Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq TVarRat NVarRat dbSNP_Strength dbSNP_AF dbSNP_PopFreq Confidence Algorithm TRIM63 84676 hgsc.bcm.edu hg19 1 26392820 26392820 + Missense_Mutation SNP C C T novel TCGA-G7-A8LB-01A-11D-A35Z-10 TCGA-G7-A8LB-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f1beace3-f40d-4e2f-abff-815f257096c7 3c8d7f6b-ef32-4955-8113-91d246df62d4 . TRIM63 NM_032588 exon2 c.G271A p.G91S GCAGGCCGTACAC . 48.0 23.0 82.0 0.0 . 33 . . . none . . PASS Atlas-SNP ATXN7L2 127002 hgsc.bcm.edu hg19 1 110031587 110031587 + Missense_Mutation SNP G G A novel TCGA-G7-A8LB-01A-11D-A35Z-10 TCGA-G7-A8LB-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f1beace3-f40d-4e2f-abff-815f257096c7 3c8d7f6b-ef32-4955-8113-91d246df62d4 . ATXN7L2 NM_153340 exon7 c.G902A p.G301E GCCCAGGGCGCAA . 74.0 42.0 77.0 0.0 . 60 . . . none . . PASS Atlas-SNP PRRC2C 23215 hgsc.bcm.edu hg19 1 171501480 171501480 + Splice_Site SNP A A G novel TCGA-G7-A8LB-01A-11D-A35Z-10 TCGA-G7-A8LB-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f1beace3-f40d-4e2f-abff-815f257096c7 3c8d7f6b-ef32-4955-8113-91d246df62d4 . . NM_015172 exon12 c.1249-2A>G . TGTTTCAGCATCC . 75.0 36.0 110.0 0.0 . . . . . none . . PASS Atlas-SNP CFHR2 3080 hgsc.bcm.edu hg19 1 196927093 196927093 + Missense_Mutation SNP A A G novel TCGA-G7-A8LB-01A-11D-A35Z-10 TCGA-G7-A8LB-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f1beace3-f40d-4e2f-abff-815f257096c7 3c8d7f6b-ef32-4955-8113-91d246df62d4 . CFHR2 NM_005666 exon4 c.A503G p.Y168C CAGTATATGCTCC . 183.0 85.0 264.0 0.0 . 73 . . . none . . PASS Atlas-SNP ZBTB18 10472 hgsc.bcm.edu hg19 1 244218407 244218407 + Missense_Mutation SNP A A G novel TCGA-G7-A8LB-01A-11D-A35Z-10 TCGA-G7-A8LB-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f1beace3-f40d-4e2f-abff-815f257096c7 3c8d7f6b-ef32-4955-8113-91d246df62d4 . . NM_205768 exon2 c.A1331G p.E444G CGGGGGAGAAGCC . 114.0 5.0 147.0 0.0 . . . . . none . . PASS Atlas-SNP RMND5A 64795 hgsc.bcm.edu hg19 2 86968117 86968117 + Silent SNP T T C novel TCGA-G7-A8LB-01A-11D-A35Z-10 TCGA-G7-A8LB-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f1beace3-f40d-4e2f-abff-815f257096c7 3c8d7f6b-ef32-4955-8113-91d246df62d4 RMND5A,NS,carcinoma,0,1 RMND5A NM_022780 exon2 c.T210C p.D70D AAAGGATACTGTT . 971.0 225.0 1255.0 0.0 . 33 . . . none . . PASS Atlas-SNP BAZ2B 29994 hgsc.bcm.edu hg19 2 160295123 160295123 + Silent SNP T T A novel TCGA-G7-A8LB-01A-11D-A35Z-10 TCGA-G7-A8LB-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f1beace3-f40d-4e2f-abff-815f257096c7 3c8d7f6b-ef32-4955-8113-91d246df62d4 . BAZ2B NM_013450 exon8 c.A984T p.P328P AGGTAATGGCTGG . 56.0 31.0 62.0 0.0 . 196 . . . none . . PASS Atlas-SNP TTC21B 79809 hgsc.bcm.edu hg19 2 166785751 166785751 + Missense_Mutation SNP A A C novel TCGA-G7-A8LB-01A-11D-A35Z-10 TCGA-G7-A8LB-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f1beace3-f40d-4e2f-abff-815f257096c7 3c8d7f6b-ef32-4955-8113-91d246df62d4 . TTC21B NM_024753 exon11 c.T1280G p.F427C TGTGAAAAGTGAG . 316.0 137.0 355.0 0.0 . 130 . . . none . . PASS Atlas-SNP TTN 7273 hgsc.bcm.edu hg19 2 179476842 179476842 + Nonsense_Mutation SNP G G A novel TCGA-G7-A8LB-01A-11D-A35Z-10 TCGA-G7-A8LB-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f1beace3-f40d-4e2f-abff-815f257096c7 3c8d7f6b-ef32-4955-8113-91d246df62d4 . TTN NM_001267550 exon267 c.C50296T p.R16766X CATGTCGTTTTGT . 99.0 44.0 109.0 0.0 . 18412 . . . none . . PASS Atlas-SNP PID1 55022 hgsc.bcm.edu hg19 2 230127427 230127427 + Missense_Mutation SNP A A G novel TCGA-G7-A8LB-01A-11D-A35Z-10 TCGA-G7-A8LB-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f1beace3-f40d-4e2f-abff-815f257096c7 3c8d7f6b-ef32-4955-8113-91d246df62d4 . PID1 NM_017933 exon2 c.T95C p.L32S AAATGTAAAGGTT . 49.0 18.0 86.0 0.0 . 43 . . . none . . PASS Atlas-SNP SLC26A6 65010 hgsc.bcm.edu hg19 3 48664425 48664425 + Missense_Mutation SNP G G T novel TCGA-G7-A8LB-01A-11D-A35Z-10 TCGA-G7-A8LB-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f1beace3-f40d-4e2f-abff-815f257096c7 3c8d7f6b-ef32-4955-8113-91d246df62d4 . SLC26A6 NM_022911 exon18 c.C1957A p.P653T CATCTGGGGCCTT . 94.0 59.0 87.0 0.0 . 45 . . . none . . PASS Atlas-SNP SEMA3F 6405 hgsc.bcm.edu hg19 3 50214250 50214250 + Missense_Mutation SNP A A T novel TCGA-G7-A8LB-01A-11D-A35Z-10 TCGA-G7-A8LB-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f1beace3-f40d-4e2f-abff-815f257096c7 3c8d7f6b-ef32-4955-8113-91d246df62d4 . SEMA3F NM_004186 exon7 c.A599T p.K200M AGGGCAAGTGTCC . 57.0 15.0 63.0 0.0 . 62 . . . none . . PASS Atlas-SNP CACNA2D3 55799 hgsc.bcm.edu hg19 3 55018690 55018690 + Missense_Mutation SNP A A G novel TCGA-G7-A8LB-01A-11D-A35Z-10 TCGA-G7-A8LB-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f1beace3-f40d-4e2f-abff-815f257096c7 3c8d7f6b-ef32-4955-8113-91d246df62d4 . CACNA2D3 NM_018398 exon30 c.A2612G p.Y871C AAGACTACACACA . 93.0 70.0 83.0 0.0 . 159 . . . none . . PASS Atlas-SNP GTPBP8 29083 hgsc.bcm.edu hg19 3 112709865 112709865 + Missense_Mutation SNP C C T novel TCGA-G7-A8LB-01A-11D-A35Z-10 TCGA-G7-A8LB-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f1beace3-f40d-4e2f-abff-815f257096c7 3c8d7f6b-ef32-4955-8113-91d246df62d4 . GTPBP8 NM_138485 exon1 c.C19T p.R7W GGGCTGCGGCTGG . 