Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
TRIM63	84676	hgsc.bcm.edu	hg19	1	26386776	26386776	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	TRIM63	NM_032588	exon4	c.A578T	p.D193V	CGGGAATCCTCCA	.	125.0	25.0	156.0	0.0	.	33	.	.	.	none	.	.	PASS	Atlas-SNP
KIF2C	11004	hgsc.bcm.edu	hg19	1	45206651	45206651	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	KIF2C	NM_006845	exon2	c.C137A	p.A46E	AATGGGCAGAAGG	.	75.0	8.0	69.0	0.0	.	68	.	.	.	none	.	.	PASS	Atlas-SNP
TXNDC12	51060	hgsc.bcm.edu	hg19	1	52494277	52494277	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	TXNDC12	NM_015913	exon3	c.C184A	p.H62N	ATTTATGAATAAT	.	69.0	9.0	103.0	0.0	.	18	.	.	.	none	.	.	PASS	Atlas-SNP
ANKRD35	148741	hgsc.bcm.edu	hg19	1	145561665	145561665	+	Silent	SNP	C	C	T	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	ANKRD35	NM_144698	exon10	c.C1353T	p.T451T	ACAGACCTTTGGC	.	97.0	22.0	113.0	0.0	.	96	.	.	.	none	.	.	PASS	Atlas-SNP
FLAD1	80308	hgsc.bcm.edu	hg19	1	154961016	154961016	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	FLAD1	NM_025207	exon2	c.G808A	p.G270R	ATGAAGGGACTAT	.	69.0	9.0	69.0	0.0	.	52	.	.	.	none	.	.	PASS	Atlas-SNP
LOXL3	84695	hgsc.bcm.edu	hg19	2	74761483	74761483	+	Silent	SNP	G	G	A	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	LOXL3	NM_032603	exon11	c.C1899T	p.H633H	AGCTTTGTGGCCC	.	121.0	20.0	117.0	0.0	.	73	.	.	.	none	.	.	PASS	Atlas-SNP
TUBA3D	113457	hgsc.bcm.edu	hg19	2	132236969	132236969	+	Silent	SNP	G	G	A	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	TUBA3D	NM_080386	exon3	c.G315A	p.R105R	CGCCAGGGGCCAT	.	256.0	40.0	273.0	0.0	.	60	.	.	.	none	.	.	PASS	Atlas-SNP
FIGN	55137	hgsc.bcm.edu	hg19	2	164466515	164466515	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	FIGN	NM_018086	exon3	c.T1827A	p.F609L	CATCAGAAATTCG	.	105.0	23.0	153.0	0.0	.	106	.	.	.	none	.	.	PASS	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179650403	179650403	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	TTN	NM_001267550	exon15	c.A2437T	p.S813C	GAGGGCTAGCTGT	.	88.0	16.0	94.0	0.0	.	18412	.	.	.	none	.	.	PASS	Atlas-SNP
COL6A3	1293	hgsc.bcm.edu	hg19	2	238303376	238303376	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	COL6A3	NM_004369	exon3	c.T563C	p.I188T	CTTGCTATTTCTT	.	85.0	13.0	122.0	0.0	.	608	.	.	.	none	.	.	PASS	Atlas-SNP
RNPEPL1	57140	hgsc.bcm.edu	hg19	2	241516157	241516157	+	Silent	SNP	C	C	T	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	RNPEPL1	NM_018226	exon9	c.C1716T	p.L572L	CCGGCTCCTGGAT	.	83.0	11.0	99.0	0.0	.	32	.	.	.	none	.	.	PASS	Atlas-SNP
SCAP	22937	hgsc.bcm.edu	hg19	3	47456625	47456625	+	Silent	SNP	C	C	T	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	SCAP	NM_012235	exon19	c.G3102A	p.L1034L	GGTCTCCAAGGAG	.	69.0	17.0	65.0	0.0	.	88	.	.	.	none	.	.	PASS	Atlas-SNP
C3orf18	51161	hgsc.bcm.edu	hg19	3	50602964	50602964	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	C3orf18	NM_016210	exon3	c.C167T	p.T56M	CCGGCCGTGCCAC	.	65.0	13.0	67.0	0.0	.	12	.	.	.	none	.	.	PASS	Atlas-SNP
BBX	56987	hgsc.bcm.edu	hg19	3	107491690	107491690	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	BBX	NM_001142568	exon11	c.G1122C	p.E374D	TTTTGAGGCATTG	.	109.0	48.0	99.0	0.0	.	156	.	.	.	none	.	.	PASS	Atlas-SNP
