Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq TVarRat NVarRat dbSNP_Strength dbSNP_AF dbSNP_PopFreq Confidence Algorithm PEF1 553115 hgsc.bcm.edu hg19 1 32100955 32100955 + Nonsense_Mutation SNP C C A novel TCGA-DW-7834-01A-11D-2136-08 TCGA-DW-7834-10A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7f7db203-247b-49e1-a80e-c8be4047bc17 1354f438-e892-40c1-84b6-cd15f786a963 . PEF1 NM_012392 exon2 c.G193T p.G65X GGTGTCCATAGGG . 51.0 18.0 45.0 0.0 . 20 . . . none . . PASS Atlas-SNP DEDD 9191 hgsc.bcm.edu hg19 1 161092019 161092019 + Missense_Mutation SNP A A C novel TCGA-DW-7834-01A-11D-2136-08 TCGA-DW-7834-10A-01D-2136-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7f7db203-247b-49e1-a80e-c8be4047bc17 1354f438-e892-40c1-84b6-cd15f786a963 . DEDD NM_001039711 exon5 c.T875G p.L292R ACCAGCAGCTTGA . 95.0 32.0 95.0 0.0 . 22 . . . none . . PASS Atlas-SNP RGS1 5996 hgsc.bcm.edu hg19 1 192547354 192547354 + Missense_Mutation SNP G G C novel TCGA-DW-7834-01A-11D-2136-08 TCGA-DW-7834-10A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7f7db203-247b-49e1-a80e-c8be4047bc17 1354f438-e892-40c1-84b6-cd15f786a963 . RGS1 NM_002922 exon4 c.G283C p.G95R TTAGCTGGTCAAA . 151.0 40.0 187.0 0.0 . 75 . . . none . . PASS Atlas-SNP PLXNA2 5362 hgsc.bcm.edu hg19 1 208215581 208215581 + Missense_Mutation SNP C C T novel TCGA-DW-7834-01A-11D-2136-08 TCGA-DW-7834-10A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7f7db203-247b-49e1-a80e-c8be4047bc17 1354f438-e892-40c1-84b6-cd15f786a963 . PLXNA2 NM_025179 exon22 c.G4148A p.R1383Q TTGCCCCGGTCGC . 91.0 30.0 91.0 0.0 . 178 . . . none . . PASS Atlas-SNP NUP133 55746 hgsc.bcm.edu hg19 1 229631732 229631732 + Silent SNP G G T novel TCGA-DW-7834-01A-11D-2136-08 TCGA-DW-7834-10A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7f7db203-247b-49e1-a80e-c8be4047bc17 1354f438-e892-40c1-84b6-cd15f786a963 . NUP133 NM_018230 exon7 c.C882A p.I294I TTTACTGATGTTT . 74.0 31.0 65.0 0.0 . 111 . . . none . . PASS Atlas-SNP LPIN1 23175 hgsc.bcm.edu hg19 2 11913751 11913751 + Missense_Mutation SNP T T C novel TCGA-DW-7834-01A-11D-2136-08 TCGA-DW-7834-10A-01D-2136-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7f7db203-247b-49e1-a80e-c8be4047bc17 1354f438-e892-40c1-84b6-cd15f786a963 . LPIN1 NM_001261428 exon6 c.T749C p.L250P GAACTCTTCCTAA . 113.0 35.0 127.0 0.0 . 99 . . . none . . PASS Atlas-SNP IFIH1 64135 hgsc.bcm.edu hg19 2 163167397 163167397 + Missense_Mutation SNP A A G novel TCGA-DW-7834-01A-11D-2136-08 TCGA-DW-7834-10A-01D-2136-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7f7db203-247b-49e1-a80e-c8be4047bc17 1354f438-e892-40c1-84b6-cd15f786a963 . IFIH1 NM_022168 exon2 c.T500C p.L167P TTTAGTAGCTCTC . 54.0 15.0 55.0 0.0 . 