Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq TVarRat NVarRat dbSNP_Strength dbSNP_AF dbSNP_PopFreq Confidence Algorithm HIVEP3 59269 hgsc.bcm.edu hg19 1 42048765 42048765 + Silent SNP G G T novel TCGA-DZ-6134-01A-11D-1961-08 TCGA-DZ-6134-10A-01D-1962-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 230ddafa-8d9f-4ddc-b864-ba8eb42a31ab 8e8a3cd2-c9ae-4be6-8682-214badaa00a5 HIVEP3,NS,carcinoma,0,1 HIVEP3 NM_024503 exon4 c.C1704A p.T568T GGAGTCGGTGATA . 94.0 5.0 109.0 1.0 . 235 . . . none . . PASS Atlas-SNP POGZ 23126 hgsc.bcm.edu hg19 1 151378756 151378756 + Missense_Mutation SNP G G A novel TCGA-DZ-6134-01A-11D-1961-08 TCGA-DZ-6134-10A-01D-1962-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 230ddafa-8d9f-4ddc-b864-ba8eb42a31ab 8e8a3cd2-c9ae-4be6-8682-214badaa00a5 . POGZ NM_015100 exon19 c.C2755T p.P919S GGGTTGGTGGTGG . 140.0 32.0 114.0 0.0 . 211 . . . none . . PASS Atlas-SNP ACTA1 58 hgsc.bcm.edu hg19 1 229568083 229568083 + Missense_Mutation SNP C C T novel TCGA-DZ-6134-01A-11D-1961-08 TCGA-DZ-6134-10A-01D-1962-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 230ddafa-8d9f-4ddc-b864-ba8eb42a31ab 8e8a3cd2-c9ae-4be6-8682-214badaa00a5 . ACTA1 NM_001100 exon4 c.G550A p.G184S CGCGGCCCGCCAG . 76.0 13.0 63.0 0.0 . 65 . . . none . . PASS Atlas-SNP PDIA6 10130 hgsc.bcm.edu hg19 2 10927529 10927529 + Silent SNP A A T novel TCGA-DZ-6134-01A-11D-1961-08 TCGA-DZ-6134-10A-01D-1962-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 230ddafa-8d9f-4ddc-b864-ba8eb42a31ab 8e8a3cd2-c9ae-4be6-8682-214badaa00a5 . PDIA6 NM_005742 exon11 c.T1035A p.L345L GGTCTCAAGTTCA . 80.0 10.0 79.0 0.0 . 31 . . . none . . PASS Atlas-SNP WNT10A 80326 hgsc.bcm.edu hg19 2 219754883 219754883 + Missense_Mutation SNP G G A novel TCGA-DZ-6134-01A-11D-1961-08 TCGA-DZ-6134-10A-01D-1962-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 230ddafa-8d9f-4ddc-b864-ba8eb42a31ab 8e8a3cd2-c9ae-4be6-8682-214badaa00a5 . WNT10A NM_025216 exon3 c.G554A p.G185D AGCGTGGTAAGGG . 67.0 13.0 67.0 0.0 . 35 . . . none . . PASS Atlas-SNP PIK3CA 5290 hgsc.bcm.edu hg19 3 178936082 178936082 + Missense_Mutation SNP G G A rs121913273 TCGA-DZ-6134-01A-11D-1961-08 TCGA-DZ-6134-10A-01D-1962-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 230ddafa-8d9f-4ddc-b864-ba8eb42a31ab 8e8a3cd2-c9ae-4be6-8682-214badaa00a5 PIK3CA_ENST00000263967,NS,carcinoma,0,2 PIK3CA NM_006218 exon10 c.G1624A p.E542K CTCTCTGAAATCA . 87.0 24.0 78.0 0.0 . 8460 . . . weak . . PASS Atlas-SNP NPNT 255743 hgsc.bcm.edu hg19 4 106859521 106859521 + Missense_Mutation SNP G G T novel TCGA-DZ-6134-01A-11D-1961-08 TCGA-DZ-6134-10A-01D-1962-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 230ddafa-8d9f-4ddc-b864-ba8eb42a31ab 8e8a3cd2-c9ae-4be6-8682-214badaa00a5 . NPNT NM_001184691 exon6 c.G539T p.R180L AAATACGGTGCCA . 111.0 5.0 77.0 0.0 . 69 . . . none . . PASS Atlas-SNP CRIP3 401262 hgsc.bcm.edu hg19 6 43275462 43275462 + Silent SNP T T C novel TCGA-DZ-6134-01A-11D-1961-08 TCGA-DZ-6134-10A-01D-1962-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 230ddafa-8d9f-4ddc-b864-ba8eb42a31ab 8e8a3cd2-c9ae-4be6-8682-214badaa00a5 . CRIP3 NM_206922 exon4 c.A216G p.V72V GGAGCCTACACCA . 