EHHADH	1962	hgsc.bcm.edu	hg19	3	184922367	184922367	+	Silent	SNP	G	G	A	rs149294851	alternate_allele	TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	EHHADH	NM_001966	exon6	c.C747T	p.I249I	CTTCTTGATGCCC	.	289.0	88.0	234.0	0.0	.	73	.	.	.	alt	G|1.000;C|0.000	.	PASS	Atlas-SNP
MFSD10	10227	hgsc.bcm.edu	hg19	4	2934901	2934901	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	MFSD10,bladder,carcinoma,0,1	MFSD10	NM_001120	exon3	c.C304G	p.L102V	CACACAGAAACTG	.	54.0	9.0	38.0	0.0	.	22	.	.	.	none	.	.	PASS	Atlas-SNP
JAKMIP1	152789	hgsc.bcm.edu	hg19	4	6066676	6066676	+	Silent	SNP	C	C	T	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	JAKMIP1	NM_001099433	exon9	c.G1362A	p.L454L	TTCGGACAACGTT	.	92.0	6.0	125.0	0.0	.	250	.	.	.	none	.	.	PASS	Atlas-SNP
BOD1L1	259282	hgsc.bcm.edu	hg19	4	13601157	13601157	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	.	NM_148894	exon10	c.T7367C	p.L2456P	TTTATGAGGTGTA	.	108.0	5.0	112.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
KIAA0825	285600	hgsc.bcm.edu	hg19	5	93856481	93856481	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	KIAA0825	NM_173665	exon5	c.T442G	p.S148A	CAACAGAATGAAG	.	60.0	15.0	55.0	0.0	.	172	.	.	.	none	.	.	PASS	Atlas-SNP
HSD17B4	3295	hgsc.bcm.edu	hg19	5	118824931	118824931	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	HSD17B4	NM_001199291	exon10	c.C742T	p.L248F	CTTGTCCTTTGGC	.	186.0	61.0	87.0	0.0	.	63	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF608	57507	hgsc.bcm.edu	hg19	5	123980011	123980011	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	ZNF608	NM_020747	exon5	c.C4049T	p.P1350L	GGGTAAGGATAAG	.	105.0	17.0	86.0	0.0	.	117	.	.	.	none	.	.	PASS	Atlas-SNP
GPR116	221395	hgsc.bcm.edu	hg19	6	46867766	46867766	+	Missense_Mutation	SNP	C	C	A	rs145334563	bycluster;byfrequency;alternate_allele	TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	GPR116	NM_015234	exon3	c.G157T	p.V53F	ACATACCGGCTCG	.	100.0	22.0	119.0	0.0	.	133	.	.	.	alt	C|0.999;T|0.001	.	PASS	Atlas-SNP
COL9A1	1297	hgsc.bcm.edu	hg19	6	70944522	70944522	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	COL9A1	NM_001851	exon34	c.G2234T	p.G745V	GGCAGGCCGGTGG	.	53.0	5.0	55.0	0.0	.	228	.	.	.	none	.	.	PASS	Atlas-SNP
PMS2	5395	hgsc.bcm.edu	hg19	7	6035170	6035170	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	PMS2	NM_000535	exon8	c.G898A	p.A300T	CCTTTGCTGGGTC	.	104.0	31.0	95.0	0.0	.	88	.	.	.	none	.	.	PASS	Atlas-SNP
POU6F2	11281	hgsc.bcm.edu	hg19	7	39446255	39446255	+	Silent	SNP	C	C	T	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	POU6F2	NM_007252	exon7	c.C942T	p.S314S	GAGCTCCATAGCA	.	99.0	31.0	103.0	0.0	.	117	.	.	.	none	.	.	PASS	Atlas-SNP
ZMIZ2	83637	hgsc.bcm.edu	hg19	7	44805818	44805818	+	Silent	SNP	C	C	G	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	ZMIZ2	NM_031449	exon17	c.C2298G	p.P766P	CACGCCCAGCACC	.	138.0	19.0	113.0	0.0	.	82	.	.	.	none	.	.	PASS	Atlas-SNP
ABCB4	5244	hgsc.bcm.edu	hg19	7	87051487	87051487	+	Silent	SNP	A	A	G	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	ABCB4	NM_018850	exon18	c.T2266C	p.L756L	AAATCAAAGAGAA	.	58.0	4.0	59.0	0.0	.	177	.	.	.	none	.	.	PASS	Atlas-SNP
