0 51.0 98.0 0.0 . 154 . . . none . . PASS Atlas-SNP RALBP1 10928 hgsc.bcm.edu hg19 18 9535920 9535920 + Silent SNP G G A novel TCGA-GL-A9DE-01A-11D-A36X-10 TCGA-GL-A9DE-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be0270c7-7799-4045-9a8c-3878512a73ef bfa8f265-7a77-40f4-89f4-2102820fcdee . RALBP1 NM_006788 exon10 c.G1953A p.K651K TAGGAAGGAGACG . 174.0 65.0 192.0 0.0 . 48 . . . none . . PASS Atlas-SNP PPP4R1 9989 hgsc.bcm.edu hg19 18 9570630 9570630 + Silent SNP A A T novel TCGA-GL-A9DE-01A-11D-A36X-10 TCGA-GL-A9DE-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be0270c7-7799-4045-9a8c-3878512a73ef bfa8f265-7a77-40f4-89f4-2102820fcdee . PPP4R1 NM_001042388 exon11 c.T1098A p.T366T TGAAGGAGTATCC . 59.0 33.0 43.0 0.0 . 63 . . . none . . PASS Atlas-SNP DOT1L 84444 hgsc.bcm.edu hg19 19 2210838 2210838 + Silent SNP G G T novel TCGA-GL-A9DE-01A-11D-A36X-10 TCGA-GL-A9DE-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be0270c7-7799-4045-9a8c-3878512a73ef bfa8f265-7a77-40f4-89f4-2102820fcdee . DOT1L NM_032482 exon14 c.G1335T p.A445A GACGGCGGCCTCC . 119.0 55.0 126.0 0.0 . 205 . . . none . . PASS Atlas-SNP MUC16 94025 hgsc.bcm.edu hg19 19 9011358 9011358 + Missense_Mutation SNP G G T novel TCGA-GL-A9DE-01A-11D-A36X-10 TCGA-GL-A9DE-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be0270c7-7799-4045-9a8c-3878512a73ef bfa8f265-7a77-40f4-89f4-2102820fcdee . MUC16 NM_024690 exon36 c.C38875A p.P12959T TGTAGGGGCCCAG . 96.0 23.0 87.0 0.0 . 4315 . . . none . . PASS Atlas-SNP HOOK2 29911 hgsc.bcm.edu hg19 19 12878236 12878236 + Missense_Mutation SNP G G A novel TCGA-GL-A9DE-01A-11D-A36X-10 TCGA-GL-A9DE-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be0270c7-7799-4045-9a8c-3878512a73ef bfa8f265-7a77-40f4-89f4-2102820fcdee . HOOK2 NM_001100176 exon14 c.C1346T p.A449V TCTGCGGCTAAGT . 75.0 29.0 67.0 0.0 . 73 . . . none . . PASS Atlas-SNP MYO9B 4650 hgsc.bcm.edu hg19 19 17270210 17270210 + Silent SNP G G A novel TCGA-GL-A9DE-01A-11D-A36X-10 TCGA-GL-A9DE-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be0270c7-7799-4045-9a8c-3878512a73ef bfa8f265-7a77-40f4-89f4-2102820fcdee . MYO9B NM_001130065 exon8 c.G1335A p.K445K GGTGAAGCGAGAA . 86.0 36.0 78.0 0.0 . 264 . . . none . . PASS Atlas-SNP ZNF574 64763 hgsc.bcm.edu hg19 19 42583233 42583233 + Missense_Mutation SNP C C T novel TCGA-GL-A9DE-01A-11D-A36X-10 TCGA-GL-A9DE-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be0270c7-7799-4045-9a8c-3878512a73ef bfa8f265-7a77-40f4-89f4-2102820fcdee . ZNF574 NM_022752 exon2 c.C475T p.P159S CCTGCCCCTGTTG . 90.0 33.0 100.0 0.0 . 57 . . . none . . PASS Atlas-SNP PTPRH 5794 hgsc.bcm.edu hg19 19 55718205 55718205 + Silent SNP A A C novel TCGA-GL-A9DE-01A-11D-A36X-10 TCGA-GL-A9DE-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be0270c7-7799-4045-9a8c-3878512a73ef bfa8f265-7a77-40f4-89f4-2102820fcdee . PTPRH NM_001161440 exon3 c.T204G p.T68T GTCTCCAGTACAC . 