Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq TVarRat NVarRat dbSNP_Strength dbSNP_AF dbSNP_PopFreq Confidence Algorithm OR2M7 391196 hgsc.bcm.edu hg19 1 248487257 248487257 + Missense_Mutation SNP A A C rs144715512 byfrequency;alternate_allele TCGA-B9-4117-01A-01D-1252-08 TCGA-B9-4117-10A-01D-1252-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 022fd0e9-aeef-4d27-a58a-66acca664e1d 1dfccb8c-84c0-4831-983e-08d93bf00ad4 OR2M7,NS,carcinoma,0,1 OR2M7 NM_001004691 exon1 c.T614G p.V205G AGCATTACTATAC . 50.0 2.0 299.0 1.0 . 84 . . . alt A|1.000;G|0.000 . PASS Atlas-SNP TMEM214 54867 hgsc.bcm.edu hg19 2 27259433 27259433 + Missense_Mutation SNP T T G novel TCGA-B9-4117-01A-01D-1252-08 TCGA-B9-4117-10A-01D-1252-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 022fd0e9-aeef-4d27-a58a-66acca664e1d 1dfccb8c-84c0-4831-983e-08d93bf00ad4 . TMEM214 NM_017727 exon6 c.T799G p.F267V GCAGGTTTTGCCA . 611.0 177.0 124.0 0.0 . 41 . . . none . . PASS Atlas-SNP CGREF1 10669 hgsc.bcm.edu hg19 2 27327221 27327221 + Missense_Mutation SNP G G T rs112618911 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-B9-4117-01A-01D-1252-08 TCGA-B9-4117-10A-01D-1252-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 022fd0e9-aeef-4d27-a58a-66acca664e1d 1dfccb8c-84c0-4831-983e-08d93bf00ad4 . CGREF1 NM_001166239 exon2 c.C14A p.T5K GTCATCGTCAAAG . 149.0 38.0 37.0 0.0 . 31 . . . alt G|0.998;A|0.002 . PASS Atlas-SNP CEBPZ 10153 hgsc.bcm.edu hg19 2 37454852 37454852 + Missense_Mutation SNP G G A novel TCGA-B9-4117-01A-01D-1252-08 TCGA-B9-4117-10A-01D-1252-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 022fd0e9-aeef-4d27-a58a-66acca664e1d 1dfccb8c-84c0-4831-983e-08d93bf00ad4 . CEBPZ NM_005760 exon2 c.C1484T p.P495L GAATAAGGGTATG . 34.0 20.0 69.0 0.0 . 68 . . . none . . PASS Atlas-SNP GPR45 11250 hgsc.bcm.edu hg19 2 105858582 105858582 + Silent SNP C C G novel TCGA-B9-4117-01A-01D-1252-08 TCGA-B9-4117-10A-01D-1252-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 022fd0e9-aeef-4d27-a58a-66acca664e1d 1dfccb8c-84c0-4831-983e-08d93bf00ad4 . GPR45 NM_007227 exon1 c.C267G p.P89P CATGCCCTTCACC . 527.0 245.0 151.0 0.0 . 73 . . . none . . PASS Atlas-SNP TFCP2L1 29842 hgsc.bcm.edu hg19 2 122042681 122042681 + Missense_Mutation SNP A A T novel TCGA-B9-4117-01A-01D-1252-08 TCGA-B9-4117-10A-01D-1252-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 022fd0e9-aeef-4d27-a58a-66acca664e1d 1dfccb8c-84c0-4831-983e-08d93bf00ad4 . TFCP2L1 NM_014553 exon1 c.T5A p.L2H CAGAAGAGCATGG . 31.0 19.0 14.0 0.0 . 54 . . . none . . PASS Atlas-SNP ALS2 57679 hgsc.bcm.edu hg19 2 202626257 202626257 + Nonsense_Mutation SNP G G A novel TCGA-B9-4117-01A-01D-1252-08 TCGA-B9-4117-10A-01D-1252-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 022fd0e9-aeef-4d27-a58a-66acca664e1d 1dfccb8c-84c0-4831-983e-08d93bf00ad4 . ALS2 NM_001135745 exon4 c.C460T p.Q154X CCAACTGTAAAAT . 121.0 55.0 50.0 0.0 . 172 . . . none . . PASS Atlas-SNP CIDEC 63924 hgsc.bcm.edu hg19 3 9911862 9911862 + Missense_Mutation SNP G G C rs201802471 TCGA-B9-4117-01A-01D-1252-08 TCGA-B9-4117-10A-01D-1252-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 022fd0e9-aeef-4d27-a58a-66acca664e1d 1dfccb8c-84c0-4831-983e-08d93bf00ad4 .,1 CIDEC NM_001199623 exon4 c.C391G p.P131A ATGGGGGCTGCCA . 