Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq TVarRat NVarRat dbSNP_Strength dbSNP_AF dbSNP_PopFreq Confidence Algorithm ZNF436 80818 hgsc.bcm.edu hg19 1 23688888 23688888 + Silent SNP C C A novel TCGA-DZ-6133-01A-11D-1961-08 TCGA-DZ-6133-10A-01D-1962-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dac1245d-4f00-4d28-bbc0-cdaf6beba2d0 e6107469-78da-4831-a87a-9fc0dbccbd8e . ZNF436 NM_001077195 exon4 c.G987T p.T329T CTCTCCCGTGTGG . 150.0 9.0 226.0 0.0 . 49 . . . none . . PASS Atlas-SNP PSMB4 5692 hgsc.bcm.edu hg19 1 151372078 151372078 + Silent SNP G G A novel TCGA-DZ-6133-01A-11D-1961-08 TCGA-DZ-6133-10A-01D-1962-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dac1245d-4f00-4d28-bbc0-cdaf6beba2d0 e6107469-78da-4831-a87a-9fc0dbccbd8e . PSMB4 NM_002796 exon1 c.G15A p.L5L GTTTTTGGGGTCG . 135.0 55.0 274.0 1.0 . 18 . . . none . . PASS Atlas-SNP RIT1 6016 hgsc.bcm.edu hg19 1 155870300 155870300 + Missense_Mutation SNP C C A novel TCGA-DZ-6133-01A-11D-1961-08 TCGA-DZ-6133-10A-01D-1962-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dac1245d-4f00-4d28-bbc0-cdaf6beba2d0 e6107469-78da-4831-a87a-9fc0dbccbd8e . RIT1 NM_001256821 exon6 c.G590T p.R197L ATCTCCCGTACAA . 282.0 14.0 381.0 0.0 . 34 . . . none . . PASS Atlas-SNP SPATA17 128153 hgsc.bcm.edu hg19 1 217975148 217975148 + Nonsense_Mutation SNP G G T novel TCGA-DZ-6133-01A-11D-1961-08 TCGA-DZ-6133-10A-01D-1962-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dac1245d-4f00-4d28-bbc0-cdaf6beba2d0 e6107469-78da-4831-a87a-9fc0dbccbd8e SPATA17,NS,malignant_melanoma,0,3 SPATA17 NM_138796 exon9 c.G961T p.E321X TACAAAGAACAAT . 62.0 28.0 48.0 0.0 . 59 . . . none . . PASS Atlas-SNP OBSCN 84033 hgsc.bcm.edu hg19 1 228494234 228494234 + Missense_Mutation SNP G G A novel TCGA-DZ-6133-01A-11D-1961-08 TCGA-DZ-6133-10A-01D-1962-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dac1245d-4f00-4d28-bbc0-cdaf6beba2d0 e6107469-78da-4831-a87a-9fc0dbccbd8e . OBSCN NM_001271223 exon55 c.G14692A p.G4898S CTTCAGGGCTGCA . 61.0 30.0 99.0 0.0 . 2142 . . . none . . PASS Atlas-SNP ACTR1B 10120 hgsc.bcm.edu hg19 2 98277105 98277105 + Missense_Mutation SNP C C A novel TCGA-DZ-6133-01A-11D-1961-08 TCGA-DZ-6133-10A-01D-1962-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dac1245d-4f00-4d28-bbc0-cdaf6beba2d0 e6107469-78da-4831-a87a-9fc0dbccbd8e . ACTR1B NM_005735 exon3 c.G118T p.G40W GCCGCCCGACACT . 124.0 8.0 134.0 0.0 . 34 . . . none . . PASS Atlas-SNP MAP4K4 9448 hgsc.bcm.edu hg19 2 102493544 102493544 + Silent SNP C C A novel TCGA-DZ-6133-01A-11D-1961-08 TCGA-DZ-6133-10A-01D-1962-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dac1245d-4f00-4d28-bbc0-cdaf6beba2d0 e6107469-78da-4831-a87a-9fc0dbccbd8e . MAP4K4 NM_145686 exon25 c.C2988A p.I996I TCTTATCAACCGA . 94.0 54.0 54.0 0.0 . 111 . . . none . . PASS Atlas-SNP UPP2 151531 hgsc.bcm.edu hg19 2 158971732 158971732 + Silent SNP A A G novel TCGA-DZ-6133-01A-11D-1961-08 TCGA-DZ-6133-10A-01D-1962-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dac1245d-4f00-4d28-bbc0-cdaf6beba2d0 e6107469-78da-4831-a87a-9fc0dbccbd8e . UPP2 NM_001135098 exon5 c.A471G p.R157R AGACAGATACTGT . 131.0 39.0 140.0 0.0 . 60 . . . none . . PASS Atlas-SNP TTN 7273 hgsc.bcm.edu hg19 2 179430006 179430006 + Silent SNP G G T novel TCGA-DZ-6133-01A-11D-1961-08 TCGA-DZ-6133-10A-01D-1962-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dac1245d-4f00-4d28-bbc0-cdaf6beba2d0 e6107469-78da-4831-a87a-9fc0dbccbd8e . TTN NM_001267550 exon326 c.C80853A p.T26951T CGTTACGGTGTAT . 271.0 11.0 211.0 0.0 . 18412 . . . none . . PASS Atlas-SNP TTN 7273 hgsc.bcm.edu hg19 2 179468605 179468605 + Missense_Mutation SNP A A G novel TCGA-DZ-6133-01A-11D-1961-08 TCGA-DZ-6133-10A-01D-1962-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dac1245d-4f00-4d28-bbc0-cdaf6beba2d0 e6107469-78da-4831-a87a-9fc0dbccbd8e . TTN NM_001267550 exon282 c.T54809C p.I18270T TTACATATGGGAT . 78.0 28.0 105.0 0.0 . 18412 . . . none . . PASS Atlas-SNP RPL37A 6168 hgsc.bcm.edu hg19 2 217364692 217364692 + Silent SNP T T A novel TCGA-DZ-6133-01A-11D-1961-08 TCGA-DZ-6133-10A-01D-1962-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dac1245d-4f00-4d28-bbc0-cdaf6beba2d0 e6107469-78da-4831-a87a-9fc0dbccbd8e . RPL37A NM_000998 exon3 c.T153A p.A51A ACGAGCTGTGGGG . 