Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq TVarRat NVarRat dbSNP_Strength dbSNP_AF dbSNP_PopFreq Confidence Algorithm RNF115 27246 hgsc.bcm.edu hg19 1 145688091 145688091 + Missense_Mutation SNP T T A novel TCGA-EV-5901-01A-11D-1589-08 TCGA-EV-5901-10A-01D-1589-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 846543e9-145b-4332-9043-5817b55e2208 8623db0f-675b-4d34-ba2b-5c12aa3e9b7b . RNF115 NM_014455 exon9 c.T786A p.H262Q TCAGCATGACACA . 139.0 48.0 171.0 0.0 . 27 . . . none . . PASS Atlas-SNP ARHGAP30 257106 hgsc.bcm.edu hg19 1 161021130 161021130 + Missense_Mutation SNP C C A novel TCGA-EV-5901-01A-11D-1589-08 TCGA-EV-5901-10A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 846543e9-145b-4332-9043-5817b55e2208 8623db0f-675b-4d34-ba2b-5c12aa3e9b7b . ARHGAP30 NM_001025598 exon10 c.G1394T p.G465V CCAGGGCCAGGGC . 57.0 20.0 51.0 0.0 . 105 . . . none . . PASS Atlas-SNP VPS54 51542 hgsc.bcm.edu hg19 2 64199372 64199372 + Nonsense_Mutation SNP T T A novel TCGA-EV-5901-01A-11D-1589-08 TCGA-EV-5901-10A-01D-1589-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 846543e9-145b-4332-9043-5817b55e2208 8623db0f-675b-4d34-ba2b-5c12aa3e9b7b . VPS54 NM_016516 exon4 c.A385T p.K129X GAATCTTCTCTCT . 63.0 22.0 52.0 0.0 . 57 . . . none . . PASS Atlas-SNP ARID5A 10865 hgsc.bcm.edu hg19 2 97216937 97216937 + Silent SNP G G A novel TCGA-EV-5901-01A-11D-1589-08 TCGA-EV-5901-10A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 846543e9-145b-4332-9043-5817b55e2208 8623db0f-675b-4d34-ba2b-5c12aa3e9b7b . ARID5A NM_212481 exon7 c.G672A p.G224G CTCTGGGTCTTCT . 108.0 27.0 131.0 0.0 . 31 . . . none . . PASS Atlas-SNP CNNM4 26504 hgsc.bcm.edu hg19 2 97427340 97427340 + Missense_Mutation SNP C C A novel TCGA-EV-5901-01A-11D-1589-08 TCGA-EV-5901-10A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 846543e9-145b-4332-9043-5817b55e2208 8623db0f-675b-4d34-ba2b-5c12aa3e9b7b . CNNM4 NM_020184 exon1 c.C604A p.L202I TCTGGCCTCAACC . 125.0 47.0 157.0 0.0 . 48 . . . none . . PASS Atlas-SNP PRPF40A 55660 hgsc.bcm.edu hg19 2 153532998 153532998 + Missense_Mutation SNP T T C rs372660010 TCGA-EV-5901-01A-11D-1589-08 TCGA-EV-5901-10A-01D-1589-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 846543e9-145b-4332-9043-5817b55e2208 8623db0f-675b-4d34-ba2b-5c12aa3e9b7b PRPF40A_ENST00000410080,NS,carcinoma,0,3 PRPF40A NM_017892 exon10 c.A952G p.T318A CAGGGGTACTAGT . 24.0 2.0 23.0 0.0 . 149 . . . weak . . PASS Atlas-SNP PSMD6 9861 hgsc.bcm.edu hg19 3 64004274 64004274 + Splice_Site SNP C C A novel TCGA-EV-5901-01A-11D-1589-08 TCGA-EV-5901-10A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 846543e9-145b-4332-9043-5817b55e2208 8623db0f-675b-4d34-ba2b-5c12aa3e9b7b . PSMD6 NM_001271779 exon7 c.985+1G>T . TCCTTACCTAATG . 