Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq TVarRat NVarRat dbSNP_Strength dbSNP_AF dbSNP_PopFreq Confidence Algorithm HSPG2 3339 hgsc.bcm.edu hg19 1 22180783 22180783 + Silent SNP T T C novel TCGA-F9-A7VF-01A-11D-A33Q-10 TCGA-F9-A7VF-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6f35b843-6207-45fa-b18f-ad0f104f9651 491d7fcd-e412-4f53-a19a-d5d51744cd81 . HSPG2 NM_005529 exon50 c.A6342G p.E2114E CACATATTCTCCA . 73.0 33.0 97.0 0.0 . 311 . . . none . . PASS Atlas-SNP HIVEP3 59269 hgsc.bcm.edu hg19 1 41976929 41976929 + Silent SNP G G T rs146058477 alternate_allele TCGA-F9-A7VF-01A-11D-A33Q-10 TCGA-F9-A7VF-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6f35b843-6207-45fa-b18f-ad0f104f9651 491d7fcd-e412-4f53-a19a-d5d51744cd81 . HIVEP3 NM_024503 exon9 c.C6414A p.A2138A GGACTCGGCCTTC . 33.0 17.0 37.0 0.0 . 235 . . . alt G|1.000;A|0.000 . PASS Atlas-SNP ZSWIM5 57643 hgsc.bcm.edu hg19 1 45485775 45485775 + Silent SNP C C T novel TCGA-F9-A7VF-01A-11D-A33Q-10 TCGA-F9-A7VF-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6f35b843-6207-45fa-b18f-ad0f104f9651 491d7fcd-e412-4f53-a19a-d5d51744cd81 . ZSWIM5 NM_020883 exon13 c.G2658A p.E886E TACCATCTCCCTG . 85.0 33.0 114.0 0.0 . 72 . . . none . . PASS Atlas-SNP DDX20 11218 hgsc.bcm.edu hg19 1 112299342 112299342 + Missense_Mutation SNP C C T novel TCGA-F9-A7VF-01A-11D-A33Q-10 TCGA-F9-A7VF-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6f35b843-6207-45fa-b18f-ad0f104f9651 491d7fcd-e412-4f53-a19a-d5d51744cd81 . DDX20 NM_007204 exon2 c.C376T p.L126F CTTGTTCTTGAAA . 96.0 47.0 119.0 0.0 . 50 . . . none . . PASS Atlas-SNP RFX5 5993 hgsc.bcm.edu hg19 1 151317225 151317225 + Missense_Mutation SNP T T A novel TCGA-F9-A7VF-01A-11D-A33Q-10 TCGA-F9-A7VF-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6f35b843-6207-45fa-b18f-ad0f104f9651 491d7fcd-e412-4f53-a19a-d5d51744cd81 . RFX5 NM_000449 exon6 c.A332T p.Q111L ACACTTTGCTTTG . 123.0 54.0 124.0 0.0 . 69 . . . none . . PASS Atlas-SNP FLG 2312 hgsc.bcm.edu hg19 1 152284898 152284898 + Missense_Mutation SNP G G T novel TCGA-F9-A7VF-01A-11D-A33Q-10 TCGA-F9-A7VF-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6f35b843-6207-45fa-b18f-ad0f104f9651 491d7fcd-e412-4f53-a19a-d5d51744cd81 FLG,NS,lymphoid_neoplasm,0,1 FLG NM_002016 exon3 c.C2464A p.H822N GCTCATGGTGGGA . 95.0 33.0 103.0 0.0 . 900 . . . none . . PASS Atlas-SNP F5 2153 hgsc.bcm.edu hg19 1 169519125 169519125 + Missense_Mutation SNP C C T novel TCGA-F9-A7VF-01A-11D-A33Q-10 TCGA-F9-A7VF-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6f35b843-6207-45fa-b18f-ad0f104f9651 491d7fcd-e412-4f53-a19a-d5d51744cd81 . F5 NM_000130 exon10 c.G1525A p.V509M TGTCCACGTCACT . 120.0 43.0 152.0 0.0 . 301 . . . none . . PASS Atlas-SNP BAZ2B 29994 hgsc.bcm.edu hg19 2 160206448 160206448 + Missense_Mutation SNP T T C rs200214529 bycluster TCGA-F9-A7VF-01A-11D-A33Q-10 TCGA-F9-A7VF-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6f35b843-6207-45fa-b18f-ad0f104f9651 491d7fcd-e412-4f53-a19a-d5d51744cd81 . BAZ2B NM_013450 exon28 c.A4634G p.N1545S TGGTCATTGGGGA . 120.0 47.0 117.0 0.0 . 196 . . . weak . . PASS Atlas-SNP XIRP2 129446 hgsc.bcm.edu hg19 2 168105464 168105464 + Missense_Mutation SNP C C T novel TCGA-F9-A7VF-01A-11D-A33Q-10 TCGA-F9-A7VF-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6f35b843-6207-45fa-b18f-ad0f104f9651 491d7fcd-e412-4f53-a19a-d5d51744cd81 XIRP2,axilla,malignant_melanoma,0,1 XIRP2 NM_152381 exon9 c.C7562T p.S2521F TAAAATCTCATTC . 234.0 80.0 240.0 0.0 . 914 . . . none . . PASS Atlas-SNP TTN 7273 hgsc.bcm.edu hg19 2 179460381 179460381 + Missense_Mutation SNP C C T novel TCGA-F9-A7VF-01A-11D-A33Q-10 TCGA-F9-A7VF-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6f35b843-6207-45fa-b18f-ad0f104f9651 491d7fcd-e412-4f53-a19a-d5d51744cd81 . TTN NM_001267550 exon295 c.G57700A p.V19234M ATGTCACTGGGGT . 