102 . . . none . . PASS Atlas-SNP NABP1 64859 hgsc.bcm.edu hg19 2 192543405 192543405 + Missense_Mutation SNP A A C novel TCGA-DW-7834-01A-11D-2136-08 TCGA-DW-7834-10A-01D-2136-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7f7db203-247b-49e1-a80e-c8be4047bc17 1354f438-e892-40c1-84b6-cd15f786a963 . . NM_001031716 exon1 c.A65C p.N22T ACTTAAATGTCGT . 100.0 32.0 113.0 0.0 . . . . . none . . PASS Atlas-SNP SF3B1 23451 hgsc.bcm.edu hg19 2 198274598 198274598 + Missense_Mutation SNP G G T rs1044635 alternate_allele TCGA-DW-7834-01A-11D-2136-08 TCGA-DW-7834-10A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7f7db203-247b-49e1-a80e-c8be4047bc17 1354f438-e892-40c1-84b6-cd15f786a963 . SF3B1 NM_012433 exon7 c.C800A p.T267N CCAGGAGTAGCAG . 222.0 78.0 197.0 0.0 . 1038 . . . alt G|1.000;A|0.000 . PASS Atlas-SNP DNAJB2 3300 hgsc.bcm.edu hg19 2 220150708 220150708 + Splice_Site SNP G G T novel TCGA-DW-7834-01A-11D-2136-08 TCGA-DW-7834-10A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7f7db203-247b-49e1-a80e-c8be4047bc17 1354f438-e892-40c1-84b6-cd15f786a963 . DNAJB2 NM_001039550 exon10 c.824-1G>T . TCCCCAGATGTGT . 67.0 4.0 69.0 0.0 . 31 . . . none . . PASS Atlas-SNP DDX60 55601 hgsc.bcm.edu hg19 4 169172121 169172121 + Missense_Mutation SNP C C T novel TCGA-DW-7834-01A-11D-2136-08 TCGA-DW-7834-10A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7f7db203-247b-49e1-a80e-c8be4047bc17 1354f438-e892-40c1-84b6-cd15f786a963 . DDX60 NM_017631 exon28 c.G3842A p.R1281K CCTTTTCTAAAGA . 64.0 16.0 53.0 0.0 . 304 . . . none . . PASS Atlas-SNP PALLD 23022 hgsc.bcm.edu hg19 4 169433375 169433375 + Silent SNP G G A novel TCGA-DW-7834-01A-11D-2136-08 TCGA-DW-7834-10A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7f7db203-247b-49e1-a80e-c8be4047bc17 1354f438-e892-40c1-84b6-cd15f786a963 . PALLD NM_001166108 exon2 c.G720A p.R240R GGCCAGGCATTGC . 121.0 5.0 119.0 0.0 . 179 . . . none . . PASS Atlas-SNP WWC2 80014 hgsc.bcm.edu hg19 4 184166688 184166688 + Missense_Mutation SNP A A C novel TCGA-DW-7834-01A-11D-2136-08 TCGA-DW-7834-10A-01D-2136-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7f7db203-247b-49e1-a80e-c8be4047bc17 1354f438-e892-40c1-84b6-cd15f786a963 . WWC2 NM_024949 exon6 c.A722C p.D241A AACAAGATCTGAT . 50.0 14.0 54.0 0.0 . 78 . . . none . . PASS Atlas-SNP PDZD2 23037 hgsc.bcm.edu hg19 5 32074625 32074625 + Missense_Mutation SNP G G T novel TCGA-DW-7834-01A-11D-2136-08 TCGA-DW-7834-10A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7f7db203-247b-49e1-a80e-c8be4047bc17 1354f438-e892-40c1-84b6-cd15f786a963 . PDZD2 NM_178140 exon17 c.G3413T p.S1138I AGCCCAGTGGCTC . 49.0 19.0 64.0 0.0 . 306 . . . none . . PASS Atlas-SNP FCHO2 115548 hgsc.bcm.edu hg19 5 72383545 72383545 + Missense_Mutation SNP A A G novel TCGA-DW-7834-01A-11D-2136-08 TCGA-DW-7834-10A-01D-2136-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7f7db203-247b-49e1-a80e-c8be4047bc17 1354f438-e892-40c1-84b6-cd15f786a963 . FCHO2 NM_138782 exon25 c.A2375G p.Y792C CTGGCTATAGGCT . 229.0 61.0 213.0 0.0 . 