367.0 90.0 114.0 0.0 . 22 . . . weak G|0.999;C|0.001 0.001 PASS Atlas-SNP DTX3L 151636 hgsc.bcm.edu hg19 3 122283388 122283388 + Missense_Mutation SNP G G T novel TCGA-B9-4117-01A-01D-1252-08 TCGA-B9-4117-10A-01D-1252-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 022fd0e9-aeef-4d27-a58a-66acca664e1d 1dfccb8c-84c0-4831-983e-08d93bf00ad4 . DTX3L NM_138287 exon1 c.G115T p.G39W GGCGGCGGGGAGT . 365.0 62.0 115.0 0.0 . 59 . . . none . . PASS Atlas-SNP FAM43A 131583 hgsc.bcm.edu hg19 3 194408136 194408136 + Missense_Mutation SNP A A G novel TCGA-B9-4117-01A-01D-1252-08 TCGA-B9-4117-10A-01D-1252-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 022fd0e9-aeef-4d27-a58a-66acca664e1d 1dfccb8c-84c0-4831-983e-08d93bf00ad4 . FAM43A NM_153690 exon1 c.A581G p.N194S CGGCCAACGCGCT . 24.0 5.0 0.0 0.0 . 24 . . . none . . PASS Atlas-SNP PDCD6 10016 hgsc.bcm.edu hg19 5 311485 311485 + Missense_Mutation SNP G G A rs368897410 TCGA-B9-4117-01A-01D-1252-08 TCGA-B9-4117-10A-01D-1252-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 022fd0e9-aeef-4d27-a58a-66acca664e1d 1dfccb8c-84c0-4831-983e-08d93bf00ad4 . PDCD6 NM_013232 exon5 c.G445A p.D149N GCCTTCGACGACT . 163.0 44.0 37.0 0.0 . 24 . . . weak . . PASS Atlas-SNP NSUN2 54888 hgsc.bcm.edu hg19 5 6616902 6616902 + Missense_Mutation SNP G G T rs138724893 alternate_allele TCGA-B9-4117-01A-01D-1252-08 TCGA-B9-4117-10A-01D-1252-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 022fd0e9-aeef-4d27-a58a-66acca664e1d 1dfccb8c-84c0-4831-983e-08d93bf00ad4 NSUN2,NS,carcinoma,0,1 NSUN2 NM_017755 exon9 c.C959A p.T320K GAACACGTGGAAT . 86.0 38.0 68.0 0.0 . 82 . . . alt G|1.000;A|0.000 . PASS Atlas-SNP MEGF10 84466 hgsc.bcm.edu hg19 5 126753406 126753406 + Missense_Mutation SNP G G A novel TCGA-B9-4117-01A-01D-1252-08 TCGA-B9-4117-10A-01D-1252-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 022fd0e9-aeef-4d27-a58a-66acca664e1d 1dfccb8c-84c0-4831-983e-08d93bf00ad4 . MEGF10 NM_032446 exon11 c.G1207A p.G403R TCTCCTGGATTCT . 106.0 49.0 45.0 0.0 . 152 . . . none . . PASS Atlas-SNP TCERG1 10915 hgsc.bcm.edu hg19 5 145838701 145838701 + Silent SNP T T C novel TCGA-B9-4117-01A-01D-1252-08 TCGA-B9-4117-10A-01D-1252-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 022fd0e9-aeef-4d27-a58a-66acca664e1d 1dfccb8c-84c0-4831-983e-08d93bf00ad4 TCERG1,NS,carcinoma,0,2 TCERG1 NM_006706 exon4 c.T693C p.A231A TCAGGCTCAGGCA . 129.0 8.0 39.0 0.0 . 148 . . . none . . PASS Atlas-SNP TFAP2A 7020 hgsc.bcm.edu hg19 6 10398708 10398708 + Missense_Mutation SNP T T G rs201591227 TCGA-B9-4117-01A-01D-1252-08 TCGA-B9-4117-10A-01D-1252-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 022fd0e9-aeef-4d27-a58a-66acca664e1d 1dfccb8c-84c0-4831-983e-08d93bf00ad4 . TFAP2A NM_003220 exon7 c.A1256C p.N419T TGGCTGTTGGGGT . 1832.0 626.0 715.0 1.0 . 129 . . . weak . . PASS Atlas-SNP CAP2 10486 hgsc.bcm.edu hg19 6 17507928 17507928 + Silent SNP T T C novel TCGA-B9-4117-01A-01D-1252-08 TCGA-B9-4117-10A-01D-1252-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 022fd0e9-aeef-4d27-a58a-66acca664e1d 1dfccb8c-84c0-4831-983e-08d93bf00ad4 . CAP2 NM_006366 exon6 c.T501C p.T167T TTACACTAACAGG . 