55.0 25.0 77.0 0.0 . 22 . . . none . . PASS Atlas-SNP ALDH1L1 10840 hgsc.bcm.edu hg19 3 125844500 125844500 + Missense_Mutation SNP A A G novel TCGA-G7-A8LB-01A-11D-A35Z-10 TCGA-G7-A8LB-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f1beace3-f40d-4e2f-abff-815f257096c7 3c8d7f6b-ef32-4955-8113-91d246df62d4 . ALDH1L1 NM_001270364 exon15 c.T1789C p.C597R CCAGGCAGGCAGC . 144.0 102.0 154.0 1.0 . 138 . . . none . . PASS Atlas-SNP SENP2 59343 hgsc.bcm.edu hg19 3 185341841 185341841 + Nonsense_Mutation SNP G G T novel TCGA-G7-A8LB-01A-11D-A35Z-10 TCGA-G7-A8LB-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f1beace3-f40d-4e2f-abff-815f257096c7 3c8d7f6b-ef32-4955-8113-91d246df62d4 . SENP2 NM_021627 exon15 c.G1582T p.E528X CTTTTAGAGTGGA . 55.0 18.0 53.0 0.0 . 88 . . . none . . PASS Atlas-SNP JAKMIP1 152789 hgsc.bcm.edu hg19 4 6107649 6107649 + Missense_Mutation SNP C C T novel TCGA-G7-A8LB-01A-11D-A35Z-10 TCGA-G7-A8LB-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f1beace3-f40d-4e2f-abff-815f257096c7 3c8d7f6b-ef32-4955-8113-91d246df62d4 JAKMIP1_ENST00000409021,colon,carcinoma,0,2 JAKMIP1 NM_001099433 exon3 c.G175A p.E59K CCTGCTCGCGCTC . 33.0 14.0 92.0 0.0 . 250 . . . none . . PASS Atlas-SNP WDR19 57728 hgsc.bcm.edu hg19 4 39191388 39191388 + Missense_Mutation SNP G G C novel TCGA-G7-A8LB-01A-11D-A35Z-10 TCGA-G7-A8LB-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f1beace3-f40d-4e2f-abff-815f257096c7 3c8d7f6b-ef32-4955-8113-91d246df62d4 . WDR19 NM_025132 exon4 c.G277C p.D93H CAGTTAGACAATG . 93.0 50.0 114.0 0.0 . 96 . . . none . . PASS Atlas-SNP KIAA1211 57482 hgsc.bcm.edu hg19 4 57182299 57182299 + Silent SNP C C T novel TCGA-G7-A8LB-01A-11D-A35Z-10 TCGA-G7-A8LB-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f1beace3-f40d-4e2f-abff-815f257096c7 3c8d7f6b-ef32-4955-8113-91d246df62d4 . KIAA1211 NM_020722 exon8 c.C2631T p.D877D CGGAGACAGCGCG . 62.0 31.0 79.0 0.0 . 178 . . . none . . PASS Atlas-SNP CNOT6L 246175 hgsc.bcm.edu hg19 4 78665898 78665898 + Missense_Mutation SNP A A G novel TCGA-G7-A8LB-01A-11D-A35Z-10 TCGA-G7-A8LB-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f1beace3-f40d-4e2f-abff-815f257096c7 3c8d7f6b-ef32-4955-8113-91d246df62d4 . CNOT6L NM_144571 exon7 c.T691C p.C231R CGTCACAGTTAAC . 48.0 20.0 93.0 0.0 . 57 . . . none . . PASS Atlas-SNP C4orf29 80167 hgsc.bcm.edu hg19 4 128930118 128930118 + Missense_Mutation SNP C C G novel TCGA-G7-A8LB-01A-11D-A35Z-10 TCGA-G7-A8LB-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f1beace3-f40d-4e2f-abff-815f257096c7 3c8d7f6b-ef32-4955-8113-91d246df62d4 . C4orf29 NM_001039717 exon5 c.C322G p.P108A TATAGACCTGTAT . 164.0 77.0 238.0 0.0 . 58 . . . none . . PASS Atlas-SNP ZNF366 167465 hgsc.bcm.edu hg19 5 71739912 71739912 + Missense_Mutation SNP C C T novel TCGA-G7-A8LB-01A-11D-A35Z-10 TCGA-G7-A8LB-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f1beace3-f40d-4e2f-abff-815f257096c7 3c8d7f6b-ef32-4955-8113-91d246df62d4 . ZNF366 NM_152625 exon5 c.G1906A p.A636T GGGGGGCCAGGCC . 63.0 28.0 75.0 0.0 . 108 . . . none . . PASS Atlas-SNP HMGCR 3156 hgsc.bcm.edu hg19 5 74643113 74643113 + Missense_Mutation SNP A A G novel TCGA-G7-A8LB-01A-11D-A35Z-10 TCGA-G7-A8LB-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f1beace3-f40d-4e2f-abff-815f257096c7 3c8d7f6b-ef32-4955-8113-91d246df62d4 . HMGCR NM_001130996 exon6 c.A535G p.I179V CTTGTGATTGGAG . 91.0 37.0 131.0 0.0 . 53 . . . none . . PASS Atlas-SNP YTHDC2 64848 hgsc.bcm.edu hg19 5 112860848 112860848 + Missense_Mutation SNP G G C novel TCGA-G7-A8LB-01A-11D-A35Z-10 TCGA-G7-A8LB-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f1beace3-f40d-4e2f-abff-815f257096c7 3c8d7f6b-ef32-4955-8113-91d246df62d4 . YTHDC2 NM_022828 exon3 c.G449C p.R150T CAGAAAGAGGAAA . 152.0 79.0 210.0 0.0 . 118 . . . none . . PASS Atlas-SNP JAKMIP2 9832 hgsc.bcm.edu hg19 5 146991868 146991868 + Splice_Site SNP C C T novel TCGA-G7-A8LB-01A-11D-A35Z-10 TCGA-G7-A8LB-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f1beace3-f40d-4e2f-abff-815f257096c7 3c8d7f6b-ef32-4955-8113-91d246df62d4 . JAKMIP2 NM_001270934 exon20 c.2349+1G>A . CACCTACCTTTTC . 34.0 15.0 32.0 0.0 . 154 . . . none . . PASS Atlas-SNP ZBTB12 221527 hgsc.bcm.edu hg19 6 31868749 31868749 + Missense_Mutation SNP T T G novel TCGA-G7-A8LB-01A-11D-A35Z-10 TCGA-G7-A8LB-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f1beace3-f40d-4e2f-abff-815f257096c7 3c8d7f6b-ef32-4955-8113-91d246df62d4 . ZBTB12 NM_181842 exon2 c.A334C p.M112L GCTCCATCTGCAG . 63.0 37.0 100.0 0.0 . 25 . . . none . . PASS Atlas-SNP ZNF318 24149 hgsc.bcm.edu hg19 6 43305593 43305593 + Missense_Mutation SNP G G A novel TCGA-G7-A8LB-01A-11D-A35Z-10 TCGA-G7-A8LB-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f1beace3-f40d-4e2f-abff-815f257096c7 3c8d7f6b-ef32-4955-8113-91d246df62d4 . ZNF318 NM_014345 exon10 c.C6143T p.S2048F GATACAGAATTTT . 87.0 40.0 175.0 0.0 . 