171.0 66.0 194.0 0.0 . 18412 . . . none . . PASS Atlas-SNP CCDC150 284992 hgsc.bcm.edu hg19 2 197576887 197576887 + Missense_Mutation SNP G G C novel TCGA-F9-A7VF-01A-11D-A33Q-10 TCGA-F9-A7VF-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6f35b843-6207-45fa-b18f-ad0f104f9651 491d7fcd-e412-4f53-a19a-d5d51744cd81 . CCDC150 NM_001080539 exon16 c.G1714C p.E572Q CAGCTAGAAGAAC . 167.0 65.0 165.0 0.0 . 96 . . . none . . PASS Atlas-SNP SCG2 7857 hgsc.bcm.edu hg19 2 224463934 224463934 + Missense_Mutation SNP A A G novel TCGA-F9-A7VF-01A-11D-A33Q-10 TCGA-F9-A7VF-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6f35b843-6207-45fa-b18f-ad0f104f9651 491d7fcd-e412-4f53-a19a-d5d51744cd81 . SCG2 NM_003469 exon2 c.T67C p.S23P CCCCAGAGATGAG . 195.0 75.0 225.0 0.0 . 99 . . . none . . PASS Atlas-SNP IL17RC 84818 hgsc.bcm.edu hg19 3 9962215 9962215 + Missense_Mutation SNP G G A novel TCGA-F9-A7VF-01A-11D-A33Q-10 TCGA-F9-A7VF-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6f35b843-6207-45fa-b18f-ad0f104f9651 491d7fcd-e412-4f53-a19a-d5d51744cd81 . IL17RC NM_153461 exon6 c.G719A p.S240N TAGGGAGTGAGGT . 99.0 50.0 75.0 0.0 . 55 . . . none . . PASS Atlas-SNP ATP2B2 491 hgsc.bcm.edu hg19 3 10442753 10442753 + Missense_Mutation SNP A A T novel TCGA-F9-A7VF-01A-11D-A33Q-10 TCGA-F9-A7VF-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6f35b843-6207-45fa-b18f-ad0f104f9651 491d7fcd-e412-4f53-a19a-d5d51744cd81 . ATP2B2 NM_001683 exon5 c.T665A p.L222H GCAGGGAGGAGGT . 88.0 22.0 86.0 0.0 . 304 . . . none . . PASS Atlas-SNP ATG7 10533 hgsc.bcm.edu hg19 3 11374553 11374553 + Missense_Mutation SNP T T A novel TCGA-F9-A7VF-01A-11D-A33Q-10 TCGA-F9-A7VF-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6f35b843-6207-45fa-b18f-ad0f104f9651 491d7fcd-e412-4f53-a19a-d5d51744cd81 . ATG7 NM_001136031 exon9 c.T875A p.M292K CAGAAATGGCATT . 110.0 27.0 91.0 0.0 . 56 . . . none . . PASS Atlas-SNP RBM15B 29890 hgsc.bcm.edu hg19 3 51431071 51431071 + Silent SNP C C A novel TCGA-F9-A7VF-01A-11D-A33Q-10 TCGA-F9-A7VF-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6f35b843-6207-45fa-b18f-ad0f104f9651 491d7fcd-e412-4f53-a19a-d5d51744cd81 . RBM15B NM_013286 exon1 c.C2241A p.I747I GGTGATCAGCAGT . 125.0 75.0 79.0 0.0 . 47 . . . none . . PASS Atlas-SNP GRAMD1C 54762 hgsc.bcm.edu hg19 3 113659165 113659165 + Silent SNP C C G novel TCGA-F9-A7VF-01A-11D-A33Q-10 TCGA-F9-A7VF-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6f35b843-6207-45fa-b18f-ad0f104f9651 491d7fcd-e412-4f53-a19a-d5d51744cd81 . GRAMD1C NM_017577 exon17 c.C1881G p.L627L AGTGCTCCGAGAC . 151.0 31.0 112.0 0.0 . 71 . . . none . . PASS Atlas-SNP FAM43A 131583 hgsc.bcm.edu hg19 3 194408012 194408012 + Missense_Mutation SNP T T C novel TCGA-F9-A7VF-01A-11D-A33Q-10 TCGA-F9-A7VF-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6f35b843-6207-45fa-b18f-ad0f104f9651 491d7fcd-e412-4f53-a19a-d5d51744cd81 . FAM43A NM_153690 exon1 c.T457C p.F153L AAGGTCTTCGCCT . 23.0 10.0 13.0 0.0 . 24 . . . none . . PASS Atlas-SNP MAEA 10296 hgsc.bcm.edu hg19 4 1305935 1305935 + Missense_Mutation SNP G G C rs146286709 alternate_allele TCGA-F9-A7VF-01A-11D-A33Q-10 TCGA-F9-A7VF-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6f35b843-6207-45fa-b18f-ad0f104f9651 491d7fcd-e412-4f53-a19a-d5d51744cd81 . MAEA NM_005882 exon2 c.G238C p.V80L CTCAGCGTCCTCA . 67.0 21.0 122.0 0.0 . 39 . . . alt G|1.000;A|0.000 . PASS Atlas-SNP SH3TC1 54436 hgsc.bcm.edu hg19 4 8229479 8229479 + Silent SNP C C T novel TCGA-F9-A7VF-01A-11D-A33Q-10 TCGA-F9-A7VF-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6f35b843-6207-45fa-b18f-ad0f104f9651 491d7fcd-e412-4f53-a19a-d5d51744cd81 . SH3TC1 NM_018986 exon12 c.C2058T p.P686P CCTGCCCTTCCTA . 