132.0 50.0 143.0 0.0 . 61 . . . none . . PASS Atlas-SNP HIST1H1C 3006 hgsc.bcm.edu hg19 6 26056427 26056427 + Missense_Mutation SNP T T G rs182693914 bycluster TCGA-B9-4117-01A-01D-1252-08 TCGA-B9-4117-10A-01D-1252-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 022fd0e9-aeef-4d27-a58a-66acca664e1d 1dfccb8c-84c0-4831-983e-08d93bf00ad4 HIST1H1C,NS,carcinoma,0,1 HIST1H1C NM_005319 exon1 c.A230C p.N77T CGGCTGTTGTTTT . 476.0 201.0 162.0 2.0 . 80 . . . weak . . PASS Atlas-SNP CAV2 858 hgsc.bcm.edu hg19 7 116140377 116140377 + Missense_Mutation SNP T T A novel TCGA-B9-4117-01A-01D-1252-08 TCGA-B9-4117-10A-01D-1252-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 022fd0e9-aeef-4d27-a58a-66acca664e1d 1dfccb8c-84c0-4831-983e-08d93bf00ad4 . CAV2 NM_001233 exon2 c.T214A p.C72S TGGATCTGCAGCC . 348.0 92.0 69.0 0.0 . 10 . . . none . . PASS Atlas-SNP DPYSL2 1808 hgsc.bcm.edu hg19 8 26505196 26505196 + Missense_Mutation SNP T T A novel TCGA-B9-4117-01A-01D-1252-08 TCGA-B9-4117-10A-01D-1252-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 022fd0e9-aeef-4d27-a58a-66acca664e1d 1dfccb8c-84c0-4831-983e-08d93bf00ad4 . DPYSL2 NM_001197293 exon11 c.T1476A p.N492K CACCAATGCAGCC . 190.0 118.0 106.0 0.0 . 49 . . . none . . PASS Atlas-SNP TLN1 7094 hgsc.bcm.edu hg19 9 35711016 35711016 + Silent SNP C C T novel TCGA-B9-4117-01A-01D-1252-08 TCGA-B9-4117-10A-01D-1252-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 022fd0e9-aeef-4d27-a58a-66acca664e1d 1dfccb8c-84c0-4831-983e-08d93bf00ad4 . TLN1 NM_006289 exon31 c.G4083A p.K1361K ACACTCCTTCTGG . 184.0 49.0 49.0 0.0 . 185 . . . none . . PASS Atlas-SNP ZCCHC6 79670 hgsc.bcm.edu hg19 9 88940291 88940291 + Missense_Mutation SNP G G C novel TCGA-B9-4117-01A-01D-1252-08 TCGA-B9-4117-10A-01D-1252-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 022fd0e9-aeef-4d27-a58a-66acca664e1d 1dfccb8c-84c0-4831-983e-08d93bf00ad4 . ZCCHC6 NM_024617 exon12 c.C1747G p.R583G ATTCCCGAGATAC . 34.0 12.0 81.0 0.0 . 105 . . . none . . PASS Atlas-SNP ANK3 288 hgsc.bcm.edu hg19 10 61819138 61819138 + Missense_Mutation SNP G G C novel TCGA-B9-4117-01A-01D-1252-08 TCGA-B9-4117-10A-01D-1252-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 022fd0e9-aeef-4d27-a58a-66acca664e1d 1dfccb8c-84c0-4831-983e-08d93bf00ad4 ANK3_ENST00000355288,colon,carcinoma,0,2 ANK3 NM_020987 exon41 c.C12646G p.R4216G CTCTTCGAGCTTG . 39.0 2.0 139.0 0.0 . 703 . . . none . . PASS Atlas-SNP SEC31B 25956 hgsc.bcm.edu hg19 10 102255181 102255181 + Missense_Mutation SNP C C G novel TCGA-B9-4117-01A-01D-1252-08 TCGA-B9-4117-10A-01D-1252-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 022fd0e9-aeef-4d27-a58a-66acca664e1d 1dfccb8c-84c0-4831-983e-08d93bf00ad4 . SEC31B NM_015490 exon19 c.G2433C p.E811D TGATGTCTCTTTA . 33.0 17.0 40.0 0.0 . 84 . . . none . . PASS Atlas-SNP DCLRE1A 9937 hgsc.bcm.edu hg19 10 115608965 115608965 + Silent SNP A A G novel TCGA-B9-4117-01A-01D-1252-08 TCGA-B9-4117-10A-01D-1252-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 022fd0e9-aeef-4d27-a58a-66acca664e1d 1dfccb8c-84c0-4831-983e-08d93bf00ad4 . DCLRE1A NM_014881 exon2 c.T1899C p.R633R TTTTTGACGCTGT . 