177.0 92.0 159.0 0.0 . 9 . . . none . . PASS Atlas-SNP NBEAL2 23218 hgsc.bcm.edu hg19 3 47049869 47049869 + Missense_Mutation SNP G G A novel TCGA-DZ-6133-01A-11D-1961-08 TCGA-DZ-6133-10A-01D-1962-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dac1245d-4f00-4d28-bbc0-cdaf6beba2d0 e6107469-78da-4831-a87a-9fc0dbccbd8e . NBEAL2 NM_015175 exon51 c.G7816A p.A2606T CACCTGGCATTGG . 43.0 25.0 33.0 0.0 . 267 . . . none . . PASS Atlas-SNP NICN1 84276 hgsc.bcm.edu hg19 3 49463424 49463424 + Silent SNP C C G novel TCGA-DZ-6133-01A-11D-1961-08 TCGA-DZ-6133-10A-01D-1962-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dac1245d-4f00-4d28-bbc0-cdaf6beba2d0 e6107469-78da-4831-a87a-9fc0dbccbd8e . NICN1 NM_032316 exon3 c.G315C p.L105L GTCACACAGCATC . 41.0 13.0 54.0 0.0 . 15 . . . none . . PASS Atlas-SNP PCBP4 57060 hgsc.bcm.edu hg19 3 51995031 51995031 + Missense_Mutation SNP C C A novel TCGA-DZ-6133-01A-11D-1961-08 TCGA-DZ-6133-10A-01D-1962-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dac1245d-4f00-4d28-bbc0-cdaf6beba2d0 e6107469-78da-4831-a87a-9fc0dbccbd8e . PCBP4 NM_033008 exon3 c.G100T p.G34W CCTTCCCGATGAT . 180.0 13.0 207.0 0.0 . 35 . . . none . . PASS Atlas-SNP POC1A 25886 hgsc.bcm.edu hg19 3 52109979 52109979 + Missense_Mutation SNP C C A rs375422052 alternate_allele TCGA-DZ-6133-01A-11D-1961-08 TCGA-DZ-6133-10A-01D-1962-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dac1245d-4f00-4d28-bbc0-cdaf6beba2d0 e6107469-78da-4831-a87a-9fc0dbccbd8e . POC1A NM_015426 exon11 c.G1148T p.R383L GTCAACCGCTGCT . 214.0 10.0 196.0 0.0 . 32 . . . alt . . PASS Atlas-SNP SFMBT1 51460 hgsc.bcm.edu hg19 3 52988412 52988412 + Missense_Mutation SNP A A G novel TCGA-DZ-6133-01A-11D-1961-08 TCGA-DZ-6133-10A-01D-1962-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dac1245d-4f00-4d28-bbc0-cdaf6beba2d0 e6107469-78da-4831-a87a-9fc0dbccbd8e . SFMBT1 NM_016329 exon3 c.T44C p.M15T TCTTCCATACCAG . 226.0 135.0 223.0 0.0 . 53 . . . none . . PASS Atlas-SNP FAM3D 131177 hgsc.bcm.edu hg19 3 58625897 58625897 + Silent SNP C C A novel TCGA-DZ-6133-01A-11D-1961-08 TCGA-DZ-6133-10A-01D-1962-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dac1245d-4f00-4d28-bbc0-cdaf6beba2d0 e6107469-78da-4831-a87a-9fc0dbccbd8e . FAM3D NM_138805 exon7 c.G330T p.T110T AGCTCCCGTGGTT . 192.0 10.0 218.0 0.0 . 29 . . . none . . PASS Atlas-SNP ZBTB11 27107 hgsc.bcm.edu hg19 3 101390027 101390027 + Missense_Mutation SNP A A G novel TCGA-DZ-6133-01A-11D-1961-08 TCGA-DZ-6133-10A-01D-1962-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dac1245d-4f00-4d28-bbc0-cdaf6beba2d0 e6107469-78da-4831-a87a-9fc0dbccbd8e . ZBTB11 NM_014415 exon3 c.T725C p.L242P ATAAAAAGATCTC . 101.0 29.0 82.0 0.0 . 77 . . . none . . PASS Atlas-SNP ALDH1L1 10840 hgsc.bcm.edu hg19 3 125850317 125850317 + Silent SNP C C A novel TCGA-DZ-6133-01A-11D-1961-08 TCGA-DZ-6133-10A-01D-1962-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dac1245d-4f00-4d28-bbc0-cdaf6beba2d0 e6107469-78da-4831-a87a-9fc0dbccbd8e ALDH1L1,caecum,carcinoma,0,1 ALDH1L1 NM_001270364 exon13 c.G1563T p.A521A GGCACCCGCATCC . 101.0 9.0 110.0 0.0 . 138 . . . none . . PASS Atlas-SNP SLCO2A1 6578 hgsc.bcm.edu hg19 3 133692538 133692538 + Silent SNP G G C rs150677069 alternate_allele TCGA-DZ-6133-01A-11D-1961-08 TCGA-DZ-6133-10A-01D-1962-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dac1245d-4f00-4d28-bbc0-cdaf6beba2d0 e6107469-78da-4831-a87a-9fc0dbccbd8e . SLCO2A1 NM_005630 exon3 c.C366G p.S122S GGGCTCGGAGAGG . 34.0 9.0 43.0 0.0 . 72 . . . alt G|1.000;A|0.000 . PASS Atlas-SNP PSMD2 5708 hgsc.bcm.edu hg19 3 184026587 184026587 + Missense_Mutation SNP G G T novel TCGA-DZ-6133-01A-11D-1961-08 TCGA-DZ-6133-10A-01D-1962-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dac1245d-4f00-4d28-bbc0-cdaf6beba2d0 e6107469-78da-4831-a87a-9fc0dbccbd8e . PSMD2 NM_002808 exon21 c.G2636T p.R879L GGGAACGGGCAGA . 246.0 11.0 262.0 0.0 . 56 . . . none . . PASS Atlas-SNP ATP13A3 79572 hgsc.bcm.edu hg19 3 194146121 194146121 + Missense_Mutation SNP G G A novel TCGA-DZ-6133-01A-11D-1961-08 TCGA-DZ-6133-10A-01D-1962-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dac1245d-4f00-4d28-bbc0-cdaf6beba2d0 e6107469-78da-4831-a87a-9fc0dbccbd8e . ATP13A3 NM_024524 exon29 c.C3263T p.A1088V GCAATTGCCACTA . 