42.0 13.0 87.0 0.0 . 105 . . . none . . PASS Atlas-SNP HS3ST1 9957 hgsc.bcm.edu hg19 4 11401470 11401470 + Missense_Mutation SNP A A T rs183663781 bycluster;by1000genomes;alternate_allele TCGA-F9-A7VF-01A-11D-A33Q-10 TCGA-F9-A7VF-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6f35b843-6207-45fa-b18f-ad0f104f9651 491d7fcd-e412-4f53-a19a-d5d51744cd81 . HS3ST1 NM_005114 exon2 c.T160A p.L54M GCGGCAACTGCTG . 30.0 13.0 49.0 0.0 . 41 . . . alt A|0.999;C|0.001 . PASS Atlas-SNP COQ2 27235 hgsc.bcm.edu hg19 4 84185397 84185397 + Silent SNP C C T novel TCGA-F9-A7VF-01A-11D-A33Q-10 TCGA-F9-A7VF-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6f35b843-6207-45fa-b18f-ad0f104f9651 491d7fcd-e412-4f53-a19a-d5d51744cd81 . COQ2 NM_015697 exon7 c.G1221A p.K407K GTCTGTCTTCTTT . 201.0 71.0 249.0 0.0 . 22 . . . none . . PASS Atlas-SNP PCDH18 54510 hgsc.bcm.edu hg19 4 138452946 138452946 + Silent SNP C C T novel TCGA-F9-A7VF-01A-11D-A33Q-10 TCGA-F9-A7VF-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6f35b843-6207-45fa-b18f-ad0f104f9651 491d7fcd-e412-4f53-a19a-d5d51744cd81 PCDH18,NS,carcinoma,0,1 PCDH18 NM_019035 exon1 c.G297A p.Q99Q GTTTTTCTGGCAC . 89.0 33.0 134.0 0.0 . 229 . . . none . . PASS Atlas-SNP PPID 5481 hgsc.bcm.edu hg19 4 159634384 159634384 + Nonsense_Mutation SNP C C A novel TCGA-F9-A7VF-01A-11D-A33Q-10 TCGA-F9-A7VF-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6f35b843-6207-45fa-b18f-ad0f104f9651 491d7fcd-e412-4f53-a19a-d5d51744cd81 . PPID NM_005038 exon7 c.G781T p.E261X CTGTCTCAATAAC . 77.0 34.0 86.0 0.0 . 22 . . . none . . PASS Atlas-SNP PKD2L2 27039 hgsc.bcm.edu hg19 5 137271569 137271569 + Nonsense_Mutation SNP C C G novel TCGA-F9-A7VF-01A-11D-A33Q-10 TCGA-F9-A7VF-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6f35b843-6207-45fa-b18f-ad0f104f9651 491d7fcd-e412-4f53-a19a-d5d51744cd81 . PKD2L2 NM_014386 exon13 c.C1755G p.Y585X TGACTACCAGCCT . 56.0 22.0 62.0 0.0 . 68 . . . none . . PASS Atlas-SNP F12 2161 hgsc.bcm.edu hg19 5 176831557 176831557 + Missense_Mutation SNP C C A novel TCGA-F9-A7VF-01A-11D-A33Q-10 TCGA-F9-A7VF-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6f35b843-6207-45fa-b18f-ad0f104f9651 491d7fcd-e412-4f53-a19a-d5d51744cd81 . F12 NM_000505 exon8 c.G743T p.R248L ACGTTCCGGTAGG . 34.0 18.0 42.0 0.0 . 35 . . . none . . PASS Atlas-SNP ITPR3 3710 hgsc.bcm.edu hg19 6 33638181 33638181 + Missense_Mutation SNP G G T novel TCGA-F9-A7VF-01A-11D-A33Q-10 TCGA-F9-A7VF-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6f35b843-6207-45fa-b18f-ad0f104f9651 491d7fcd-e412-4f53-a19a-d5d51744cd81 . ITPR3 NM_002224 exon19 c.G2269T p.V757L CTGGGCGTGGACC . 52.0 46.0 67.0 0.0 . 409 . . . none . . PASS Atlas-SNP ACTB 60 hgsc.bcm.edu hg19 7 5567773 5567773 + Silent SNP G G A novel TCGA-F9-A7VF-01A-11D-A33Q-10 TCGA-F9-A7VF-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6f35b843-6207-45fa-b18f-ad0f104f9651 491d7fcd-e412-4f53-a19a-d5d51744cd81 . ACTB NM_001101 exon5 c.C846T p.I282I CTTCATGATGGAG . 90.0 27.0 68.0 0.0 . 45 . . . none . . PASS Atlas-SNP C7orf63 79846 hgsc.bcm.edu hg19 7 89903320 89903320 + Nonsense_Mutation SNP A A T novel TCGA-F9-A7VF-01A-11D-A33Q-10 TCGA-F9-A7VF-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6f35b843-6207-45fa-b18f-ad0f104f9651 491d7fcd-e412-4f53-a19a-d5d51744cd81 . C7orf63 NM_001039706 exon9 c.A880T p.K294X GTATTTAAAAATC . 272.0 140.0 208.0 1.0 . 158 . . . none . . PASS Atlas-SNP CCDC132 55610 hgsc.bcm.edu hg19 7 92905642 92905642 + Missense_Mutation SNP C C T novel TCGA-F9-A7VF-01A-11D-A33Q-10 TCGA-F9-A7VF-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6f35b843-6207-45fa-b18f-ad0f104f9651 491d7fcd-e412-4f53-a19a-d5d51744cd81 . CCDC132 NM_024553 exon12 c.C967T p.H323Y ACTATTCATATAT . 