175 . . . none . . PASS Atlas-SNP CAPN11 11131 hgsc.bcm.edu hg19 6 44140108 44140108 + Missense_Mutation SNP C C A novel TCGA-G7-A8LB-01A-11D-A35Z-10 TCGA-G7-A8LB-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f1beace3-f40d-4e2f-abff-815f257096c7 3c8d7f6b-ef32-4955-8113-91d246df62d4 . CAPN11 NM_007058 exon5 c.C479A p.P160H TGGTGCCCAGAGG . 69.0 40.0 74.0 0.0 . 66 . . . none . . PASS Atlas-SNP RNGTT 8732 hgsc.bcm.edu hg19 6 89614664 89614664 + Missense_Mutation SNP C C A novel TCGA-G7-A8LB-01A-11D-A35Z-10 TCGA-G7-A8LB-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f1beace3-f40d-4e2f-abff-815f257096c7 3c8d7f6b-ef32-4955-8113-91d246df62d4 . RNGTT NM_003800 exon6 c.G454T p.A152S CAACTGCTGCTTC . 76.0 37.0 113.0 0.0 . 52 . . . none . . PASS Atlas-SNP TRAF3IP2 10758 hgsc.bcm.edu hg19 6 111880633 111880633 + Missense_Mutation SNP G G T novel TCGA-G7-A8LB-01A-11D-A35Z-10 TCGA-G7-A8LB-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f1beace3-f40d-4e2f-abff-815f257096c7 3c8d7f6b-ef32-4955-8113-91d246df62d4 . TRAF3IP2 NM_147686 exon9 c.C1673A p.P558H AGGGTGGGCAGAG . 67.0 34.0 97.0 0.0 . 35 . . . none . . PASS Atlas-SNP TBP 6908 hgsc.bcm.edu hg19 6 170871004 170871004 + Silent SNP G G A novel TCGA-G7-A8LB-01A-11D-A35Z-10 TCGA-G7-A8LB-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f1beace3-f40d-4e2f-abff-815f257096c7 3c8d7f6b-ef32-4955-8113-91d246df62d4 . TBP NM_003194 exon3 c.G180A p.Q60Q GCAGCAGCAACAA . 47.0 4.0 58.0 0.0 . 58 . . . none . . PASS Atlas-SNP TBP 6908 hgsc.bcm.edu hg19 6 170871180 170871180 + Missense_Mutation SNP C C A novel TCGA-G7-A8LB-01A-11D-A35Z-10 TCGA-G7-A8LB-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f1beace3-f40d-4e2f-abff-815f257096c7 3c8d7f6b-ef32-4955-8113-91d246df62d4 . TBP NM_003194 exon3 c.C356A p.P119Q AGGCACCACAGCT . 103.0 51.0 131.0 0.0 . 58 . . . none . . PASS Atlas-SNP IQCE 23288 hgsc.bcm.edu hg19 7 2625912 2625912 + Silent SNP C C A novel TCGA-G7-A8LB-01A-11D-A35Z-10 TCGA-G7-A8LB-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f1beace3-f40d-4e2f-abff-815f257096c7 3c8d7f6b-ef32-4955-8113-91d246df62d4 .,1 IQCE NM_152558 exon12 c.C895A p.R299R TTGTCCCGGAGTG . 74.0 10.0 69.0 0.0 . 66 . . . none . . PASS Atlas-SNP INMT 11185 hgsc.bcm.edu hg19 7 30795228 30795228 + Missense_Mutation SNP T T G novel TCGA-G7-A8LB-01A-11D-A35Z-10 TCGA-G7-A8LB-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f1beace3-f40d-4e2f-abff-815f257096c7 3c8d7f6b-ef32-4955-8113-91d246df62d4 . INMT NM_006774 exon3 c.T553G p.S185A CTTGCCTCACTGC . 74.0 17.0 55.0 0.0 . 38 . . . none . . PASS Atlas-SNP DYNC1I1 1780 hgsc.bcm.edu hg19 7 95668656 95668656 + Missense_Mutation SNP G G T novel TCGA-G7-A8LB-01A-11D-A35Z-10 TCGA-G7-A8LB-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f1beace3-f40d-4e2f-abff-815f257096c7 3c8d7f6b-ef32-4955-8113-91d246df62d4 . DYNC1I1 NM_004411 exon14 c.G1483T p.A495S CACATGGCAGTGG . 140.0 89.0 127.0 0.0 . 111 . . . none . . PASS Atlas-SNP ACTL6B 51412 hgsc.bcm.edu hg19 7 100253150 100253150 + Silent SNP C C T novel TCGA-G7-A8LB-01A-11D-A35Z-10 TCGA-G7-A8LB-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f1beace3-f40d-4e2f-abff-815f257096c7 3c8d7f6b-ef32-4955-8113-91d246df62d4 . ACTL6B NM_016188 exon3 c.G162A p.L54L CCCCTCCAGCTCC . 65.0 22.0 51.0 0.0 . 47 . . . none . . PASS Atlas-SNP MYOM2 9172 hgsc.bcm.edu hg19 8 2026963 2026963 + Missense_Mutation SNP G G T novel TCGA-G7-A8LB-01A-11D-A35Z-10 TCGA-G7-A8LB-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f1beace3-f40d-4e2f-abff-815f257096c7 3c8d7f6b-ef32-4955-8113-91d246df62d4 . MYOM2 NM_003970 exon12 c.G1411T p.V471F TCCAGGGTCTCTG . 67.0 34.0 103.0 0.0 . 251 . . . none . . PASS Atlas-SNP UBR5 51366 hgsc.bcm.edu hg19 8 103273473 103273473 + Silent SNP A A T novel TCGA-G7-A8LB-01A-11D-A35Z-10 TCGA-G7-A8LB-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f1beace3-f40d-4e2f-abff-815f257096c7 3c8d7f6b-ef32-4955-8113-91d246df62d4 . UBR5 NM_015902 exon56 c.T7857A p.P2619P ACCATTAGGAATG . 91.0 36.0 103.0 0.0 . 285 . . . none . . PASS Atlas-SNP LRRC14 9684 hgsc.bcm.edu hg19 8 145745846 145745846 + Missense_Mutation SNP T T G novel TCGA-G7-A8LB-01A-11D-A35Z-10 TCGA-G7-A8LB-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f1beace3-f40d-4e2f-abff-815f257096c7 3c8d7f6b-ef32-4955-8113-91d246df62d4 . LRRC14 NM_001272036 exon4 c.T554G p.L185R AGGCACTCCGAAG . 31.0 14.0 46.0 0.0 . 25 . . . none . . PASS Atlas-SNP FREM1 158326 hgsc.bcm.edu hg19 9 14776064 14776064 + Missense_Mutation SNP G G A rs369703203 alternate_allele TCGA-G7-A8LB-01A-11D-A35Z-10 TCGA-G7-A8LB-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f1beace3-f40d-4e2f-abff-815f257096c7 3c8d7f6b-ef32-4955-8113-91d246df62d4 . FREM1 NM_144966 exon26 c.C4580T p.P1527L AGGTCAGGGGAAA . 111.0 50.0 145.0 0.0 . 261 . . . alt . . PASS Atlas-SNP GPR144 347088 hgsc.bcm.edu hg19 9 127215926 127215926 + Missense_Mutation SNP C C G novel TCGA-G7-A8LB-01A-11D-A35Z-10 TCGA-G7-A8LB-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f1beace3-f40d-4e2f-abff-815f257096c7 3c8d7f6b-ef32-4955-8113-91d246df62d4 . GPR144 NM_001161808 exon4 c.C950G p.P317R TGCTGCCCACTGT . 