CYP3A43	64816	hgsc.bcm.edu	hg19	7	99454477	99454477	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	CYP3A43	NM_057096	exon9	c.C820A	p.Q274K	TTTCAACAGATGA	.	188.0	18.0	215.0	0.0	.	52	.	.	.	none	.	.	PASS	Atlas-SNP
CPA4	51200	hgsc.bcm.edu	hg19	7	129962495	129962495	+	Silent	SNP	T	T	C	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	CPA4	NM_016352	exon11	c.T1245C	p.H415H	GGAGCATGTGCGG	.	188.0	39.0	159.0	0.0	.	47	.	.	.	none	.	.	PASS	Atlas-SNP
CPA4	51200	hgsc.bcm.edu	hg19	7	129962499	129962499	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	CPA4	NM_016352	exon11	c.C1249T	p.R417W	CATGTGCGGGACA	.	185.0	42.0	154.0	0.0	.	47	.	.	.	none	.	.	PASS	Atlas-SNP
AKR1B15	441282	hgsc.bcm.edu	hg19	7	134260620	134260620	+	Silent	SNP	C	C	T	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	AKR1B15	NM_001080538	exon8	c.C684T	p.C228C	GTACTGCCACTCC	.	105.0	20.0	129.0	0.0	.	105	.	.	.	none	.	.	PASS	Atlas-SNP
SVOPL	136306	hgsc.bcm.edu	hg19	7	138281232	138281232	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	SVOPL	NM_001139456	exon14	c.C1397T	p.S466L	ACAGATGAGAAGA	.	107.0	14.0	80.0	0.0	.	111	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF777	27153	hgsc.bcm.edu	hg19	7	149152518	149152518	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	ZNF777	NM_015694	exon2	c.T596A	p.L199Q	GCCTCCAGCTTCC	.	209.0	46.0	204.0	0.0	.	63	.	.	.	none	.	.	PASS	Atlas-SNP
TSNARE1	203062	hgsc.bcm.edu	hg19	8	143381927	143381927	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	TSNARE1	NM_145003	exon10	c.G1210C	p.E404Q	CCTGCTCCTGGCC	.	103.0	14.0	109.0	0.0	.	59	.	.	.	none	.	.	PASS	Atlas-SNP
TSTD2	158427	hgsc.bcm.edu	hg19	9	100368460	100368460	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	TSTD2,NS,carcinoma,0,1	TSTD2	NM_139246	exon7	c.C919A	p.L307I	CAAGAAGGATAGT	.	72.0	9.0	103.0	0.0	.	42	.	.	.	none	.	.	PASS	Atlas-SNP
HSPA5	3309	hgsc.bcm.edu	hg19	9	128001454	128001454	+	Silent	SNP	A	A	G	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	HSPA5	NM_005347	exon5	c.T762C	p.G254G	TTCTCCACCCAGA	.	52.0	7.0	68.0	0.0	.	41	.	.	.	none	.	.	PASS	Atlas-SNP
PKN3	29941	hgsc.bcm.edu	hg19	9	131476565	131476565	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	PKN3	NM_013355	exon11	c.C1402A	p.P468T	AGCTCCCCGAGCA	.	240.0	42.0	243.0	0.0	.	62	.	.	.	none	.	.	PASS	Atlas-SNP
ZER1	10444	hgsc.bcm.edu	hg19	9	131512978	131512978	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	ZER1	NM_006336	exon8	c.T1276C	p.Y426H	AGCGGTACTCGGA	.	100.0	16.0	82.0	0.0	.	49	.	.	.	none	.	.	PASS	Atlas-SNP
AKR1C3	8644	hgsc.bcm.edu	hg19	10	5139633	5139633	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	AKR1C3	NM_001253908	exon3	c.C260G	p.S87C	TTTGGTCCACTTT	.	134.0	28.0	137.0	0.0	.	21	.	.	.	none	.	.	PASS	Atlas-SNP
IL15RA	3601	hgsc.bcm.edu	hg19	10	6008174	6008174	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	IL15RA	NM_001256765	exon3	c.A475G	p.T159A	ACTCCGTCAGGCT	.	40.0	6.0	65.0	0.0	.	17	.	.	.	none	.	.	PASS	Atlas-SNP
VDAC2	7417	hgsc.bcm.edu	hg19	10	76980587	76980587	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	VDAC2	NM_001184783	exon8	c.C488T	p.A163V	GACCTGCAATCCA	.	129.0	20.0	165.0	0.0	.	27	.	.	.	none	.	.	PASS	Atlas-SNP
BTAF1	9044	hgsc.bcm.edu	hg19	10	93773747	93773747	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	BTAF1	NM_003972	exon32	c.A4545T	p.K1515N	ACCTAAAATTATT	.	184.0	23.0	262.0	0.0	.	148	.	.	.	none	.	.	PASS	Atlas-SNP
