Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq TVarRat NVarRat dbSNP_Strength dbSNP_AF dbSNP_PopFreq Confidence Algorithm FMO4 2329 hgsc.bcm.edu hg19 1 171303821 171303821 + Missense_Mutation SNP A A G novel TCGA-BQ-5885-01A-11D-1589-08 TCGA-BQ-5885-11A-01D-1589-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fefc32ae-2b8e-46c8-8a7b-d536f9c71568 762ffc49-9149-4ea9-9dce-33e726dee43d . FMO4 NM_002022 exon8 c.A1099G p.I367V TTAGCCATCATCG . 138.0 43.0 176.0 0.0 . 64 . . . none . . PASS Atlas-SNP FMO4 2329 hgsc.bcm.edu hg19 1 171303822 171303822 + Missense_Mutation SNP T T C novel TCGA-BQ-5885-01A-11D-1589-08 TCGA-BQ-5885-11A-01D-1589-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fefc32ae-2b8e-46c8-8a7b-d536f9c71568 762ffc49-9149-4ea9-9dce-33e726dee43d . FMO4 NM_002022 exon8 c.T1100C p.I367T TAGCCATCATCGG . 136.0 43.0 171.0 0.0 . 64 . . . none . . PASS Atlas-SNP HEATR1 55127 hgsc.bcm.edu hg19 1 236738095 236738095 + Missense_Mutation SNP C C T novel TCGA-BQ-5885-01A-11D-1589-08 TCGA-BQ-5885-11A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fefc32ae-2b8e-46c8-8a7b-d536f9c71568 762ffc49-9149-4ea9-9dce-33e726dee43d . HEATR1 NM_018072 exon23 c.G3193A p.G1065R ACTTTCCCAGAGT . 108.0 43.0 117.0 0.0 . 197 . . . none . . PASS Atlas-SNP HEATR1 55127 hgsc.bcm.edu hg19 1 236749736 236749736 + Missense_Mutation SNP T T C novel TCGA-BQ-5885-01A-11D-1589-08 TCGA-BQ-5885-11A-01D-1589-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fefc32ae-2b8e-46c8-8a7b-d536f9c71568 762ffc49-9149-4ea9-9dce-33e726dee43d . HEATR1 NM_018072 exon15 c.A1732G p.I578V CGGCTATCTTAAG . 156.0 50.0 170.0 0.0 . 197 . . . none . . PASS Atlas-SNP CAD 790 hgsc.bcm.edu hg19 2 27440797 27440797 + Nonsense_Mutation SNP C C A novel TCGA-BQ-5885-01A-11D-1589-08 TCGA-BQ-5885-11A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fefc32ae-2b8e-46c8-8a7b-d536f9c71568 762ffc49-9149-4ea9-9dce-33e726dee43d . CAD NM_004341 exon2 c.C135A p.Y45X CTCCTACAAGGCA . 143.0 54.0 189.0 0.0 . 199 . . . none . . PASS Atlas-SNP RTN4 57142 hgsc.bcm.edu hg19 2 55253513 55253513 + Missense_Mutation SNP T T A novel TCGA-BQ-5885-01A-11D-1589-08 TCGA-BQ-5885-11A-01D-1589-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fefc32ae-2b8e-46c8-8a7b-d536f9c71568 762ffc49-9149-4ea9-9dce-33e726dee43d . RTN4 NM_020532 exon3 c.A1722T p.E574D TTTTGTTTCATAA . 130.0 32.0 165.0 0.0 . 189 . . . none . . PASS Atlas-SNP RTN4 57142 hgsc.bcm.edu hg19 2 55253514 55253514 + Missense_Mutation SNP T T G novel TCGA-BQ-5885-01A-11D-1589-08 TCGA-BQ-5885-11A-01D-1589-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fefc32ae-2b8e-46c8-8a7b-d536f9c71568 762ffc49-9149-4ea9-9dce-33e726dee43d . RTN4 NM_020532 exon3 c.A1721C p.E574A TTTGTTTCATAAG . 132.0 33.0 165.0 0.0 . 189 . . . none . . PASS Atlas-SNP ALMS1 7840 hgsc.bcm.edu hg19 2 73680677 73680677 + Silent SNP T T C novel TCGA-BQ-5885-01A-11D-1589-08 TCGA-BQ-5885-11A-01D-1589-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fefc32ae-2b8e-46c8-8a7b-d536f9c71568 762ffc49-9149-4ea9-9dce-33e726dee43d . ALMS1 NM_015120 exon8 c.T7020C p.N2340N GACGAATTTGAAA . 71.0 14.0 80.0 0.0 . 384 . . . none . . PASS Atlas-SNP SEMA4F 10505 hgsc.bcm.edu hg19 2 74902749 74902749 + Missense_Mutation SNP G G A novel TCGA-BQ-5885-01A-11D-1589-08 TCGA-BQ-5885-11A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fefc32ae-2b8e-46c8-8a7b-d536f9c71568 762ffc49-9149-4ea9-9dce-33e726dee43d SEMA4F,rectum,carcinoma,0,1 SEMA4F NM_004263 exon11 c.G1470A p.M490I GAACATGAAATTG . 134.0 40.0 123.0 0.0 . 89 . . . none . . PASS Atlas-SNP TBC1D8 11138 hgsc.bcm.edu hg19 2 101670697 101670697 + Silent SNP G G A novel TCGA-BQ-5885-01A-11D-1589-08 TCGA-BQ-5885-11A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fefc32ae-2b8e-46c8-8a7b-d536f9c71568 762ffc49-9149-4ea9-9dce-33e726dee43d . TBC1D8 NM_001102426 exon4 c.C459T p.F153F CTCGGGGAAGTTG . 18.0 12.0 20.0 0.0 . 169 . . . none . . PASS Atlas-SNP TMEM177 80775 hgsc.bcm.edu hg19 2 120439354 120439354 + Missense_Mutation SNP G G A novel TCGA-BQ-5885-01A-11D-1589-08 TCGA-BQ-5885-11A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fefc32ae-2b8e-46c8-8a7b-d536f9c71568 762ffc49-9149-4ea9-9dce-33e726dee43d . TMEM177 NM_030577 exon2 c.G925A p.G309S AATCCGGGCCGCT . 