101.0 54.0 69.0 0.0 . 94 . . . none . . PASS Atlas-SNP ZBTB49 166793 hgsc.bcm.edu hg19 4 4322599 4322599 + Silent SNP C C A novel TCGA-DZ-6133-01A-11D-1961-08 TCGA-DZ-6133-10A-01D-1962-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dac1245d-4f00-4d28-bbc0-cdaf6beba2d0 e6107469-78da-4831-a87a-9fc0dbccbd8e . ZBTB49 NM_145291 exon8 c.C1854A p.S618S TTTCTCCCAAGAC . 39.0 21.0 62.0 0.0 . 63 . . . none . . PASS Atlas-SNP CCKAR 886 hgsc.bcm.edu hg19 4 26483517 26483517 + Missense_Mutation SNP C C T novel TCGA-DZ-6133-01A-11D-1961-08 TCGA-DZ-6133-10A-01D-1962-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dac1245d-4f00-4d28-bbc0-cdaf6beba2d0 e6107469-78da-4831-a87a-9fc0dbccbd8e . CCKAR NM_000730 exon5 c.G1030A p.E344K GGCGCTCTGCGGA . 77.0 34.0 120.0 0.0 . 74 . . . none . . PASS Atlas-SNP ANXA3 306 hgsc.bcm.edu hg19 4 79516549 79516549 + Silent SNP A A G novel TCGA-DZ-6133-01A-11D-1961-08 TCGA-DZ-6133-10A-01D-1962-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dac1245d-4f00-4d28-bbc0-cdaf6beba2d0 e6107469-78da-4831-a87a-9fc0dbccbd8e . ANXA3 NM_005139 exon8 c.A498G p.E166E AGATGAAAGTCTG . 259.0 95.0 265.0 0.0 . 35 . . . none . . PASS Atlas-SNP PLRG1 5356 hgsc.bcm.edu hg19 4 155470082 155470082 + Silent SNP T T C novel TCGA-DZ-6133-01A-11D-1961-08 TCGA-DZ-6133-10A-01D-1962-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dac1245d-4f00-4d28-bbc0-cdaf6beba2d0 e6107469-78da-4831-a87a-9fc0dbccbd8e . PLRG1 NM_002669 exon2 c.A15G p.V5V TTTCTGTACCTCC . 29.0 11.0 31.0 0.0 . 43 . . . none . . PASS Atlas-SNP PCSK1 5122 hgsc.bcm.edu hg19 5 95728748 95728748 + Missense_Mutation SNP C C T rs140941383 TCGA-DZ-6133-01A-11D-1961-08 TCGA-DZ-6133-10A-01D-1962-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dac1245d-4f00-4d28-bbc0-cdaf6beba2d0 e6107469-78da-4831-a87a-9fc0dbccbd8e . PCSK1 NM_000439 exon14 c.G2219A p.R740Q AGCAGCCGGTCGT . 255.0 109.0 306.0 1.0 . 93 . . . weak C|1.000;T|0.000 0.000 PASS Atlas-SNP CHD1 1105 hgsc.bcm.edu hg19 5 98236974 98236974 + Missense_Mutation SNP T T C rs370850474 TCGA-DZ-6133-01A-11D-1961-08 TCGA-DZ-6133-10A-01D-1962-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dac1245d-4f00-4d28-bbc0-cdaf6beba2d0 e6107469-78da-4831-a87a-9fc0dbccbd8e . CHD1 NM_001270 exon5 c.A503G p.E168G CTCTCTTCTTCAG . 144.0 63.0 149.0 0.0 . 137 . . . weak . . PASS Atlas-SNP GTF2H4 2968 hgsc.bcm.edu hg19 6 30877829 30877829 + Silent SNP C C T novel TCGA-DZ-6133-01A-11D-1961-08 TCGA-DZ-6133-10A-01D-1962-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dac1245d-4f00-4d28-bbc0-cdaf6beba2d0 e6107469-78da-4831-a87a-9fc0dbccbd8e . GTF2H4 NM_001517 exon4 c.C363T p.A121A CATTGCCCTTCTG . 133.0 57.0 243.0 1.0 . 38 . . . none . . PASS Atlas-SNP HLA-DQA2 3118 hgsc.bcm.edu hg19 6 32714066 32714066 + Silent SNP C C T novel TCGA-DZ-6133-01A-11D-1961-08 TCGA-DZ-6133-10A-01D-1962-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dac1245d-4f00-4d28-bbc0-cdaf6beba2d0 e6107469-78da-4831-a87a-9fc0dbccbd8e . HLA-DQA2 NM_020056 exon4 c.C663T p.C221C GGTCTGCGCCCTG . 154.0 73.0 217.0 1.0 . 27 . . . none . . PASS Atlas-SNP SYNE1 23345 hgsc.bcm.edu hg19 6 152671451 152671451 + Missense_Mutation SNP T T C novel TCGA-DZ-6133-01A-11D-1961-08 TCGA-DZ-6133-10A-01D-1962-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dac1245d-4f00-4d28-bbc0-cdaf6beba2d0 e6107469-78da-4831-a87a-9fc0dbccbd8e SYNE1_ENST00000265368,NS,carcinoma,0,2 SYNE1 NM_182961 exon72 c.A11753G p.E3918G TTCGCCTCCAGAC . 85.0 23.0 155.0 0.0 . 3227 . . . none . . PASS Atlas-SNP ARID1B 57492 hgsc.bcm.edu hg19 6 157527600 157527600 + Silent SNP G G A novel TCGA-DZ-6133-01A-11D-1961-08 TCGA-DZ-6133-10A-01D-1962-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dac1245d-4f00-4d28-bbc0-cdaf6beba2d0 e6107469-78da-4831-a87a-9fc0dbccbd8e . ARID1B NM_020732 exon20 c.G5325A p.K1775K CCCAAAGGAGAAG . 114.0 43.0 133.0 0.0 . 320 . . . none . . PASS Atlas-SNP ABCB1 5243 hgsc.bcm.edu hg19 7 87179321 87179321 + Missense_Mutation SNP C C A novel TCGA-DZ-6133-01A-11D-1961-08 TCGA-DZ-6133-10A-01D-1962-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dac1245d-4f00-4d28-bbc0-cdaf6beba2d0 e6107469-78da-4831-a87a-9fc0dbccbd8e . ABCB1 NM_000927 exon14 c.G1400T p.R467L ATTTCCCGTAGAA . 