34.0 12.0 44.0 0.0 . 30 . . . none . . PASS Atlas-SNP EPHA6 285220 hgsc.bcm.edu hg19 3 97202865 97202865 + Missense_Mutation SNP A A C novel TCGA-EV-5901-01A-11D-1589-08 TCGA-EV-5901-10A-01D-1589-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 846543e9-145b-4332-9043-5817b55e2208 8623db0f-675b-4d34-ba2b-5c12aa3e9b7b . EPHA6 NM_001080448 exon10 c.A2162C p.D721A AGATTGATCCCTC . 46.0 26.0 42.0 0.0 . 439 . . . none . . PASS Atlas-SNP PHC3 80012 hgsc.bcm.edu hg19 3 169847187 169847187 + Missense_Mutation SNP G G A novel TCGA-EV-5901-01A-11D-1589-08 TCGA-EV-5901-10A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 846543e9-145b-4332-9043-5817b55e2208 8623db0f-675b-4d34-ba2b-5c12aa3e9b7b . PHC3 NM_024947 exon8 c.C1073T p.P358L GGGGGTGGGTCTT . 156.0 45.0 127.0 0.0 . 113 . . . none . . PASS Atlas-SNP PDGFRA 5156 hgsc.bcm.edu hg19 4 55139834 55139834 + Missense_Mutation SNP G G A novel TCGA-EV-5901-01A-11D-1589-08 TCGA-EV-5901-10A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 846543e9-145b-4332-9043-5817b55e2208 8623db0f-675b-4d34-ba2b-5c12aa3e9b7b PDGFRA,NS,carcinoma,0,1 PDGFRA NM_006206 exon10 c.G1495A p.V499M ATCGCCGTGCGAT . 79.0 25.0 126.0 0.0 . 1583 . . . none . . PASS Atlas-SNP LPCAT1 79888 hgsc.bcm.edu hg19 5 1488543 1488543 + Silent SNP A A T novel TCGA-EV-5901-01A-11D-1589-08 TCGA-EV-5901-10A-01D-1589-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 846543e9-145b-4332-9043-5817b55e2208 8623db0f-675b-4d34-ba2b-5c12aa3e9b7b . LPCAT1 NM_024830 exon5 c.T630A p.T210T TGTACAAGTTCCT . 107.0 47.0 152.0 0.0 . 70 . . . none . . PASS Atlas-SNP NSUN2 54888 hgsc.bcm.edu hg19 5 6620280 6620280 + Missense_Mutation SNP C C T novel TCGA-EV-5901-01A-11D-1589-08 TCGA-EV-5901-10A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 846543e9-145b-4332-9043-5817b55e2208 8623db0f-675b-4d34-ba2b-5c12aa3e9b7b . NSUN2 NM_017755 exon7 c.G754A p.D252N CCACATCTATCTG . 122.0 40.0 125.0 0.0 . 82 . . . none . . PASS Atlas-SNP VCAN 1462 hgsc.bcm.edu hg19 5 82836813 82836813 + Missense_Mutation SNP A A G novel TCGA-EV-5901-01A-11D-1589-08 TCGA-EV-5901-10A-01D-1589-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 846543e9-145b-4332-9043-5817b55e2208 8623db0f-675b-4d34-ba2b-5c12aa3e9b7b . VCAN NM_004385 exon8 c.A7991G p.D2664G AACTAGATCACAT . 153.0 45.0 157.0 0.0 . 498 . . . none . . PASS Atlas-SNP SLC22A5 6584 hgsc.bcm.edu hg19 5 131729504 131729504 + Splice_Site SNP G G A novel TCGA-EV-5901-01A-11D-1589-08 TCGA-EV-5901-10A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 846543e9-145b-4332-9043-5817b55e2208 8623db0f-675b-4d34-ba2b-5c12aa3e9b7b . SLC22A5 NM_003060 exon9 c.1586+1G>A . CAAAGGGTAAGAA . 