129.0 44.0 139.0 0.0 . 26 . . . none . . PASS Atlas-SNP LRP1B 53353 hgsc.bcm.edu hg19 2 141819633 141819633 + Missense_Mutation SNP A A T novel TCGA-BQ-5885-01A-11D-1589-08 TCGA-BQ-5885-11A-01D-1589-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fefc32ae-2b8e-46c8-8a7b-d536f9c71568 762ffc49-9149-4ea9-9dce-33e726dee43d . LRP1B NM_018557 exon8 c.T1223A p.I408N CCTTGAATGACAG . 212.0 76.0 201.0 0.0 . 1315 . . . none . . PASS Atlas-SNP LRP2 4036 hgsc.bcm.edu hg19 2 170083080 170083080 + Missense_Mutation SNP A A G novel TCGA-BQ-5885-01A-11D-1589-08 TCGA-BQ-5885-11A-01D-1589-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fefc32ae-2b8e-46c8-8a7b-d536f9c71568 762ffc49-9149-4ea9-9dce-33e726dee43d . LRP2 NM_004525 exon32 c.T5246C p.I1749T ACAGTTATTAAGA . 119.0 26.0 105.0 0.0 . 751 . . . none . . PASS Atlas-SNP CUL3 8452 hgsc.bcm.edu hg19 2 225422516 225422516 + Nonsense_Mutation SNP G G A novel TCGA-BQ-5885-01A-11D-1589-08 TCGA-BQ-5885-11A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fefc32ae-2b8e-46c8-8a7b-d536f9c71568 762ffc49-9149-4ea9-9dce-33e726dee43d . CUL3 NM_001257198 exon2 c.C142T p.Q48X TTTCTTGAATTGC . 99.0 53.0 81.0 0.0 . 96 . . . none . . PASS Atlas-SNP USP40 55230 hgsc.bcm.edu hg19 2 234449396 234449396 + Missense_Mutation SNP G G T novel TCGA-BQ-5885-01A-11D-1589-08 TCGA-BQ-5885-11A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fefc32ae-2b8e-46c8-8a7b-d536f9c71568 762ffc49-9149-4ea9-9dce-33e726dee43d USP40_ENST00000450966,NS,carcinoma,0,4 USP40 NM_018218 exon9 c.C1115A p.P372H TCAACAGGAATTA . 248.0 111.0 254.0 2.0 . 174 . . . none . . PASS Atlas-SNP TRPM8 79054 hgsc.bcm.edu hg19 2 234847784 234847784 + Missense_Mutation SNP T T A novel TCGA-BQ-5885-01A-11D-1589-08 TCGA-BQ-5885-11A-01D-1589-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fefc32ae-2b8e-46c8-8a7b-d536f9c71568 762ffc49-9149-4ea9-9dce-33e726dee43d . TRPM8 NM_024080 exon5 c.T491A p.I164N GCAAGATCTTCAG . 82.0 32.0 64.0 0.0 . 146 . . . none . . PASS Atlas-SNP ATP2B2 491 hgsc.bcm.edu hg19 3 10387742 10387742 + Silent SNP G G A novel TCGA-BQ-5885-01A-11D-1589-08 TCGA-BQ-5885-11A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fefc32ae-2b8e-46c8-8a7b-d536f9c71568 762ffc49-9149-4ea9-9dce-33e726dee43d . ATP2B2 NM_001001331 exon17 c.C2484T p.L828L CTTCTTGAGTGCA . 67.0 17.0 72.0 0.0 . 304 . . . none . . PASS Atlas-SNP FYCO1 79443 hgsc.bcm.edu hg19 3 46009968 46009968 + Silent SNP C C T novel TCGA-BQ-5885-01A-11D-1589-08 TCGA-BQ-5885-11A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fefc32ae-2b8e-46c8-8a7b-d536f9c71568 762ffc49-9149-4ea9-9dce-33e726dee43d . FYCO1 NM_024513 exon8 c.G858A p.E286E GTTGTCCTCCGCT . 91.0 20.0 115.0 0.0 . 115 . . . none . . PASS Atlas-SNP CCR5 1234 hgsc.bcm.edu hg19 3 46415150 46415150 + Missense_Mutation SNP A A T novel TCGA-BQ-5885-01A-11D-1589-08 TCGA-BQ-5885-11A-01D-1589-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fefc32ae-2b8e-46c8-8a7b-d536f9c71568 762ffc49-9149-4ea9-9dce-33e726dee43d . CCR5 NM_000579 exon3 c.A757T p.I253F TACAACATTGTCC . 556.0 164.0 688.0 0.0 . 128 . . . none . . PASS Atlas-SNP QTRTD1 79691 hgsc.bcm.edu hg19 3 113798773 113798773 + Missense_Mutation SNP G G A rs199551955 TCGA-BQ-5885-01A-11D-1589-08 TCGA-BQ-5885-11A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fefc32ae-2b8e-46c8-8a7b-d536f9c71568 762ffc49-9149-4ea9-9dce-33e726dee43d . QTRTD1 NM_001256835 exon7 c.G803A p.R268Q TTAGTCGGCCAGA . 280.0 111.0 320.0 0.0 . 29 . . . weak . . PASS Atlas-SNP ZBBX 79740 hgsc.bcm.edu hg19 3 167083714 167083714 + Missense_Mutation SNP T T G novel TCGA-BQ-5885-01A-11D-1589-08 TCGA-BQ-5885-11A-01D-1589-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fefc32ae-2b8e-46c8-8a7b-d536f9c71568 762ffc49-9149-4ea9-9dce-33e726dee43d . ZBBX NM_024687 exon6 c.A233C p.Q78P TATGATTGATTGA . 108.0 39.0 134.0 0.0 . 299 . . . none . . PASS Atlas-SNP TNFSF10 8743 hgsc.bcm.edu hg19 3 172224404 172224404 + Missense_Mutation SNP T T A novel TCGA-BQ-5885-01A-11D-1589-08 TCGA-BQ-5885-11A-01D-1589-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fefc32ae-2b8e-46c8-8a7b-d536f9c71568 762ffc49-9149-4ea9-9dce-33e726dee43d . TNFSF10 NM_003810 exon5 c.A724T p.I242F GATAGATGGAATA . 176.0 60.0 171.0 0.0 . 