180.0 65.0 136.0 0.0 . 139 . . . none . . PASS Atlas-SNP DUXA 503835 hgsc.bcm.edu hg19 19 57665813 57665813 + Silent SNP A A G novel TCGA-GL-A9DE-01A-11D-A36X-10 TCGA-GL-A9DE-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be0270c7-7799-4045-9a8c-3878512a73ef bfa8f265-7a77-40f4-89f4-2102820fcdee . DUXA NM_001012729 exon6 c.T582C p.S194S AGAGTCACTAGTG . 98.0 39.0 101.0 0.0 . 46 . . . none . . PASS Atlas-SNP TMC2 117532 hgsc.bcm.edu hg19 20 2618130 2618130 + Missense_Mutation SNP T T C novel TCGA-GL-A9DE-01A-11D-A36X-10 TCGA-GL-A9DE-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be0270c7-7799-4045-9a8c-3878512a73ef bfa8f265-7a77-40f4-89f4-2102820fcdee . TMC2 NM_080751 exon19 c.T2396C p.V799A GTGAAGTTGAGAA . 75.0 8.0 66.0 0.0 . 121 . . . none . . PASS Atlas-SNP PARD6B 84612 hgsc.bcm.edu hg19 20 49354458 49354458 + Missense_Mutation SNP A A G novel TCGA-GL-A9DE-01A-11D-A36X-10 TCGA-GL-A9DE-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be0270c7-7799-4045-9a8c-3878512a73ef bfa8f265-7a77-40f4-89f4-2102820fcdee . PARD6B NM_032521 exon2 c.A131G p.Y44C AGTTTTATGGATT . 132.0 50.0 104.0 0.0 . 31 . . . none . . PASS Atlas-SNP ATP9A 10079 hgsc.bcm.edu hg19 20 50217801 50217801 + Silent SNP C C T novel TCGA-GL-A9DE-01A-11D-A36X-10 TCGA-GL-A9DE-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be0270c7-7799-4045-9a8c-3878512a73ef bfa8f265-7a77-40f4-89f4-2102820fcdee . ATP9A NM_006045 exon28 c.G3093A p.K1031K CAGGTACTTGAGG . 148.0 8.0 113.0 0.0 . 135 . . . none . . PASS Atlas-SNP SLC7A4 6545 hgsc.bcm.edu hg19 22 21385638 21385638 + Missense_Mutation SNP G G C novel TCGA-GL-A9DE-01A-11D-A36X-10 TCGA-GL-A9DE-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be0270c7-7799-4045-9a8c-3878512a73ef bfa8f265-7a77-40f4-89f4-2102820fcdee . SLC7A4 NM_004173 exon2 c.C464G p.T155S ACGTGGGTCTCAG . 34.0 11.0 30.0 0.0 . 50 . . . none . . PASS Atlas-SNP MN1 4330 hgsc.bcm.edu hg19 22 28194900 28194900 + Silent SNP T T C novel TCGA-GL-A9DE-01A-11D-A36X-10 TCGA-GL-A9DE-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be0270c7-7799-4045-9a8c-3878512a73ef bfa8f265-7a77-40f4-89f4-2102820fcdee . MN1 NM_002430 exon1 c.A1632G p.Q544Q CTGCTGTTGCTGT . 63.0 7.0 39.0 0.0 . 122 . . . none . . PASS Atlas-SNP RANGAP1 5905 hgsc.bcm.edu hg19 22 41650402 41650402 + Silent SNP C C T novel TCGA-GL-A9DE-01A-11D-A36X-10 TCGA-GL-A9DE-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be0270c7-7799-4045-9a8c-3878512a73ef bfa8f265-7a77-40f4-89f4-2102820fcdee RANGAP1,NS,carcinoma,0,2 RANGAP1 NM_002883 exon11 c.G1170A p.E390E CTCCTCCTCTTCT . 51.0 4.0 50.0 1.0 . 