97.0 18.0 90.0 0.0 . 30 . . . none . . PASS Atlas-SNP BCLAF1 9774 hgsc.bcm.edu hg19 6 136599912 136599912 + Missense_Mutation SNP G G T rs200334350 TCGA-DZ-6134-01A-11D-1961-08 TCGA-DZ-6134-10A-01D-1962-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 230ddafa-8d9f-4ddc-b864-ba8eb42a31ab 8e8a3cd2-c9ae-4be6-8682-214badaa00a5 . BCLAF1 NM_014739 exon4 c.C107A p.S36Y GACCTAGAACTAA . 47.0 6.0 29.0 0.0 . 203 . . . weak . . PASS Atlas-SNP FZD1 8321 hgsc.bcm.edu hg19 7 90894779 90894779 + Missense_Mutation SNP G G A novel TCGA-DZ-6134-01A-11D-1961-08 TCGA-DZ-6134-10A-01D-1962-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 230ddafa-8d9f-4ddc-b864-ba8eb42a31ab 8e8a3cd2-c9ae-4be6-8682-214badaa00a5 . FZD1 NM_003505 exon1 c.G584A p.R195H GCGCGCGCCAGGG . 169.0 33.0 119.0 0.0 . 64 . . . none . . PASS Atlas-SNP ATP5J2-PTCD1 100526740 hgsc.bcm.edu hg19 7 99022814 99022814 + Silent SNP G G A novel TCGA-DZ-6134-01A-11D-1961-08 TCGA-DZ-6134-10A-01D-1962-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 230ddafa-8d9f-4ddc-b864-ba8eb42a31ab 8e8a3cd2-c9ae-4be6-8682-214badaa00a5 . . NM_001198879 exon7 c.C1488T p.A496A GGGAACGGCCCCG . 149.0 50.0 136.0 0.0 . . . . . none . . PASS Atlas-SNP SERPINE1 5054 hgsc.bcm.edu hg19 7 100780346 100780346 + Silent SNP G G C novel TCGA-DZ-6134-01A-11D-1961-08 TCGA-DZ-6134-10A-01D-1962-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 230ddafa-8d9f-4ddc-b864-ba8eb42a31ab 8e8a3cd2-c9ae-4be6-8682-214badaa00a5 . SERPINE1 NM_000602 exon8 c.G1152C p.V384V CTTTGTGGTCCGG . 203.0 27.0 202.0 0.0 . 60 . . . none . . PASS Atlas-SNP HSDL2 84263 hgsc.bcm.edu hg19 9 115181173 115181173 + Missense_Mutation SNP A A G novel TCGA-DZ-6134-01A-11D-1961-08 TCGA-DZ-6134-10A-01D-1962-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 230ddafa-8d9f-4ddc-b864-ba8eb42a31ab 8e8a3cd2-c9ae-4be6-8682-214badaa00a5 . HSDL2 NM_032303 exon6 c.A533G p.Y178C CTATGTATGTGCT . 83.0 6.0 70.0 0.0 . 24 . . . none . . PASS Atlas-SNP ALAD 210 hgsc.bcm.edu hg19 9 116151742 116151742 + Silent SNP G G A novel TCGA-DZ-6134-01A-11D-1961-08 TCGA-DZ-6134-10A-01D-1962-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 230ddafa-8d9f-4ddc-b864-ba8eb42a31ab 8e8a3cd2-c9ae-4be6-8682-214badaa00a5 . ALAD NM_000031 exon10 c.C777T p.D259D CACGATGTCCAGG . 112.0 26.0 168.0 0.0 . 36 . . . none . . PASS Atlas-SNP CAMK1D 57118 hgsc.bcm.edu hg19 10 12595265 12595265 + Missense_Mutation SNP C C T novel TCGA-DZ-6134-01A-11D-1961-08 TCGA-DZ-6134-10A-01D-1962-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 230ddafa-8d9f-4ddc-b864-ba8eb42a31ab 8e8a3cd2-c9ae-4be6-8682-214badaa00a5 . CAMK1D NM_153498 exon2 c.C134T p.T45I AGGCAACTGGCAA . 189.0 35.0 205.0 0.0 . 99 . . . none . . PASS Atlas-SNP SLC43A1 8501 hgsc.bcm.edu hg19 11 57261478 57261478 + Missense_Mutation SNP T T A novel TCGA-DZ-6134-01A-11D-1961-08 TCGA-DZ-6134-10A-01D-1962-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 230ddafa-8d9f-4ddc-b864-ba8eb42a31ab 8e8a3cd2-c9ae-4be6-8682-214badaa00a5 . SLC43A1 NM_001198810 exon8 c.A859T p.N287Y GAAGGTTTTCTGA . 