30 . . . none . . PASS Atlas-SNP OTOP1 133060 hgsc.bcm.edu hg19 4 4199006 4199006 + Missense_Mutation SNP T T C novel TCGA-BQ-5885-01A-11D-1589-08 TCGA-BQ-5885-11A-01D-1589-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fefc32ae-2b8e-46c8-8a7b-d536f9c71568 762ffc49-9149-4ea9-9dce-33e726dee43d . OTOP1 NM_177998 exon5 c.A1555G p.S519G AGCTGCTCTCCTC . 94.0 25.0 119.0 0.0 . 118 . . . none . . PASS Atlas-SNP OTOP1 133060 hgsc.bcm.edu hg19 4 4199007 4199007 + Silent SNP C C T novel TCGA-BQ-5885-01A-11D-1589-08 TCGA-BQ-5885-11A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fefc32ae-2b8e-46c8-8a7b-d536f9c71568 762ffc49-9149-4ea9-9dce-33e726dee43d . OTOP1 NM_177998 exon5 c.G1554A p.E518E GCTGCTCTCCTCC . 96.0 27.0 117.0 0.0 . 118 . . . none . . PASS Atlas-SNP SDAD1 55153 hgsc.bcm.edu hg19 4 76877179 76877179 + Silent SNP C C T novel TCGA-BQ-5885-01A-11D-1589-08 TCGA-BQ-5885-11A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fefc32ae-2b8e-46c8-8a7b-d536f9c71568 762ffc49-9149-4ea9-9dce-33e726dee43d . SDAD1 NM_018115 exon21 c.G1965A p.R655R GCTATACCGCATC . 311.0 101.0 392.0 0.0 . 47 . . . none . . PASS Atlas-SNP ADAD1 132612 hgsc.bcm.edu hg19 4 123336554 123336554 + Missense_Mutation SNP A A G novel TCGA-BQ-5885-01A-11D-1589-08 TCGA-BQ-5885-11A-01D-1589-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fefc32ae-2b8e-46c8-8a7b-d536f9c71568 762ffc49-9149-4ea9-9dce-33e726dee43d ADAD1,colon,carcinoma,0,1 ADAD1 NM_139243 exon11 c.A1270G p.T424A AGTGATACCAGAG . 125.0 10.0 171.0 1.0 . 94 . . . none . . PASS Atlas-SNP PLK4 10733 hgsc.bcm.edu hg19 4 128804442 128804442 + Missense_Mutation SNP C C T novel TCGA-BQ-5885-01A-11D-1589-08 TCGA-BQ-5885-11A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fefc32ae-2b8e-46c8-8a7b-d536f9c71568 762ffc49-9149-4ea9-9dce-33e726dee43d . PLK4 NM_014264 exon3 c.C152T p.A51V ACAAAGCAGGAAT . 48.0 13.0 53.0 0.0 . 65 . . . none . . PASS Atlas-SNP LRBA 987 hgsc.bcm.edu hg19 4 151829520 151829520 + Nonsense_Mutation SNP G G A novel TCGA-BQ-5885-01A-11D-1589-08 TCGA-BQ-5885-11A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fefc32ae-2b8e-46c8-8a7b-d536f9c71568 762ffc49-9149-4ea9-9dce-33e726dee43d . LRBA NM_006726 exon11 c.C1459T p.Q487X AATATTGCCTGTA . 93.0 31.0 115.0 0.0 . 253 . . . none . . PASS Atlas-SNP GOLPH3 64083 hgsc.bcm.edu hg19 5 32126417 32126417 + Missense_Mutation SNP C C A novel TCGA-BQ-5885-01A-11D-1589-08 TCGA-BQ-5885-11A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fefc32ae-2b8e-46c8-8a7b-d536f9c71568 762ffc49-9149-4ea9-9dce-33e726dee43d . GOLPH3 NM_022130 exon4 c.G798T p.K266N CACTCTCTTGGTA . 142.0 33.0 155.0 0.0 . 25 . . . none . . PASS Atlas-SNP GPBP1 65056 hgsc.bcm.edu hg19 5 56545332 56545332 + Missense_Mutation SNP T T G novel TCGA-BQ-5885-01A-11D-1589-08 TCGA-BQ-5885-11A-01D-1589-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fefc32ae-2b8e-46c8-8a7b-d536f9c71568 762ffc49-9149-4ea9-9dce-33e726dee43d . GPBP1 NM_001127236 exon8 c.T922G p.F308V AGTGAATTTTTGA . 107.0 32.0 95.0 0.0 . 51 . . . none . . PASS Atlas-SNP CD180 4064 hgsc.bcm.edu hg19 5 66478708 66478708 + Silent SNP T T G novel TCGA-BQ-5885-01A-11D-1589-08 TCGA-BQ-5885-11A-01D-1589-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fefc32ae-2b8e-46c8-8a7b-d536f9c71568 762ffc49-9149-4ea9-9dce-33e726dee43d . CD180 NM_005582 exon3 c.A1963C p.R655R TCCACCTGAGAAG . 51.0 18.0 84.0 0.0 . 78 . . . none . . PASS Atlas-SNP LNPEP 4012 hgsc.bcm.edu hg19 5 96328816 96328816 + Missense_Mutation SNP T T A novel TCGA-BQ-5885-01A-11D-1589-08 TCGA-BQ-5885-11A-01D-1589-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fefc32ae-2b8e-46c8-8a7b-d536f9c71568 762ffc49-9149-4ea9-9dce-33e726dee43d . LNPEP NM_005575 exon5 c.T1229A p.I410N TTGAAATTCAGTA . 112.0 46.0 130.0 0.0 . 80 . . . none . . PASS Atlas-SNP PCDHA9 9752 hgsc.bcm.edu hg19 5 140228538 140228538 + Missense_Mutation SNP C C A novel TCGA-BQ-5885-01A-11D-1589-08 TCGA-BQ-5885-11A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fefc32ae-2b8e-46c8-8a7b-d536f9c71568 762ffc49-9149-4ea9-9dce-33e726dee43d . PCDHA9 NM_031857 exon1 c.C458A p.P153Q GGTTTCCACTAGA . 194.0 45.0 189.0 0.0 . 