96 . . . none . . PASS Atlas-SNP VCAN 1462 hgsc.bcm.edu hg19 5 82785943 82785943 + Missense_Mutation SNP A A T novel TCGA-DW-7834-01A-11D-2136-08 TCGA-DW-7834-10A-01D-2136-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7f7db203-247b-49e1-a80e-c8be4047bc17 1354f438-e892-40c1-84b6-cd15f786a963 . VCAN NM_004385 exon3 c.A97T p.R33W CCGGTGAGGGGCT . 115.0 32.0 102.0 0.0 . 498 . . . none . . PASS Atlas-SNP VARS2 57176 hgsc.bcm.edu hg19 6 30888201 30888201 + Missense_Mutation SNP T T C novel TCGA-DW-7834-01A-11D-2136-08 TCGA-DW-7834-10A-01D-2136-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7f7db203-247b-49e1-a80e-c8be4047bc17 1354f438-e892-40c1-84b6-cd15f786a963 . VARS2 NM_001167734 exon14 c.T1475C p.L492P TGGTACTGCCCAT . 61.0 19.0 48.0 0.0 . 60 . . . none . . PASS Atlas-SNP ZNF76 7629 hgsc.bcm.edu hg19 6 35260658 35260658 + Missense_Mutation SNP C C T novel TCGA-DW-7834-01A-11D-2136-08 TCGA-DW-7834-10A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7f7db203-247b-49e1-a80e-c8be4047bc17 1354f438-e892-40c1-84b6-cd15f786a963 . ZNF76 NM_003427 exon11 c.C1166T p.A389V TCCCAGCCGCCTC . 148.0 45.0 129.0 0.0 . 37 . . . none . . PASS Atlas-SNP DNAH8 1769 hgsc.bcm.edu hg19 6 38709565 38709565 + Missense_Mutation SNP A A G novel TCGA-DW-7834-01A-11D-2136-08 TCGA-DW-7834-10A-01D-2136-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7f7db203-247b-49e1-a80e-c8be4047bc17 1354f438-e892-40c1-84b6-cd15f786a963 . DNAH8 NM_001206927 exon8 c.A1195G p.M399V AAACGCATGTCAG . 77.0 27.0 83.0 0.0 . 1239 . . . none . . PASS Atlas-SNP BAI3 577 hgsc.bcm.edu hg19 6 69943243 69943243 + Missense_Mutation SNP C C T novel TCGA-DW-7834-01A-11D-2136-08 TCGA-DW-7834-10A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7f7db203-247b-49e1-a80e-c8be4047bc17 1354f438-e892-40c1-84b6-cd15f786a963 . BAI3 NM_001704 exon18 c.C2542T p.H848Y GCATCCCATACGA . 215.0 68.0 266.0 0.0 . 451 . . . none . . PASS Atlas-SNP RFX6 222546 hgsc.bcm.edu hg19 6 117245902 117245902 + Missense_Mutation SNP T T A novel TCGA-DW-7834-01A-11D-2136-08 TCGA-DW-7834-10A-01D-2136-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7f7db203-247b-49e1-a80e-c8be4047bc17 1354f438-e892-40c1-84b6-cd15f786a963 . RFX6 NM_173560 exon15 c.T1626A p.N542K TAATAATGACAAA . 92.0 20.0 97.0 0.0 . 141 . . . none . . PASS Atlas-SNP AEBP1 165 hgsc.bcm.edu hg19 7 44152208 44152208 + Missense_Mutation SNP G G C novel TCGA-DW-7834-01A-11D-2136-08 TCGA-DW-7834-10A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7f7db203-247b-49e1-a80e-c8be4047bc17 1354f438-e892-40c1-84b6-cd15f786a963 . AEBP1 NM_001129 exon18 c.G2269C p.V757L CCCTTCGTGCTGG . 151.0 40.0 117.0 0.0 . 102 . . . none . . PASS Atlas-SNP OGDH 4967 hgsc.bcm.edu hg19 7 44714122 44714122 + Missense_Mutation SNP G G A novel TCGA-DW-7834-01A-11D-2136-08 TCGA-DW-7834-10A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7f7db203-247b-49e1-a80e-c8be4047bc17 1354f438-e892-40c1-84b6-cd15f786a963 . OGDH NM_002541 exon7 c.G901A p.G301S GAGAATGGCGTGG . 