21.0 10.0 22.0 0.0 . 33 . . . none . . PASS Atlas-SNP MAMDC4 158056 hgsc.bcm.edu hg19 9 139750216 139750216 + Missense_Mutation SNP G G A novel TCGA-G7-A8LB-01A-11D-A35Z-10 TCGA-G7-A8LB-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f1beace3-f40d-4e2f-abff-815f257096c7 3c8d7f6b-ef32-4955-8113-91d246df62d4 . MAMDC4 NM_206920 exon13 c.G1504A p.G502S GCTGGGGGCTGGG . 63.0 44.0 101.0 0.0 . 117 . . . none . . PASS Atlas-SNP DIP2C 22982 hgsc.bcm.edu hg19 10 459976 459976 + Missense_Mutation SNP C C T novel TCGA-G7-A8LB-01A-11D-A35Z-10 TCGA-G7-A8LB-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f1beace3-f40d-4e2f-abff-815f257096c7 3c8d7f6b-ef32-4955-8113-91d246df62d4 . DIP2C NM_014974 exon8 c.G934A p.V312M TGACCACGCCCAG . 33.0 14.0 63.0 0.0 . 195 . . . none . . PASS Atlas-SNP GDF2 2658 hgsc.bcm.edu hg19 10 48416620 48416620 + Missense_Mutation SNP A A G novel TCGA-G7-A8LB-01A-11D-A35Z-10 TCGA-G7-A8LB-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f1beace3-f40d-4e2f-abff-815f257096c7 3c8d7f6b-ef32-4955-8113-91d246df62d4 . GDF2 NM_016204 exon1 c.T74C p.L25P CTCTGCAGTGGCT . 59.0 31.0 78.0 0.0 . 77 . . . none . . PASS Atlas-SNP HERC4 26091 hgsc.bcm.edu hg19 10 69804160 69804160 + Splice_Site SNP C C T novel TCGA-G7-A8LB-01A-11D-A35Z-10 TCGA-G7-A8LB-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f1beace3-f40d-4e2f-abff-815f257096c7 3c8d7f6b-ef32-4955-8113-91d246df62d4 . HERC4 NM_022079 exon5 c.386+1G>A . TTGTTACCTGGGT . 76.0 41.0 114.0 0.0 . 78 . . . none . . PASS Atlas-SNP UNC5B 219699 hgsc.bcm.edu hg19 10 73051493 73051493 + Missense_Mutation SNP G G T novel TCGA-G7-A8LB-01A-11D-A35Z-10 TCGA-G7-A8LB-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f1beace3-f40d-4e2f-abff-815f257096c7 3c8d7f6b-ef32-4955-8113-91d246df62d4 . UNC5B NM_170744 exon10 c.G1599T p.Q533H CCAGCAGCTCTTG . 47.0 20.0 61.0 0.0 . 123 . . . none . . PASS Atlas-SNP BCCIP 56647 hgsc.bcm.edu hg19 10 127512176 127512176 + Missense_Mutation SNP C C T novel TCGA-G7-A8LB-01A-11D-A35Z-10 TCGA-G7-A8LB-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f1beace3-f40d-4e2f-abff-815f257096c7 3c8d7f6b-ef32-4955-8113-91d246df62d4 . BCCIP NM_016567 exon1 c.C50T p.P17L CGCAGCCGCCGGA . 73.0 39.0 128.0 0.0 . 48 . . . none . . PASS Atlas-SNP MTMR2 8898 hgsc.bcm.edu hg19 11 95657091 95657091 + Missense_Mutation SNP G G A novel TCGA-G7-A8LB-01A-11D-A35Z-10 TCGA-G7-A8LB-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f1beace3-f40d-4e2f-abff-815f257096c7 3c8d7f6b-ef32-4955-8113-91d246df62d4 . MTMR2 NM_016156 exon1 c.C28T p.L10F AGCCAAGACTCTC . 182.0 76.0 275.0 0.0 . 79 . . . none . . PASS Atlas-SNP TMPRSS4 56649 hgsc.bcm.edu hg19 11 117973872 117973872 + Missense_Mutation SNP C C A novel TCGA-G7-A8LB-01A-11D-A35Z-10 TCGA-G7-A8LB-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f1beace3-f40d-4e2f-abff-815f257096c7 3c8d7f6b-ef32-4955-8113-91d246df62d4 . TMPRSS4 NM_019894 exon4 c.C214A p.P72T TTCATCCCGAGGA . 43.0 21.0 81.0 0.0 . 46 . . . none . . PASS Atlas-SNP DDX6 1656 hgsc.bcm.edu hg19 11 118635954 118635954 + Silent SNP G G T novel TCGA-G7-A8LB-01A-11D-A35Z-10 TCGA-G7-A8LB-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f1beace3-f40d-4e2f-abff-815f257096c7 3c8d7f6b-ef32-4955-8113-91d246df62d4 . DDX6 NM_004397 exon6 c.C609A p.T203T TAAATTGGTTCCT . 54.0 19.0 61.0 0.0 . 64 . . . none . . PASS Atlas-SNP SLC6A12 6539 hgsc.bcm.edu hg19 12 308000 308000 + Missense_Mutation SNP T T G novel TCGA-G7-A8LB-01A-11D-A35Z-10 TCGA-G7-A8LB-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f1beace3-f40d-4e2f-abff-815f257096c7 3c8d7f6b-ef32-4955-8113-91d246df62d4 . SLC6A12 NM_001122848 exon8 c.A809C p.Y270S TTCAAGTAGTAGA . 221.0 125.0 225.0 0.0 . 60 . . . none . . PASS Atlas-SNP LRRK2 120892 hgsc.bcm.edu hg19 12 40760813 40760813 + Missense_Mutation SNP C C A novel TCGA-G7-A8LB-01A-11D-A35Z-10 TCGA-G7-A8LB-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f1beace3-f40d-4e2f-abff-815f257096c7 3c8d7f6b-ef32-4955-8113-91d246df62d4 . LRRK2 NM_198578 exon50 c.C7396A p.L2466I GGAAGCCTTAAAA . 454.0 152.0 336.0 0.0 . 763 . . . none . . PASS Atlas-SNP LARP4 113251 hgsc.bcm.edu hg19 12 50834282 50834282 + Missense_Mutation SNP C C T novel TCGA-G7-A8LB-01A-11D-A35Z-10 TCGA-G7-A8LB-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f1beace3-f40d-4e2f-abff-815f257096c7 3c8d7f6b-ef32-4955-8113-91d246df62d4 . LARP4 NM_001170808 exon7 c.C700T p.H234Y TTTGCACACAATA . 653.0 404.0 453.0 0.0 . 58 . . . none . . PASS Atlas-SNP C12orf66 144577 hgsc.bcm.edu hg19 12 64615868 64615868 + Silent SNP G G A novel TCGA-G7-A8LB-01A-11D-A35Z-10 TCGA-G7-A8LB-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f1beace3-f40d-4e2f-abff-815f257096c7 3c8d7f6b-ef32-4955-8113-91d246df62d4 . C12orf66 NM_152440 exon1 c.C150T p.S50S CAGCCAGCTGCCC . 202.0 134.0 216.0 1.0 . 28 . . . none . . PASS Atlas-SNP TRHDE 29953 hgsc.bcm.edu hg19 12 73012751 73012751 + Missense_Mutation SNP C C T novel TCGA-G7-A8LB-01A-11D-A35Z-10 TCGA-G7-A8LB-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f1beace3-f40d-4e2f-abff-815f257096c7 3c8d7f6b-ef32-4955-8113-91d246df62d4 . TRHDE NM_013381 exon13 c.C2267T p.A756V GGCATGCTGCCAG . 