373 . . . none . . PASS Atlas-SNP DDX39B 7919 hgsc.bcm.edu hg19 6 31507042 31507042 + Missense_Mutation SNP T T C novel TCGA-BQ-5885-01A-11D-1589-08 TCGA-BQ-5885-11A-01D-1589-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fefc32ae-2b8e-46c8-8a7b-d536f9c71568 762ffc49-9149-4ea9-9dce-33e726dee43d . DDX39B NM_004640 exon3 c.A221G p.E74G ATGCACTCATGCT . 114.0 48.0 146.0 0.0 . 38 . . . none . . PASS Atlas-SNP DST 667 hgsc.bcm.edu hg19 6 56347659 56347659 + Missense_Mutation SNP A A G novel TCGA-BQ-5885-01A-11D-1589-08 TCGA-BQ-5885-11A-01D-1589-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fefc32ae-2b8e-46c8-8a7b-d536f9c71568 762ffc49-9149-4ea9-9dce-33e726dee43d . DST NM_015548 exon70 c.T13355C p.L4452S TTCCCCAACTCTT . 63.0 22.0 79.0 0.0 . 1427 . . . none . . PASS Atlas-SNP SLC35D3 340146 hgsc.bcm.edu hg19 6 137243696 137243696 + Missense_Mutation SNP G G C novel TCGA-BQ-5885-01A-11D-1589-08 TCGA-BQ-5885-11A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fefc32ae-2b8e-46c8-8a7b-d536f9c71568 762ffc49-9149-4ea9-9dce-33e726dee43d . SLC35D3 NM_001008783 exon1 c.G130C p.V44L ACCCTGGTGCAGT . 50.0 17.0 61.0 0.0 . 33 . . . none . . PASS Atlas-SNP TAX1BP1 8887 hgsc.bcm.edu hg19 7 27856087 27856087 + Silent SNP T T C novel TCGA-BQ-5885-01A-11D-1589-08 TCGA-BQ-5885-11A-01D-1589-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fefc32ae-2b8e-46c8-8a7b-d536f9c71568 762ffc49-9149-4ea9-9dce-33e726dee43d . TAX1BP1 NM_006024 exon14 c.T1884C p.N628N GTCAAATGCACAA . 298.0 100.0 347.0 0.0 . 71 . . . none . . PASS Atlas-SNP ZNF679 168417 hgsc.bcm.edu hg19 7 63721262 63721262 + Missense_Mutation SNP G G A novel TCGA-BQ-5885-01A-11D-1589-08 TCGA-BQ-5885-11A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fefc32ae-2b8e-46c8-8a7b-d536f9c71568 762ffc49-9149-4ea9-9dce-33e726dee43d . ZNF679 NM_153363 exon4 c.G217A p.E73K AATAAAGAGCCTT . 60.0 24.0 73.0 0.0 . 80 . . . none . . PASS Atlas-SNP AKAP9 10142 hgsc.bcm.edu hg19 7 91631868 91631868 + Silent SNP A A G novel TCGA-BQ-5885-01A-11D-1589-08 TCGA-BQ-5885-11A-01D-1589-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fefc32ae-2b8e-46c8-8a7b-d536f9c71568 762ffc49-9149-4ea9-9dce-33e726dee43d . AKAP9 NM_005751 exon8 c.A2637G p.E879E TTTAGAAGACAGT . 75.0 21.0 98.0 0.0 . 788 . . . none . . PASS Atlas-SNP PEX1 5189 hgsc.bcm.edu hg19 7 92119227 92119227 + Splice_Site SNP T T C novel TCGA-BQ-5885-01A-11D-1589-08 TCGA-BQ-5885-11A-01D-1589-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fefc32ae-2b8e-46c8-8a7b-d536f9c71568 762ffc49-9149-4ea9-9dce-33e726dee43d . PEX1 NM_000466 exon23 c.3439-2A>G . GAGCTCTGCATGG . 48.0 21.0 63.0 0.0 . 102 . . . none . . PASS Atlas-SNP SLC7A2 6542 hgsc.bcm.edu hg19 8 17401959 17401959 + Splice_Site SNP G G T novel TCGA-BQ-5885-01A-11D-1589-08 TCGA-BQ-5885-11A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fefc32ae-2b8e-46c8-8a7b-d536f9c71568 762ffc49-9149-4ea9-9dce-33e726dee43d . SLC7A2 NM_001008539 exon3 c.377-1G>T . TGGGAAGGTACAT . 127.0 41.0 142.0 0.0 . 157 . . . none . . PASS Atlas-SNP EBF2 64641 hgsc.bcm.edu hg19 8 25715868 25715868 + Silent SNP G G A novel TCGA-BQ-5885-01A-11D-1589-08 TCGA-BQ-5885-11A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fefc32ae-2b8e-46c8-8a7b-d536f9c71568 762ffc49-9149-4ea9-9dce-33e726dee43d . EBF2 NM_022659 exon14 c.C1495T p.L499L CATTTAGAAATCC . 74.0 24.0 120.0 0.0 . 138 . . . none . . PASS Atlas-SNP PHF20L1 51105 hgsc.bcm.edu hg19 8 133854952 133854952 + Missense_Mutation SNP G G C novel TCGA-BQ-5885-01A-11D-1589-08 TCGA-BQ-5885-11A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fefc32ae-2b8e-46c8-8a7b-d536f9c71568 762ffc49-9149-4ea9-9dce-33e726dee43d . PHF20L1 NM_016018 exon19 c.G2580C p.E860D AAGTGAGCATAGC . 104.0 49.0 86.0 0.0 . 129 . . . none . . PASS Atlas-SNP EPPK1 83481 hgsc.bcm.edu hg19 8 144944250 144944250 + Missense_Mutation SNP G G T novel TCGA-BQ-5885-01A-11D-1589-08 TCGA-BQ-5885-11A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fefc32ae-2b8e-46c8-8a7b-d536f9c71568 762ffc49-9149-4ea9-9dce-33e726dee43d . EPPK1 NM_031308 exon1 c.C3172A p.L1058I TGGGGAGGTGGTG . 22.0 6.0 20.0 0.0 . 199 . . . none . . PASS Atlas-SNP ARHGAP39 80728 hgsc.bcm.edu hg19 8 145806407 145806407 + Missense_Mutation SNP T T C novel TCGA-BQ-5885-01A-11D-1589-08 TCGA-BQ-5885-11A-01D-1589-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fefc32ae-2b8e-46c8-8a7b-d536f9c71568 762ffc49-9149-4ea9-9dce-33e726dee43d . ARHGAP39 NM_025251 exon4 c.A335G p.N112S TCCGTGTTCTGCT . 