Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
NADK	65220	hgsc.bcm.edu	hg19	1	1686870	1686870	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	NADK	NM_001198994	exon9	c.T1066A	p.F356I	TCAGGAAGCCCAG	.	268.0	48.0	259.0	0.0	.	79	.	.	.	none	.	.	PASS	Atlas-SNP
RPL11	6135	hgsc.bcm.edu	hg19	1	24021204	24021204	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	RPL11	NM_000975	exon4	c.T319G	p.F107V	TTTGGTTTTGGGA	.	131.0	43.0	127.0	0.0	.	21	.	.	.	none	.	.	PASS	Atlas-SNP
ZSCAN20	7579	hgsc.bcm.edu	hg19	1	33956714	33956714	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	ZSCAN20	NM_145238	exon6	c.A856G	p.S286G	AAAAGGAGCACTG	.	86.0	4.0	82.0	0.0	.	107	.	.	.	none	.	.	PASS	Atlas-SNP
ZBTB37	84614	hgsc.bcm.edu	hg19	1	173839638	173839638	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	ZBTB37	NM_032522	exon3	c.T275C	p.I92T	GGCGGATATGCCT	.	80.0	19.0	71.0	0.0	.	38	.	.	.	none	.	.	PASS	Atlas-SNP
NFASC	23114	hgsc.bcm.edu	hg19	1	204923960	204923960	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	NFASC	NM_001005388	exon7	c.C416A	p.S139Y	CAGAATCTCCTCT	.	213.0	51.0	190.0	0.0	.	396	.	.	.	none	.	.	PASS	Atlas-SNP
ALPI	248	hgsc.bcm.edu	hg19	2	233322816	233322816	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	ALPI	NM_001631	exon8	c.C965T	p.P322L	GGAACCCCCGCGG	.	108.0	26.0	105.0	0.0	.	64	.	.	.	none	.	.	PASS	Atlas-SNP
PLXNB1	5364	hgsc.bcm.edu	hg19	3	48459373	48459373	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	PLXNB1	NM_001130082	exon16	c.G3321T	p.T1107T	AGCCACCGTGACC	.	94.0	20.0	87.0	0.0	.	150	.	.	.	none	.	.	PASS	Atlas-SNP
NDUFAF3	25915	hgsc.bcm.edu	hg19	3	49059877	49059877	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	NDUFAF3	NM_199069	exon2	c.A176T	p.Y59F	CAATGTACATCGA	.	106.0	23.0	66.0	0.0	.	9	.	.	.	none	.	.	PASS	Atlas-SNP
DNAH1	25981	hgsc.bcm.edu	hg19	3	52432935	52432935	+	Silent	SNP	A	A	G	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	DNAH1	NM_015512	exon76	c.A12159G	p.V4053V	GCTGGTAGTGATG	.	49.0	11.0	36.0	0.0	.	534	.	.	.	none	.	.	PASS	Atlas-SNP
ASCC3	10973	hgsc.bcm.edu	hg19	6	101296249	101296249	+	Silent	SNP	T	T	A	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	ASCC3	NM_006828	exon4	c.A576T	p.I192I	TAGGCTTATAGTT	.	70.0	16.0	67.0	0.0	.	205	.	.	.	none	.	.	PASS	Atlas-SNP
TTI2	80185	hgsc.bcm.edu	hg19	8	33369560	33369560	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	.	NM_001265581	exon2	c.T572A	p.F191Y	TGTAGGAATCCTG	.	363.0	95.0	353.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
PSCA	8000	hgsc.bcm.edu	hg19	8	143762846	143762846	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	PSCA	NM_005672	exon2	c.C127G	p.R43G	ACCGCGCGCATCC	.	16.0	6.0	14.0	0.0	.	9	.	.	.	none	.	.	PASS	Atlas-SNP
TLN1	7094	hgsc.bcm.edu	hg19	9	35698169	35698169	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	TLN1	NM_006289	exon56	c.G7372C	p.A2458P	CAGCAGCCTGGGC	.	83.0	14.0	70.0	0.0	.	185	.	.	.	none	.	.	PASS	Atlas-SNP