409.0 135.0 381.0 0.0 . 194 . . . none . . PASS Atlas-SNP APPL2 55198 hgsc.bcm.edu hg19 12 105582149 105582149 + Silent SNP C C A novel TCGA-G7-A8LB-01A-11D-A35Z-10 TCGA-G7-A8LB-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f1beace3-f40d-4e2f-abff-815f257096c7 3c8d7f6b-ef32-4955-8113-91d246df62d4 . APPL2 NM_001251904 exon17 c.G1554T p.V518V ATAAATCACTTCA . 115.0 68.0 105.0 0.0 . 69 . . . none . . PASS Atlas-SNP HECTD4 283450 hgsc.bcm.edu hg19 12 112620983 112620983 + Missense_Mutation SNP C C T novel TCGA-G7-A8LB-01A-11D-A35Z-10 TCGA-G7-A8LB-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f1beace3-f40d-4e2f-abff-815f257096c7 3c8d7f6b-ef32-4955-8113-91d246df62d4 . . NM_001109662 exon62 c.G10465A p.D3489N ATTCATCTTCACC . 137.0 55.0 130.0 0.0 . . . . . none . . PASS Atlas-SNP TPCN1 53373 hgsc.bcm.edu hg19 12 113704112 113704112 + Missense_Mutation SNP T T A novel TCGA-G7-A8LB-01A-11D-A35Z-10 TCGA-G7-A8LB-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f1beace3-f40d-4e2f-abff-815f257096c7 3c8d7f6b-ef32-4955-8113-91d246df62d4 . TPCN1 NM_001143819 exon5 c.T581A p.L194H TGCTGCTCTCCCT . 45.0 11.0 43.0 0.0 . 109 . . . none . . PASS Atlas-SNP PIBF1 10464 hgsc.bcm.edu hg19 13 73357620 73357620 + Missense_Mutation SNP A A T novel TCGA-G7-A8LB-01A-11D-A35Z-10 TCGA-G7-A8LB-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f1beace3-f40d-4e2f-abff-815f257096c7 3c8d7f6b-ef32-4955-8113-91d246df62d4 . PIBF1 NM_006346 exon2 c.A13T p.I5F CGAAAAATTTCAA . 150.0 65.0 216.0 0.0 . 65 . . . none . . PASS Atlas-SNP SALL2 6297 hgsc.bcm.edu hg19 14 21991632 21991632 + Missense_Mutation SNP C C T novel TCGA-G7-A8LB-01A-11D-A35Z-10 TCGA-G7-A8LB-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f1beace3-f40d-4e2f-abff-815f257096c7 3c8d7f6b-ef32-4955-8113-91d246df62d4 . SALL2 NM_005407 exon2 c.G2230A p.G744R CTGCCCCGGAGAC . 38.0 15.0 61.0 0.0 . 95 . . . none . . PASS Atlas-SNP PSMB11 122706 hgsc.bcm.edu hg19 14 23511771 23511771 + Missense_Mutation SNP C C T rs376450654 TCGA-G7-A8LB-01A-11D-A35Z-10 TCGA-G7-A8LB-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f1beace3-f40d-4e2f-abff-815f257096c7 3c8d7f6b-ef32-4955-8113-91d246df62d4 . PSMB11 NM_001099780 exon1 c.C337T p.R113W GAGCTGCGGCTTC . 39.0 14.0 56.0 0.0 . 40 . . . weak . . PASS Atlas-SNP ZBTB42 100128927 hgsc.bcm.edu hg19 14 105267928 105267928 + Missense_Mutation SNP C C G novel TCGA-G7-A8LB-01A-11D-A35Z-10 TCGA-G7-A8LB-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f1beace3-f40d-4e2f-abff-815f257096c7 3c8d7f6b-ef32-4955-8113-91d246df62d4 . ZBTB42 NM_001137601 exon2 c.C394G p.P132A CCTGCCCCTGGGG . 116.0 56.0 169.0 0.0 . 10 . . . none . . PASS Atlas-SNP MAP1A 4130 hgsc.bcm.edu hg19 15 43818609 43818609 + Silent SNP G G T novel TCGA-G7-A8LB-01A-11D-A35Z-10 TCGA-G7-A8LB-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f1beace3-f40d-4e2f-abff-815f257096c7 3c8d7f6b-ef32-4955-8113-91d246df62d4 . MAP1A NM_002373 exon4 c.G4938T p.V1646V GGATGTGGTCCAG . 73.0 4.0 124.0 0.0 . 189 . . . none . . PASS Atlas-SNP CACNA1H 8912 hgsc.bcm.edu hg19 16 1259111 1259111 + Missense_Mutation SNP T T C novel TCGA-G7-A8LB-01A-11D-A35Z-10 TCGA-G7-A8LB-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f1beace3-f40d-4e2f-abff-815f257096c7 3c8d7f6b-ef32-4955-8113-91d246df62d4 . CACNA1H NM_021098 exon17 c.T3443C p.L1148P GCAGCCTGGGCCG . 837.0 286.0 904.0 1.0 . 317 . . . none . . PASS Atlas-SNP CCDC64B 146439 hgsc.bcm.edu hg19 16 3080512 3080512 + Missense_Mutation SNP G G C novel TCGA-G7-A8LB-01A-11D-A35Z-10 TCGA-G7-A8LB-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f1beace3-f40d-4e2f-abff-815f257096c7 3c8d7f6b-ef32-4955-8113-91d246df62d4 . CCDC64B NM_001103175 exon4 c.C700G p.L234V TCTGCAGTCTGCC . 26.0 16.0 27.0 0.0 . 19 . . . none . . PASS Atlas-SNP TMEM186 25880 hgsc.bcm.edu hg19 16 8889985 8889985 + Missense_Mutation SNP A A G novel TCGA-G7-A8LB-01A-11D-A35Z-10 TCGA-G7-A8LB-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f1beace3-f40d-4e2f-abff-815f257096c7 3c8d7f6b-ef32-4955-8113-91d246df62d4 . TMEM186 NM_015421 exon2 c.T466C p.C156R TGGGACAGTATGT . 86.0 53.0 80.0 0.0 . 21 . . . none . . PASS Atlas-SNP PALB2 79728 hgsc.bcm.edu hg19 16 23646629 23646629 + Missense_Mutation SNP G G C novel TCGA-G7-A8LB-01A-11D-A35Z-10 TCGA-G7-A8LB-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f1beace3-f40d-4e2f-abff-815f257096c7 3c8d7f6b-ef32-4955-8113-91d246df62d4 . PALB2 NM_024675 exon4 c.C1238G p.T413R CTTCGTGTTGTTC . 80.0 28.0 91.0 0.0 . 108 . . . none . . PASS Atlas-SNP PDPR 55066 hgsc.bcm.edu hg19 16 70190776 70190776 + Silent SNP G G C novel TCGA-G7-A8LB-01A-11D-A35Z-10 TCGA-G7-A8LB-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f1beace3-f40d-4e2f-abff-815f257096c7 3c8d7f6b-ef32-4955-8113-91d246df62d4 . PDPR NM_017990 exon19 c.G2634C p.G878G ACATGGGAAGTGA . 93.0 36.0 66.0 0.0 . 