225.0 84.0 145.0 0.0 . 80 . . . none . . PASS Atlas-SNP SLC43A3 29015 hgsc.bcm.edu hg19 11 57188512 57188512 + Missense_Mutation SNP C C T rs148055054 TCGA-B9-4117-01A-01D-1252-08 TCGA-B9-4117-10A-01D-1252-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 022fd0e9-aeef-4d27-a58a-66acca664e1d 1dfccb8c-84c0-4831-983e-08d93bf00ad4 . SLC43A3 NM_017611 exon7 c.G464A p.R155H GTCGAACGGTGTT . 91.0 35.0 63.0 0.0 . 54 . . . weak C|1.000;T|0.000 0.000 PASS Atlas-SNP TMPRSS13 84000 hgsc.bcm.edu hg19 11 117789447 117789447 + Missense_Mutation SNP T T C novel TCGA-B9-4117-01A-01D-1252-08 TCGA-B9-4117-10A-01D-1252-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 022fd0e9-aeef-4d27-a58a-66acca664e1d 1dfccb8c-84c0-4831-983e-08d93bf00ad4 . TMPRSS13 NM_001206790 exon2 c.A128G p.Q43R GATGCCTGGGCTG . 280.0 12.0 60.0 0.0 . 75 . . . none . . PASS Atlas-SNP ST3GAL4 6484 hgsc.bcm.edu hg19 11 126276866 126276866 + Missense_Mutation SNP G G C novel TCGA-B9-4117-01A-01D-1252-08 TCGA-B9-4117-10A-01D-1252-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 022fd0e9-aeef-4d27-a58a-66acca664e1d 1dfccb8c-84c0-4831-983e-08d93bf00ad4 . ST3GAL4 NM_001254757 exon4 c.G130C p.E44Q AAGAAGGAGCCGT . 419.0 165.0 94.0 0.0 . 25 . . . none . . PASS Atlas-SNP MYBPC1 4604 hgsc.bcm.edu hg19 12 102038482 102038482 + Missense_Mutation SNP A A T novel TCGA-B9-4117-01A-01D-1252-08 TCGA-B9-4117-10A-01D-1252-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 022fd0e9-aeef-4d27-a58a-66acca664e1d 1dfccb8c-84c0-4831-983e-08d93bf00ad4 . MYBPC1 NM_206819 exon12 c.A873T p.K291N TGACAAAGGAGGC . 65.0 18.0 40.0 0.0 . 235 . . . none . . PASS Atlas-SNP ACAD10 80724 hgsc.bcm.edu hg19 12 112174685 112174685 + Missense_Mutation SNP T T A novel TCGA-B9-4117-01A-01D-1252-08 TCGA-B9-4117-10A-01D-1252-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 022fd0e9-aeef-4d27-a58a-66acca664e1d 1dfccb8c-84c0-4831-983e-08d93bf00ad4 . ACAD10 NM_001136538 exon13 c.T1684A p.Y562N GAGGAGTATTTCA . 132.0 50.0 44.0 0.0 . 93 . . . none . . PASS Atlas-SNP EP400 57634 hgsc.bcm.edu hg19 12 132551479 132551479 + Missense_Mutation SNP T T A novel TCGA-B9-4117-01A-01D-1252-08 TCGA-B9-4117-10A-01D-1252-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 022fd0e9-aeef-4d27-a58a-66acca664e1d 1dfccb8c-84c0-4831-983e-08d93bf00ad4 . EP400 NM_015409 exon49 c.T8714A p.I2905N CGGGGATCAGCGT . 89.0 35.0 47.0 0.0 . 370 . . . none . . PASS Atlas-SNP IFT88 8100 hgsc.bcm.edu hg19 13 21189985 21189985 + Missense_Mutation SNP T T G novel TCGA-B9-4117-01A-01D-1252-08 TCGA-B9-4117-10A-01D-1252-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 022fd0e9-aeef-4d27-a58a-66acca664e1d 1dfccb8c-84c0-4831-983e-08d93bf00ad4 . IFT88 NM_175605 exon16 c.T1193G p.V398G CTCCTGTAATTGA . 181.0 63.0 62.0 0.0 . 83 . . . none . . PASS Atlas-SNP IFT88 8100 hgsc.bcm.edu hg19 13 21189988 21189988 + Missense_Mutation SNP T T A novel TCGA-B9-4117-01A-01D-1252-08 TCGA-B9-4117-10A-01D-1252-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 022fd0e9-aeef-4d27-a58a-66acca664e1d 1dfccb8c-84c0-4831-983e-08d93bf00ad4 . IFT88 NM_175605 exon16 c.T1196A p.I399N CTGTAATTGAAAC . 