243.0 12.0 171.0 0.0 . 263 . . . none . . PASS Atlas-SNP ANGPT2 285 hgsc.bcm.edu hg19 8 6360731 6360731 + Missense_Mutation SNP G G T novel TCGA-DZ-6133-01A-11D-1961-08 TCGA-DZ-6133-10A-01D-1962-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dac1245d-4f00-4d28-bbc0-cdaf6beba2d0 e6107469-78da-4831-a87a-9fc0dbccbd8e . ANGPT2 NM_001147 exon9 c.C1382A p.P461Q CTCTGTGGATAGT . 66.0 24.0 88.0 0.0 . 126 . . . none . . PASS Atlas-SNP BIN3 55909 hgsc.bcm.edu hg19 8 22488017 22488017 + Silent SNP G G A novel TCGA-DZ-6133-01A-11D-1961-08 TCGA-DZ-6133-10A-01D-1962-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dac1245d-4f00-4d28-bbc0-cdaf6beba2d0 e6107469-78da-4831-a87a-9fc0dbccbd8e . BIN3 NM_018688 exon5 c.C235T p.L79L TGTTCAGAAGGTC . 165.0 65.0 289.0 0.0 . 16 . . . none . . PASS Atlas-SNP RAB11FIP1 80223 hgsc.bcm.edu hg19 8 37732715 37732715 + Missense_Mutation SNP G G T novel TCGA-DZ-6133-01A-11D-1961-08 TCGA-DZ-6133-10A-01D-1962-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dac1245d-4f00-4d28-bbc0-cdaf6beba2d0 e6107469-78da-4831-a87a-9fc0dbccbd8e RAB11FIP1,brain,primitive_neuroectodermal_tumour-medulloblastoma,0,1 RAB11FIP1 NM_025151 exon3 c.C940A p.R314S TAGAGCGGGAAAG . 302.0 13.0 473.0 1.0 . 105 . . . none . . PASS Atlas-SNP PTPRD 5789 hgsc.bcm.edu hg19 9 8471073 8471073 + Missense_Mutation SNP T T C novel TCGA-DZ-6133-01A-11D-1961-08 TCGA-DZ-6133-10A-01D-1962-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dac1245d-4f00-4d28-bbc0-cdaf6beba2d0 e6107469-78da-4831-a87a-9fc0dbccbd8e . PTPRD NM_002839 exon31 c.A3426G p.I1142M AATTATTATGTAG . 122.0 56.0 106.0 0.0 . 1348 . . . none . . PASS Atlas-SNP TOPORS 10210 hgsc.bcm.edu hg19 9 32541815 32541815 + Missense_Mutation SNP C C G rs371709773 alternate_allele TCGA-DZ-6133-01A-11D-1961-08 TCGA-DZ-6133-10A-01D-1962-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dac1245d-4f00-4d28-bbc0-cdaf6beba2d0 e6107469-78da-4831-a87a-9fc0dbccbd8e . TOPORS NM_005802 exon3 c.G2708C p.R903P GGGGAACGTGAAG . 184.0 71.0 240.0 0.0 . 127 . . . alt . . PASS Atlas-SNP VCP 7415 hgsc.bcm.edu hg19 9 35061057 35061057 + Silent SNP A A G novel TCGA-DZ-6133-01A-11D-1961-08 TCGA-DZ-6133-10A-01D-1962-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dac1245d-4f00-4d28-bbc0-cdaf6beba2d0 e6107469-78da-4831-a87a-9fc0dbccbd8e . VCP NM_007126 exon11 c.T1314C p.D438D CTCGGCATCAATG . 252.0 122.0 409.0 1.0 . 64 . . . none . . PASS Atlas-SNP TMEM2 23670 hgsc.bcm.edu hg19 9 74313090 74313090 + Missense_Mutation SNP G G T novel TCGA-DZ-6133-01A-11D-1961-08 TCGA-DZ-6133-10A-01D-1962-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dac1245d-4f00-4d28-bbc0-cdaf6beba2d0 e6107469-78da-4831-a87a-9fc0dbccbd8e . TMEM2 NM_013390 exon20 c.C3408A p.S1136R CCTGTGGCTTTTG . 146.0 54.0 156.0 0.0 . 112 . . . none . . PASS Atlas-SNP SPATA31D1 389763 hgsc.bcm.edu hg19 9 84609482 84609482 + Missense_Mutation SNP T T C novel TCGA-DZ-6133-01A-11D-1961-08 TCGA-DZ-6133-10A-01D-1962-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dac1245d-4f00-4d28-bbc0-cdaf6beba2d0 e6107469-78da-4831-a87a-9fc0dbccbd8e . . NM_001001670 exon4 c.T4097C p.I1366T CCAGCATATCATA . 25.0 12.0 40.0 0.0 . . . . . none . . PASS Atlas-SNP PAPPA 5069 hgsc.bcm.edu hg19 9 118949550 118949550 + Missense_Mutation SNP G G T novel TCGA-DZ-6133-01A-11D-1961-08 TCGA-DZ-6133-10A-01D-1962-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dac1245d-4f00-4d28-bbc0-cdaf6beba2d0 e6107469-78da-4831-a87a-9fc0dbccbd8e . PAPPA NM_002581 exon2 c.G533T p.R178L CAGACCGAGCCCG . 76.0 29.0 132.0 0.0 . 243 . . . none . . PASS Atlas-SNP SPTAN1 6709 hgsc.bcm.edu hg19 9 131370474 131370474 + Silent SNP C C A rs2228951 bycluster;byfrequency;byhapmap;by1000genomes;alternate_allele TCGA-DZ-6133-01A-11D-1961-08 TCGA-DZ-6133-10A-01D-1962-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dac1245d-4f00-4d28-bbc0-cdaf6beba2d0 e6107469-78da-4831-a87a-9fc0dbccbd8e . SPTAN1 NM_003127 exon34 c.C4410A p.T1470T GAATACCGAAGAC . 212.0 11.0 323.0 0.0 . 266 . . . alt C|0.996;T|0.004 . PASS Atlas-SNP CPEB3 22849 hgsc.bcm.edu hg19 10 93812079 93812079 + Missense_Mutation SNP A A G novel TCGA-DZ-6133-01A-11D-1961-08 TCGA-DZ-6133-10A-01D-1962-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dac1245d-4f00-4d28-bbc0-cdaf6beba2d0 e6107469-78da-4831-a87a-9fc0dbccbd8e . CPEB3 NM_014912 exon10 c.T1987C p.C663R ATTCACAGTAATA . 