Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq TVarRat NVarRat dbSNP_Strength dbSNP_AF dbSNP_PopFreq Confidence Algorithm CLCN6 1185 hgsc.bcm.edu hg19 1 11888206 11888206 + Missense_Mutation SNP G G A novel TCGA-B9-4116-01A-01D-1252-08 TCGA-B9-4116-10A-01D-1252-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 847c8d58-eb11-487b-bc85-d58a4d47fae7 21d19fa5-2fc4-4abc-8810-947be94de078 . CLCN6 NM_001286 exon11 c.G884A p.R295H TCTTCCGTTCTGG . 990.0 54.0 636.0 0.0 . 77 . . . none . . PASS Atlas-SNP FGR 2268 hgsc.bcm.edu hg19 1 27943508 27943508 + Missense_Mutation SNP G G A novel TCGA-B9-4116-01A-01D-1252-08 TCGA-B9-4116-10A-01D-1252-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 847c8d58-eb11-487b-bc85-d58a4d47fae7 21d19fa5-2fc4-4abc-8810-947be94de078 . FGR NM_001042729 exon7 c.C542T p.S181F GACAGGGAGTAGG . 225.0 128.0 183.0 0.0 . 39 . . . none . . PASS Atlas-SNP PABPC4 8761 hgsc.bcm.edu hg19 1 40038244 40038244 + Missense_Mutation SNP C C A novel TCGA-B9-4116-01A-01D-1252-08 TCGA-B9-4116-10A-01D-1252-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 847c8d58-eb11-487b-bc85-d58a4d47fae7 21d19fa5-2fc4-4abc-8810-947be94de078 . PABPC4 NM_001135653 exon2 c.G208T p.D70Y TGGTGTCCAAAGC . 118.0 35.0 177.0 0.0 . 56 . . . none . . PASS Atlas-SNP CACNA1S 779 hgsc.bcm.edu hg19 1 201039482 201039482 + Missense_Mutation SNP G G A novel TCGA-B9-4116-01A-01D-1252-08 TCGA-B9-4116-10A-01D-1252-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 847c8d58-eb11-487b-bc85-d58a4d47fae7 21d19fa5-2fc4-4abc-8810-947be94de078 . CACNA1S NM_000069 exon17 c.C2278T p.P760S CCAGGGGACGTGG . 385.0 121.0 250.0 0.0 . 249 . . . none . . PASS Atlas-SNP MYCN 4613 hgsc.bcm.edu hg19 2 16086058 16086058 + Missense_Mutation SNP G G C novel TCGA-B9-4116-01A-01D-1252-08 TCGA-B9-4116-10A-01D-1252-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 847c8d58-eb11-487b-bc85-d58a4d47fae7 21d19fa5-2fc4-4abc-8810-947be94de078 . MYCN NM_005378 exon3 c.G1234C p.V412L GAGTTGGTAAAGA . 496.0 163.0 304.0 0.0 . 63 . . . none . . PASS Atlas-SNP C2orf80 389073 hgsc.bcm.edu hg19 2 209045533 209045533 + Missense_Mutation SNP A A C novel TCGA-B9-4116-01A-01D-1252-08 TCGA-B9-4116-10A-01D-1252-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 847c8d58-eb11-487b-bc85-d58a4d47fae7 21d19fa5-2fc4-4abc-8810-947be94de078 . C2orf80 NM_001099334 exon6 c.T302G p.I101S ATCGGGATACTGT . 86.0 26.0 133.0 0.0 . 19 . . . none . . PASS Atlas-SNP MON1A 84315 hgsc.bcm.edu hg19 3 49946456 49946456 + Silent SNP G G A novel TCGA-B9-4116-01A-01D-1252-08 TCGA-B9-4116-10A-01D-1252-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 847c8d58-eb11-487b-bc85-d58a4d47fae7 21d19fa5-2fc4-4abc-8810-947be94de078 . MON1A NM_032355 exon6 c.C1950T p.L650L ATAGGTGAGGGGC . 