66 . . . none . . PASS Atlas-SNP ATMIN 23300 hgsc.bcm.edu hg19 16 81077147 81077147 + Silent SNP A A T novel TCGA-G7-A8LB-01A-11D-A35Z-10 TCGA-G7-A8LB-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f1beace3-f40d-4e2f-abff-815f257096c7 3c8d7f6b-ef32-4955-8113-91d246df62d4 . ATMIN NM_015251 exon4 c.A1044T p.V348V GTCAGTAGGAACC . 120.0 42.0 82.0 0.0 . 50 . . . none . . PASS Atlas-SNP TRPV3 162514 hgsc.bcm.edu hg19 17 3446887 3446887 + Missense_Mutation SNP T T C rs372555157 alternate_allele TCGA-G7-A8LB-01A-11D-A35Z-10 TCGA-G7-A8LB-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f1beace3-f40d-4e2f-abff-815f257096c7 3c8d7f6b-ef32-4955-8113-91d246df62d4 . TRPV3 NM_001258205 exon5 c.A347G p.K116R CGCCTCTTTTTCC . 75.0 50.0 70.0 0.0 . 85 . . . alt . . PASS Atlas-SNP RAI1 10743 hgsc.bcm.edu hg19 17 17697105 17697105 + Silent SNP G G A novel TCGA-G7-A8LB-01A-11D-A35Z-10 TCGA-G7-A8LB-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f1beace3-f40d-4e2f-abff-815f257096c7 3c8d7f6b-ef32-4955-8113-91d246df62d4 . RAI1 NM_030665 exon3 c.G843A p.Q281Q GCAGCAGCAGCAG . 87.0 4.0 73.0 0.0 . 121 . . . none . . PASS Atlas-SNP DHX8 1659 hgsc.bcm.edu hg19 17 41576230 41576230 + Missense_Mutation SNP A A T novel TCGA-G7-A8LB-01A-11D-A35Z-10 TCGA-G7-A8LB-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f1beace3-f40d-4e2f-abff-815f257096c7 3c8d7f6b-ef32-4955-8113-91d246df62d4 . DHX8 NM_004941 exon10 c.A1301T p.D434V TTTTAGATGAGGA . 58.0 12.0 65.0 0.0 . 98 . . . none . . PASS Atlas-SNP ADAM11 4185 hgsc.bcm.edu hg19 17 42855411 42855411 + Missense_Mutation SNP C C T rs149116155 TCGA-G7-A8LB-01A-11D-A35Z-10 TCGA-G7-A8LB-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f1beace3-f40d-4e2f-abff-815f257096c7 3c8d7f6b-ef32-4955-8113-91d246df62d4 . ADAM11 NM_002390 exon24 c.C2162T p.T721M CACCCACGGGGGA . 62.0 13.0 79.0 0.0 . 118 . . . weak C|1.000;T|0.000 0.000 PASS Atlas-SNP EPG5 57724 hgsc.bcm.edu hg19 18 43519695 43519695 + Missense_Mutation SNP T T C novel TCGA-G7-A8LB-01A-11D-A35Z-10 TCGA-G7-A8LB-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f1beace3-f40d-4e2f-abff-815f257096c7 3c8d7f6b-ef32-4955-8113-91d246df62d4 . EPG5 NM_020964 exon10 c.A1970G p.H657R GCCCAATGGTCAC . 133.0 51.0 128.0 0.0 . 199 . . . none . . PASS Atlas-SNP CDH19 28513 hgsc.bcm.edu hg19 18 64235858 64235858 + Missense_Mutation SNP T T G novel TCGA-G7-A8LB-01A-11D-A35Z-10 TCGA-G7-A8LB-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f1beace3-f40d-4e2f-abff-815f257096c7 3c8d7f6b-ef32-4955-8113-91d246df62d4 . CDH19 NM_021153 exon3 c.A285C p.R95S ACCTGTTCTTTCA . 104.0 69.0 66.0 0.0 . 141 . . . none . . PASS Atlas-SNP ZNF236 7776 hgsc.bcm.edu hg19 18 74617340 74617340 + Missense_Mutation SNP C C A novel TCGA-G7-A8LB-01A-11D-A35Z-10 TCGA-G7-A8LB-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f1beace3-f40d-4e2f-abff-815f257096c7 3c8d7f6b-ef32-4955-8113-91d246df62d4 . ZNF236 NM_007345 exon13 c.C2260A p.L754I ACTTCACTAAATT . 113.0 35.0 109.0 0.0 . 325 . . . none . . PASS Atlas-SNP CLEC4G 339390 hgsc.bcm.edu hg19 19 7794389 7794389 + Missense_Mutation SNP G G A novel TCGA-G7-A8LB-01A-11D-A35Z-10 TCGA-G7-A8LB-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f1beace3-f40d-4e2f-abff-815f257096c7 3c8d7f6b-ef32-4955-8113-91d246df62d4 . CLEC4G NM_198492 exon9 c.C745T p.H249Y TCCAGTGGCTACA . 31.0 14.0 58.0 0.0 . 18 . . . none . . PASS Atlas-SNP SMARCA4 6597 hgsc.bcm.edu hg19 19 11123641 11123641 + Missense_Mutation SNP G G C novel TCGA-G7-A8LB-01A-11D-A35Z-10 TCGA-G7-A8LB-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f1beace3-f40d-4e2f-abff-815f257096c7 3c8d7f6b-ef32-4955-8113-91d246df62d4 . SMARCA4 NM_003072 exon16 c.G2291C p.W764S TGGAGTGGCTGGT . 83.0 34.0 142.0 0.0 . 502 . . . none . . PASS Atlas-SNP SMARCA4 6597 hgsc.bcm.edu hg19 19 11141507 11141507 + Missense_Mutation SNP G G C novel TCGA-G7-A8LB-01A-11D-A35Z-10 TCGA-G7-A8LB-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f1beace3-f40d-4e2f-abff-815f257096c7 3c8d7f6b-ef32-4955-8113-91d246df62d4 SMARCA4_ENST00000358026,right_upper_lobe,carcinoma,0,2 SMARCA4 NM_003072 exon25 c.G3484C p.G1162R GGGCTCGGCCTGA . 46.0 18.0 83.0 0.0 . 502 . . . none . . PASS Atlas-SNP LPPR2 0 hgsc.bcm.edu hg19 19 11470232 11470232 + Missense_Mutation SNP C C A novel TCGA-G7-A8LB-01A-11D-A35Z-10 TCGA-G7-A8LB-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f1beace3-f40d-4e2f-abff-815f257096c7 3c8d7f6b-ef32-4955-8113-91d246df62d4 . LPPR2 NM_022737 exon4 c.C91A p.L31M GTGATCCTGCTTG . 67.0 37.0 78.0 0.0 . 21 . . . none . . PASS Atlas-SNP UNC13A 23025 hgsc.bcm.edu hg19 19 17759377 17759377 + Missense_Mutation SNP G G A novel TCGA-G7-A8LB-01A-11D-A35Z-10 TCGA-G7-A8LB-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f1beace3-f40d-4e2f-abff-815f257096c7 3c8d7f6b-ef32-4955-8113-91d246df62d4 . UNC13A NM_001080421 exon15 c.C1679T p.T560M GTGGCCGTCCACA . 61.0 31.0 77.0 0.0 . 299 . . . none . . PASS Atlas-SNP RINL 126432 hgsc.bcm.edu hg19 19 39360598 39360598 + Silent SNP G G T novel TCGA-G7-A8LB-01A-11D-A35Z-10 TCGA-G7-A8LB-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f1beace3-f40d-4e2f-abff-815f257096c7 3c8d7f6b-ef32-4955-8113-91d246df62d4 . RINL NM_001195833 exon9 c.C1327A p.R443R CGCCTCGAGCCAG . 