16.0 7.0 9.0 0.0 . 80 . . . none . . PASS Atlas-SNP SMC5 23137 hgsc.bcm.edu hg19 9 72901129 72901129 + Missense_Mutation SNP A A T novel TCGA-BQ-5885-01A-11D-1589-08 TCGA-BQ-5885-11A-01D-1589-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fefc32ae-2b8e-46c8-8a7b-d536f9c71568 762ffc49-9149-4ea9-9dce-33e726dee43d . SMC5 NM_015110 exon8 c.A995T p.K332M ATATTAAGGAGGC . 104.0 37.0 167.0 0.0 . 96 . . . none . . PASS Atlas-SNP PAPPA 5069 hgsc.bcm.edu hg19 9 118997553 118997553 + Missense_Mutation SNP C C G novel TCGA-BQ-5885-01A-11D-1589-08 TCGA-BQ-5885-11A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fefc32ae-2b8e-46c8-8a7b-d536f9c71568 762ffc49-9149-4ea9-9dce-33e726dee43d . PAPPA NM_002581 exon7 c.C2369G p.P790R TCTACCCCTTGGT . 85.0 31.0 110.0 0.0 . 243 . . . none . . PASS Atlas-SNP USP54 159195 hgsc.bcm.edu hg19 10 75294429 75294429 + Missense_Mutation SNP G G A novel TCGA-BQ-5885-01A-11D-1589-08 TCGA-BQ-5885-11A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fefc32ae-2b8e-46c8-8a7b-d536f9c71568 762ffc49-9149-4ea9-9dce-33e726dee43d . USP54 NM_152586 exon10 c.C1244T p.S415F TCAGAAGAGAAGT . 89.0 31.0 100.0 0.0 . 178 . . . none . . PASS Atlas-SNP GBF1 8729 hgsc.bcm.edu hg19 10 104130513 104130513 + Missense_Mutation SNP C C A novel TCGA-BQ-5885-01A-11D-1589-08 TCGA-BQ-5885-11A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fefc32ae-2b8e-46c8-8a7b-d536f9c71568 762ffc49-9149-4ea9-9dce-33e726dee43d . GBF1 NM_001199378 exon29 c.C3556A p.L1186I TACCACCTCTGTG . 179.0 62.0 239.0 0.0 . 142 . . . none . . PASS Atlas-SNP CNNM2 54805 hgsc.bcm.edu hg19 10 104679308 104679308 + Missense_Mutation SNP G G T novel TCGA-BQ-5885-01A-11D-1589-08 TCGA-BQ-5885-11A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fefc32ae-2b8e-46c8-8a7b-d536f9c71568 762ffc49-9149-4ea9-9dce-33e726dee43d . CNNM2 NM_199076 exon1 c.G1071T p.E357D CGGAGAGATCGTG . 125.0 42.0 129.0 0.0 . 119 . . . none . . PASS Atlas-SNP SORCS1 114815 hgsc.bcm.edu hg19 10 108412294 108412294 + Missense_Mutation SNP G G A novel TCGA-BQ-5885-01A-11D-1589-08 TCGA-BQ-5885-11A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fefc32ae-2b8e-46c8-8a7b-d536f9c71568 762ffc49-9149-4ea9-9dce-33e726dee43d . SORCS1 NM_001206572 exon18 c.C2321T p.S774F TTATTGGAAACCA . 116.0 37.0 137.0 0.0 . 534 . . . none . . PASS Atlas-SNP MMP21 118856 hgsc.bcm.edu hg19 10 127455494 127455494 + Missense_Mutation SNP T T G novel TCGA-BQ-5885-01A-11D-1589-08 TCGA-BQ-5885-11A-01D-1589-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fefc32ae-2b8e-46c8-8a7b-d536f9c71568 762ffc49-9149-4ea9-9dce-33e726dee43d . MMP21 NM_147191 exon7 c.A1447C p.N483H AAGAATTAAGTAC . 98.0 27.0 120.0 0.0 . 46 . . . none . . PASS Atlas-SNP PHRF1 57661 hgsc.bcm.edu hg19 11 601639 601639 + Missense_Mutation SNP T T C novel TCGA-BQ-5885-01A-11D-1589-08 TCGA-BQ-5885-11A-01D-1589-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fefc32ae-2b8e-46c8-8a7b-d536f9c71568 762ffc49-9149-4ea9-9dce-33e726dee43d . PHRF1 NM_020901 exon10 c.T1090C p.S364P AAGAGCTCAGCGA . 59.0 29.0 70.0 0.0 . 188 . . . none . . PASS Atlas-SNP FAU 2197 hgsc.bcm.edu hg19 11 64888258 64888258 + Missense_Mutation SNP C C A rs3202210 alternate_allele TCGA-BQ-5885-01A-11D-1589-08 TCGA-BQ-5885-11A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fefc32ae-2b8e-46c8-8a7b-d536f9c71568 762ffc49-9149-4ea9-9dce-33e726dee43d . FAU NM_001997 exon5 c.G297T p.K99N CTTCTTCTTCTTC . 220.0 80.0 254.0 0.0 . 17 . . . alt . . PASS Atlas-SNP DPP3 10072 hgsc.bcm.edu hg19 11 66260242 66260242 + Silent SNP G G A rs200674271 TCGA-BQ-5885-01A-11D-1589-08 TCGA-BQ-5885-11A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fefc32ae-2b8e-46c8-8a7b-d536f9c71568 762ffc49-9149-4ea9-9dce-33e726dee43d . DPP3 NM_130443 exon10 c.G1044A p.A348A GGTGGCGAGCGCA . 149.0 64.0 145.0 0.0 . 61 . . . weak . . PASS Atlas-SNP DGAT2 84649 hgsc.bcm.edu hg19 11 75509461 75509461 + Silent SNP C C T novel TCGA-BQ-5885-01A-11D-1589-08 TCGA-BQ-5885-11A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fefc32ae-2b8e-46c8-8a7b-d536f9c71568 762ffc49-9149-4ea9-9dce-33e726dee43d . DGAT2 NM_032564 exon7 c.C999T p.P333P CAAGCCCATCACC . 