180.0 60.0 61.0 0.0 . 83 . . . none . . PASS Atlas-SNP CLMN 79789 hgsc.bcm.edu hg19 14 95669398 95669398 + Missense_Mutation SNP T T C novel TCGA-B9-4117-01A-01D-1252-08 TCGA-B9-4117-10A-01D-1252-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 022fd0e9-aeef-4d27-a58a-66acca664e1d 1dfccb8c-84c0-4831-983e-08d93bf00ad4 . CLMN NM_024734 exon9 c.A2288G p.Y763C GGCATATAGCCCT . 206.0 84.0 20.0 0.0 . 103 . . . none . . PASS Atlas-SNP FBXO22 26263 hgsc.bcm.edu hg19 15 76196905 76196905 + Missense_Mutation SNP G G A novel TCGA-B9-4117-01A-01D-1252-08 TCGA-B9-4117-10A-01D-1252-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 022fd0e9-aeef-4d27-a58a-66acca664e1d 1dfccb8c-84c0-4831-983e-08d93bf00ad4 . FBXO22 NM_012170 exon2 c.G214A p.G72S TCCGCAGGCCTGG . 305.0 92.0 129.0 0.0 . 60 . . . none . . PASS Atlas-SNP CREBBP 1387 hgsc.bcm.edu hg19 16 3808859 3808859 + Missense_Mutation SNP A A G novel TCGA-B9-4117-01A-01D-1252-08 TCGA-B9-4117-10A-01D-1252-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 022fd0e9-aeef-4d27-a58a-66acca664e1d 1dfccb8c-84c0-4831-983e-08d93bf00ad4 . CREBBP NM_004380 exon17 c.T3365C p.I1122T ACTGGAATTCCGA . 62.0 14.0 64.0 0.0 . 546 . . . none . . PASS Atlas-SNP HERPUD1 9709 hgsc.bcm.edu hg19 16 56970652 56970652 + Missense_Mutation SNP G G T novel TCGA-B9-4117-01A-01D-1252-08 TCGA-B9-4117-10A-01D-1252-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 022fd0e9-aeef-4d27-a58a-66acca664e1d 1dfccb8c-84c0-4831-983e-08d93bf00ad4 . HERPUD1 NM_014685 exon4 c.G354T p.E118D TCCTGAGGATTCC . 77.0 41.0 85.0 0.0 . 28 . . . none . . PASS Atlas-SNP ZFHX3 463 hgsc.bcm.edu hg19 16 72984698 72984698 + Silent SNP G G A novel TCGA-B9-4117-01A-01D-1252-08 TCGA-B9-4117-10A-01D-1252-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 022fd0e9-aeef-4d27-a58a-66acca664e1d 1dfccb8c-84c0-4831-983e-08d93bf00ad4 . ZFHX3 NM_006885 exon3 c.C2886T p.G962G GTGCAGGCCCAGC . 260.0 65.0 38.0 0.0 . 404 . . . none . . PASS Atlas-SNP USP6 9098 hgsc.bcm.edu hg19 17 5042939 5042939 + Missense_Mutation SNP A A C novel TCGA-B9-4117-01A-01D-1252-08 TCGA-B9-4117-10A-01D-1252-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 022fd0e9-aeef-4d27-a58a-66acca664e1d 1dfccb8c-84c0-4831-983e-08d93bf00ad4 . USP6 NM_004505 exon14 c.A1468C p.T490P CTGGCCACCTGCT . 325.0 20.0 66.0 0.0 . 213 . . . none . . PASS Atlas-SNP PER1 5187 hgsc.bcm.edu hg19 17 8047043 8047043 + Silent SNP T T G novel TCGA-B9-4117-01A-01D-1252-08 TCGA-B9-4117-10A-01D-1252-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 022fd0e9-aeef-4d27-a58a-66acca664e1d 1dfccb8c-84c0-4831-983e-08d93bf00ad4 PER1,NS,carcinoma,0,1 PER1 NM_002616 exon19 c.A2613C p.P871P GGCTGGTGGGGTG . 52.0 29.0 11.0 1.0 . 104 . . . none . . PASS Atlas-SNP KRTAP4-6 81871 hgsc.bcm.edu hg19 17 39296395 39296395 + Silent SNP A A G novel TCGA-B9-4117-01A-01D-1252-08 TCGA-B9-4117-10A-01D-1252-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 022fd0e9-aeef-4d27-a58a-66acca664e1d 1dfccb8c-84c0-4831-983e-08d93bf00ad4 . KRTAP4-6 NM_030976 exon1 c.T345C p.C115C GGGGCGACAGCAG . 