PSD	5662	hgsc.bcm.edu	hg19	10	104176443	104176443	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	PSD	NM_001270965	exon3	c.C353G	p.P118R	GGAGCAGGTAGCC	.	81.0	17.0	90.0	0.0	.	164	.	.	.	none	.	.	PASS	Atlas-SNP
BRSK2	9024	hgsc.bcm.edu	hg19	11	1459605	1459605	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	BRSK2	NM_001256630	exon3	c.G394A	p.E132K	GTTTATGAAAACA	.	127.0	15.0	136.0	0.0	.	97	.	.	.	none	.	.	PASS	Atlas-SNP
FBXO3	26273	hgsc.bcm.edu	hg19	11	33770334	33770334	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	FBXO3	NM_012175	exon9	c.C1037A	p.P346H	ACTCCAGGTCCTT	.	79.0	17.0	103.0	0.0	.	37	.	.	.	none	.	.	PASS	Atlas-SNP
USP5	8078	hgsc.bcm.edu	hg19	12	6968684	6968684	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	USP5	NM_003481	exon9	c.C1109T	p.T370I	ACCCTACCCAGGA	.	116.0	27.0	124.0	0.0	.	124	.	.	.	none	.	.	PASS	Atlas-SNP
CGRRF1	10668	hgsc.bcm.edu	hg19	14	55005042	55005042	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	CGRRF1	NM_006568	exon6	c.G940C	p.E314Q	GTTCAGGAATCTT	.	89.0	4.0	82.0	0.0	.	30	.	.	.	none	.	.	PASS	Atlas-SNP
CLMN	79789	hgsc.bcm.edu	hg19	14	95670344	95670344	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	CLMN	NM_024734	exon9	c.G1342A	p.G448R	GGCTCCCTTCAAA	.	102.0	22.0	109.0	0.0	.	103	.	.	.	none	.	.	PASS	Atlas-SNP
SPTBN5	51332	hgsc.bcm.edu	hg19	15	42149779	42149779	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	SPTBN5	NM_016642	exon50	c.G8251C	p.A2751P	CACAGGCCTTCTG	.	23.0	8.0	21.0	0.0	.	171	.	.	.	none	.	.	PASS	Atlas-SNP
SALL1	6299	hgsc.bcm.edu	hg19	16	51172851	51172851	+	Silent	SNP	A	A	G	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	SALL1	NM_002968	exon2	c.T3282C	p.H1094H	AGAAACATGCACG	.	123.0	18.0	96.0	0.0	.	301	.	.	.	none	.	.	PASS	Atlas-SNP
FAM65A	79567	hgsc.bcm.edu	hg19	16	67577079	67577079	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	FAM65A	NM_001193523	exon13	c.T2450A	p.L817Q	GGGCCCTAATGGC	.	40.0	14.0	39.0	0.0	.	104	.	.	.	none	.	.	PASS	Atlas-SNP
ZFHX3	463	hgsc.bcm.edu	hg19	16	72821615	72821615	+	Silent	SNP	G	G	A	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	ZFHX3,NS,carcinoma,0,1	ZFHX3	NM_006885	exon10	c.C10560T	p.G3520G	GCCGCCGCCACCG	.	70.0	7.0	53.0	1.0	.	404	.	.	.	none	.	.	PASS	Atlas-SNP
ZZEF1	23140	hgsc.bcm.edu	hg19	17	3919676	3919676	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	ZZEF1	NM_015113	exon49	c.G8086T	p.G2696X	CCATTCCTGGCTC	.	162.0	39.0	154.0	0.0	.	195	.	.	.	none	.	.	PASS	Atlas-SNP
ZFP3	124961	hgsc.bcm.edu	hg19	17	4995909	4995909	+	Silent	SNP	T	T	C	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	ZFP3	NM_153018	exon2	c.T1110C	p.C370C	GGAATGTGGGAAG	.	72.0	4.0	85.0	0.0	.	54	.	.	.	none	.	.	PASS	Atlas-SNP
WIPF2	147179	hgsc.bcm.edu	hg19	17	38420806	38420806	+	Silent	SNP	A	A	G	rs139121244		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	WIPF2	NM_133264	exon5	c.A378G	p.P126P	GCCTCCAGTATCT	.	151.0	35.0	168.0	0.0	.	55	.	.	.	weak	A|1.000;G|0.000	0.000	PASS	Atlas-SNP
KRT37	8688	hgsc.bcm.edu	hg19	17	39577782	39577782	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	KRT37	NM_003770	exon6	c.G1078C	p.A360P	TCTGGGCCAGCTC	.	101.0	13.0	89.0	0.0	.	61	.	.	.	none	.	.	PASS	Atlas-SNP