126.0 55.0 104.0 0.0 . 145 . . . none . . PASS Atlas-SNP VSTM2A 222008 hgsc.bcm.edu hg19 7 54617692 54617692 + Missense_Mutation SNP C C T novel TCGA-DW-7834-01A-11D-2136-08 TCGA-DW-7834-10A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7f7db203-247b-49e1-a80e-c8be4047bc17 1354f438-e892-40c1-84b6-cd15f786a963 VSTM2A,NS,carcinoma,0,2 VSTM2A NM_182546 exon4 c.C463T p.R155C CATGCCCGCAGAA . 32.0 13.0 30.0 0.0 . 53 . . . none . . PASS Atlas-SNP C7orf55-LUC7L2 100996928 hgsc.bcm.edu hg19 7 139107032 139107032 + Missense_Mutation SNP T T A novel TCGA-DW-7834-01A-11D-2136-08 TCGA-DW-7834-10A-01D-2136-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7f7db203-247b-49e1-a80e-c8be4047bc17 1354f438-e892-40c1-84b6-cd15f786a963 . . NM_001244584 exon11 c.T1323A p.N441K TGCTAATGGCAGA . 200.0 102.0 170.0 0.0 . . . . . none . . PASS Atlas-SNP PRSS55 203074 hgsc.bcm.edu hg19 8 10390473 10390473 + Nonsense_Mutation SNP G G A rs150767306 alternate_allele TCGA-DW-7834-01A-11D-2136-08 TCGA-DW-7834-10A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7f7db203-247b-49e1-a80e-c8be4047bc17 1354f438-e892-40c1-84b6-cd15f786a963 . PRSS55 NM_001197020 exon4 c.G656A p.W219X TGGACTGGGAGGA . 95.0 34.0 109.0 0.0 . 67 . . . alt G|1.000;T|0.000 . PASS Atlas-SNP NUGGC 389643 hgsc.bcm.edu hg19 8 27888815 27888815 + Missense_Mutation SNP C C G novel TCGA-DW-7834-01A-11D-2136-08 TCGA-DW-7834-10A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7f7db203-247b-49e1-a80e-c8be4047bc17 1354f438-e892-40c1-84b6-cd15f786a963 . . NM_001010906 exon15 c.G1853C p.G618A CTTATCCCAATTT . 192.0 49.0 202.0 0.0 . . . . . none . . PASS Atlas-SNP NR5A1 2516 hgsc.bcm.edu hg19 9 127262609 127262609 + Silent SNP C C A novel TCGA-DW-7834-01A-11D-2136-08 TCGA-DW-7834-10A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7f7db203-247b-49e1-a80e-c8be4047bc17 1354f438-e892-40c1-84b6-cd15f786a963 NR5A1,colon,carcinoma,0,1 NR5A1 NM_004959 exon4 c.G630T p.P210P GCCGTACGGCAGC . 9.0 5.0 6.0 2.0 . 32 . . . none . . PASS Atlas-SNP KIF20B 9585 hgsc.bcm.edu hg19 10 91498338 91498338 + Missense_Mutation SNP A A C novel TCGA-DW-7834-01A-11D-2136-08 TCGA-DW-7834-10A-01D-2136-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7f7db203-247b-49e1-a80e-c8be4047bc17 1354f438-e892-40c1-84b6-cd15f786a963 . KIF20B NM_016195 exon20 c.A3620C p.E1207A TAAAAGAAGAAGA . 59.0 23.0 46.0 0.0 . 191 . . . none . . PASS Atlas-SNP TRIM8 81603 hgsc.bcm.edu hg19 10 104404881 104404881 + Silent SNP C C T novel TCGA-DW-7834-01A-11D-2136-08 TCGA-DW-7834-10A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7f7db203-247b-49e1-a80e-c8be4047bc17 1354f438-e892-40c1-84b6-cd15f786a963 . TRIM8 NM_030912 exon1 c.C507T p.Y169Y CTGCTACTACAGC . 46.0 9.0 42.0 0.0 . 