IFIT5	24138	hgsc.bcm.edu	hg19	10	91177427	91177427	+	Silent	SNP	A	A	G	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	IFIT5	NM_012420	exon2	c.A471G	p.Q157Q	TTATCAAAAGGCT	.	102.0	24.0	94.0	0.0	.	32	.	.	.	none	.	.	PASS	Atlas-SNP
DMBT1	1755	hgsc.bcm.edu	hg19	10	124352013	124352013	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	DMBT1_ENST00000368915,NS,carcinoma,0,3	DMBT1	NM_007329	exon20	c.G2402A	p.R801H	ATGTGCGCTGCTC	.	321.0	21.0	254.0	1.0	.	677	.	.	.	none	.	.	PASS	Atlas-SNP
MS4A8	83661	hgsc.bcm.edu	hg19	11	60482801	60482801	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	.	NM_031457	exon7	c.A667G	p.N223D	TATCCAAACATCT	.	75.0	6.0	79.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
HNRNPUL2	221092	hgsc.bcm.edu	hg19	11	62489600	62489600	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	HNRNPUL2	NM_001079559	exon7	c.G1348T	p.E450X	ATTCCTCTATGGT	.	101.0	25.0	74.0	0.0	.	41	.	.	.	none	.	.	PASS	Atlas-SNP
RAD51AP1	10635	hgsc.bcm.edu	hg19	12	4657343	4657343	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	RAD51AP1	NM_001130862	exon6	c.A456T	p.L152F	TTATTTAGGTAAG	.	108.0	46.0	82.0	0.0	.	30	.	.	.	none	.	.	PASS	Atlas-SNP
LMBR1L	55716	hgsc.bcm.edu	hg19	12	49500795	49500795	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	LMBR1L	NM_018113	exon2	c.C106A	p.L36I	GGCAGAGGATGTA	.	317.0	136.0	219.0	0.0	.	61	.	.	.	none	.	.	PASS	Atlas-SNP
PAH	5053	hgsc.bcm.edu	hg19	12	103234258	103234258	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	PAH	NM_000277	exon12	c.T1235C	p.V412A	TAGCGAACTGAGA	.	144.0	64.0	140.0	0.0	.	77	.	.	.	none	.	.	PASS	Atlas-SNP
HCAR2	338442	hgsc.bcm.edu	hg19	12	123187395	123187395	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	HCAR2	NM_177551	exon1	c.A436T	p.I146F	AGATGATGGCTGC	.	167.0	36.0	139.0	0.0	.	36	.	.	.	none	.	.	PASS	Atlas-SNP
CHRNA5	1138	hgsc.bcm.edu	hg19	15	78885562	78885562	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	CHRNA5	NM_000745	exon6	c.A1374C	p.L458F	TATATTAATACCA	.	59.0	13.0	57.0	0.0	.	48	.	.	.	none	.	.	PASS	Atlas-SNP
ADCY9	115	hgsc.bcm.edu	hg19	16	4029168	4029168	+	Silent	SNP	G	G	A	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	ADCY9	NM_001116	exon8	c.C2628T	p.P876P	CAGTGCGGGAAGC	.	157.0	30.0	140.0	0.0	.	151	.	.	.	none	.	.	PASS	Atlas-SNP
ACSM3	6296	hgsc.bcm.edu	hg19	16	20787239	20787239	+	Silent	SNP	C	C	T	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	ACSM3	NM_005622	exon3	c.C298T	p.L100L	GAGGAACTGGGAT	.	248.0	53.0	188.0	0.0	.	113	.	.	.	none	.	.	PASS	Atlas-SNP
WDR81	124997	hgsc.bcm.edu	hg19	17	1631524	1631524	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	WDR81	NM_001163809	exon1	c.G3271A	p.V1091M	CTCTATGTGACTG	.	152.0	25.0	102.0	0.0	.	180	.	.	.	none	.	.	PASS	Atlas-SNP
MYO19	80179	hgsc.bcm.edu	hg19	17	34871758	34871758	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	MYO19	NM_001163735	exon8	c.A490G	p.I164V	CTGCAATCTTGTG	.	74.0	13.0	54.0	0.0	.	130	.	.	.	none	.	.	PASS	Atlas-SNP