78.0 15.0 62.0 0.0 . 136 . . . none . . PASS Atlas-SNP TRIM56 81844 hgsc.bcm.edu hg19 7 100732116 100732116 + Missense_Mutation SNP C C T novel TCGA-F9-A7VF-01A-11D-A33Q-10 TCGA-F9-A7VF-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6f35b843-6207-45fa-b18f-ad0f104f9651 491d7fcd-e412-4f53-a19a-d5d51744cd81 TRIM56_ENST00000306085,right_lower_lobe,carcinoma,0,2 TRIM56 NM_030961 exon3 c.C1523T p.P508L GGTCCCCCCGGAT . 98.0 32.0 67.0 0.0 . 123 . . . none . . PASS Atlas-SNP CHRM2 1129 hgsc.bcm.edu hg19 7 136700128 136700128 + Silent SNP G G A novel TCGA-F9-A7VF-01A-11D-A33Q-10 TCGA-F9-A7VF-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6f35b843-6207-45fa-b18f-ad0f104f9651 491d7fcd-e412-4f53-a19a-d5d51744cd81 CHRM2,NS,carcinoma,0,1 CHRM2 NM_001006632 exon3 c.G516A p.E172E TGTGGAGGATGGG . 101.0 25.0 64.0 0.0 . 167 . . . none . . PASS Atlas-SNP PLEC 5339 hgsc.bcm.edu hg19 8 144990855 144990855 + Missense_Mutation SNP C C A novel TCGA-F9-A7VF-01A-11D-A33Q-10 TCGA-F9-A7VF-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6f35b843-6207-45fa-b18f-ad0f104f9651 491d7fcd-e412-4f53-a19a-d5d51744cd81 . PLEC NM_201380 exon32 c.G13545T p.W4515C GTAGAGCCAGCCC . 33.0 17.0 45.0 0.0 . 1144 . . . none . . PASS Atlas-SNP GDA 9615 hgsc.bcm.edu hg19 9 74828909 74828909 + Splice_Site SNP T T A novel TCGA-F9-A7VF-01A-11D-A33Q-10 TCGA-F9-A7VF-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6f35b843-6207-45fa-b18f-ad0f104f9651 491d7fcd-e412-4f53-a19a-d5d51744cd81 . GDA NM_001242507 exon5 c.356+2T>A . GAGAGGTAAAAGG . 106.0 45.0 134.0 0.0 . 113 . . . none . . PASS Atlas-SNP PCSK5 5125 hgsc.bcm.edu hg19 9 78710821 78710821 + Missense_Mutation SNP G G C novel TCGA-F9-A7VF-01A-11D-A33Q-10 TCGA-F9-A7VF-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6f35b843-6207-45fa-b18f-ad0f104f9651 491d7fcd-e412-4f53-a19a-d5d51744cd81 . PCSK5 NM_006200 exon8 c.G910C p.G304R GGCCTCGGCTCTG . 81.0 32.0 99.0 0.0 . 329 . . . none . . PASS Atlas-SNP PCSK5 5125 hgsc.bcm.edu hg19 9 78710822 78710822 + Missense_Mutation SNP G G A novel TCGA-F9-A7VF-01A-11D-A33Q-10 TCGA-F9-A7VF-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6f35b843-6207-45fa-b18f-ad0f104f9651 491d7fcd-e412-4f53-a19a-d5d51744cd81 . PCSK5 NM_006200 exon8 c.G911A p.G304D GCCTCGGCTCTGT . 82.0 31.0 101.0 0.0 . 329 . . . none . . PASS Atlas-SNP CDK5RAP2 55755 hgsc.bcm.edu hg19 9 123216128 123216128 + Missense_Mutation SNP C C T novel TCGA-F9-A7VF-01A-11D-A33Q-10 TCGA-F9-A7VF-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6f35b843-6207-45fa-b18f-ad0f104f9651 491d7fcd-e412-4f53-a19a-d5d51744cd81 . CDK5RAP2 NM_018249 exon21 c.G2399A p.R800Q AGTTCCCGTACCA . 116.0 42.0 106.0 0.0 . 157 . . . none . . PASS Atlas-SNP PRRC2B 84726 hgsc.bcm.edu hg19 9 134305606 134305606 + Missense_Mutation SNP T T A novel TCGA-F9-A7VF-01A-11D-A33Q-10 TCGA-F9-A7VF-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6f35b843-6207-45fa-b18f-ad0f104f9651 491d7fcd-e412-4f53-a19a-d5d51744cd81 . PRRC2B NM_013318 exon1 c.T75A p.D25E GTTTGATAAGTAT . 135.0 64.0 139.0 0.0 . 266 . . . none . . PASS Atlas-SNP EBF3 253738 hgsc.bcm.edu hg19 10 131757260 131757260 + Nonsense_Mutation SNP G G C novel TCGA-F9-A7VF-01A-11D-A33Q-10 TCGA-F9-A7VF-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6f35b843-6207-45fa-b18f-ad0f104f9651 491d7fcd-e412-4f53-a19a-d5d51744cd81 . EBF3 NM_001005463 exon5 c.C423G p.Y141X GCCCTCGTAGACG . 94.0 45.0 108.0 0.0 . 193 . . . none . . PASS Atlas-SNP TTC40 54777 hgsc.bcm.edu hg19 10 134646865 134646865 + Missense_Mutation SNP T T G novel TCGA-F9-A7VF-01A-11D-A33Q-10 TCGA-F9-A7VF-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6f35b843-6207-45fa-b18f-ad0f104f9651 491d7fcd-e412-4f53-a19a-d5d51744cd81 . TTC40 NM_001200049 exon50 c.A7114C p.T2372P TACCTGTCTCTTC . 