45.0 19.0 86.0 0.0 . 43 . . . none . . PASS Atlas-SNP HARBI1 283254 hgsc.bcm.edu hg19 11 46637368 46637368 + Silent SNP C C A novel TCGA-DZ-6133-01A-11D-1961-08 TCGA-DZ-6133-10A-01D-1962-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dac1245d-4f00-4d28-bbc0-cdaf6beba2d0 e6107469-78da-4831-a87a-9fc0dbccbd8e . HARBI1 NM_173811 exon2 c.G420T p.G140G TGGCATCCCTGCC . 226.0 84.0 417.0 0.0 . 19 . . . none . . PASS Atlas-SNP PPP6R3 55291 hgsc.bcm.edu hg19 11 68377390 68377390 + Silent SNP T T A novel TCGA-DZ-6133-01A-11D-1961-08 TCGA-DZ-6133-10A-01D-1962-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dac1245d-4f00-4d28-bbc0-cdaf6beba2d0 e6107469-78da-4831-a87a-9fc0dbccbd8e . PPP6R3 NM_001164160 exon24 c.T2487A p.S829S ACTGTCTACCTCT . 124.0 54.0 205.0 0.0 . 159 . . . none . . PASS Atlas-SNP CACNA1C 775 hgsc.bcm.edu hg19 12 2566788 2566788 + Nonsense_Mutation SNP G G T novel TCGA-DZ-6133-01A-11D-1961-08 TCGA-DZ-6133-10A-01D-1962-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dac1245d-4f00-4d28-bbc0-cdaf6beba2d0 e6107469-78da-4831-a87a-9fc0dbccbd8e CACNA1C_ENST00000344100,NS,carcinoma,0,2 CACNA1C NM_001129831 exon5 c.G673T p.G225X GCTCTCGGAGGGA . 246.0 10.0 340.0 0.0 . 1023 . . . none . . PASS Atlas-SNP PEX5 5830 hgsc.bcm.edu hg19 12 7343122 7343122 + Missense_Mutation SNP T T C novel TCGA-DZ-6133-01A-11D-1961-08 TCGA-DZ-6133-10A-01D-1962-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dac1245d-4f00-4d28-bbc0-cdaf6beba2d0 e6107469-78da-4831-a87a-9fc0dbccbd8e . PEX5 NM_001131023 exon2 c.T149C p.V50A AGGCAGTGAGTGT . 21.0 11.0 22.0 0.0 . 63 . . . none . . PASS Atlas-SNP ITPR2 3709 hgsc.bcm.edu hg19 12 26749865 26749865 + Missense_Mutation SNP G G T novel TCGA-DZ-6133-01A-11D-1961-08 TCGA-DZ-6133-10A-01D-1962-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dac1245d-4f00-4d28-bbc0-cdaf6beba2d0 e6107469-78da-4831-a87a-9fc0dbccbd8e . ITPR2 NM_002223 exon31 c.C4205A p.P1402Q TCCAGCGGGAGAA . 126.0 9.0 97.0 0.0 . 270 . . . none . . PASS Atlas-SNP IPO8 10526 hgsc.bcm.edu hg19 12 30790088 30790088 + Silent SNP C C G novel TCGA-DZ-6133-01A-11D-1961-08 TCGA-DZ-6133-10A-01D-1962-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dac1245d-4f00-4d28-bbc0-cdaf6beba2d0 e6107469-78da-4831-a87a-9fc0dbccbd8e . IPO8 NM_006390 exon22 c.G2523C p.L841L GATACTCAGTCCT . 126.0 78.0 93.0 0.0 . 105 . . . none . . PASS Atlas-SNP FAM60A 58516 hgsc.bcm.edu hg19 12 31435663 31435663 + Missense_Mutation SNP A A C novel TCGA-DZ-6133-01A-11D-1961-08 TCGA-DZ-6133-10A-01D-1962-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dac1245d-4f00-4d28-bbc0-cdaf6beba2d0 e6107469-78da-4831-a87a-9fc0dbccbd8e . FAM60A NM_021238 exon7 c.T649G p.S217A GAGTGGAGATGGG . 94.0 51.0 112.0 0.0 . 16 . . . none . . PASS Atlas-SNP HSP90B1 7184 hgsc.bcm.edu hg19 12 104336447 104336447 + Missense_Mutation SNP T T C novel TCGA-DZ-6133-01A-11D-1961-08 TCGA-DZ-6133-10A-01D-1962-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dac1245d-4f00-4d28-bbc0-cdaf6beba2d0 e6107469-78da-4831-a87a-9fc0dbccbd8e . HSP90B1 NM_003299 exon12 c.T1517C p.L506P CACGTCTTGCTAA . 159.0 94.0 115.0 0.0 . 72 . . . none . . PASS Atlas-SNP MYO1H 283446 hgsc.bcm.edu hg19 12 109834250 109834250 + Missense_Mutation SNP C C T novel TCGA-DZ-6133-01A-11D-1961-08 TCGA-DZ-6133-10A-01D-1962-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dac1245d-4f00-4d28-bbc0-cdaf6beba2d0 e6107469-78da-4831-a87a-9fc0dbccbd8e MYO1H,NS,carcinoma,0,1 MYO1H NM_001101421 exon3 c.C304T p.L102F TTCATCCTCATTT . 88.0 46.0 61.0 0.0 . 98 . . . none . . PASS Atlas-SNP NCOR2 9612 hgsc.bcm.edu hg19 12 124848291 124848291 + Silent SNP A A G novel TCGA-DZ-6133-01A-11D-1961-08 TCGA-DZ-6133-10A-01D-1962-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dac1245d-4f00-4d28-bbc0-cdaf6beba2d0 e6107469-78da-4831-a87a-9fc0dbccbd8e . NCOR2 NM_006312 exon23 c.T2862C p.N954N TGAGGCATTGGCC . 145.0 77.0 190.0 0.0 . 