53.0 19.0 62.0 0.0 . 32 . . . none . . PASS Atlas-SNP LILRB5 10990 hgsc.bcm.edu hg19 19 54758645 54758645 + Missense_Mutation SNP G G T novel TCGA-G7-A8LB-01A-11D-A35Z-10 TCGA-G7-A8LB-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f1beace3-f40d-4e2f-abff-815f257096c7 3c8d7f6b-ef32-4955-8113-91d246df62d4 . LILRB5 NM_001081442 exon6 c.C1208A p.P403H AGGTAGGGGTAGG . 92.0 4.0 131.0 0.0 . 176 . . . none . . PASS Atlas-SNP TMX4 56255 hgsc.bcm.edu hg19 20 8000101 8000101 + Nonsense_Mutation SNP C C A novel TCGA-G7-A8LB-01A-11D-A35Z-10 TCGA-G7-A8LB-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f1beace3-f40d-4e2f-abff-815f257096c7 3c8d7f6b-ef32-4955-8113-91d246df62d4 . TMX4 NM_021156 exon1 c.G160T p.E54X TCCACTCGCCCTC . 135.0 48.0 141.0 0.0 . 39 . . . none . . PASS Atlas-SNP TM9SF4 9777 hgsc.bcm.edu hg19 20 30720849 30720849 + Silent SNP C C T novel TCGA-G7-A8LB-01A-11D-A35Z-10 TCGA-G7-A8LB-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f1beace3-f40d-4e2f-abff-815f257096c7 3c8d7f6b-ef32-4955-8113-91d246df62d4 . TM9SF4 NM_014742 exon2 c.C49T p.L17L TTCTCCCTGATGT . 91.0 30.0 62.0 0.0 . 65 . . . none . . PASS Atlas-SNP ARFGEF2 10564 hgsc.bcm.edu hg19 20 47585740 47585740 + Silent SNP G G A novel TCGA-G7-A8LB-01A-11D-A35Z-10 TCGA-G7-A8LB-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f1beace3-f40d-4e2f-abff-815f257096c7 3c8d7f6b-ef32-4955-8113-91d246df62d4 . ARFGEF2 NM_006420 exon9 c.G1116A p.K372K GCAGAAGGATGCC . 183.0 8.0 150.0 0.0 . 160 . . . none . . PASS Atlas-SNP ZC3H7B 23264 hgsc.bcm.edu hg19 22 41721848 41721848 + Missense_Mutation SNP T T C novel TCGA-G7-A8LB-01A-11D-A35Z-10 TCGA-G7-A8LB-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f1beace3-f40d-4e2f-abff-815f257096c7 3c8d7f6b-ef32-4955-8113-91d246df62d4 . ZC3H7B NM_017590 exon4 c.T211C p.S71P GCTGCCTCTGACC . 137.0 90.0 134.0 0.0 . 82 . . . none . . PASS Atlas-SNP GTSE1 51512 hgsc.bcm.edu hg19 22 46704331 46704331 + Missense_Mutation SNP G G A novel TCGA-G7-A8LB-01A-11D-A35Z-10 TCGA-G7-A8LB-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f1beace3-f40d-4e2f-abff-815f257096c7 3c8d7f6b-ef32-4955-8113-91d246df62d4 . GTSE1 NM_016426 exon4 c.G253A p.E85K ACATCTGAGAGTC . 118.0 68.0 126.0 0.0 . 100 . . . none . . PASS Atlas-SNP SHANK3 85358 hgsc.bcm.edu hg19 22 51159620 51159620 + Missense_Mutation SNP C C T novel TCGA-G7-A8LB-01A-11D-A35Z-10 TCGA-G7-A8LB-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f1beace3-f40d-4e2f-abff-815f257096c7 3c8d7f6b-ef32-4955-8113-91d246df62d4 . SHANK3 NM_033517 exon21 c.C3317T p.A1106V CTCTGGCCTCCCA . 61.0 40.0 63.0 0.0 . 96 . . . none . . PASS Atlas-SNP NRK 203447 hgsc.bcm.edu hg19 X 105199587 105199587 + Missense_Mutation SNP G G A novel TCGA-G7-A8LB-01A-11D-A35Z-10 TCGA-G7-A8LB-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f1beace3-f40d-4e2f-abff-815f257096c7 3c8d7f6b-ef32-4955-8113-91d246df62d4 . NRK NM_198465 exon29 c.G4744A p.V1582I TATGATGTCTAAA . 92.0 87.0 136.0 0.0 . 321 . . . none . . PASS Atlas-SNP RGAG1 57529 hgsc.bcm.edu hg19 X 109694786 109694786 + Missense_Mutation SNP C C T novel TCGA-G7-A8LB-01A-11D-A35Z-10 TCGA-G7-A8LB-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f1beace3-f40d-4e2f-abff-815f257096c7 3c8d7f6b-ef32-4955-8113-91d246df62d4 . RGAG1 NM_020769 exon3 c.C941T p.S314F TGTCATCTCCAGG . 44.0 43.0 68.0 0.0 . 168 . . . none . . PASS Atlas-SNP EXOC4 60412 hgsc.bcm.edu hg19 7 133059613 133059615 + In_Frame_Del DEL GAC GAC - novel TCGA-G7-A8LB-01A-11D-A35Z-10 TCGA-G7-A8LB-10A-01D-A35Z-10 GAC GAC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f1beace3-f40d-4e2f-abff-815f257096c7 3c8d7f6b-ef32-4955-8113-91d246df62d4 . EXOC4 NM_021807 exon7 c.1038_1040del p.346_347del . . 63.0 38.0 65.0 0.0 . 118 . 0.603175 0 none . . PASS Atlas-Indel,Pindel DDX11 1663 hgsc.bcm.edu hg19 12 31237572 31237572 + Frame_Shift_Del DEL G G - novel TCGA-G7-A8LB-01A-11D-A35Z-10 TCGA-G7-A8LB-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f1beace3-f40d-4e2f-abff-815f257096c7 3c8d7f6b-ef32-4955-8113-91d246df62d4 . DDX11 NM_030653 exon4 c.448delA p.R150fs . . 340.0 85.0 355.0 0.0 . 188 . 0.25 0 none . . PASS Atlas-Indel,Pindel IL21R 50615 hgsc.bcm.edu hg19 16 27448951 27448954 + Frame_Shift_Del DEL ACAG ACAG - novel TCGA-G7-A8LB-01A-11D-A35Z-10 TCGA-G7-A8LB-10A-01D-A35Z-10 ACAG ACAG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f1beace3-f40d-4e2f-abff-815f257096c7 3c8d7f6b-ef32-4955-8113-91d246df62d4 . IL21R NM_181079 exon5 c.360_363del p.120_121del . . 98.0 51.0 108.0 0.0 . 95 . 0.520408 0 none . . PASS Atlas-Indel,Pindel CDC37L1 55664 hgsc.bcm.edu hg19 9 4701924 4701925 + Frame_Shift_Ins INS - - T novel TCGA-G7-A8LB-01A-11D-A35Z-10 TCGA-G7-A8LB-10A-01D-A35Z-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f1beace3-f40d-4e2f-abff-815f257096c7 3c8d7f6b-ef32-4955-8113-91d246df62d4 . CDC37L1 NM_017913 exon6 c.808_809insT p.V270fs . . 51.0 24.0 68.0 0.0 . 19 . 0.470588 0 none . . PASS Atlas-Indel,Pindel ANKRD11 29123 hgsc.bcm.edu hg19 16 89371696 89371696 + Frame_Shift_Del DEL C C - novel TCGA-G7-A8LB-01A-11D-A35Z-10 TCGA-G7-A8LB-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f1beace3-f40d-4e2f-abff-815f257096c7 3c8d7f6b-ef32-4955-8113-91d246df62d4 . ANKRD11 NM_001256182 exon5 c.145delA p.K49fs . . 