51.0 17.0 58.0 0.0 . 37 . . . none . . PASS Atlas-SNP CNTN5 53942 hgsc.bcm.edu hg19 11 99690367 99690367 + Missense_Mutation SNP A A C novel TCGA-BQ-5885-01A-11D-1589-08 TCGA-BQ-5885-11A-01D-1589-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fefc32ae-2b8e-46c8-8a7b-d536f9c71568 762ffc49-9149-4ea9-9dce-33e726dee43d . CNTN5 NM_001243270 exon3 c.A148C p.T50P TCCAAAACCAGAC . 107.0 13.0 164.0 0.0 . 324 . . . none . . PASS Atlas-SNP BCL9L 283149 hgsc.bcm.edu hg19 11 118771686 118771686 + Missense_Mutation SNP A A C novel TCGA-BQ-5885-01A-11D-1589-08 TCGA-BQ-5885-11A-01D-1589-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fefc32ae-2b8e-46c8-8a7b-d536f9c71568 762ffc49-9149-4ea9-9dce-33e726dee43d . BCL9L NM_182557 exon6 c.T2766G p.N922K CATCTGATTAATA . 70.0 19.0 92.0 0.0 . 254 . . . none . . PASS Atlas-SNP OR8B8 26493 hgsc.bcm.edu hg19 11 124310919 124310919 + Silent SNP C C T novel TCGA-BQ-5885-01A-11D-1589-08 TCGA-BQ-5885-11A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fefc32ae-2b8e-46c8-8a7b-d536f9c71568 762ffc49-9149-4ea9-9dce-33e726dee43d . OR8B8 NM_012378 exon1 c.G63A p.P21P GACTCCCGGTTGG . 76.0 28.0 113.0 0.0 . 76 . . . none . . PASS Atlas-SNP C3AR1 719 hgsc.bcm.edu hg19 12 8212439 8212439 + Missense_Mutation SNP C C T novel TCGA-BQ-5885-01A-11D-1589-08 TCGA-BQ-5885-11A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fefc32ae-2b8e-46c8-8a7b-d536f9c71568 762ffc49-9149-4ea9-9dce-33e726dee43d . C3AR1 NM_004054 exon2 c.G343A p.A115T TAATGGCAGTAAG . 80.0 22.0 73.0 0.0 . 61 . . . none . . PASS Atlas-SNP KRT77 374454 hgsc.bcm.edu hg19 12 53086340 53086340 + Missense_Mutation SNP A A C rs200694410 TCGA-BQ-5885-01A-11D-1589-08 TCGA-BQ-5885-11A-01D-1589-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fefc32ae-2b8e-46c8-8a7b-d536f9c71568 762ffc49-9149-4ea9-9dce-33e726dee43d .,1 KRT77 NM_175078 exon7 c.T1292G p.L431R TCCTCCAGGTCCT . 44.0 4.0 41.0 1.0 . 58 . . . weak . . PASS Atlas-SNP ATF7 11016 hgsc.bcm.edu hg19 12 53931334 53931334 + Silent SNP A A T novel TCGA-BQ-5885-01A-11D-1589-08 TCGA-BQ-5885-11A-01D-1589-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fefc32ae-2b8e-46c8-8a7b-d536f9c71568 762ffc49-9149-4ea9-9dce-33e726dee43d . ATF7 NM_001130060 exon5 c.T267A p.A89A AGCAGCAGCCTGT . 49.0 16.0 59.0 0.0 . 51 . . . none . . PASS Atlas-SNP SRGAP1 57522 hgsc.bcm.edu hg19 12 64521913 64521913 + Missense_Mutation SNP C C A novel TCGA-BQ-5885-01A-11D-1589-08 TCGA-BQ-5885-11A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fefc32ae-2b8e-46c8-8a7b-d536f9c71568 762ffc49-9149-4ea9-9dce-33e726dee43d SRGAP1,NS,carcinoma,0,1 SRGAP1 NM_020762 exon21 c.C2813A p.S938Y GAAGGTCCACGTC . 43.0 12.0 46.0 0.0 . 146 . . . none . . PASS Atlas-SNP EID3 493861 hgsc.bcm.edu hg19 12 104698219 104698219 + Missense_Mutation SNP T T A novel TCGA-BQ-5885-01A-11D-1589-08 TCGA-BQ-5885-11A-01D-1589-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fefc32ae-2b8e-46c8-8a7b-d536f9c71568 762ffc49-9149-4ea9-9dce-33e726dee43d . EID3 NM_001008394 exon1 c.T507A p.H169Q ATTCCATTTTGTT . 282.0 113.0 355.0 0.0 . 28 . . . none . . PASS Atlas-SNP ARHGEF7 8874 hgsc.bcm.edu hg19 13 111885553 111885553 + Silent SNP G G A novel TCGA-BQ-5885-01A-11D-1589-08 TCGA-BQ-5885-11A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fefc32ae-2b8e-46c8-8a7b-d536f9c71568 762ffc49-9149-4ea9-9dce-33e726dee43d . ARHGEF7 NM_001113511 exon7 c.G735A p.E245E TTCAGAGAAGCCT . 132.0 76.0 192.0 1.0 . 157 . . . none . . PASS Atlas-SNP SMG1 23049 hgsc.bcm.edu hg19 16 18841597 18841597 + Missense_Mutation SNP C C T rs371226711 alternate_allele TCGA-BQ-5885-01A-11D-1589-08 TCGA-BQ-5885-11A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fefc32ae-2b8e-46c8-8a7b-d536f9c71568 762ffc49-9149-4ea9-9dce-33e726dee43d . SMG1 NM_015092 exon52 c.G8887A p.A2963T CGAATGCTACCAA . 47.0 21.0 49.0 0.0 . 401 . . . alt . . PASS Atlas-SNP NKD1 85407 hgsc.bcm.edu hg19 16 50667463 50667463 + Missense_Mutation SNP C C G novel TCGA-BQ-5885-01A-11D-1589-08 TCGA-BQ-5885-11A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fefc32ae-2b8e-46c8-8a7b-d536f9c71568 762ffc49-9149-4ea9-9dce-33e726dee43d . NKD1 NM_033119 exon10 c.C1184G p.A395G CCCTAGCCCCCCT . 32.0 11.0 34.0 0.0 . 