126.0 38.0 68.0 0.0 . 41 . . . none . . PASS Atlas-SNP TMF1 7110 hgsc.bcm.edu hg19 3 69096707 69096707 + Silent SNP T T C novel TCGA-B9-4116-01A-01D-1252-08 TCGA-B9-4116-10A-01D-1252-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 847c8d58-eb11-487b-bc85-d58a4d47fae7 21d19fa5-2fc4-4abc-8810-947be94de078 . TMF1 NM_007114 exon2 c.A1149G p.T383T AACTAATGTTTCA . 106.0 42.0 229.0 0.0 . 77 . . . none . . PASS Atlas-SNP ZBTB11 27107 hgsc.bcm.edu hg19 3 101370247 101370247 + Missense_Mutation SNP T T G rs374150569 alternate_allele TCGA-B9-4116-01A-01D-1252-08 TCGA-B9-4116-10A-01D-1252-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 847c8d58-eb11-487b-bc85-d58a4d47fae7 21d19fa5-2fc4-4abc-8810-947be94de078 . ZBTB11 NM_014415 exon11 c.A2925C p.Q975H GCTTTCTTGTTCC . 258.0 75.0 421.0 1.0 . 77 . . . alt . . PASS Atlas-SNP PVRL3 25945 hgsc.bcm.edu hg19 3 110830989 110830989 + Nonsense_Mutation SNP G G A novel TCGA-B9-4116-01A-01D-1252-08 TCGA-B9-4116-10A-01D-1252-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 847c8d58-eb11-487b-bc85-d58a4d47fae7 21d19fa5-2fc4-4abc-8810-947be94de078 . PVRL3 NM_001243286 exon2 c.G273A p.W91X TTCATGGGAGAAG . 13.0 4.0 178.0 0.0 . 78 . . . none . . PASS Atlas-SNP PIGZ 80235 hgsc.bcm.edu hg19 3 196675120 196675120 + Silent SNP A A T novel TCGA-B9-4116-01A-01D-1252-08 TCGA-B9-4116-10A-01D-1252-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 847c8d58-eb11-487b-bc85-d58a4d47fae7 21d19fa5-2fc4-4abc-8810-947be94de078 . PIGZ NM_025163 exon3 c.T648A p.L216L GCCTCCAAGAAGC . 271.0 114.0 139.0 0.0 . 34 . . . none . . PASS Atlas-SNP RFC1 5981 hgsc.bcm.edu hg19 4 39325032 39325032 + Silent SNP C C T novel TCGA-B9-4116-01A-01D-1252-08 TCGA-B9-4116-10A-01D-1252-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 847c8d58-eb11-487b-bc85-d58a4d47fae7 21d19fa5-2fc4-4abc-8810-947be94de078 . RFC1 NM_002913 exon7 c.G648A p.E216E CTGCCTCTCCAGC . 33.0 12.0 169.0 0.0 . 114 . . . none . . PASS Atlas-SNP UGT2B7 7364 hgsc.bcm.edu hg19 4 69968643 69968643 + Missense_Mutation SNP A A T novel TCGA-B9-4116-01A-01D-1252-08 TCGA-B9-4116-10A-01D-1252-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 847c8d58-eb11-487b-bc85-d58a4d47fae7 21d19fa5-2fc4-4abc-8810-947be94de078 . UGT2B7 NM_001074 exon3 c.A989T p.Q330L TGGCCCAGATCCC . 51.0 17.0 438.0 0.0 . 79 . . . none . . PASS Atlas-SNP ANTXR2 118429 hgsc.bcm.edu hg19 4 80992809 80992809 + Splice_Site SNP C C A novel TCGA-B9-4116-01A-01D-1252-08 TCGA-B9-4116-10A-01D-1252-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 847c8d58-eb11-487b-bc85-d58a4d47fae7 21d19fa5-2fc4-4abc-8810-947be94de078 . ANTXR2 NM_058172 exon3 c.153-1G>T . CCAGACCTGAAAG . 79.0 21.0 112.0 0.0 . 