154.0 61.0 211.0 0.0 . 34 . . . none . . PASS Atlas-SNP DPYSL3 1809 hgsc.bcm.edu hg19 5 146780335 146780335 + Missense_Mutation SNP C C A novel TCGA-EV-5901-01A-11D-1589-08 TCGA-EV-5901-10A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 846543e9-145b-4332-9043-5817b55e2208 8623db0f-675b-4d34-ba2b-5c12aa3e9b7b . DPYSL3 NM_001197294 exon10 c.G1372T p.G458W CCTTCCCAATTGC . 76.0 4.0 81.0 0.0 . 58 . . . none . . PASS Atlas-SNP PPP1R10 5514 hgsc.bcm.edu hg19 6 30577691 30577691 + Missense_Mutation SNP G G T novel TCGA-EV-5901-01A-11D-1589-08 TCGA-EV-5901-10A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 846543e9-145b-4332-9043-5817b55e2208 8623db0f-675b-4d34-ba2b-5c12aa3e9b7b . PPP1R10 NM_002714 exon3 c.C31A p.L11I TGAGAAGTTCTTT . 97.0 33.0 106.0 0.0 . 60 . . . none . . PASS Atlas-SNP URGCP 55665 hgsc.bcm.edu hg19 7 43918184 43918184 + Missense_Mutation SNP A A C novel TCGA-EV-5901-01A-11D-1589-08 TCGA-EV-5901-10A-01D-1589-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 846543e9-145b-4332-9043-5817b55e2208 8623db0f-675b-4d34-ba2b-5c12aa3e9b7b . URGCP NM_001077663 exon6 c.T878G p.F293C TGCCAGAAGCAGT . 75.0 21.0 70.0 0.0 . 170 . . . none . . PASS Atlas-SNP BAZ1B 9031 hgsc.bcm.edu hg19 7 72907199 72907199 + Silent SNP T T C novel TCGA-EV-5901-01A-11D-1589-08 TCGA-EV-5901-10A-01D-1589-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 846543e9-145b-4332-9043-5817b55e2208 8623db0f-675b-4d34-ba2b-5c12aa3e9b7b . BAZ1B NM_032408 exon5 c.A624G p.G208G CCTTTCTCCTTTT . 112.0 26.0 51.0 0.0 . 147 . . . none . . PASS Atlas-SNP DNAJC2 27000 hgsc.bcm.edu hg19 7 102963052 102963052 + Missense_Mutation SNP A A T novel TCGA-EV-5901-01A-11D-1589-08 TCGA-EV-5901-10A-01D-1589-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 846543e9-145b-4332-9043-5817b55e2208 8623db0f-675b-4d34-ba2b-5c12aa3e9b7b . DNAJC2 NM_001129887 exon9 c.T839A p.I280K TTTTTTATCCTTG . 60.0 33.0 53.0 0.0 . 46 . . . none . . PASS Atlas-SNP DNAJC2 27000 hgsc.bcm.edu hg19 7 102963053 102963053 + Missense_Mutation SNP T T A novel TCGA-EV-5901-01A-11D-1589-08 TCGA-EV-5901-10A-01D-1589-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 846543e9-145b-4332-9043-5817b55e2208 8623db0f-675b-4d34-ba2b-5c12aa3e9b7b . DNAJC2 NM_001129887 exon9 c.A838T p.I280L TTTTTATCCTTGG . 60.0 33.0 53.0 0.0 . 46 . . . none . . PASS Atlas-SNP PLEC 5339 hgsc.bcm.edu hg19 8 144997708 144997708 + Missense_Mutation SNP T T A novel TCGA-EV-5901-01A-11D-1589-08 TCGA-EV-5901-10A-01D-1589-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 846543e9-145b-4332-9043-5817b55e2208 8623db0f-675b-4d34-ba2b-5c12aa3e9b7b . PLEC NM_201380 exon31 c.A6800T p.Q2267L TGTGCCTGAGCCC . 