124.0 51.0 163.0 0.0 . 100 . . . none . . PASS Atlas-SNP SIGIRR 59307 hgsc.bcm.edu hg19 11 407106 407106 + Silent SNP A A G novel TCGA-F9-A7VF-01A-11D-A33Q-10 TCGA-F9-A7VF-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6f35b843-6207-45fa-b18f-ad0f104f9651 491d7fcd-e412-4f53-a19a-d5d51744cd81 . SIGIRR NM_001135053 exon7 c.T684C p.L228L GTCCGAAAGCACC . 25.0 13.0 34.0 0.0 . 22 . . . none . . PASS Atlas-SNP OR5T2 219464 hgsc.bcm.edu hg19 11 56000203 56000203 + Silent SNP G G A novel TCGA-F9-A7VF-01A-11D-A33Q-10 TCGA-F9-A7VF-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6f35b843-6207-45fa-b18f-ad0f104f9651 491d7fcd-e412-4f53-a19a-d5d51744cd81 . OR5T2 NM_001004746 exon1 c.C459T p.L153L AGCCAAGAGAAAG . 91.0 37.0 107.0 0.0 . 107 . . . none . . PASS Atlas-SNP FAM86C1 55199 hgsc.bcm.edu hg19 11 71507154 71507154 + Missense_Mutation SNP C C A novel TCGA-F9-A7VF-01A-11D-A33Q-10 TCGA-F9-A7VF-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6f35b843-6207-45fa-b18f-ad0f104f9651 491d7fcd-e412-4f53-a19a-d5d51744cd81 . FAM86C1 NM_018172 exon4 c.C353A p.S118Y TCAATTCTACATG . 86.0 37.0 124.0 0.0 . 27 . . . none . . PASS Atlas-SNP GIT2 9815 hgsc.bcm.edu hg19 12 110390969 110390969 + Silent SNP G G A novel TCGA-F9-A7VF-01A-11D-A33Q-10 TCGA-F9-A7VF-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6f35b843-6207-45fa-b18f-ad0f104f9651 491d7fcd-e412-4f53-a19a-d5d51744cd81 . GIT2 NM_001135213 exon14 c.C1176T p.P392P ATAGTCGGGCTGA . 90.0 46.0 84.0 0.0 . 81 . . . none . . PASS Atlas-SNP MYCBP2 23077 hgsc.bcm.edu hg19 13 77732194 77732194 + Silent SNP A A G novel TCGA-F9-A7VF-01A-11D-A33Q-10 TCGA-F9-A7VF-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6f35b843-6207-45fa-b18f-ad0f104f9651 491d7fcd-e412-4f53-a19a-d5d51744cd81 . MYCBP2 NM_015057 exon45 c.T6648C p.H2216H TGGTGAATGAGAA . 101.0 36.0 100.0 0.0 . 1029 . . . none . . PASS Atlas-SNP OR11H4 390442 hgsc.bcm.edu hg19 14 20711302 20711302 + Nonsense_Mutation SNP G G T novel TCGA-F9-A7VF-01A-11D-A33Q-10 TCGA-F9-A7VF-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6f35b843-6207-45fa-b18f-ad0f104f9651 491d7fcd-e412-4f53-a19a-d5d51744cd81 . OR11H4 NM_001004479 exon1 c.G352T p.G118X TCACTGGGAACAA . 68.0 4.0 91.0 0.0 . 63 . . . none . . PASS Atlas-SNP MYH7 4625 hgsc.bcm.edu hg19 14 23900190 23900190 + Missense_Mutation SNP C C T novel TCGA-F9-A7VF-01A-11D-A33Q-10 TCGA-F9-A7VF-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6f35b843-6207-45fa-b18f-ad0f104f9651 491d7fcd-e412-4f53-a19a-d5d51744cd81 . MYH7 NM_000257 exon10 c.G815A p.R272K ATAACTCTGGATT . 29.0 15.0 36.0 0.0 . 349 . . . none . . PASS Atlas-SNP ADCY4 196883 hgsc.bcm.edu hg19 14 24798392 24798392 + Missense_Mutation SNP G G A novel TCGA-F9-A7VF-01A-11D-A33Q-10 TCGA-F9-A7VF-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6f35b843-6207-45fa-b18f-ad0f104f9651 491d7fcd-e412-4f53-a19a-d5d51744cd81 . ADCY4 NM_001198592 exon11 c.C1399T p.L467F CCTCAAGCGAGGA . 64.0 27.0 96.0 0.0 . 86 . . . none . . PASS Atlas-SNP HEATR5A 25938 hgsc.bcm.edu hg19 14 31771694 31771694 + Silent SNP G G A novel TCGA-F9-A7VF-01A-11D-A33Q-10 TCGA-F9-A7VF-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6f35b843-6207-45fa-b18f-ad0f104f9651 491d7fcd-e412-4f53-a19a-d5d51744cd81 . HEATR5A NM_015473 exon33 c.C5271T p.Y1757Y TGTGAGGTACAAT . 87.0 33.0 107.0 0.0 . 181 . . . none . . PASS Atlas-SNP CALM1 801 hgsc.bcm.edu hg19 14 90870770 90870770 + Silent SNP A A C novel TCGA-F9-A7VF-01A-11D-A33Q-10 TCGA-F9-A7VF-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6f35b843-6207-45fa-b18f-ad0f104f9651 491d7fcd-e412-4f53-a19a-d5d51744cd81 . CALM1 NM_006888 exon5 c.A333C p.T111T CATGACAAACTTA . 