475 . . . none . . PASS Atlas-SNP EP400 57634 hgsc.bcm.edu hg19 12 132522561 132522561 + Missense_Mutation SNP G G A novel TCGA-DZ-6133-01A-11D-1961-08 TCGA-DZ-6133-10A-01D-1962-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dac1245d-4f00-4d28-bbc0-cdaf6beba2d0 e6107469-78da-4831-a87a-9fc0dbccbd8e . EP400 NM_015409 exon32 c.G6127A p.A2043T GTCAAAGCTGAGG . 230.0 61.0 230.0 0.0 . 370 . . . none . . PASS Atlas-SNP EP400 57634 hgsc.bcm.edu hg19 12 132522562 132522562 + Missense_Mutation SNP C C T novel TCGA-DZ-6133-01A-11D-1961-08 TCGA-DZ-6133-10A-01D-1962-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dac1245d-4f00-4d28-bbc0-cdaf6beba2d0 e6107469-78da-4831-a87a-9fc0dbccbd8e . EP400 NM_015409 exon32 c.C6128T p.A2043V TCAAAGCTGAGGA . 229.0 60.0 231.0 0.0 . 370 . . . none . . PASS Atlas-SNP KBTBD6 89890 hgsc.bcm.edu hg19 13 41704906 41704906 + Missense_Mutation SNP T T C novel TCGA-DZ-6133-01A-11D-1961-08 TCGA-DZ-6133-10A-01D-1962-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dac1245d-4f00-4d28-bbc0-cdaf6beba2d0 e6107469-78da-4831-a87a-9fc0dbccbd8e . KBTBD6 NM_152903 exon1 c.A1742G p.N581S ACCCGGTTCTTTT . 257.0 154.0 230.0 0.0 . 83 . . . none . . PASS Atlas-SNP NALCN 259232 hgsc.bcm.edu hg19 13 101944368 101944368 + Missense_Mutation SNP G G T novel TCGA-DZ-6133-01A-11D-1961-08 TCGA-DZ-6133-10A-01D-1962-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dac1245d-4f00-4d28-bbc0-cdaf6beba2d0 e6107469-78da-4831-a87a-9fc0dbccbd8e . NALCN NM_052867 exon9 c.C1020A p.S340R AGTGCTGCTTCTC . 52.0 33.0 69.0 0.0 . 431 . . . none . . PASS Atlas-SNP SIPA1L1 26037 hgsc.bcm.edu hg19 14 72055716 72055716 + Missense_Mutation SNP T T C novel TCGA-DZ-6133-01A-11D-1961-08 TCGA-DZ-6133-10A-01D-1962-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dac1245d-4f00-4d28-bbc0-cdaf6beba2d0 e6107469-78da-4831-a87a-9fc0dbccbd8e . SIPA1L1 NM_015556 exon2 c.T1127C p.L376P GACCTCTGTCTCA . 68.0 25.0 111.0 0.0 . 219 . . . none . . PASS Atlas-SNP THBS1 7057 hgsc.bcm.edu hg19 15 39885267 39885267 + Missense_Mutation SNP T T C novel TCGA-DZ-6133-01A-11D-1961-08 TCGA-DZ-6133-10A-01D-1962-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dac1245d-4f00-4d28-bbc0-cdaf6beba2d0 e6107469-78da-4831-a87a-9fc0dbccbd8e . THBS1 NM_003246 exon18 c.T2834C p.I945T ATGACATCTGTCC . 73.0 33.0 104.0 0.0 . 106 . . . none . . PASS Atlas-SNP ZFP106 64397 hgsc.bcm.edu hg19 15 42742117 42742117 + Missense_Mutation SNP C C A novel TCGA-DZ-6133-01A-11D-1961-08 TCGA-DZ-6133-10A-01D-1962-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dac1245d-4f00-4d28-bbc0-cdaf6beba2d0 e6107469-78da-4831-a87a-9fc0dbccbd8e . ZFP106 NM_022473 exon2 c.G2284T p.G762C GGTGACCGCTAAT . 163.0 9.0 252.0 0.0 . 117 . . . none . . PASS Atlas-SNP EPB42 2038 hgsc.bcm.edu hg19 15 43508525 43508525 + Missense_Mutation SNP C C T rs202154600 bycluster TCGA-DZ-6133-01A-11D-1961-08 TCGA-DZ-6133-10A-01D-1962-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dac1245d-4f00-4d28-bbc0-cdaf6beba2d0 e6107469-78da-4831-a87a-9fc0dbccbd8e EPB42,caecum,carcinoma,0,1 EPB42 NM_000119 exon2 c.G227A p.R76H GGAGCGCGGAAGT . 72.0 33.0 121.0 1.0 . 53 . . . weak C|0.999;T|0.001 0.001 PASS Atlas-SNP HMG20A 10363 hgsc.bcm.edu hg19 15 77756662 77756662 + Missense_Mutation SNP A A G novel TCGA-DZ-6133-01A-11D-1961-08 TCGA-DZ-6133-10A-01D-1962-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dac1245d-4f00-4d28-bbc0-cdaf6beba2d0 e6107469-78da-4831-a87a-9fc0dbccbd8e . HMG20A NM_018200 exon4 c.A170G p.Q57R TCTCTCAAGGTCA . 93.0 38.0 101.0 0.0 . 48 . . . none . . PASS Atlas-SNP TSC2 7249 hgsc.bcm.edu hg19 16 2130345 2130345 + Missense_Mutation SNP G G A novel TCGA-DZ-6133-01A-11D-1961-08 TCGA-DZ-6133-10A-01D-1962-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dac1245d-4f00-4d28-bbc0-cdaf6beba2d0 e6107469-78da-4831-a87a-9fc0dbccbd8e . TSC2 NM_001114382 exon30 c.G3577A p.G1193S ACCCAGGGCTGGG . 98.0 25.0 118.0 0.0 . 364 . . . none . . PASS Atlas-SNP LOC81691 0 hgsc.bcm.edu hg19 16 20851091 20851091 + Silent SNP C C T novel TCGA-DZ-6133-01A-11D-1961-08 TCGA-DZ-6133-10A-01D-1962-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dac1245d-4f00-4d28-bbc0-cdaf6beba2d0 e6107469-78da-4831-a87a-9fc0dbccbd8e . LOC81691 NM_030941 exon14 c.C1398T p.A466A GCAGGCCAGAGTG . 503.0 316.0 517.0 1.0 . 