47 . . . none . . PASS Atlas-SNP PLXNB2 23654 hgsc.bcm.edu hg19 22 50722099 50722099 + Silent SNP G G A novel TCGA-GL-A9DE-01A-11D-A36X-10 TCGA-GL-A9DE-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be0270c7-7799-4045-9a8c-3878512a73ef bfa8f265-7a77-40f4-89f4-2102820fcdee . PLXNB2 NM_012401 exon15 c.C2502T p.D834D CTGGATGTCCCCT . 70.0 32.0 76.0 0.0 . 172 . . . none . . PASS Atlas-SNP ZBED1 9189 hgsc.bcm.edu hg19 X 2407032 2407032 + Missense_Mutation SNP A A C novel TCGA-GL-A9DE-01A-11D-A36X-10 TCGA-GL-A9DE-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be0270c7-7799-4045-9a8c-3878512a73ef bfa8f265-7a77-40f4-89f4-2102820fcdee . ZBED1 NM_001171135 exon2 c.T1729G p.S577A TCTGGGACTTGAA . 72.0 46.0 95.0 0.0 . 64 . . . none . . PASS Atlas-SNP GPR34 2857 hgsc.bcm.edu hg19 X 41555847 41555847 + Missense_Mutation SNP T T A novel TCGA-GL-A9DE-01A-11D-A36X-10 TCGA-GL-A9DE-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be0270c7-7799-4045-9a8c-3878512a73ef bfa8f265-7a77-40f4-89f4-2102820fcdee . GPR34 NM_001097579 exon3 c.T961A p.C321S AATAGTTGCTTAG . 131.0 99.0 117.0 0.0 . 42 . . . none . . PASS Atlas-SNP COX1 5742 hgsc.bcm.edu hg19 MT 6665 6665 + Silent SNP C C T novel TCGA-GL-A9DE-01A-11D-A36X-10 TCGA-GL-A9DE-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be0270c7-7799-4045-9a8c-3878512a73ef bfa8f265-7a77-40f4-89f4-2102820fcdee . . ENST00000361624 exon1 c.C762T p.I254I AATAATCTCCCAT . 104.0 79.0 16.0 0.0 . . . . . none . . PASS Atlas-SNP ZNF490 57474 hgsc.bcm.edu hg19 19 12691823 12691824 + Frame_Shift_Del DEL GG GG - novel TCGA-GL-A9DE-01A-11D-A36X-10 TCGA-GL-A9DE-10A-01D-A370-10 GG GG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be0270c7-7799-4045-9a8c-3878512a73ef bfa8f265-7a77-40f4-89f4-2102820fcdee . ZNF490 NM_020714 exon5 c.1066_1067del p.356_356del . . 84.0 40.0 78.0 0.0 . 42 . 0.47619 0 none . . PASS Atlas-Indel,Pindel NPC2 10577 hgsc.bcm.edu hg19 14 74953056 74953057 + Frame_Shift_Del DEL TG TG - novel TCGA-GL-A9DE-01A-11D-A36X-10 TCGA-GL-A9DE-10A-01D-A370-10 TG TG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be0270c7-7799-4045-9a8c-3878512a73ef bfa8f265-7a77-40f4-89f4-2102820fcdee . NPC2 NM_006432 exon2 c.166_167del p.56_56del . . 62.0 29.0 54.0 0.0 . 9 . 0.467742 0 none . . PASS Atlas-Indel,Pindel IPP 3652 hgsc.bcm.edu hg19 1 46206791 46206792 + Frame_Shift_Ins INS - - CC novel TCGA-GL-A9DE-01A-11D-A36X-10 TCGA-GL-A9DE-10A-01D-A370-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be0270c7-7799-4045-9a8c-3878512a73ef bfa8f265-7a77-40f4-89f4-2102820fcdee . IPP NM_001145349 exon3 c.506_507insGG p.V169fs . . 133.0 56.0 105.0 0.0 . 66 . 0.421053 0 none . . PASS Atlas-Indel,Pindel GLTSCR1 29998 hgsc.bcm.edu hg19 19 48197404 48197404 + Frame_Shift_Del DEL C C - novel TCGA-GL-A9DE-01A-11D-A36X-10 TCGA-GL-A9DE-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be0270c7-7799-4045-9a8c-3878512a73ef bfa8f265-7a77-40f4-89f4-2102820fcdee . GLTSCR1 NM_015711 exon8 c.2315delG p.G772fs . . 