197.0 96.0 213.0 0.0 . 16 . . . none . . PASS Atlas-SNP HERC2 8924 hgsc.bcm.edu hg19 15 28380665 28380665 + Missense_Mutation SNP C C G novel TCGA-F9-A7VF-01A-11D-A33Q-10 TCGA-F9-A7VF-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6f35b843-6207-45fa-b18f-ad0f104f9651 491d7fcd-e412-4f53-a19a-d5d51744cd81 . HERC2 NM_004667 exon79 c.G12189C p.W4063C CTCACCCCAAGAG . 134.0 54.0 156.0 0.0 . 501 . . . none . . PASS Atlas-SNP RNF111 54778 hgsc.bcm.edu hg19 15 59350658 59350658 + Silent SNP T T A novel TCGA-F9-A7VF-01A-11D-A33Q-10 TCGA-F9-A7VF-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6f35b843-6207-45fa-b18f-ad0f104f9651 491d7fcd-e412-4f53-a19a-d5d51744cd81 . RNF111 NM_017610 exon5 c.T1275A p.T425T TGATACTGCTTCA . 80.0 27.0 99.0 0.0 . 179 . . . none . . PASS Atlas-SNP LACTB 114294 hgsc.bcm.edu hg19 15 63419075 63419075 + Missense_Mutation SNP G G T novel TCGA-F9-A7VF-01A-11D-A33Q-10 TCGA-F9-A7VF-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6f35b843-6207-45fa-b18f-ad0f104f9651 491d7fcd-e412-4f53-a19a-d5d51744cd81 . LACTB NM_171846 exon3 c.G442T p.V148F GCTGATGTTGAGA . 90.0 42.0 142.0 0.0 . 29 . . . none . . PASS Atlas-SNP TRAP1 10131 hgsc.bcm.edu hg19 16 3727498 3727498 + Splice_Site SNP C C G novel TCGA-F9-A7VF-01A-11D-A33Q-10 TCGA-F9-A7VF-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6f35b843-6207-45fa-b18f-ad0f104f9651 491d7fcd-e412-4f53-a19a-d5d51744cd81 . TRAP1 NM_001272049 exon6 c.545+1G>C . CACTCACCCATCT . 79.0 29.0 67.0 0.0 . 53 . . . none . . PASS Atlas-SNP IL4R 3566 hgsc.bcm.edu hg19 16 27375041 27375041 + Missense_Mutation SNP A A G novel TCGA-F9-A7VF-01A-11D-A33Q-10 TCGA-F9-A7VF-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6f35b843-6207-45fa-b18f-ad0f104f9651 491d7fcd-e412-4f53-a19a-d5d51744cd81 . IL4R NM_000418 exon11 c.A2368G p.K790E AAGAGTAAATCCT . 40.0 12.0 39.0 0.0 . 70 . . . none . . PASS Atlas-SNP HAS3 3038 hgsc.bcm.edu hg19 16 69148783 69148783 + Missense_Mutation SNP T T C novel TCGA-F9-A7VF-01A-11D-A33Q-10 TCGA-F9-A7VF-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6f35b843-6207-45fa-b18f-ad0f104f9651 491d7fcd-e412-4f53-a19a-d5d51744cd81 . HAS3 NM_005329 exon4 c.T1276C p.Y426H GCCACCTACGCCT . 82.0 37.0 77.0 0.0 . 61 . . . none . . PASS Atlas-SNP TRPV1 7442 hgsc.bcm.edu hg19 17 3480920 3480920 + Missense_Mutation SNP A A G novel TCGA-F9-A7VF-01A-11D-A33Q-10 TCGA-F9-A7VF-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6f35b843-6207-45fa-b18f-ad0f104f9651 491d7fcd-e412-4f53-a19a-d5d51744cd81 . TRPV1 NM_018727 exon11 c.T1685C p.M562T ATGCCCATCTGCT . 129.0 39.0 129.0 0.0 . 99 . . . none . . PASS Atlas-SNP SLC6A4 6532 hgsc.bcm.edu hg19 17 28534784 28534784 + Missense_Mutation SNP A A T novel TCGA-F9-A7VF-01A-11D-A33Q-10 TCGA-F9-A7VF-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6f35b843-6207-45fa-b18f-ad0f104f9651 491d7fcd-e412-4f53-a19a-d5d51744cd81 . SLC6A4 NM_001045 exon13 c.T1616A p.I539N CAGCAGATCCTCC . 141.0 87.0 110.0 0.0 . 60 . . . none . . PASS Atlas-SNP DDX5 1655 hgsc.bcm.edu hg19 17 62499923 62499923 + Missense_Mutation SNP T T C novel TCGA-F9-A7VF-01A-11D-A33Q-10 TCGA-F9-A7VF-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6f35b843-6207-45fa-b18f-ad0f104f9651 491d7fcd-e412-4f53-a19a-d5d51744cd81 . DDX5 NM_004396 exon5 c.A505G p.I169V TTACAATAGGCCC . 222.0 85.0 205.0 0.0 . 101 . . . none . . PASS Atlas-SNP PRKAR1A 5573 hgsc.bcm.edu hg19 17 66511650 66511650 + Missense_Mutation SNP A A G novel TCGA-F9-A7VF-01A-11D-A33Q-10 TCGA-F9-A7VF-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6f35b843-6207-45fa-b18f-ad0f104f9651 491d7fcd-e412-4f53-a19a-d5d51744cd81 . PRKAR1A NM_001276290 exon1 c.A110G p.Q37R TTGTGCAGTTGTG . 68.0 37.0 55.0 0.0 . 