24.0 5.0 27.0 0.0 . 1144 . . . none . . PASS Atlas-SNP ABCA2 20 hgsc.bcm.edu hg19 9 139908396 139908396 + Silent SNP G G C novel TCGA-EV-5901-01A-11D-1589-08 TCGA-EV-5901-10A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 846543e9-145b-4332-9043-5817b55e2208 8623db0f-675b-4d34-ba2b-5c12aa3e9b7b . ABCA2 NM_212533 exon28 c.C4425G p.V1475V GCGTTTGACCAGC . 33.0 11.0 37.0 0.0 . 113 . . . none . . PASS Atlas-SNP ANK3 288 hgsc.bcm.edu hg19 10 61836183 61836183 + Missense_Mutation SNP T T C novel TCGA-EV-5901-01A-11D-1589-08 TCGA-EV-5901-10A-01D-1589-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 846543e9-145b-4332-9043-5817b55e2208 8623db0f-675b-4d34-ba2b-5c12aa3e9b7b . ANK3 NM_020987 exon37 c.A4456G p.R1486G GGGATCTTGTTGC . 58.0 27.0 55.0 0.0 . 703 . . . none . . PASS Atlas-SNP MSS51 118490 hgsc.bcm.edu hg19 10 75185676 75185676 + Missense_Mutation SNP C C T rs143815503 bycluster;byfrequency;alternate_allele TCGA-EV-5901-01A-11D-1589-08 TCGA-EV-5901-10A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 846543e9-145b-4332-9043-5817b55e2208 8623db0f-675b-4d34-ba2b-5c12aa3e9b7b . . NM_001024593 exon5 c.G962A p.G321D ATTGTGCCAGGTT . 56.0 4.0 55.0 0.0 . . . . . alt C|1.000;A|0.000 . PASS Atlas-SNP GUCY2C 2984 hgsc.bcm.edu hg19 12 14796597 14796597 + Missense_Mutation SNP C C T novel TCGA-EV-5901-01A-11D-1589-08 TCGA-EV-5901-10A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 846543e9-145b-4332-9043-5817b55e2208 8623db0f-675b-4d34-ba2b-5c12aa3e9b7b . GUCY2C NM_004963 exon17 c.G1841A p.R614H TTCAGACGACCAT . 217.0 51.0 247.0 0.0 . 126 . . . none . . PASS Atlas-SNP PRKAG1 5571 hgsc.bcm.edu hg19 12 49396719 49396719 + Missense_Mutation SNP T T C novel TCGA-EV-5901-01A-11D-1589-08 TCGA-EV-5901-10A-01D-1589-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 846543e9-145b-4332-9043-5817b55e2208 8623db0f-675b-4d34-ba2b-5c12aa3e9b7b . PRKAG1 NM_001206709 exon12 c.A986G p.Q329R AGGGCCTGCAGGA . 92.0 4.0 98.0 0.0 . 31 . . . none . . PASS Atlas-SNP KDM2B 84678 hgsc.bcm.edu hg19 12 121947832 121947832 + Silent SNP C C T novel TCGA-EV-5901-01A-11D-1589-08 TCGA-EV-5901-10A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 846543e9-145b-4332-9043-5817b55e2208 8623db0f-675b-4d34-ba2b-5c12aa3e9b7b . KDM2B NM_032590 exon11 c.G1185A p.R395R GGGCTTCCTCGGG . 70.0 24.0 99.0 0.0 . 218 . . . none . . PASS Atlas-SNP SACS 26278 hgsc.bcm.edu hg19 13 23909472 23909472 + Missense_Mutation SNP A A T novel TCGA-EV-5901-01A-11D-1589-08 TCGA-EV-5901-10A-01D-1589-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 846543e9-145b-4332-9043-5817b55e2208 8623db0f-675b-4d34-ba2b-5c12aa3e9b7b . SACS NM_014363 exon10 c.T8543A p.F2848Y CGTGGGAAAAGAG . 155.0 57.0 139.0 0.0 . 