62.0 13.0 74.0 0.0 . 48 . . . none . . PASS Atlas-SNP USP35 57558 hgsc.bcm.edu hg19 11 77921303 77921303 + Missense_Mutation SNP C C T novel TCGA-DZ-6134-01A-11D-1961-08 TCGA-DZ-6134-10A-01D-1962-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 230ddafa-8d9f-4ddc-b864-ba8eb42a31ab 8e8a3cd2-c9ae-4be6-8682-214badaa00a5 . USP35 NM_020798 exon10 c.C2402T p.P801L AAGGGCCGTGCTA . 112.0 8.0 165.0 0.0 . 179 . . . none . . PASS Atlas-SNP PCF11 51585 hgsc.bcm.edu hg19 11 82877713 82877713 + Missense_Mutation SNP A A G novel TCGA-DZ-6134-01A-11D-1961-08 TCGA-DZ-6134-10A-01D-1962-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 230ddafa-8d9f-4ddc-b864-ba8eb42a31ab 8e8a3cd2-c9ae-4be6-8682-214badaa00a5 . PCF11 NM_015885 exon5 c.A1774G p.K592E AGTTCCAAGTCTG . 156.0 29.0 134.0 0.0 . 220 . . . none . . PASS Atlas-SNP ATF7 11016 hgsc.bcm.edu hg19 12 53910964 53910964 + Missense_Mutation SNP G G A novel TCGA-DZ-6134-01A-11D-1961-08 TCGA-DZ-6134-10A-01D-1962-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 230ddafa-8d9f-4ddc-b864-ba8eb42a31ab 8e8a3cd2-c9ae-4be6-8682-214badaa00a5 . ATF7 NM_006856 exon12 c.C1409T p.S470L ACATGCGATTGTA . 184.0 36.0 171.0 0.0 . 51 . . . none . . PASS Atlas-SNP SMARCC2 6601 hgsc.bcm.edu hg19 12 56558339 56558339 + Missense_Mutation SNP T T C novel TCGA-DZ-6134-01A-11D-1961-08 TCGA-DZ-6134-10A-01D-1962-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 230ddafa-8d9f-4ddc-b864-ba8eb42a31ab 8e8a3cd2-c9ae-4be6-8682-214badaa00a5 . SMARCC2 NM_003075 exon27 c.A3316G p.I1106V TACTGATGGAGTC . 120.0 42.0 92.0 0.0 . 212 . . . none . . PASS Atlas-SNP BTBD6 90135 hgsc.bcm.edu hg19 14 105716270 105716270 + Missense_Mutation SNP C C T novel TCGA-DZ-6134-01A-11D-1961-08 TCGA-DZ-6134-10A-01D-1962-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 230ddafa-8d9f-4ddc-b864-ba8eb42a31ab 8e8a3cd2-c9ae-4be6-8682-214badaa00a5 . BTBD6 NM_033271 exon5 c.C719T p.A240V GGGAGGCCCTCAA . 44.0 7.0 54.0 0.0 . 24 . . . none . . PASS Atlas-SNP FAM86A 196483 hgsc.bcm.edu hg19 16 5140457 5140457 + Missense_Mutation SNP T T A novel TCGA-DZ-6134-01A-11D-1961-08 TCGA-DZ-6134-10A-01D-1962-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 230ddafa-8d9f-4ddc-b864-ba8eb42a31ab 8e8a3cd2-c9ae-4be6-8682-214badaa00a5 . FAM86A NM_201400 exon5 c.A452T p.E151V GGGTTCTCGATGG . 159.0 16.0 128.0 0.0 . 32 . . . none . . PASS Atlas-SNP TPPP3 51673 hgsc.bcm.edu hg19 16 67424233 67424233 + Silent SNP C C G novel TCGA-DZ-6134-01A-11D-1961-08 TCGA-DZ-6134-10A-01D-1962-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 230ddafa-8d9f-4ddc-b864-ba8eb42a31ab 8e8a3cd2-c9ae-4be6-8682-214badaa00a5 . TPPP3 NM_016140 exon5 c.G375C p.L125L GTCCGTCAGCCGG . 268.0 11.0 281.0 0.0 . 13 . . . none . . PASS Atlas-SNP MYH2 4620 hgsc.bcm.edu hg19 17 10426831 10426831 + Silent SNP G G A novel TCGA-DZ-6134-01A-11D-1961-08 TCGA-DZ-6134-10A-01D-1962-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 230ddafa-8d9f-4ddc-b864-ba8eb42a31ab 8e8a3cd2-c9ae-4be6-8682-214badaa00a5 . MYH2 NM_017534 exon37 c.C5454T p.I1818I TTTCTGGATCTGC . 