43 . . . none . . PASS Atlas-SNP TRPV3 162514 hgsc.bcm.edu hg19 17 3458126 3458126 + Missense_Mutation SNP C C T novel TCGA-BQ-5885-01A-11D-1589-08 TCGA-BQ-5885-11A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fefc32ae-2b8e-46c8-8a7b-d536f9c71568 762ffc49-9149-4ea9-9dce-33e726dee43d . TRPV3 NM_001258205 exon2 c.G19A p.E7K CCATCTCCTTGGG . 80.0 25.0 73.0 0.0 . 85 . . . none . . PASS Atlas-SNP COX10 1352 hgsc.bcm.edu hg19 17 13977738 13977738 + Missense_Mutation SNP A A C novel TCGA-BQ-5885-01A-11D-1589-08 TCGA-BQ-5885-11A-01D-1589-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fefc32ae-2b8e-46c8-8a7b-d536f9c71568 762ffc49-9149-4ea9-9dce-33e726dee43d . COX10 NM_001303 exon2 c.A142C p.I48L CAGTGGATTACAT . 324.0 115.0 383.0 1.0 . 36 . . . none . . PASS Atlas-SNP TEX19 400629 hgsc.bcm.edu hg19 17 80320426 80320426 + Missense_Mutation SNP C C A novel TCGA-BQ-5885-01A-11D-1589-08 TCGA-BQ-5885-11A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fefc32ae-2b8e-46c8-8a7b-d536f9c71568 762ffc49-9149-4ea9-9dce-33e726dee43d . TEX19 NM_207459 exon2 c.C400A p.L134M CTGGGCCTGGGCC . 202.0 78.0 178.0 0.0 . 17 . . . none . . PASS Atlas-SNP PSMA8 143471 hgsc.bcm.edu hg19 18 23731852 23731852 + Missense_Mutation SNP A A G novel TCGA-BQ-5885-01A-11D-1589-08 TCGA-BQ-5885-11A-01D-1589-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fefc32ae-2b8e-46c8-8a7b-d536f9c71568 762ffc49-9149-4ea9-9dce-33e726dee43d . PSMA8 NM_144662 exon3 c.A278G p.N93S TAATAAACAGAGC . 116.0 39.0 130.0 0.0 . 36 . . . none . . PASS Atlas-SNP ZNF57 126295 hgsc.bcm.edu hg19 19 2917763 2917763 + Missense_Mutation SNP C C T novel TCGA-BQ-5885-01A-11D-1589-08 TCGA-BQ-5885-11A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fefc32ae-2b8e-46c8-8a7b-d536f9c71568 762ffc49-9149-4ea9-9dce-33e726dee43d . ZNF57 NM_173480 exon4 c.C1144T p.H382Y AGAGAACATGTGA . 134.0 52.0 156.0 0.0 . 57 . . . none . . PASS Atlas-SNP ZNF846 162993 hgsc.bcm.edu hg19 19 9868191 9868191 + Missense_Mutation SNP A A G novel TCGA-BQ-5885-01A-11D-1589-08 TCGA-BQ-5885-11A-01D-1589-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fefc32ae-2b8e-46c8-8a7b-d536f9c71568 762ffc49-9149-4ea9-9dce-33e726dee43d . ZNF846 NM_001077624 exon6 c.T1562C p.L521P TTAGCAAGTGCTG . 279.0 100.0 317.0 0.0 . 61 . . . none . . PASS Atlas-SNP GATAD2A 54815 hgsc.bcm.edu hg19 19 19603133 19603133 + Missense_Mutation SNP G G T novel TCGA-BQ-5885-01A-11D-1589-08 TCGA-BQ-5885-11A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fefc32ae-2b8e-46c8-8a7b-d536f9c71568 762ffc49-9149-4ea9-9dce-33e726dee43d . GATAD2A NM_017660 exon3 c.G288T p.R96S CGAGAGGAGACCC . 17.0 9.0 15.0 0.0 . 81 . . . none . . PASS Atlas-SNP PAK4 10298 hgsc.bcm.edu hg19 19 39667267 39667267 + Missense_Mutation SNP G G T novel TCGA-BQ-5885-01A-11D-1589-08 TCGA-BQ-5885-11A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fefc32ae-2b8e-46c8-8a7b-d536f9c71568 762ffc49-9149-4ea9-9dce-33e726dee43d . PAK4 NM_001014832 exon7 c.G1397T p.S466I AGGTGAGCAAGGA . 225.0 94.0 367.0 0.0 . 40 . . . none . . PASS Atlas-SNP SIRPB1 10326 hgsc.bcm.edu hg19 20 1551504 1551504 + Missense_Mutation SNP T T A novel TCGA-BQ-5885-01A-11D-1589-08 TCGA-BQ-5885-11A-01D-1589-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fefc32ae-2b8e-46c8-8a7b-d536f9c71568 762ffc49-9149-4ea9-9dce-33e726dee43d . SIRPB1 NM_006065 exon4 c.A1031T p.Y344F AGGGCATAGCTTT . 201.0 78.0 274.0 0.0 . 83 . . . none . . PASS Atlas-SNP SF3A1 10291 hgsc.bcm.edu hg19 22 30737847 30737847 + Missense_Mutation SNP T T A novel TCGA-BQ-5885-01A-11D-1589-08 TCGA-BQ-5885-11A-01D-1589-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fefc32ae-2b8e-46c8-8a7b-d536f9c71568 762ffc49-9149-4ea9-9dce-33e726dee43d . SF3A1 NM_005877 exon7 c.A905T p.E302V AGCTCCTCTGGCG . 104.0 31.0 113.0 0.0 . 61 . . . none . . PASS Atlas-SNP APOBEC3G 60489 hgsc.bcm.edu hg19 22 39482535 39482535 + Silent SNP C C G rs138907659 alternate_allele TCGA-BQ-5885-01A-11D-1589-08 TCGA-BQ-5885-11A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fefc32ae-2b8e-46c8-8a7b-d536f9c71568 762ffc49-9149-4ea9-9dce-33e726dee43d . APOBEC3G NM_021822 exon6 c.C987G p.A329A CCTGGCCGAGGCT . 206.0 59.0 319.0 0.0 . 