35 . . . none . . PASS Atlas-SNP PTPRJ 5795 hgsc.bcm.edu hg19 11 48149503 48149503 + Missense_Mutation SNP C C T novel TCGA-DW-7834-01A-11D-2136-08 TCGA-DW-7834-10A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7f7db203-247b-49e1-a80e-c8be4047bc17 1354f438-e892-40c1-84b6-cd15f786a963 . PTPRJ NM_001098503 exon7 c.C1265T p.P422L TCATCCCCGGACT . 124.0 42.0 116.0 0.0 . 225 . . . none . . PASS Atlas-SNP NAALADL1 10004 hgsc.bcm.edu hg19 11 64822081 64822081 + Missense_Mutation SNP C C T novel TCGA-DW-7834-01A-11D-2136-08 TCGA-DW-7834-10A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7f7db203-247b-49e1-a80e-c8be4047bc17 1354f438-e892-40c1-84b6-cd15f786a963 . NAALADL1 NM_005468 exon5 c.G733A p.E245K CTCGCTCCACTCC . 35.0 8.0 39.0 0.0 . 58 . . . none . . PASS Atlas-SNP PZP 5858 hgsc.bcm.edu hg19 12 9356427 9356427 + Missense_Mutation SNP T T A novel TCGA-DW-7834-01A-11D-2136-08 TCGA-DW-7834-10A-01D-2136-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7f7db203-247b-49e1-a80e-c8be4047bc17 1354f438-e892-40c1-84b6-cd15f786a963 . PZP NM_002864 exon2 c.A204T p.E68D CCTGTTTTCCCTG . 154.0 51.0 141.0 0.0 . 422 . . . none . . PASS Atlas-SNP DNAJC22 79962 hgsc.bcm.edu hg19 12 49743366 49743366 + Silent SNP T T C novel TCGA-DW-7834-01A-11D-2136-08 TCGA-DW-7834-10A-01D-2136-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7f7db203-247b-49e1-a80e-c8be4047bc17 1354f438-e892-40c1-84b6-cd15f786a963 . DNAJC22 NM_024902 exon2 c.T711C p.L237L CCTCCTTCTGCCT . 277.0 87.0 307.0 0.0 . 29 . . . none . . PASS Atlas-SNP GPR18 2841 hgsc.bcm.edu hg19 13 99908051 99908051 + Missense_Mutation SNP G G C novel TCGA-DW-7834-01A-11D-2136-08 TCGA-DW-7834-10A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7f7db203-247b-49e1-a80e-c8be4047bc17 1354f438-e892-40c1-84b6-cd15f786a963 GPR18,NS,carcinoma,0,1 GPR18 NM_001098200 exon2 c.C76G p.L26V AGACAAGGGCTGC . 140.0 31.0 142.0 0.0 . 23 . . . none . . PASS Atlas-SNP SLC7A8 23428 hgsc.bcm.edu hg19 14 23607203 23607203 + Missense_Mutation SNP C C T novel TCGA-DW-7834-01A-11D-2136-08 TCGA-DW-7834-10A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7f7db203-247b-49e1-a80e-c8be4047bc17 1354f438-e892-40c1-84b6-cd15f786a963 . SLC7A8 NM_012244 exon7 c.G943A p.A315T TCCAGGCCATGAC . 113.0 26.0 119.0 0.0 . 54 . . . none . . PASS Atlas-SNP PPP1R36 145376 hgsc.bcm.edu hg19 14 65032084 65032084 + Missense_Mutation SNP T T A novel TCGA-DW-7834-01A-11D-2136-08 TCGA-DW-7834-10A-01D-2136-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7f7db203-247b-49e1-a80e-c8be4047bc17 1354f438-e892-40c1-84b6-cd15f786a963 . . NM_172365 exon5 c.T279A p.D93E GACAGATAAAAGA . 37.0 13.0 64.0 0.0 . . . . . none . . PASS Atlas-SNP EIF2S1 1965 hgsc.bcm.edu hg19 14 67848335 67848335 + Silent SNP T T C novel TCGA-DW-7834-01A-11D-2136-08 TCGA-DW-7834-10A-01D-2136-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7f7db203-247b-49e1-a80e-c8be4047bc17 1354f438-e892-40c1-84b6-cd15f786a963 . EIF2S1 NM_004094 exon6 c.T606C p.Y202Y TGGTTATGAAGGC . 