187.0 11.0 51.0 0.0 . 46 . . . none . . PASS Atlas-SNP KRTAP4-2 85291 hgsc.bcm.edu hg19 17 39334233 39334233 + Missense_Mutation SNP T T G novel TCGA-B9-4117-01A-01D-1252-08 TCGA-B9-4117-10A-01D-1252-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 022fd0e9-aeef-4d27-a58a-66acca664e1d 1dfccb8c-84c0-4831-983e-08d93bf00ad4 . KRTAP4-2 NM_033062 exon1 c.A184C p.S62R TGGGGCTGCAGCA . 477.0 30.0 123.0 0.0 . 93 . . . none . . PASS Atlas-SNP KRTAP4-1 85285 hgsc.bcm.edu hg19 17 39340878 39340878 + Missense_Mutation SNP T T G novel TCGA-B9-4117-01A-01D-1252-08 TCGA-B9-4117-10A-01D-1252-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 022fd0e9-aeef-4d27-a58a-66acca664e1d 1dfccb8c-84c0-4831-983e-08d93bf00ad4 . KRTAP4-1 NM_033060 exon1 c.A229C p.S77R CACAGCTGGGGCG . 197.0 9.0 104.0 0.0 . 58 . . . none . . PASS Atlas-SNP GHDC 84514 hgsc.bcm.edu hg19 17 40344945 40344945 + Missense_Mutation SNP G G T novel TCGA-B9-4117-01A-01D-1252-08 TCGA-B9-4117-10A-01D-1252-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 022fd0e9-aeef-4d27-a58a-66acca664e1d 1dfccb8c-84c0-4831-983e-08d93bf00ad4 . GHDC NM_001142623 exon4 c.C366A p.D122E CCCAAGGTCCTGG . 674.0 230.0 144.0 0.0 . 63 . . . none . . PASS Atlas-SNP ITGB4 3691 hgsc.bcm.edu hg19 17 73732406 73732406 + Missense_Mutation SNP G G C rs201929789 bycluster TCGA-B9-4117-01A-01D-1252-08 TCGA-B9-4117-10A-01D-1252-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 022fd0e9-aeef-4d27-a58a-66acca664e1d 1dfccb8c-84c0-4831-983e-08d93bf00ad4 ITGB4,colon,carcinoma,0,1 ITGB4 NM_001005731 exon15 c.G1799C p.R600P GTGGCCGCTGCCA . 385.0 151.0 123.0 0.0 . 165 . . . weak G|0.998;C|0.002 0.002 PASS Atlas-SNP FAM108A1 81926 hgsc.bcm.edu hg19 19 1881347 1881347 + Silent SNP A A G novel TCGA-B9-4117-01A-01D-1252-08 TCGA-B9-4117-10A-01D-1252-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 022fd0e9-aeef-4d27-a58a-66acca664e1d 1dfccb8c-84c0-4831-983e-08d93bf00ad4 FAM108A1,NS,carcinoma,0,1 FAM108A1 NM_031213 exon2 c.T219C p.R73R GTCGGCACGCTCC . 190.0 8.0 75.0 0.0 . 29 . . . none . . PASS Atlas-SNP PLEKHJ1 55111 hgsc.bcm.edu hg19 19 2234038 2234038 + Missense_Mutation SNP G G T novel TCGA-B9-4117-01A-01D-1252-08 TCGA-B9-4117-10A-01D-1252-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 022fd0e9-aeef-4d27-a58a-66acca664e1d 1dfccb8c-84c0-4831-983e-08d93bf00ad4 . PLEKHJ1 NM_018049 exon5 c.C343A p.L115I AGATGAGGCTTCT . 567.0 185.0 176.0 0.0 . 7 . . . none . . PASS Atlas-SNP KDM4B 23030 hgsc.bcm.edu hg19 19 5131903 5131903 + Silent SNP G G C novel TCGA-B9-4117-01A-01D-1252-08 TCGA-B9-4117-10A-01D-1252-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 022fd0e9-aeef-4d27-a58a-66acca664e1d 1dfccb8c-84c0-4831-983e-08d93bf00ad4 . KDM4B NM_015015 exon13 c.G1791C p.P597P GGCACCGTCCACA . 89.0 20.0 31.0 0.0 . 120 . . . none . . PASS Atlas-SNP MRI1 84245 hgsc.bcm.edu hg19 19 13875777 13875777 + Silent SNP C C T novel TCGA-B9-4117-01A-01D-1252-08 TCGA-B9-4117-10A-01D-1252-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 022fd0e9-aeef-4d27-a58a-66acca664e1d 1dfccb8c-84c0-4831-983e-08d93bf00ad4 . MRI1 NM_001031727 exon2 c.C225T p.L75L CGCGCTCGTGGCC . 