MED13	9969	hgsc.bcm.edu	hg19	17	60023946	60023946	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	MED13	NM_005121	exon30	c.G6408C	p.Q2136H	ATTGTACTGTTCC	.	77.0	24.0	49.0	0.0	.	181	.	.	.	none	.	.	PASS	Atlas-SNP
RNF157	114804	hgsc.bcm.edu	hg19	17	74163165	74163165	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	RNF157	NM_052916	exon5	c.G486T	p.Q162H	CTTGTACTGCACA	.	219.0	29.0	215.0	0.0	.	66	.	.	.	none	.	.	PASS	Atlas-SNP
BIRC5	332	hgsc.bcm.edu	hg19	17	76212806	76212806	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	BIRC5	NM_001012271	exon4	c.G352A	p.E118K	TTTGAAGAATTAA	.	117.0	29.0	126.0	0.0	.	32	.	.	.	none	.	.	PASS	Atlas-SNP
APCDD1	147495	hgsc.bcm.edu	hg19	18	10471914	10471914	+	Silent	SNP	G	G	A	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	APCDD1	NM_153000	exon3	c.G630A	p.Q210Q	ACTTCAGCTCATC	.	219.0	38.0	271.0	0.0	.	57	.	.	.	none	.	.	PASS	Atlas-SNP
CEP192	55125	hgsc.bcm.edu	hg19	18	13071144	13071144	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	CEP192	NM_032142	exon28	c.G5281T	p.D1761Y	TGCTTAGATATTC	.	61.0	14.0	56.0	0.0	.	340	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF519	162655	hgsc.bcm.edu	hg19	18	14105675	14105675	+	Silent	SNP	T	T	C	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	ZNF519	NM_145287	exon3	c.A864G	p.G288G	TTTCTCTCCAGTA	.	83.0	18.0	78.0	0.0	.	53	.	.	.	none	.	.	PASS	Atlas-SNP
LAMA3	3909	hgsc.bcm.edu	hg19	18	21451430	21451430	+	Silent	SNP	G	G	T	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	LAMA3	NM_001127717	exon38	c.G4803T	p.V1601V	CCCAGTGTCTAGG	.	85.0	14.0	112.0	0.0	.	397	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF521	25925	hgsc.bcm.edu	hg19	18	22805629	22805629	+	Silent	SNP	G	G	C	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	ZNF521	NM_015461	exon4	c.C2253G	p.V751V	CCTATAGACTTTC	.	83.0	16.0	79.0	0.0	.	269	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF844	284391	hgsc.bcm.edu	hg19	19	12187475	12187475	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	ZNF844,NS,carcinoma,0,6	ZNF844	NM_001136501	exon4	c.C1540G	p.H514D	CCTTCACATCTGC	.	70.0	6.0	68.0	0.0	.	69	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF844	284391	hgsc.bcm.edu	hg19	19	12187502	12187502	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	ZNF844,bladder,carcinoma,0,3	ZNF844	NM_001136501	exon4	c.A1567G	p.K523E	TGCATGAAAGGAC	.	44.0	6.0	45.0	0.0	.	69	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF430	80264	hgsc.bcm.edu	hg19	19	21240780	21240780	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	ZNF430	NM_025189	exon5	c.C1666G	p.L556V	TCAAACCTTATTG	.	39.0	10.0	49.0	0.0	.	59	.	.	.	none	.	.	PASS	Atlas-SNP
DPY19L3	147991	hgsc.bcm.edu	hg19	19	32930113	32930113	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	DPY19L3	NM_001172774	exon7	c.T692G	p.L231R	ATTTCCTGAGACC	.	80.0	15.0	124.0	0.0	.	70	.	.	.	none	.	.	PASS	Atlas-SNP