48 . . . none . . PASS Atlas-SNP EXOC7 23265 hgsc.bcm.edu hg19 17 74097811 74097811 + Missense_Mutation SNP A A C novel TCGA-F9-A7VF-01A-11D-A33Q-10 TCGA-F9-A7VF-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6f35b843-6207-45fa-b18f-ad0f104f9651 491d7fcd-e412-4f53-a19a-d5d51744cd81 . EXOC7 NM_001145298 exon3 c.T260G p.V87G CTGATGACATGGT . 90.0 24.0 61.0 0.0 . 47 . . . none . . PASS Atlas-SNP EXOC7 23265 hgsc.bcm.edu hg19 17 74097812 74097812 + Missense_Mutation SNP C C A novel TCGA-F9-A7VF-01A-11D-A33Q-10 TCGA-F9-A7VF-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6f35b843-6207-45fa-b18f-ad0f104f9651 491d7fcd-e412-4f53-a19a-d5d51744cd81 . EXOC7 NM_001145298 exon3 c.G259T p.V87F TGATGACATGGTC . 86.0 22.0 63.0 0.0 . 47 . . . none . . PASS Atlas-SNP HKR1 284459 hgsc.bcm.edu hg19 19 37853726 37853726 + Silent SNP C C T novel TCGA-F9-A7VF-01A-11D-A33Q-10 TCGA-F9-A7VF-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6f35b843-6207-45fa-b18f-ad0f104f9651 491d7fcd-e412-4f53-a19a-d5d51744cd81 . HKR1 NM_181786 exon6 c.C1029T p.N343N GTCGAACCTCTTT . 72.0 32.0 81.0 0.0 . 74 . . . none . . PASS Atlas-SNP IGFL3 388555 hgsc.bcm.edu hg19 19 46623600 46623600 + Missense_Mutation SNP A A G novel TCGA-F9-A7VF-01A-11D-A33Q-10 TCGA-F9-A7VF-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6f35b843-6207-45fa-b18f-ad0f104f9651 491d7fcd-e412-4f53-a19a-d5d51744cd81 . IGFL3 NM_207393 exon4 c.T365C p.V122A TACAGGACGTGCC . 71.0 32.0 93.0 0.0 . 17 . . . none . . PASS Atlas-SNP IGFL3 388555 hgsc.bcm.edu hg19 19 46623601 46623601 + Missense_Mutation SNP C C A novel TCGA-F9-A7VF-01A-11D-A33Q-10 TCGA-F9-A7VF-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6f35b843-6207-45fa-b18f-ad0f104f9651 491d7fcd-e412-4f53-a19a-d5d51744cd81 . IGFL3 NM_207393 exon4 c.G364T p.V122F ACAGGACGTGCCT . 71.0 32.0 93.0 0.0 . 17 . . . none . . PASS Atlas-SNP MAVS 57506 hgsc.bcm.edu hg19 20 3842062 3842062 + Missense_Mutation SNP C C A novel TCGA-F9-A7VF-01A-11D-A33Q-10 TCGA-F9-A7VF-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6f35b843-6207-45fa-b18f-ad0f104f9651 491d7fcd-e412-4f53-a19a-d5d51744cd81 . MAVS NM_020746 exon4 c.C376A p.H126N GCGGCCCACAGCA . 257.0 147.0 223.0 0.0 . 34 . . . none . . PASS Atlas-SNP SLC13A3 64849 hgsc.bcm.edu hg19 20 45216777 45216777 + Missense_Mutation SNP G G T novel TCGA-F9-A7VF-01A-11D-A33Q-10 TCGA-F9-A7VF-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6f35b843-6207-45fa-b18f-ad0f104f9651 491d7fcd-e412-4f53-a19a-d5d51744cd81 . SLC13A3 NM_022829 exon8 c.C1042A p.L348I AGAAAAGGATGAA . 130.0 28.0 74.0 0.0 . 88 . . . none . . PASS Atlas-SNP BCAS1 8537 hgsc.bcm.edu hg19 20 52612540 52612540 + Missense_Mutation SNP T T G novel TCGA-F9-A7VF-01A-11D-A33Q-10 TCGA-F9-A7VF-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6f35b843-6207-45fa-b18f-ad0f104f9651 491d7fcd-e412-4f53-a19a-d5d51744cd81 . BCAS1 NM_003657 exon5 c.A773C p.D258A GAGCAATCCGCAG . 85.0 14.0 60.0 0.0 . 77 . . . none . . PASS Atlas-SNP HSPA13 6782 hgsc.bcm.edu hg19 21 15746238 15746238 + Silent SNP G G T novel TCGA-F9-A7VF-01A-11D-A33Q-10 TCGA-F9-A7VF-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6f35b843-6207-45fa-b18f-ad0f104f9651 491d7fcd-e412-4f53-a19a-d5d51744cd81 . HSPA13 NM_006948 exon5 c.C1116A p.T372T ATTAAGGGTATCA . 113.0 42.0 107.0 0.0 . 44 . . . none . . PASS Atlas-SNP FIGF 2277 hgsc.bcm.edu hg19 X 15364334 15364334 + Missense_Mutation SNP T T G novel TCGA-F9-A7VF-01A-11D-A33Q-10 TCGA-F9-A7VF-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6f35b843-6207-45fa-b18f-ad0f104f9651 491d7fcd-e412-4f53-a19a-d5d51744cd81 . FIGF NM_004469 exon7 c.A986C p.K329T GCTGTTTTGCCAC . 79.0 55.0 176.0 0.0 . 