41 . . . none . . PASS Atlas-SNP CTDNEP1 23399 hgsc.bcm.edu hg19 17 7149598 7149598 + Missense_Mutation SNP A A G novel TCGA-DZ-6133-01A-11D-1961-08 TCGA-DZ-6133-10A-01D-1962-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dac1245d-4f00-4d28-bbc0-cdaf6beba2d0 e6107469-78da-4831-a87a-9fc0dbccbd8e . CTDNEP1 NM_001143775 exon5 c.T452C p.I151T TTAAGAATGCTTC . 154.0 42.0 155.0 0.0 . 26 . . . none . . PASS Atlas-SNP NCOR1 9611 hgsc.bcm.edu hg19 17 16089949 16089949 + Nonsense_Mutation SNP G G C novel TCGA-DZ-6133-01A-11D-1961-08 TCGA-DZ-6133-10A-01D-1962-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dac1245d-4f00-4d28-bbc0-cdaf6beba2d0 e6107469-78da-4831-a87a-9fc0dbccbd8e . NCOR1 NM_001190440 exon2 c.C161G p.S54X AGCTGTGATGCCT . 98.0 29.0 70.0 0.0 . 240 . . . none . . PASS Atlas-SNP SRCIN1 80725 hgsc.bcm.edu hg19 17 36708962 36708962 + Missense_Mutation SNP C C G novel TCGA-DZ-6133-01A-11D-1961-08 TCGA-DZ-6133-10A-01D-1962-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dac1245d-4f00-4d28-bbc0-cdaf6beba2d0 e6107469-78da-4831-a87a-9fc0dbccbd8e . SRCIN1 NM_025248 exon12 c.G2331C p.K777N CCCACCCTTGAGC . 99.0 32.0 121.0 0.0 . 66 . . . none . . PASS Atlas-SNP CASC3 22794 hgsc.bcm.edu hg19 17 38319005 38319005 + Nonsense_Mutation SNP G G A novel TCGA-DZ-6133-01A-11D-1961-08 TCGA-DZ-6133-10A-01D-1962-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dac1245d-4f00-4d28-bbc0-cdaf6beba2d0 e6107469-78da-4831-a87a-9fc0dbccbd8e . CASC3 NM_007359 exon6 c.G636A p.W212X GCTATGGAAGGAT . 59.0 15.0 67.0 0.0 . 39 . . . none . . PASS Atlas-SNP COIL 8161 hgsc.bcm.edu hg19 17 55028268 55028268 + Missense_Mutation SNP C C A rs373166690 alternate_allele TCGA-DZ-6133-01A-11D-1961-08 TCGA-DZ-6133-10A-01D-1962-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dac1245d-4f00-4d28-bbc0-cdaf6beba2d0 e6107469-78da-4831-a87a-9fc0dbccbd8e . COIL NM_004645 exon2 c.G335T p.R112L AATGCCCGCTTCT . 236.0 10.0 143.0 0.0 . 49 . . . alt . . PASS Atlas-SNP MPO 4353 hgsc.bcm.edu hg19 17 56348163 56348163 + Missense_Mutation SNP A A T novel TCGA-DZ-6133-01A-11D-1961-08 TCGA-DZ-6133-10A-01D-1962-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dac1245d-4f00-4d28-bbc0-cdaf6beba2d0 e6107469-78da-4831-a87a-9fc0dbccbd8e . MPO NM_000250 exon12 c.T2092A p.S698T GCAATGAGATCTG . 93.0 57.0 144.0 0.0 . 114 . . . none . . PASS Atlas-SNP KCNJ16 3773 hgsc.bcm.edu hg19 17 68129132 68129132 + Silent SNP C C A rs142625269 alternate_allele TCGA-DZ-6133-01A-11D-1961-08 TCGA-DZ-6133-10A-01D-1962-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dac1245d-4f00-4d28-bbc0-cdaf6beba2d0 e6107469-78da-4831-a87a-9fc0dbccbd8e . KCNJ16 NM_001270422 exon6 c.C904A p.R302R GTTCCCCGAGAAA . 151.0 9.0 127.0 0.0 . 72 . . . alt C|1.000;T|0.000 . PASS Atlas-SNP RAB37 326624 hgsc.bcm.edu hg19 17 72736999 72736999 + Silent SNP C C A rs146770958 bycluster;byfrequency;alternate_allele TCGA-DZ-6133-01A-11D-1961-08 TCGA-DZ-6133-10A-01D-1962-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dac1245d-4f00-4d28-bbc0-cdaf6beba2d0 e6107469-78da-4831-a87a-9fc0dbccbd8e . RAB37 NM_001163989 exon2 c.C201A p.T67T AGCCACCGTCGGC . 188.0 9.0 214.0 0.0 . 69 . . . alt C|1.000;T|0.000 . PASS Atlas-SNP PSMD8 5714 hgsc.bcm.edu hg19 19 38874011 38874011 + Missense_Mutation SNP A A G novel TCGA-DZ-6133-01A-11D-1961-08 TCGA-DZ-6133-10A-01D-1962-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dac1245d-4f00-4d28-bbc0-cdaf6beba2d0 e6107469-78da-4831-a87a-9fc0dbccbd8e . PSMD8 NM_002812 exon7 c.A1034G p.Q345R CCCGGCAGCTGGA . 28.0 9.0 66.0 0.0 . 31 . . . none . . PASS Atlas-SNP CEACAM6 4680 hgsc.bcm.edu hg19 19 42260867 42260867 + Missense_Mutation SNP C C A novel TCGA-DZ-6133-01A-11D-1961-08 TCGA-DZ-6133-10A-01D-1962-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dac1245d-4f00-4d28-bbc0-cdaf6beba2d0 e6107469-78da-4831-a87a-9fc0dbccbd8e CEACAM6,NS,carcinoma,0,1 CEACAM6 NM_002483 exon2 c.C424A p.P142T GTATACCGTGAGT . 299.0 17.0 514.0 0.0 . 52 . . . none . . PASS Atlas-SNP ZNF180 7733 hgsc.bcm.edu hg19 19 44981073 44981073 + Missense_Mutation SNP G G C novel TCGA-DZ-6133-01A-11D-1961-08 TCGA-DZ-6133-10A-01D-1962-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dac1245d-4f00-4d28-bbc0-cdaf6beba2d0 e6107469-78da-4831-a87a-9fc0dbccbd8e . ZNF180 NM_013256 exon5 c.C1625G p.T542S GTGTGAGTTCTTT . 89.0 33.0 96.0 0.0 . 