80.0 24.0 77.0 0.0 . 195 . 0.3 0 none . . PASS Atlas-Indel,Pindel MUC16 94025 hgsc.bcm.edu hg19 19 8969402 8969403 + Frame_Shift_Ins INS - - G novel TCGA-G7-A8LB-01A-11D-A35Z-10 TCGA-G7-A8LB-10A-01D-A35Z-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f1beace3-f40d-4e2f-abff-815f257096c7 3c8d7f6b-ef32-4955-8113-91d246df62d4 . MUC16 NM_024690 exon79 c.42942_42943insC p.P14314fs . . 48.0 22.0 73.0 0.0 . 4315 . 0.458333 0 none . . PASS Atlas-Indel,Pindel UQCRC2 7385 hgsc.bcm.edu hg19 16 21991981 21991981 + Frame_Shift_Del DEL T T - novel TCGA-G7-A8LB-01A-11D-A35Z-10 TCGA-G7-A8LB-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f1beace3-f40d-4e2f-abff-815f257096c7 3c8d7f6b-ef32-4955-8113-91d246df62d4 . UQCRC2 NM_003366 exon13 c.1237delC p.L413fs . . 79.0 20.0 73.0 0.0 . 46 . 0.253165 0 none . . PASS Atlas-Indel,Pindel MSH2 4436 hgsc.bcm.edu hg19 2 47693891 47693892 + Frame_Shift_Ins INS - - A novel TCGA-G7-A8LB-01A-11D-A35Z-10 TCGA-G7-A8LB-10A-01D-A35Z-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f1beace3-f40d-4e2f-abff-815f257096c7 3c8d7f6b-ef32-4955-8113-91d246df62d4 . MSH2 NM_000251 exon10 c.1605_1606insA p.N535fs . . 314.0 152.0 464.0 0.0 . 198 . 0.484076 0 none . . PASS Atlas-Indel,Pindel DBF4 10926 hgsc.bcm.edu hg19 7 87516694 87516695 + Frame_Shift_Del DEL AA AA - novel TCGA-G7-A8LB-01A-11D-A35Z-10 TCGA-G7-A8LB-10A-01D-A35Z-10 AA AA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f1beace3-f40d-4e2f-abff-815f257096c7 3c8d7f6b-ef32-4955-8113-91d246df62d4 . DBF4 NM_006716 exon5 c.500_501del p.167_167del . . 223.0 131.0 200.0 0.0 . 67 . 0.587444 0 none . . PASS Atlas-Indel,Pindel HSD17B8 7923 hgsc.bcm.edu hg19 6 33173952 33173953 + Frame_Shift_Del DEL GG GG - novel TCGA-G7-A8LB-01A-11D-A35Z-10 TCGA-G7-A8LB-10A-01D-A35Z-10 GG GG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f1beace3-f40d-4e2f-abff-815f257096c7 3c8d7f6b-ef32-4955-8113-91d246df62d4 . HSD17B8 NM_014234 exon7 c.692_693del p.231_231del . . 82.0 42.0 149.0 0.0 . 20 . 0.512195 0 none . . PASS Atlas-Indel,Pindel PCK1 5105 hgsc.bcm.edu hg19 20 56138649 56138651 + In_Frame_Del DEL AGA AGA - novel TCGA-G7-A8LB-01A-11D-A35Z-10 TCGA-G7-A8LB-10A-01D-A35Z-10 AGA AGA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f1beace3-f40d-4e2f-abff-815f257096c7 3c8d7f6b-ef32-4955-8113-91d246df62d4 . PCK1 NM_002591 exon6 c.826_828del p.276_276del . . 136.0 40.0 106.0 0.0 . 95 . 0.294118 0 none . . PASS Atlas-Indel,Pindel POLN 353497 hgsc.bcm.edu hg19 4 2210096 2210125 + In_Frame_Del DEL GAGCTGATGCTCTTCTGTTTTTGGTCAGCA GAGCTGATGCTCTTCTGTTTTTGGTCAGCA - novel TCGA-G7-A8LB-01A-11D-A35Z-10 TCGA-G7-A8LB-10A-01D-A35Z-10 GAGCTGATGCTCTTCTGTTTTTGGTCAGCA GAGCTGATGCTCTTCTGTTTTTGGTCAGCA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f1beace3-f40d-4e2f-abff-815f257096c7 3c8d7f6b-ef32-4955-8113-91d246df62d4 . POLN NM_181808 exon3 c.304_333del p.102_111del . . 38.0 13.0 71.0 0.0 . 82 . 0.342105 0 none . . PASS Atlas-Indel,Pindel ACP2 53 hgsc.bcm.edu hg19 11 47264636 47264637 + Frame_Shift_Ins INS - - A novel TCGA-G7-A8LB-01A-11D-A35Z-10 TCGA-G7-A8LB-10A-01D-A35Z-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f1beace3-f40d-4e2f-abff-815f257096c7 3c8d7f6b-ef32-4955-8113-91d246df62d4 . ACP2 NM_001610 exon9 c.895_896insT p.V299fs . . 58.0 26.0 89.0 0.0 . 36 . 0.448276 0 none . . PASS Atlas-Indel,Pindel NIPAL4 348938 hgsc.bcm.edu hg19 5 156899945 156899945 + Frame_Shift_Del DEL A A - novel TCGA-G7-A8LB-01A-11D-A35Z-10 TCGA-G7-A8LB-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f1beace3-f40d-4e2f-abff-815f257096c7 3c8d7f6b-ef32-4955-8113-91d246df62d4 . NIPAL4 NM_001099287 exon6 c.1377delC p.P459fs . . 27.0 13.0 31.0 0.0 . 48 . 0.481481 0 none . . PASS Atlas-Indel,Pindel ATAD2B 54454 hgsc.bcm.edu hg19 2 24086371 24086371 + Frame_Shift_Del DEL T T - novel TCGA-G7-A8LB-01A-11D-A35Z-10 TCGA-G7-A8LB-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f1beace3-f40d-4e2f-abff-815f257096c7 3c8d7f6b-ef32-4955-8113-91d246df62d4 . ATAD2B NM_017552 exon12 c.1360delT p.L454X . . 191.0 91.0 208.0 0.0 . 110 . 0.47644 0 none . . PASS Atlas-Indel,Pindel KCNH3 23416 hgsc.bcm.edu hg19 12 49942954 49942955 + Frame_Shift_Ins INS - - CGGTGAGCCC novel TCGA-G7-A8LB-01A-11D-A35Z-10 TCGA-G7-A8LB-10A-01D-A35Z-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f1beace3-f40d-4e2f-abff-815f257096c7 3c8d7f6b-ef32-4955-8113-91d246df62d4 . KCNH3 NM_012284 exon8 c.1466_1467insCGGTGAGCCC p.G489fs . . 61.0 10.0 68.0 0.0 . 88 . 0.163934 0 none . . PASS Atlas-Indel,Pindel PLCD1 5333 hgsc.bcm.edu hg19 3 38070995 38071000 + Frame_Shift_Del DEL TCACCG TCACCG - novel TCGA-G7-A8LB-01A-11D-A35Z-10 TCGA-G7-A8LB-10A-01D-A35Z-10 TCACCG TCACCG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f1beace3-f40d-4e2f-abff-815f257096c7 3c8d7f6b-ef32-4955-8113-91d246df62d4 . PLCD1 NM_006225 exon1 c.34_34del p.12_12del . . 118.0 25.0 125.0 0.0 . 87 . 0.211864 0 none . . PASS Atlas-Indel,Pindel