871 . . . none . . PASS Atlas-SNP B3GALTL 145173 hgsc.bcm.edu hg19 13 31821210 31821210 + Silent SNP A A G novel TCGA-EV-5901-01A-11D-1589-08 TCGA-EV-5901-10A-01D-1589-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 846543e9-145b-4332-9043-5817b55e2208 8623db0f-675b-4d34-ba2b-5c12aa3e9b7b . B3GALTL NM_194318 exon5 c.A321G p.A107A AGGTGCATGGACC . 105.0 30.0 73.0 0.0 . 48 . . . none . . PASS Atlas-SNP RNASE11 122651 hgsc.bcm.edu hg19 14 21052161 21052161 + Missense_Mutation SNP C C A novel TCGA-EV-5901-01A-11D-1589-08 TCGA-EV-5901-10A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 846543e9-145b-4332-9043-5817b55e2208 8623db0f-675b-4d34-ba2b-5c12aa3e9b7b . RNASE11 NM_145250 exon3 c.G473T p.C158F AACTGGCACACTG . 64.0 4.0 65.0 0.0 . 44 . . . none . . PASS Atlas-SNP ZFP106 64397 hgsc.bcm.edu hg19 15 42717056 42717056 + Missense_Mutation SNP A A C novel TCGA-EV-5901-01A-11D-1589-08 TCGA-EV-5901-10A-01D-1589-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 846543e9-145b-4332-9043-5817b55e2208 8623db0f-675b-4d34-ba2b-5c12aa3e9b7b . ZFP106 NM_022473 exon13 c.T5097G p.H1699Q TTTGCTATGGCCC . 31.0 14.0 55.0 0.0 . 117 . . . none . . PASS Atlas-SNP KIAA1199 57214 hgsc.bcm.edu hg19 15 81230320 81230320 + Missense_Mutation SNP G G A novel TCGA-EV-5901-01A-11D-1589-08 TCGA-EV-5901-10A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 846543e9-145b-4332-9043-5817b55e2208 8623db0f-675b-4d34-ba2b-5c12aa3e9b7b . KIAA1199 NM_018689 exon24 c.G3407A p.G1136E ACTCAGGGTGAGC . 28.0 14.0 23.0 0.0 . 118 . . . none . . PASS Atlas-SNP BCMO1 53630 hgsc.bcm.edu hg19 16 81314514 81314514 + Missense_Mutation SNP C C G novel TCGA-EV-5901-01A-11D-1589-08 TCGA-EV-5901-10A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 846543e9-145b-4332-9043-5817b55e2208 8623db0f-675b-4d34-ba2b-5c12aa3e9b7b BCMO1,head_neck,malignant_melanoma,0,1 BCMO1 NM_017429 exon8 c.C1154G p.A385G CCACGGCCCTGAA . 50.0 2.0 51.0 0.0 . 53 . . . none . . PASS Atlas-SNP RAB3A 5864 hgsc.bcm.edu hg19 19 18313494 18313494 + Missense_Mutation SNP G G C novel TCGA-EV-5901-01A-11D-1589-08 TCGA-EV-5901-10A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 846543e9-145b-4332-9043-5817b55e2208 8623db0f-675b-4d34-ba2b-5c12aa3e9b7b . RAB3A NM_002866 exon2 c.C57G p.F19L GTAGTCGAAGTTC . 195.0 56.0 246.0 0.0 . 23 . . . none . . PASS Atlas-SNP CSNK2A1 1457 hgsc.bcm.edu hg19 20 468205 468205 + Missense_Mutation SNP C C T novel TCGA-EV-5901-01A-11D-1589-08 TCGA-EV-5901-10A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 846543e9-145b-4332-9043-5817b55e2208 8623db0f-675b-4d34-ba2b-5c12aa3e9b7b . CSNK2A1 NM_001895 exon11 c.G839A p.R280Q TCCCATCGCTTTC . 70.0 21.0 69.0 0.0 . 