230.0 82.0 190.0 0.0 . 390 . . . none . . PASS Atlas-SNP RDM1 201299 hgsc.bcm.edu hg19 17 34257138 34257138 + Missense_Mutation SNP G G A novel TCGA-DZ-6134-01A-11D-1961-08 TCGA-DZ-6134-10A-01D-1962-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 230ddafa-8d9f-4ddc-b864-ba8eb42a31ab 8e8a3cd2-c9ae-4be6-8682-214badaa00a5 . RDM1 NM_001034836 exon2 c.C218T p.A73V CTGTGGGCAGCCC . 361.0 23.0 271.0 0.0 . 46 . . . none . . PASS Atlas-SNP MLX 6945 hgsc.bcm.edu hg19 17 40720856 40720856 + Silent SNP T T C novel TCGA-DZ-6134-01A-11D-1961-08 TCGA-DZ-6134-10A-01D-1962-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 230ddafa-8d9f-4ddc-b864-ba8eb42a31ab 8e8a3cd2-c9ae-4be6-8682-214badaa00a5 . MLX NM_170607 exon4 c.T333C p.D111D CGTAGATGATGAG . 23.0 6.0 21.0 0.0 . 17 . . . none . . PASS Atlas-SNP DHDH 27294 hgsc.bcm.edu hg19 19 49447704 49447704 + Missense_Mutation SNP T T G novel TCGA-DZ-6134-01A-11D-1961-08 TCGA-DZ-6134-10A-01D-1962-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 230ddafa-8d9f-4ddc-b864-ba8eb42a31ab 8e8a3cd2-c9ae-4be6-8682-214badaa00a5 . DHDH NM_014475 exon6 c.T835G p.F279V TGCAATTTTGACA . 110.0 24.0 147.0 0.0 . 35 . . . none . . PASS Atlas-SNP DHDH 27294 hgsc.bcm.edu hg19 19 49447728 49447728 + Missense_Mutation SNP T T A novel TCGA-DZ-6134-01A-11D-1961-08 TCGA-DZ-6134-10A-01D-1962-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 230ddafa-8d9f-4ddc-b864-ba8eb42a31ab 8e8a3cd2-c9ae-4be6-8682-214badaa00a5 . DHDH NM_014475 exon6 c.T859A p.Y287N ATGAGTTATGAGG . 116.0 20.0 153.0 0.0 . 35 . . . none . . PASS Atlas-SNP C20orf141 128653 hgsc.bcm.edu hg19 20 2796280 2796280 + Silent SNP G G T novel TCGA-DZ-6134-01A-11D-1961-08 TCGA-DZ-6134-10A-01D-1962-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 230ddafa-8d9f-4ddc-b864-ba8eb42a31ab 8e8a3cd2-c9ae-4be6-8682-214badaa00a5 . C20orf141 NM_080739 exon2 c.G357T p.L119L ACTCCTGCAAATG . 89.0 14.0 98.0 0.0 . 21 . . . none . . PASS Atlas-SNP NINL 22981 hgsc.bcm.edu hg19 20 25469911 25469911 + Missense_Mutation SNP G G T novel TCGA-DZ-6134-01A-11D-1961-08 TCGA-DZ-6134-10A-01D-1962-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 230ddafa-8d9f-4ddc-b864-ba8eb42a31ab 8e8a3cd2-c9ae-4be6-8682-214badaa00a5 . NINL NM_025176 exon13 c.C1646A p.A549E AGGACTGCTGCGA . 170.0 24.0 205.0 0.0 . 148 . . . none . . PASS Atlas-SNP TP53TG5 27296 hgsc.bcm.edu hg19 20 44005872 44005872 + Missense_Mutation SNP C C G novel TCGA-DZ-6134-01A-11D-1961-08 TCGA-DZ-6134-10A-01D-1962-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 230ddafa-8d9f-4ddc-b864-ba8eb42a31ab 8e8a3cd2-c9ae-4be6-8682-214badaa00a5 . TP53TG5 NM_014477 exon3 c.G234C p.K78N GAGAATCTTTGGA . 185.0 11.0 219.0 0.0 . 36 . . . none . . PASS Atlas-SNP NR2C2AP 126382 hgsc.bcm.edu hg19 19 19313644 19313645 + Frame_Shift_Ins INS - - T novel TCGA-DZ-6134-01A-11D-1961-08 TCGA-DZ-6134-10A-01D-1962-08 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 230ddafa-8d9f-4ddc-b864-ba8eb42a31ab 8e8a3cd2-c9ae-4be6-8682-214badaa00a5 . NR2C2AP NM_176880 exon2 c.85_86insA p.H29fs . . 116.0 20.0 138.0 0.0 . 7 . 0.172414 0 none . . PASS Atlas-INDEL