82.0 24.0 91.0 0.0 . 79 . 0.292683 0 none . . PASS Atlas-Indel,Pindel LRIG1 26018 hgsc.bcm.edu hg19 3 66431274 66431274 + Frame_Shift_Del DEL G G - novel TCGA-GL-A9DE-01A-11D-A36X-10 TCGA-GL-A9DE-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be0270c7-7799-4045-9a8c-3878512a73ef bfa8f265-7a77-40f4-89f4-2102820fcdee . LRIG1 NM_015541 exon18 c.2783delG p.R928fs . . 59.0 21.0 49.0 0.0 . 138 . 0.355932 0 none . . PASS Atlas-Indel,Pindel SETD2 29072 hgsc.bcm.edu hg19 3 47058730 47058730 + Frame_Shift_Del DEL A A - novel TCGA-GL-A9DE-01A-11D-A36X-10 TCGA-GL-A9DE-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be0270c7-7799-4045-9a8c-3878512a73ef bfa8f265-7a77-40f4-89f4-2102820fcdee . SETD2 NM_014159 exon21 c.7549delA p.M2517X . . 71.0 65.0 46.0 0.0 . 721 . 0.915493 0 none . . PASS Atlas-INDEL FMNL3 91010 hgsc.bcm.edu hg19 12 50047553 50047554 + Frame_Shift_Ins INS - - TT novel TCGA-GL-A9DE-01A-11D-A36X-10 TCGA-GL-A9DE-10A-01D-A370-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be0270c7-7799-4045-9a8c-3878512a73ef bfa8f265-7a77-40f4-89f4-2102820fcdee FMNL3_ENST00000335154,colon,carcinoma,0,2 FMNL3 NM_175736 exon12 c.1176_1177insAA p.N392fs . . 83.0 30.0 91.0 0.0 . 137 . 0.361446 0 none . . PASS Atlas-Indel,Pindel BSG 682 hgsc.bcm.edu hg19 19 581506 581506 + Frame_Shift_Del DEL C C - novel TCGA-GL-A9DE-01A-11D-A36X-10 TCGA-GL-A9DE-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be0270c7-7799-4045-9a8c-3878512a73ef bfa8f265-7a77-40f4-89f4-2102820fcdee . BSG NM_001728 exon6 c.983delT p.F328fs . . 77.0 31.0 77.0 0.0 . 48 . 0.402597 0 none . . PASS Atlas-Indel,Pindel TRIM53AP 642569 hgsc.bcm.edu hg19 11 89732825 89732825 + RNA DEL G G - novel TCGA-GL-A9DE-01A-11D-A36X-10 TCGA-GL-A9DE-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be0270c7-7799-4045-9a8c-3878512a73ef bfa8f265-7a77-40f4-89f4-2102820fcdee . . . . . . . . 493.0 103.0 490.0 0.0 . . . 0.208925 0 none . . PASS Atlas-INDEL SCFD1 23256 hgsc.bcm.edu hg19 14 31142532 31142533 + Frame_Shift_Ins INS - - AA novel TCGA-GL-A9DE-01A-11D-A36X-10 TCGA-GL-A9DE-10A-01D-A370-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be0270c7-7799-4045-9a8c-3878512a73ef bfa8f265-7a77-40f4-89f4-2102820fcdee . SCFD1 NM_016106 exon12 c.1065_1066insAA p.V355fs . . 289.0 112.0 251.0 0.0 . 43 . 0.387543 0 none . . PASS Atlas-Indel,Pindel PEX12 5193 hgsc.bcm.edu hg19 17 33904058 33904058 + Frame_Shift_Del DEL T T - novel TCGA-GL-A9DE-01A-11D-A36X-10 TCGA-GL-A9DE-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be0270c7-7799-4045-9a8c-3878512a73ef bfa8f265-7a77-40f4-89f4-2102820fcdee . PEX12 NM_000286 exon2 c.680delG p.S227fs . . 48.0 19.0 29.0 0.0 . 36 . 