97 . . . none . . PASS Atlas-SNP STPG2 285555 hgsc.bcm.edu hg19 4 98865112 98865112 + Missense_Mutation SNP T T G novel TCGA-B9-4116-01A-01D-1252-08 TCGA-B9-4116-10A-01D-1252-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 847c8d58-eb11-487b-bc85-d58a4d47fae7 21d19fa5-2fc4-4abc-8810-947be94de078 . . NM_174952 exon8 c.A980C p.N327T GTCAAGTTAGGTA . 29.0 9.0 329.0 0.0 . . . . . none . . PASS Atlas-SNP NPY2R 4887 hgsc.bcm.edu hg19 4 156136059 156136059 + Missense_Mutation SNP T T G novel TCGA-B9-4116-01A-01D-1252-08 TCGA-B9-4116-10A-01D-1252-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 847c8d58-eb11-487b-bc85-d58a4d47fae7 21d19fa5-2fc4-4abc-8810-947be94de078 . NPY2R NM_000910 exon2 c.T968G p.L323R ATCCCCTTCTCTA . 247.0 84.0 159.0 0.0 . 87 . . . none . . PASS Atlas-SNP CDH9 1007 hgsc.bcm.edu hg19 5 26906161 26906161 + Missense_Mutation SNP C C T novel TCGA-B9-4116-01A-01D-1252-08 TCGA-B9-4116-10A-01D-1252-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 847c8d58-eb11-487b-bc85-d58a4d47fae7 21d19fa5-2fc4-4abc-8810-947be94de078 CDH9,NS,carcinoma,0,4 CDH9 NM_016279 exon5 c.G718A p.D240N CCATGTCTTTGGC . 54.0 12.0 282.0 0.0 . 305 . . . none . . PASS Atlas-SNP ANKHD1 54882 hgsc.bcm.edu hg19 5 139908303 139908303 + Missense_Mutation SNP G G C novel TCGA-B9-4116-01A-01D-1252-08 TCGA-B9-4116-10A-01D-1252-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 847c8d58-eb11-487b-bc85-d58a4d47fae7 21d19fa5-2fc4-4abc-8810-947be94de078 ANKHD1-EIF4EBP3,NS,carcinoma,0,2 ANKHD1 NM_017747 exon29 c.G5772C p.E1924D CTCAGAGTCTGCT . 54.0 4.0 159.0 0.0 . 233 . . . none . . PASS Atlas-SNP MED7 9443 hgsc.bcm.edu hg19 5 156565887 156565887 + Missense_Mutation SNP T T G novel TCGA-B9-4116-01A-01D-1252-08 TCGA-B9-4116-10A-01D-1252-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 847c8d58-eb11-487b-bc85-d58a4d47fae7 21d19fa5-2fc4-4abc-8810-947be94de078 . MED7 NM_001100816 exon2 c.A556C p.T186P GTTCAGTTTTTAC . 121.0 45.0 267.0 0.0 . 18 . . . none . . PASS Atlas-SNP SLC22A16 85413 hgsc.bcm.edu hg19 6 110757106 110757106 + Missense_Mutation SNP G G A novel TCGA-B9-4116-01A-01D-1252-08 TCGA-B9-4116-10A-01D-1252-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 847c8d58-eb11-487b-bc85-d58a4d47fae7 21d19fa5-2fc4-4abc-8810-947be94de078 . SLC22A16 NM_033125 exon6 c.C1370T p.A457V CCAAATGCTGCCC . 125.0 39.0 185.0 0.0 . 81 . . . none . . PASS Atlas-SNP SYNJ2 8871 hgsc.bcm.edu hg19 6 158449969 158449969 + Silent SNP A A T rs140060886 alternate_allele TCGA-B9-4116-01A-01D-1252-08 TCGA-B9-4116-10A-01D-1252-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 847c8d58-eb11-487b-bc85-d58a4d47fae7 21d19fa5-2fc4-4abc-8810-947be94de078 . SYNJ2 NM_003898 exon3 c.A396T p.S132S TTTCTCATGGCCA . 235.0 70.0 133.0 0.0 . 