166.0 58.0 117.0 0.0 . 17 . . . none . . PASS Atlas-SNP TBC1D2B 23102 hgsc.bcm.edu hg19 15 78290654 78290654 + Missense_Mutation SNP G G C novel TCGA-DW-7834-01A-11D-2136-08 TCGA-DW-7834-10A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7f7db203-247b-49e1-a80e-c8be4047bc17 1354f438-e892-40c1-84b6-cd15f786a963 TBC1D2B_ENST00000300584,NS,carcinoma,0,3 TBC1D2B NM_144572 exon13 c.C2740G p.L914V GGCGTAGGGGGAA . 15.0 6.0 13.0 0.0 . 104 . . . none . . PASS Atlas-SNP KIAA0556 23247 hgsc.bcm.edu hg19 16 27720066 27720066 + Missense_Mutation SNP T T C novel TCGA-DW-7834-01A-11D-2136-08 TCGA-DW-7834-10A-01D-2136-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7f7db203-247b-49e1-a80e-c8be4047bc17 1354f438-e892-40c1-84b6-cd15f786a963 . KIAA0556 NM_015202 exon13 c.T1430C p.I477T ATGCCATCTACGT . 139.0 28.0 110.0 0.0 . 348 . . . none . . PASS Atlas-SNP TOP3A 7156 hgsc.bcm.edu hg19 17 18212208 18212208 + Silent SNP A A G novel TCGA-DW-7834-01A-11D-2136-08 TCGA-DW-7834-10A-01D-2136-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7f7db203-247b-49e1-a80e-c8be4047bc17 1354f438-e892-40c1-84b6-cd15f786a963 . TOP3A NM_004618 exon2 c.T228C p.H76H ATACAGATGATAA . 46.0 15.0 35.0 0.0 . 85 . . . none . . PASS Atlas-SNP EFTUD2 9343 hgsc.bcm.edu hg19 17 42945230 42945230 + Missense_Mutation SNP G G A novel TCGA-DW-7834-01A-11D-2136-08 TCGA-DW-7834-10A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7f7db203-247b-49e1-a80e-c8be4047bc17 1354f438-e892-40c1-84b6-cd15f786a963 . EFTUD2 NM_004247 exon13 c.C1094T p.S365F CTCTGGGAGCTGC . 29.0 17.0 20.0 0.0 . 85 . . . none . . PASS Atlas-SNP WNT3 7473 hgsc.bcm.edu hg19 17 44845986 44845986 + Silent SNP C C T novel TCGA-DW-7834-01A-11D-2136-08 TCGA-DW-7834-10A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7f7db203-247b-49e1-a80e-c8be4047bc17 1354f438-e892-40c1-84b6-cd15f786a963 . WNT3 NM_030753 exon4 c.A768A p.G256G GGTCTCCACCCAG . 174.0 79.0 146.0 0.0 . 34 . . . none . . PASS Atlas-SNP RNF213 57674 hgsc.bcm.edu hg19 17 78321576 78321576 + Silent SNP C C T novel TCGA-DW-7834-01A-11D-2136-08 TCGA-DW-7834-10A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7f7db203-247b-49e1-a80e-c8be4047bc17 1354f438-e892-40c1-84b6-cd15f786a963 . RNF213 NM_001256071 exon29 c.C9441T p.R3147R CTTCCGCCTGATT . 88.0 6.0 79.0 0.0 . 766 . . . none . . PASS Atlas-SNP AP3D1 8943 hgsc.bcm.edu hg19 19 2151253 2151253 + Missense_Mutation SNP G G C novel TCGA-DW-7834-01A-11D-2136-08 TCGA-DW-7834-10A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7f7db203-247b-49e1-a80e-c8be4047bc17 1354f438-e892-40c1-84b6-cd15f786a963 . AP3D1 NM_001261826 exon1 c.C81G p.N27K CTTGTGGTTACGG . 34.0 16.0 29.0 0.0 . 81 . . . none . . PASS Atlas-SNP PSMC4 5704 hgsc.bcm.edu hg19 19 40478461 40478461 + Silent SNP A A G novel TCGA-DW-7834-01A-11D-2136-08 TCGA-DW-7834-10A-01D-2136-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7f7db203-247b-49e1-a80e-c8be4047bc17 1354f438-e892-40c1-84b6-cd15f786a963 . PSMC4 NM_006503 exon3 c.A321G p.T107T TACCACAGGTGTG . 