0.395833 0 none . . PASS Atlas-INDEL KIF4B 285643 hgsc.bcm.edu hg19 5 154395330 154395330 + Frame_Shift_Del DEL C C - novel TCGA-GL-A9DE-01A-11D-A36X-10 TCGA-GL-A9DE-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be0270c7-7799-4045-9a8c-3878512a73ef bfa8f265-7a77-40f4-89f4-2102820fcdee . KIF4B NM_001099293 exon1 c.1910delA p.N637fs . . 413.0 173.0 321.0 0.0 . 307 . 0.418886 0 none . . PASS Atlas-Indel,Pindel PRPF40A 55660 hgsc.bcm.edu hg19 2 153551067 153551069 + In_Frame_Del DEL GCT GCT - novel TCGA-GL-A9DE-01A-11D-A36X-10 TCGA-GL-A9DE-10A-01D-A370-10 GCT GCT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be0270c7-7799-4045-9a8c-3878512a73ef bfa8f265-7a77-40f4-89f4-2102820fcdee . PRPF40A NM_017892 exon3 c.285_287del p.95_96del . . 446.0 45.0 448.0 0.0 . 149 . 0.100897 0 none . . PASS Atlas-Indel,Pindel ZNF596 169270 hgsc.bcm.edu hg19 8 195728 195728 + Frame_Shift_Del DEL T T - novel TCGA-GL-A9DE-01A-11D-A36X-10 TCGA-GL-A9DE-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be0270c7-7799-4045-9a8c-3878512a73ef bfa8f265-7a77-40f4-89f4-2102820fcdee . ZNF596 NM_001042415 exon6 c.880delC p.L294fs . . 138.0 58.0 113.0 0.0 . 34 . 0.42029 0 none . . PASS Atlas-Indel,Pindel STRIP1 85369 hgsc.bcm.edu hg19 1 110577332 110577364 + In_Frame_Del DEL CCGCCGGCAGCCGCACAGCCACCACCCGGGGCA CCGCCGGCAGCCGCACAGCCACCACCCGGGGCA - novel TCGA-GL-A9DE-01A-11D-A36X-10 TCGA-GL-A9DE-10A-01D-A370-10 CCGCCGGCAGCCGCACAGCCACCACCCGGGGCA CCGCCGGCAGCCGCACAGCCACCACCCGGGGCA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be0270c7-7799-4045-9a8c-3878512a73ef bfa8f265-7a77-40f4-89f4-2102820fcdee . STRIP1 NM_033088 exon1 c.72_104del p.24_35del . . 229.0 12.0 208.0 0.0 . 1 . 0.052 . none . . PASS Pindel SETD2 29072 hgsc.bcm.edu hg19 3 47058731 47058732 + Frame_Shift_Del DEL AC AC - novel TCGA-GL-A9DE-01A-11D-A36X-10 TCGA-GL-A9DE-10A-01D-A370-10 AC AC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be0270c7-7799-4045-9a8c-3878512a73ef bfa8f265-7a77-40f4-89f4-2102820fcdee . SETD2 NM_014159 exon21 c.7547_7548del p.2516_2516del . . 72.0 43.0 46.0 0.0 . 721 . 0.597 . none . . PASS Pindel PBRM1 55193 hgsc.bcm.edu hg19 3 52678783 52678784 + Frame_Shift_Ins INS - - T novel TCGA-GL-A9DE-01A-11D-A36X-10 TCGA-GL-A9DE-10A-01D-A370-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be0270c7-7799-4045-9a8c-3878512a73ef bfa8f265-7a77-40f4-89f4-2102820fcdee . PBRM1 NM_018313 exon9 c.836_837insA p.I279fs . . 40.0 25.0 44.0 0.0 . 1252 . 0.625 . none . . PASS Pindel PEX12 5193 hgsc.bcm.edu hg19 17 33904058 33904062 + Frame_Shift_Del DEL TCCTG TCCTG - novel TCGA-GL-A9DE-01A-11D-A36X-10 TCGA-GL-A9DE-10A-01D-A370-10 TCCTG TCCTG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be0270c7-7799-4045-9a8c-3878512a73ef bfa8f265-7a77-40f4-89f4-2102820fcdee . PEX12 NM_000286 exon2 c.676_680del p.226_227del . . 49.0 11.0 30.0 0.0 . 36 . 0.224 . none . . PASS Pindel