36 . . . none . . PASS Atlas-SNP HMOX1 3162 hgsc.bcm.edu hg19 22 35779129 35779129 + Missense_Mutation SNP G G T novel TCGA-EV-5901-01A-11D-1589-08 TCGA-EV-5901-10A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 846543e9-145b-4332-9043-5817b55e2208 8623db0f-675b-4d34-ba2b-5c12aa3e9b7b . HMOX1 NM_002133 exon2 c.G54T p.K18N CCTGAAGGAGGCC . 94.0 29.0 156.0 0.0 . 32 . . . none . . PASS Atlas-SNP SUN2 25777 hgsc.bcm.edu hg19 22 39146253 39146253 + Missense_Mutation SNP A A G novel TCGA-EV-5901-01A-11D-1589-08 TCGA-EV-5901-10A-01D-1589-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 846543e9-145b-4332-9043-5817b55e2208 8623db0f-675b-4d34-ba2b-5c12aa3e9b7b . SUN2 NM_001199579 exon5 c.T560C p.L187P ATCCAGAGTAAGG . 66.0 22.0 82.0 0.0 . 59 . . . none . . PASS Atlas-SNP DDX3X 1654 hgsc.bcm.edu hg19 X 41202004 41202004 + Missense_Mutation SNP G G A novel TCGA-EV-5901-01A-11D-1589-08 TCGA-EV-5901-10A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 846543e9-145b-4332-9043-5817b55e2208 8623db0f-675b-4d34-ba2b-5c12aa3e9b7b . DDX3X NM_001193416 exon6 c.G458A p.G153E TTTCTGGAGGCAA . 145.0 54.0 146.0 0.0 . 138 . . . none . . PASS Atlas-SNP RPL36A-HNRNPH2 0 hgsc.bcm.edu hg19 X 100646010 100646010 + Silent SNP C C T novel TCGA-EV-5901-01A-11D-1589-08 TCGA-EV-5901-10A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 846543e9-145b-4332-9043-5817b55e2208 8623db0f-675b-4d34-ba2b-5c12aa3e9b7b . . NM_001199973 exon1 c.C87T p.R29R TTTCCGCGCCGAT . 165.0 44.0 164.0 0.0 . . . . . none . . PASS Atlas-SNP CCDC129 223075 hgsc.bcm.edu hg19 7 31683522 31683527 + In_Frame_Del DEL GACTTT GACTTT - novel TCGA-EV-5901-01A-11D-1589-08 TCGA-EV-5901-10A-01D-1589-08 GACTTT GACTTT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 846543e9-145b-4332-9043-5817b55e2208 8623db0f-675b-4d34-ba2b-5c12aa3e9b7b . CCDC129 NM_001257968 exon11 c.2615_2620del p.872_874del . . 121.0 26.0 64.0 0.0 . 127 . 0.214876 0 none . . PASS Atlas-INDEL CEP63 80254 hgsc.bcm.edu hg19 3 134250746 134250746 + Frame_Shift_Del DEL G G - novel TCGA-EV-5901-01A-11D-1589-08 TCGA-EV-5901-10A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 846543e9-145b-4332-9043-5817b55e2208 8623db0f-675b-4d34-ba2b-5c12aa3e9b7b . CEP63 NM_001042383 exon4 c.281delT p.M94fs . . 80.0 41.0 79.0 0.0 . 56 . 0.5125 0 none . . PASS Atlas-INDEL CD86 942 hgsc.bcm.edu hg19 3 121825262 121825263 + Frame_Shift_Del DEL AT AT - novel TCGA-EV-5901-01A-11D-1589-08 TCGA-EV-5901-10A-01D-1589-08 AT AT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 846543e9-145b-4332-9043-5817b55e2208 8623db0f-675b-4d34-ba2b-5c12aa3e9b7b . CD86 NM_175862 exon4 c.617_618del p.206_206del . . 362.0 177.0 263.0 0.0 . 43 . 0.48895 0 none . . PASS Atlas-INDEL