DGKE	8526	hgsc.bcm.edu	hg19	17	54926211	54926211	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	DGKE	NM_003647	exon6	c.A1043G	p.D348G	AACTAGATCGGTA	.	112.0	26.0	93.0	0.0	.	47	.	.	.	none	.	.	PASS	Atlas-SNP
STAP2	55620	hgsc.bcm.edu	hg19	19	4328673	4328673	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	STAP2	NM_001013841	exon6	c.G589C	p.G197R	CGCACCCGTTGTG	.	23.0	10.0	19.0	0.0	.	38	.	.	.	none	.	.	PASS	Atlas-SNP
PPP1R16B	26051	hgsc.bcm.edu	hg19	20	37536822	37536822	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	PPP1R16B	NM_015568	exon10	c.G1180T	p.E394X	GACCAAGAGAATA	.	84.0	14.0	49.0	0.0	.	103	.	.	.	none	.	.	PASS	Atlas-SNP
PPP1R16B	26051	hgsc.bcm.edu	hg19	20	37536828	37536828	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	PPP1R16B	NM_015568	exon10	c.A1186G	p.K396E	GAGAATAAGGACC	.	73.0	12.0	43.0	0.0	.	103	.	.	.	none	.	.	PASS	Atlas-SNP
APOL6	80830	hgsc.bcm.edu	hg19	22	36055619	36055619	+	Silent	SNP	C	C	G	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	APOL6,NS,carcinoma,0,1	APOL6	NM_030641	exon3	c.C1008G	p.V336V	GTGTGTCTGTGTG	.	32.0	3.0	27.0	0.0	.	26	.	.	.	none	.	.	PASS	Atlas-SNP
MICALL1	85377	hgsc.bcm.edu	hg19	22	38313744	38313744	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	MICALL1	NM_033386	exon4	c.C368T	p.A123V	GCCTTGCACCCTG	.	117.0	28.0	110.0	0.0	.	53	.	.	.	none	.	.	PASS	Atlas-SNP
MORC4	79710	hgsc.bcm.edu	hg19	X	106201626	106201626	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	MORC4	NM_001085354	exon11	c.T1325C	p.I442T	GGATCAATCTTCC	.	59.0	32.0	50.0	0.0	.	155	.	.	.	none	.	.	PASS	Atlas-SNP
NOM1	64434	hgsc.bcm.edu	hg19	7	156752614	156752614	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	NOM1	NM_138400	exon4	c.1377delG	p.G459fs	.	.	61.0	16.0	58.0	0.0	.	73	.	0.262295	0	none	.	.	PASS	Atlas-INDEL
ZNF407	55628	hgsc.bcm.edu	hg19	18	72344119	72344120	+	Frame_Shift_Ins	INS	-	-	TA	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	ZNF407	NM_001146190	exon1	c.1144_1145insTA	p.L382fs	.	.	94.0	26.0	75.0	0.0	.	231	.	0.276596	0	none	.	.	PASS	Atlas-INDEL
AGBL2	79841	hgsc.bcm.edu	hg19	11	47726183	47726183	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	AGBL2	NM_024783	exon7	c.499delT	p.F167fs	.	.	98.0	24.0	112.0	0.0	.	73	.	0.244898	0	none	.	.	PASS	Atlas-INDEL
LMO4	8543	hgsc.bcm.edu	hg19	1	87805263	87805263	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	LMO4	NM_006769	exon3	c.280delA	p.I94fs	.	.	58.0	17.0	54.0	0.0	.	21	.	0.293103	0	none	.	.	PASS	Atlas-INDEL
PDGFRB	5159	hgsc.bcm.edu	hg19	5	149515196	149515213	+	In_Frame_Del	DEL	CCGTGTCTAGCCCAGTGA	CCGTGTCTAGCCCAGTGA	-	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	CCGTGTCTAGCCCAGTGA	CCGTGTCTAGCCCAGTGA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	PDGFRB	NM_002609	exon3	c.270_287del	p.90_96del	.	.	120.0	19.0	153.0	0.0	.	142	.	0.158333	0	none	.	.	PASS	Atlas-INDEL