69 . . . alt C|1.000;T|0.000 . PASS Atlas-SNP AGTR2 186 hgsc.bcm.edu hg19 X 115303624 115303624 + Missense_Mutation SNP T T G novel TCGA-BQ-5885-01A-11D-1589-08 TCGA-BQ-5885-11A-01D-1589-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fefc32ae-2b8e-46c8-8a7b-d536f9c71568 762ffc49-9149-4ea9-9dce-33e726dee43d . AGTR2 NM_000686 exon3 c.T91G p.S31A AATGAGTCTACCT . 98.0 63.0 104.0 0.0 . 62 . . . none . . PASS Atlas-SNP ATP8 0 hgsc.bcm.edu hg19 MT 8538 8538 + Missense_Mutation SNP T T C novel TCGA-BQ-5885-01A-11D-1589-08 TCGA-BQ-5885-11A-01D-1589-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fefc32ae-2b8e-46c8-8a7b-d536f9c71568 762ffc49-9149-4ea9-9dce-33e726dee43d . . ENST00000361851 exon1 c.T173C p.I58T CGAAAATCTGTTC . 19.0 4.0 32.0 0.0 . . . . . none . . PASS Atlas-SNP USP34 9736 hgsc.bcm.edu hg19 2 61505306 61505306 + Frame_Shift_Del DEL T T - novel TCGA-BQ-5885-01A-11D-1589-08 TCGA-BQ-5885-11A-01D-1589-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fefc32ae-2b8e-46c8-8a7b-d536f9c71568 762ffc49-9149-4ea9-9dce-33e726dee43d . USP34 NM_014709 exon41 c.5428delG p.G1810fs . . 38.0 12.0 69.0 0.0 . 334 . 0.315789 0 none . . PASS Atlas-INDEL EPHA4 2043 hgsc.bcm.edu hg19 2 222365873 222365873 + Frame_Shift_Del DEL G G - novel TCGA-BQ-5885-01A-11D-1589-08 TCGA-BQ-5885-11A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fefc32ae-2b8e-46c8-8a7b-d536f9c71568 762ffc49-9149-4ea9-9dce-33e726dee43d . EPHA4 NM_004438 exon4 c.844delA p.K282fs . . 92.0 57.0 65.0 0.0 . 263 . 0.619565 0 none . . PASS Atlas-INDEL SYBU 55638 hgsc.bcm.edu hg19 8 110587763 110587763 + Frame_Shift_Del DEL T T - novel TCGA-BQ-5885-01A-11D-1589-08 TCGA-BQ-5885-11A-01D-1589-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fefc32ae-2b8e-46c8-8a7b-d536f9c71568 762ffc49-9149-4ea9-9dce-33e726dee43d SYBU,NS,carcinoma,0,1 SYBU NM_001099752 exon8 c.1365delC p.D455fs . . 122.0 40.0 109.0 0.0 . 71 . 0.327869 0 none . . PASS Atlas-INDEL DENND5B 160518 hgsc.bcm.edu hg19 12 31586129 31586130 + In_Frame_Ins INS - - GGCGAA novel TCGA-BQ-5885-01A-11D-1589-08 TCGA-BQ-5885-11A-01D-1589-08 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fefc32ae-2b8e-46c8-8a7b-d536f9c71568 762ffc49-9149-4ea9-9dce-33e726dee43d . DENND5B NM_144973 exon8 c.2066_2067insTTCGCC p.Q689delinsLRQ . . 188.0 25.0 254.0 0.0 . 114 . 0.132979 0 none . . PASS Atlas-INDEL ZNF502 91392 hgsc.bcm.edu hg19 3 44762384 44762384 + Frame_Shift_Del DEL G G - novel TCGA-BQ-5885-01A-11D-1589-08 TCGA-BQ-5885-11A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fefc32ae-2b8e-46c8-8a7b-d536f9c71568 762ffc49-9149-4ea9-9dce-33e726dee43d . ZNF502 NM_033210 exon4 c.74delA p.K25fs . . 115.0 33.0 142.0 0.0 . 58 . 0.286957 0 none . . PASS Atlas-INDEL ADAMDEC1 27299 hgsc.bcm.edu hg19 8 24256052 24256052 + Frame_Shift_Del DEL C C - novel TCGA-BQ-5885-01A-11D-1589-08 TCGA-BQ-5885-11A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fefc32ae-2b8e-46c8-8a7b-d536f9c71568 762ffc49-9149-4ea9-9dce-33e726dee43d ADAMDEC1_ENST00000256412,NS,malignant_melanoma,0,1 ADAMDEC1 NM_014479 exon8 c.749delA p.N250fs . . 165.0 55.0 186.0 0.0 . 69 . 0.333333 0 none . . PASS Atlas-INDEL JMJD1C 221037 hgsc.bcm.edu hg19 10 64960365 64960365 + Frame_Shift_Del DEL A A - novel TCGA-BQ-5885-01A-11D-1589-08 TCGA-BQ-5885-11A-01D-1589-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fefc32ae-2b8e-46c8-8a7b-d536f9c71568 762ffc49-9149-4ea9-9dce-33e726dee43d . JMJD1C NM_032776 exon11 c.5148delA p.L1716fs . . 89.0 32.0 91.0 0.0 . 347 . 0.359551 0 none . . PASS Atlas-INDEL FAT1 2195 hgsc.bcm.edu hg19 4 187540288 187540291 + Frame_Shift_Del DEL TCCA TCCA - novel TCGA-BQ-5885-01A-11D-1589-08 TCGA-BQ-5885-11A-01D-1589-08 TCCA TCCA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fefc32ae-2b8e-46c8-8a7b-d536f9c71568 762ffc49-9149-4ea9-9dce-33e726dee43d . FAT1 NM_005245 exon10 c.7450_7453del p.2484_2485del . . 385.0 90.0 443.0 0.0 . 500 . 0.233766 0 none . . PASS Atlas-INDEL DMTF1 9988 hgsc.bcm.edu hg19 7 86802963 86802966 + Frame_Shift_Del DEL AAGG AAGG - novel TCGA-BQ-5885-01A-11D-1589-08 TCGA-BQ-5885-11A-01D-1589-08 AAGG AAGG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fefc32ae-2b8e-46c8-8a7b-d536f9c71568 762ffc49-9149-4ea9-9dce-33e726dee43d . DMTF1 NM_001142327 exon6 c.439_442del p.147_148del . . 53.0 12.0 74.0 0.0 . 48 . 0.226415 0 none . . PASS Atlas-INDEL