ATP1A3	478	hgsc.bcm.edu	hg19	19	42485703	42485703	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	ATP1A3	NM_001256214	exon11	c.G1427T	p.R476L	TTGTTGCGTTCAC	.	76.0	4.0	111.0	0.0	.	117	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF473	25888	hgsc.bcm.edu	hg19	19	50550199	50550199	+	Silent	SNP	G	G	T	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	ZNF473	NM_015428	exon5	c.G2499T	p.L833L	GCACCTGAGAGTT	.	79.0	18.0	77.0	0.0	.	86	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF28	7576	hgsc.bcm.edu	hg19	19	53303801	53303801	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	ZNF28_ENST00000457749,NS,carcinoma,0,3	ZNF28	NM_006969	exon4	c.C1297G	p.H433D	CAGTGTGAATTAT	.	200.0	30.0	289.0	0.0	.	191	.	.	.	none	.	.	PASS	Atlas-SNP
FCAR	2204	hgsc.bcm.edu	hg19	19	55401195	55401195	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	FCAR	NM_002000	exon5	c.T830G	p.L277W	CAGGATTGACCTT	.	233.0	36.0	209.0	0.0	.	110	.	.	.	none	.	.	PASS	Atlas-SNP
FCAR	2204	hgsc.bcm.edu	hg19	19	55401196	55401196	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	FCAR,NS,malignant_melanoma,0,2	FCAR	NM_002000	exon5	c.G831T	p.L277F	AGGATTGACCTTT	.	228.0	36.0	207.0	0.0	.	110	.	.	.	none	.	.	PASS	Atlas-SNP
HIRA	7290	hgsc.bcm.edu	hg19	22	19393327	19393327	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	HIRA	NM_003325	exon5	c.C379A	p.L127I	TCCGGAGGATAGA	.	97.0	4.0	63.0	0.0	.	100	.	.	.	none	.	.	PASS	Atlas-SNP
PAK3	5063	hgsc.bcm.edu	hg19	X	110366494	110366494	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	PAK3	NM_001128166	exon3	c.G163A	p.G55R	CCAGGAGGAGGGG	.	47.0	15.0	50.0	0.0	.	179	.	.	.	none	.	.	PASS	Atlas-SNP
GPR98	84059	hgsc.bcm.edu	hg19	5	89953910	89953915	+	In_Frame_Del	DEL	AAATCA	AAATCA	-	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	AAATCA	AAATCA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	GPR98	NM_032119	exon21	c.4566_4571del	p.1522_1524del	.	.	126.0	30.0	124.0	0.0	.	605	.	0.238095	0	none	.	.	PASS	Atlas-INDEL
DMTF1	9988	hgsc.bcm.edu	hg19	7	86808890	86808890	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	DMTF1	NM_021145	exon10	c.548delT	p.I183fs	.	.	51.0	10.0	39.0	0.0	.	48	.	0.196078	0	none	.	.	PASS	Atlas-INDEL
WDR47	22911	hgsc.bcm.edu	hg19	1	109554105	109554105	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	WDR47	NM_001142550	exon5	c.585delG	p.K195fs	.	.	342.0	55.0	435.0	0.0	.	56	.	0.160819	0	none	.	.	PASS	Atlas-INDEL
SLC31A1	1317	hgsc.bcm.edu	hg19	9	116018468	116018469	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	SLC31A1	NM_001859	exon2	c.40_41insC	p.S14fs	.	.	118.0	18.0	134.0	0.0	.	12	.	0.152542	0	none	.	.	PASS	Atlas-INDEL
C16orf92	146378	hgsc.bcm.edu	hg19	16	30035201	30035219	+	Frame_Shift_Del	DEL	ACTCAGGTATGAACCAGCT	ACTCAGGTATGAACCAGCT	-	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	ACTCAGGTATGAACCAGCT	ACTCAGGTATGAACCAGCT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	C16orf92	NM_001109660	exon2	c.283_289del	p.95_97del	.	.	62.0	10.0	81.0	0.0	.	11	.	0.16129	0	none	.	.	PASS	Atlas-INDEL
OR1N2	138882	hgsc.bcm.edu	hg19	9	125316283	125316283	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	OR1N2	NM_001004457	exon1	c.834delT	p.L278fs	.	.	140.0	21.0	115.0	0.0	.	51	.	0.15	0	none	.	.	PASS	Atlas-INDEL
WIPF2	147179	hgsc.bcm.edu	hg19	17	38420795	38420800	+	In_Frame_Del	DEL	CCAAGG	CCAAGG	-	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	CCAAGG	CCAAGG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	WIPF2	NM_133264	exon5	c.366_371del	p.122_124del	.	.	141.0	24.0	163.0	0.0	.	55	.	0.170213	0	none	.	.	PASS	Atlas-INDEL