46.0 11.0 30.0 0.0 . 48 . . . none . . PASS Atlas-SNP MEGF8 1954 hgsc.bcm.edu hg19 19 42861598 42861598 + Missense_Mutation SNP C C G novel TCGA-DW-7834-01A-11D-2136-08 TCGA-DW-7834-10A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7f7db203-247b-49e1-a80e-c8be4047bc17 1354f438-e892-40c1-84b6-cd15f786a963 . MEGF8 NM_001271938 exon28 c.C4873G p.L1625V CACACCCTTACTG . 163.0 44.0 182.0 0.0 . 358 . . . none . . PASS Atlas-SNP NRIP1 8204 hgsc.bcm.edu hg19 21 16337670 16337670 + Silent SNP A A G novel TCGA-DW-7834-01A-11D-2136-08 TCGA-DW-7834-10A-01D-2136-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7f7db203-247b-49e1-a80e-c8be4047bc17 1354f438-e892-40c1-84b6-cd15f786a963 . NRIP1 NM_003489 exon4 c.T2844C p.D948D GGACAAATCTCGC . 157.0 44.0 150.0 0.0 . 103 . . . none . . PASS Atlas-SNP NCAM2 4685 hgsc.bcm.edu hg19 21 22658662 22658662 + Silent SNP A A T novel TCGA-DW-7834-01A-11D-2136-08 TCGA-DW-7834-10A-01D-2136-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7f7db203-247b-49e1-a80e-c8be4047bc17 1354f438-e892-40c1-84b6-cd15f786a963 . NCAM2 NM_004540 exon4 c.A411T p.R137R TTGCCGAGTTAGC . 55.0 15.0 64.0 0.0 . 220 . . . none . . PASS Atlas-SNP SON 6651 hgsc.bcm.edu hg19 21 34932382 34932382 + Missense_Mutation SNP A A G novel TCGA-DW-7834-01A-11D-2136-08 TCGA-DW-7834-10A-01D-2136-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7f7db203-247b-49e1-a80e-c8be4047bc17 1354f438-e892-40c1-84b6-cd15f786a963 . SON NM_032195 exon7 c.A6857G p.N2286S GGTACAACTATTT . 180.0 55.0 200.0 0.0 . 343 . . . none . . PASS Atlas-SNP RHBDD3 25807 hgsc.bcm.edu hg19 22 29656765 29656765 + Silent SNP C C A novel TCGA-DW-7834-01A-11D-2136-08 TCGA-DW-7834-10A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7f7db203-247b-49e1-a80e-c8be4047bc17 1354f438-e892-40c1-84b6-cd15f786a963 . RHBDD3 NM_012265 exon5 c.G621T p.G207G CCAGCACCCCGCC . 29.0 9.0 23.0 0.0 . 17 . . . none . . PASS Atlas-SNP MAP7D3 79649 hgsc.bcm.edu hg19 X 135314169 135314169 + Missense_Mutation SNP T T C novel TCGA-DW-7834-01A-11D-2136-08 TCGA-DW-7834-10A-01D-2136-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7f7db203-247b-49e1-a80e-c8be4047bc17 1354f438-e892-40c1-84b6-cd15f786a963 . MAP7D3 NM_024597 exon8 c.A947G p.N316S CTTGTGTTGCAGA . 192.0 23.0 209.0 0.0 . 102 . . . none . . PASS Atlas-SNP ELF3 1999 hgsc.bcm.edu hg19 1 201980419 201980420 + Frame_Shift_Ins INS - - G novel TCGA-DW-7834-01A-11D-2136-08 TCGA-DW-7834-10A-01D-2136-08 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7f7db203-247b-49e1-a80e-c8be4047bc17 1354f438-e892-40c1-84b6-cd15f786a963 ELF3_ENST00000359651,NS,carcinoma,0,2 ELF3 NM_004433 exon2 c.155_156insG p.E52fs . . 144.0 11.0 135.0 0.0 . 92 . 0.0763889 0 none . . PASS Atlas-INDEL