8.0 6.0 0.0 0.0 . 35 . . . none . . PASS Atlas-SNP UBA2 10054 hgsc.bcm.edu hg19 19 34921484 34921484 + Missense_Mutation SNP G G C novel TCGA-B9-4117-01A-01D-1252-08 TCGA-B9-4117-10A-01D-1252-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 022fd0e9-aeef-4d27-a58a-66acca664e1d 1dfccb8c-84c0-4831-983e-08d93bf00ad4 . UBA2 NM_005499 exon2 c.G142C p.D48H TAGATTGATCTGG . 152.0 52.0 95.0 0.0 . 53 . . . none . . PASS Atlas-SNP RYR1 6261 hgsc.bcm.edu hg19 19 39039030 39039030 + Silent SNP T T C novel TCGA-B9-4117-01A-01D-1252-08 TCGA-B9-4117-10A-01D-1252-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 022fd0e9-aeef-4d27-a58a-66acca664e1d 1dfccb8c-84c0-4831-983e-08d93bf00ad4 . RYR1 NM_000540 exon89 c.T12252C p.R4084R TCCCCGTGGCCTC . 299.0 101.0 99.0 0.0 . 708 . . . none . . PASS Atlas-SNP FCGBP 8857 hgsc.bcm.edu hg19 19 40366038 40366038 + Silent SNP C C G novel TCGA-B9-4117-01A-01D-1252-08 TCGA-B9-4117-10A-01D-1252-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 022fd0e9-aeef-4d27-a58a-66acca664e1d 1dfccb8c-84c0-4831-983e-08d93bf00ad4 . FCGBP NM_003890 exon30 c.G14196C p.P4732P GAAGTCCGGCCGC . 205.0 59.0 164.0 0.0 . 416 . . . none . . PASS Atlas-SNP NUCB1 4924 hgsc.bcm.edu hg19 19 49422348 49422348 + Missense_Mutation SNP G G A novel TCGA-B9-4117-01A-01D-1252-08 TCGA-B9-4117-10A-01D-1252-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 022fd0e9-aeef-4d27-a58a-66acca664e1d 1dfccb8c-84c0-4831-983e-08d93bf00ad4 . NUCB1 NM_006184 exon9 c.G878A p.R293Q AGGAGCGACTGCG . 126.0 43.0 39.0 0.0 . 44 . . . none . . PASS Atlas-SNP ZNF665 79788 hgsc.bcm.edu hg19 19 53668284 53668284 + Nonsense_Mutation SNP T T A novel TCGA-B9-4117-01A-01D-1252-08 TCGA-B9-4117-10A-01D-1252-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 022fd0e9-aeef-4d27-a58a-66acca664e1d 1dfccb8c-84c0-4831-983e-08d93bf00ad4 . ZNF665 NM_024733 exon4 c.A1459T p.K487X CACACTTGTAAGG . 217.0 68.0 88.0 0.0 . 136 . . . none . . PASS Atlas-SNP LILRB2 10288 hgsc.bcm.edu hg19 19 54783677 54783677 + Silent SNP C C T novel TCGA-B9-4117-01A-01D-1252-08 TCGA-B9-4117-10A-01D-1252-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 022fd0e9-aeef-4d27-a58a-66acca664e1d 1dfccb8c-84c0-4831-983e-08d93bf00ad4 . LILRB2 NM_005874 exon4 c.G324A p.E108E ACTGAGCTCAGAC . 359.0 108.0 101.0 0.0 . 94 . . . none . . PASS Atlas-SNP ZNF71 58491 hgsc.bcm.edu hg19 19 57133670 57133670 + Missense_Mutation SNP T T G novel TCGA-B9-4117-01A-01D-1252-08 TCGA-B9-4117-10A-01D-1252-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 022fd0e9-aeef-4d27-a58a-66acca664e1d 1dfccb8c-84c0-4831-983e-08d93bf00ad4 ZNF71,NS,carcinoma,0,1 ZNF71 NM_021216 exon3 c.T1015G p.S339A CAGAGCTCCTACC . 180.0 9.0 127.0 0.0 . 69 . . . none . . PASS Atlas-SNP NF2 4771 hgsc.bcm.edu hg19 22 30000103 30000103 + Splice_Site SNP T T G novel TCGA-B9-4117-01A-01D-1252-08 TCGA-B9-4117-10A-01D-1252-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 022fd0e9-aeef-4d27-a58a-66acca664e1d 1dfccb8c-84c0-4831-983e-08d93bf00ad4 . NF2 NM_016418 exon1 c.114+2T>G . GCGAGGTAACCGG . 17.0 15.0 7.0 0.0 . 