103 . . . none . . PASS Atlas-SNP LILRA3 11026 hgsc.bcm.edu hg19 19 54803120 54803120 + Missense_Mutation SNP G G T novel TCGA-DZ-6133-01A-11D-1961-08 TCGA-DZ-6133-10A-01D-1962-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dac1245d-4f00-4d28-bbc0-cdaf6beba2d0 e6107469-78da-4831-a87a-9fc0dbccbd8e . LILRA3 NM_006865 exon4 c.C557A p.P186H CTCACGGGGCCCA . 98.0 44.0 215.0 0.0 . 65 . . . none . . PASS Atlas-SNP ZNF324B 388569 hgsc.bcm.edu hg19 19 58966903 58966903 + Missense_Mutation SNP T T A novel TCGA-DZ-6133-01A-11D-1961-08 TCGA-DZ-6133-10A-01D-1962-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dac1245d-4f00-4d28-bbc0-cdaf6beba2d0 e6107469-78da-4831-a87a-9fc0dbccbd8e . ZNF324B NM_207395 exon4 c.T592A p.C198S AAGCCATGTGCAC . 44.0 17.0 117.0 0.0 . 58 . . . none . . PASS Atlas-SNP EPB41L1 2036 hgsc.bcm.edu hg19 20 34800245 34800245 + Missense_Mutation SNP A A G novel TCGA-DZ-6133-01A-11D-1961-08 TCGA-DZ-6133-10A-01D-1962-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dac1245d-4f00-4d28-bbc0-cdaf6beba2d0 e6107469-78da-4831-a87a-9fc0dbccbd8e . EPB41L1 NM_001258329 exon17 c.A2131G p.I711V AAGAAGATTGAGC . 95.0 33.0 93.0 0.0 . 111 . . . none . . PASS Atlas-SNP SETD4 54093 hgsc.bcm.edu hg19 21 37410517 37410517 + Missense_Mutation SNP C C G novel TCGA-DZ-6133-01A-11D-1961-08 TCGA-DZ-6133-10A-01D-1962-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dac1245d-4f00-4d28-bbc0-cdaf6beba2d0 e6107469-78da-4831-a87a-9fc0dbccbd8e . SETD4 NM_017438 exon10 c.G1119C p.K373N ACTTGTCTTCTCA . 133.0 62.0 138.0 0.0 . 37 . . . none . . PASS Atlas-SNP CERK 64781 hgsc.bcm.edu hg19 22 47108141 47108141 + Missense_Mutation SNP T T G novel TCGA-DZ-6133-01A-11D-1961-08 TCGA-DZ-6133-10A-01D-1962-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dac1245d-4f00-4d28-bbc0-cdaf6beba2d0 e6107469-78da-4831-a87a-9fc0dbccbd8e . CERK NM_022766 exon4 c.A429C p.K143N TTGTCCTTTTCCT . 66.0 26.0 54.0 0.0 . 40 . . . none . . PASS Atlas-SNP AMER1 139285 hgsc.bcm.edu hg19 X 63411696 63411696 + Missense_Mutation SNP G G A novel TCGA-DZ-6133-01A-11D-1961-08 TCGA-DZ-6133-10A-01D-1962-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dac1245d-4f00-4d28-bbc0-cdaf6beba2d0 e6107469-78da-4831-a87a-9fc0dbccbd8e . . NM_152424 exon2 c.C1471T p.R491C CCCTGCGGACAAG . 25.0 21.0 77.0 0.0 . . . . . none . . PASS Atlas-SNP TMPO 7112 hgsc.bcm.edu hg19 12 98941479 98941479 + Frame_Shift_Del DEL A A - novel TCGA-DZ-6133-01A-11D-1961-08 TCGA-DZ-6133-10A-01D-1962-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dac1245d-4f00-4d28-bbc0-cdaf6beba2d0 e6107469-78da-4831-a87a-9fc0dbccbd8e . TMPO NM_001032283 exon9 c.1207delG p.E403fs . . 109.0 47.0 95.0 0.0 . 111 . 0.431193 0 none . . PASS Atlas-INDEL UBR4 23352 hgsc.bcm.edu hg19 1 19448476 19448477 + Frame_Shift_Ins INS - - A novel TCGA-DZ-6133-01A-11D-1961-08 TCGA-DZ-6133-10A-01D-1962-08 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dac1245d-4f00-4d28-bbc0-cdaf6beba2d0 e6107469-78da-4831-a87a-9fc0dbccbd8e . UBR4 NM_020765 exon67 c.9847_9848insT p.A3283fs . . 75.0 30.0 105.0 0.0 . 415 . 0.4 0 none . . PASS Atlas-INDEL SCN8A 6334 hgsc.bcm.edu hg19 12 52145329 52145329 + Frame_Shift_Del DEL C C - novel TCGA-DZ-6133-01A-11D-1961-08 TCGA-DZ-6133-10A-01D-1962-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dac1245d-4f00-4d28-bbc0-cdaf6beba2d0 e6107469-78da-4831-a87a-9fc0dbccbd8e . SCN8A NM_001177984 exon14 c.2321delA p.H774fs . . 109.0 36.0 108.0 0.0 . 331 . 0.330275 0 none . . PASS Atlas-INDEL RRP12 23223 hgsc.bcm.edu hg19 10 99120314 99120314 + Frame_Shift_Del DEL G G - novel TCGA-DZ-6133-01A-11D-1961-08 TCGA-DZ-6133-10A-01D-1962-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dac1245d-4f00-4d28-bbc0-cdaf6beba2d0 e6107469-78da-4831-a87a-9fc0dbccbd8e . RRP12 NM_015179 exon31 c.3630delT p.P1210fs . . 81.0 39.0 133.0 0.0 . 97 . 0.481481 0 none . . PASS Atlas-INDEL CDK13 8621 hgsc.bcm.edu hg19 7 40117701 40117701 + Frame_Shift_Del DEL T T - novel TCGA-DZ-6133-01A-11D-1961-08 TCGA-DZ-6133-10A-01D-1962-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dac1245d-4f00-4d28-bbc0-cdaf6beba2d0 e6107469-78da-4831-a87a-9fc0dbccbd8e . CDK13 NM_003718 exon10 c.2877delG p.K959fs . . 139.0 64.0 78.0 0.0 . 114 . 0.460432 0 none . . PASS Atlas-INDEL