39 . . . none . . PASS Atlas-SNP ND2 0 hgsc.bcm.edu hg19 MT 5226 5226 + Missense_Mutation SNP G G A novel TCGA-F9-A7VF-01A-11D-A33Q-10 TCGA-F9-A7VF-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6f35b843-6207-45fa-b18f-ad0f104f9651 491d7fcd-e412-4f53-a19a-d5d51744cd81 . . ENST00000361453 exon1 c.G757A p.G253S CTAGGAGGCCTGC . 199.0 191.0 19.0 0.0 . . . . . none . . PASS Atlas-SNP ND4 0 hgsc.bcm.edu hg19 MT 11150 11150 + Missense_Mutation SNP G G A novel TCGA-F9-A7VF-01A-11D-A33Q-10 TCGA-F9-A7VF-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6f35b843-6207-45fa-b18f-ad0f104f9651 491d7fcd-e412-4f53-a19a-d5d51744cd81 . . ENST00000361381 exon1 c.G391A p.A131T ACCTTGGCTATCA . 250.0 233.0 14.0 0.0 . . . . . none . . PASS Atlas-SNP MID1 4281 hgsc.bcm.edu hg19 X 10535072 10535072 + Frame_Shift_Del DEL C C - novel TCGA-F9-A7VF-01A-11D-A33Q-10 TCGA-F9-A7VF-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6f35b843-6207-45fa-b18f-ad0f104f9651 491d7fcd-e412-4f53-a19a-d5d51744cd81 . MID1 NM_033289 exon2 c.517delC p.L173X . . 68.0 45.0 150.0 0.0 . 72 . 0.661765 0 none . . PASS Atlas-Indel,Pindel ZZEF1 23140 hgsc.bcm.edu hg19 17 3947660 3947660 + Frame_Shift_Del DEL T T - novel TCGA-F9-A7VF-01A-11D-A33Q-10 TCGA-F9-A7VF-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6f35b843-6207-45fa-b18f-ad0f104f9651 491d7fcd-e412-4f53-a19a-d5d51744cd81 . ZZEF1 NM_015113 exon38 c.6025delG p.A2009fs . . 96.0 55.0 66.0 0.0 . 195 . 0.572917 0 none . . PASS Atlas-Indel,Pindel LAMP2 3920 hgsc.bcm.edu hg19 X 119565189 119565190 + Frame_Shift_Ins INS - - AT novel TCGA-F9-A7VF-01A-11D-A33Q-10 TCGA-F9-A7VF-10A-01D-A33Q-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6f35b843-6207-45fa-b18f-ad0f104f9651 491d7fcd-e412-4f53-a19a-d5d51744cd81 . LAMP2 NM_002294 exon9 c.1222_1223insAT p.E408fs . . 182.0 138.0 340.0 0.0 . 101 . 0.758242 0 none . . PASS Atlas-Indel,Pindel PCDH18 54510 hgsc.bcm.edu hg19 4 138452939 138452940 + Frame_Shift_Ins INS - - CT novel TCGA-F9-A7VF-01A-11D-A33Q-10 TCGA-F9-A7VF-10A-01D-A33Q-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6f35b843-6207-45fa-b18f-ad0f104f9651 491d7fcd-e412-4f53-a19a-d5d51744cd81 . PCDH18 NM_019035 exon1 c.304_305insAG p.L102fs . . 87.0 29.0 136.0 0.0 . 229 . 0.333333 0 none . . PASS Atlas-INDEL ABCC9 10060 hgsc.bcm.edu hg19 12 21962796 21962797 + Frame_Shift_Del DEL AG AG - novel TCGA-F9-A7VF-01A-11D-A33Q-10 TCGA-F9-A7VF-10A-01D-A33Q-10 AG AG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6f35b843-6207-45fa-b18f-ad0f104f9651 491d7fcd-e412-4f53-a19a-d5d51744cd81 . ABCC9 NM_020297 exon35 c.4305_4306del p.1435_1436del . . 32.0 13.0 35.0 0.0 . 411 . 0.40625 0 none . . PASS Atlas-INDEL STAT5B 6777 hgsc.bcm.edu hg19 17 40369252 40369259 + Frame_Shift_Del DEL TCACCGAC TCACCGAC - novel TCGA-F9-A7VF-01A-11D-A33Q-10 TCGA-F9-A7VF-10A-01D-A33Q-10 TCACCGAC TCACCGAC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6f35b843-6207-45fa-b18f-ad0f104f9651 491d7fcd-e412-4f53-a19a-d5d51744cd81 . STAT5B NM_012448 exon11 c.1300_1307del p.434_436del . . 172.0 73.0 132.0 0.0 . 89 . 0.424419 0 none . . PASS Atlas-Indel,Pindel DVL3 1857 hgsc.bcm.edu hg19 3 183888399 183888400 + Frame_Shift_Ins INS - - C novel TCGA-F9-A7VF-01A-11D-A33Q-10 TCGA-F9-A7VF-10A-01D-A33Q-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6f35b843-6207-45fa-b18f-ad0f104f9651 491d7fcd-e412-4f53-a19a-d5d51744cd81 . DVL3 NM_004423 exon15 c.2007_2008insC p.M669fs . . 55.0 11.0 73.0 0.0 . 68 . 0.2 0 none . . PASS Atlas-INDEL STAB1 23166 hgsc.bcm.edu hg19 3 52555381 52555381 + Frame_Shift_Del DEL C C - novel TCGA-F9-A7VF-01A-11D-A33Q-10 TCGA-F9-A7VF-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6f35b843-6207-45fa-b18f-ad0f104f9651 491d7fcd-e412-4f53-a19a-d5d51744cd81 . STAB1 NM_015136 exon56 c.5912delG p.C1971fs . . 55.0 30.0 41.0 0.0 . 178 . 0.545455 0 none . . PASS Atlas-Indel,Pindel