1312 . . . none . . PASS Atlas-SNP MAOA 4128 hgsc.bcm.edu hg19 X 43590945 43590945 + Missense_Mutation SNP A A C novel TCGA-B9-4117-01A-01D-1252-08 TCGA-B9-4117-10A-01D-1252-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 022fd0e9-aeef-4d27-a58a-66acca664e1d 1dfccb8c-84c0-4831-983e-08d93bf00ad4 . MAOA NM_000240 exon8 c.A800C p.K267T AGTGCAAATACGT . 95.0 30.0 82.0 0.0 . 48 . . . none . . PASS Atlas-SNP NOX1 27035 hgsc.bcm.edu hg19 X 100099033 100099033 + Missense_Mutation SNP T T C novel TCGA-B9-4117-01A-01D-1252-08 TCGA-B9-4117-10A-01D-1252-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 022fd0e9-aeef-4d27-a58a-66acca664e1d 1dfccb8c-84c0-4831-983e-08d93bf00ad4 . NOX1 NM_007052 exon13 c.A1603G p.T535A CCAAAGTCCGAGG . 34.0 13.0 20.0 0.0 . 79 . . . none . . PASS Atlas-SNP FLT4 2324 hgsc.bcm.edu hg19 5 180052935 180052936 + Frame_Shift_Ins INS - - G novel TCGA-B9-4117-01A-01D-1252-08 TCGA-B9-4117-10A-01D-1252-08 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 022fd0e9-aeef-4d27-a58a-66acca664e1d 1dfccb8c-84c0-4831-983e-08d93bf00ad4 . FLT4 NM_182925 exon10 c.1355_1356insC p.L452fs . . 323.0 30.0 69.0 0.0 . 356 . 0.0928793 0 none . . PASS Atlas-INDEL SCMH1 22955 hgsc.bcm.edu hg19 1 41579112 41579113 + Frame_Shift_Ins INS - - G novel TCGA-B9-4117-01A-01D-1252-08 TCGA-B9-4117-10A-01D-1252-08 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 022fd0e9-aeef-4d27-a58a-66acca664e1d 1dfccb8c-84c0-4831-983e-08d93bf00ad4 . SCMH1 NM_001172219 exon8 c.588_589insC p.P196fs . . 107.0 20.0 55.0 0.0 . 120 . 0.186916 0 none . . PASS Atlas-INDEL TMEM132E 124842 hgsc.bcm.edu hg19 17 32964849 32964850 + Frame_Shift_Ins INS - - C novel TCGA-B9-4117-01A-01D-1252-08 TCGA-B9-4117-10A-01D-1252-08 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 022fd0e9-aeef-4d27-a58a-66acca664e1d 1dfccb8c-84c0-4831-983e-08d93bf00ad4 . TMEM132E NM_207313 exon10 c.2553_2554insC p.G851fs . . 347.0 19.0 69.0 0.0 . 122 . 0.054755 0 none . . PASS Atlas-INDEL CTCFL 140690 hgsc.bcm.edu hg19 20 56098886 56098887 + Frame_Shift_Ins INS - - C novel TCGA-B9-4117-01A-01D-1252-08 TCGA-B9-4117-10A-01D-1252-08 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 022fd0e9-aeef-4d27-a58a-66acca664e1d 1dfccb8c-84c0-4831-983e-08d93bf00ad4 . CTCFL NM_001269044 exon1 c.376_377insG p.P126fs . . 415.0 24.0 119.0 0.0 . 97 . 0.0578313 0 none . . PASS Atlas-INDEL URGCP 55665 hgsc.bcm.edu hg19 7 43916495 43916495 + Frame_Shift_Del DEL C C - novel TCGA-B9-4117-01A-01D-1252-08 TCGA-B9-4117-10A-01D-1252-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 022fd0e9-aeef-4d27-a58a-66acca664e1d 1dfccb8c-84c0-4831-983e-08d93bf00ad4 . URGCP NM_001077663 exon6 c.2568delC p.G856fs . . 167.0 39.0 42.0 0.0 . 170 . 0.233533 0 none . . PASS Atlas-INDEL AHCY 191 hgsc.bcm.edu hg19 20 32868894 32868914 + In_Frame_Del DEL CTGGGCTTGCTTCTCAGTTAG CTGGGCTTGCTTCTCAGTTAG - novel TCGA-B9-4117-01A-01D-1252-08 TCGA-B9-4117-10A-01D-1252-08 CTGGGCTTGCTTCTCAGTTAG CTGGGCTTGCTTCTCAGTTAG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 022fd0e9-aeef-4d27-a58a-66acca664e1d 1dfccb8c-84c0-4831-983e-08d93bf00ad4 . AHCY NM_000687 exon10 c.1226_1246del p.409_416del . . 104.0 26.0 44.0 0.0 . 43 . 0.25 0 none . . PASS Atlas-INDEL