111 . . . alt A|1.000;G|0.000 . PASS Atlas-SNP NOD1 10392 hgsc.bcm.edu hg19 7 30475651 30475651 + Missense_Mutation SNP T T A novel TCGA-B9-4116-01A-01D-1252-08 TCGA-B9-4116-10A-01D-1252-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 847c8d58-eb11-487b-bc85-d58a4d47fae7 21d19fa5-2fc4-4abc-8810-947be94de078 . NOD1 NM_006092 exon11 c.A2584T p.R862W GGGCCCTCGCAAG . 173.0 52.0 123.0 0.0 . 79 . . . none . . PASS Atlas-SNP EIF4H 7458 hgsc.bcm.edu hg19 7 73601993 73601993 + Missense_Mutation SNP A A G novel TCGA-B9-4116-01A-01D-1252-08 TCGA-B9-4116-10A-01D-1252-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 847c8d58-eb11-487b-bc85-d58a4d47fae7 21d19fa5-2fc4-4abc-8810-947be94de078 . EIF4H NM_022170 exon2 c.A112G p.T38A TTGCCCACAGAGC . 422.0 133.0 296.0 0.0 . 19 . . . none . . PASS Atlas-SNP POR 5447 hgsc.bcm.edu hg19 7 75615481 75615481 + Missense_Mutation SNP A A G rs72557954 TCGA-B9-4116-01A-01D-1252-08 TCGA-B9-4116-10A-01D-1252-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 847c8d58-eb11-487b-bc85-d58a4d47fae7 21d19fa5-2fc4-4abc-8810-947be94de078 . POR NM_000941 exon15 c.A1820G p.Y607C AGGTCTACGTCCA . 41.0 19.0 28.0 0.0 . 46 . . . weak A|0.999;G|0.001 0.001 PASS Atlas-SNP BAIAP2L1 55971 hgsc.bcm.edu hg19 7 97933661 97933661 + Silent SNP G G A novel TCGA-B9-4116-01A-01D-1252-08 TCGA-B9-4116-10A-01D-1252-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 847c8d58-eb11-487b-bc85-d58a4d47fae7 21d19fa5-2fc4-4abc-8810-947be94de078 BAIAP2L1,NS,carcinoma,0,1 BAIAP2L1 NM_018842 exon12 c.C1269T p.T423T GTTCACGGTGCTG . 245.0 50.0 99.0 0.0 . 61 . . . none . . PASS Atlas-SNP ANKRD7 56311 hgsc.bcm.edu hg19 7 117879989 117879989 + Missense_Mutation SNP C C A novel TCGA-B9-4116-01A-01D-1252-08 TCGA-B9-4116-10A-01D-1252-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 847c8d58-eb11-487b-bc85-d58a4d47fae7 21d19fa5-2fc4-4abc-8810-947be94de078 . ANKRD7 NM_019644 exon6 c.C739A p.H247N GCGAGCCATGGAA . 221.0 31.0 88.0 0.0 . 44 . . . none . . PASS Atlas-SNP PRKAG2 51422 hgsc.bcm.edu hg19 7 151262972 151262972 + Splice_Site SNP C C T novel TCGA-B9-4116-01A-01D-1252-08 TCGA-B9-4116-10A-01D-1252-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 847c8d58-eb11-487b-bc85-d58a4d47fae7 21d19fa5-2fc4-4abc-8810-947be94de078 . PRKAG2 NM_016203 exon13 c.1234-1G>A . AGACATCTAAACG . 87.0 31.0 151.0 0.0 . 86 . . . none . . PASS Atlas-SNP FAM84B 157638 hgsc.bcm.edu hg19 8 127569250 127569250 + Missense_Mutation SNP G G C novel TCGA-B9-4116-01A-01D-1252-08 TCGA-B9-4116-10A-01D-1252-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 847c8d58-eb11-487b-bc85-d58a4d47fae7 21d19fa5-2fc4-4abc-8810-947be94de078 . FAM84B NM_174911 exon2 c.C385G p.Q129E GGTACTGAGCCTG . 156.0 43.0 109.0 0.0 . 19 . . . none . . PASS Atlas-SNP SPATA31E1 286234 hgsc.bcm.edu hg19 9 90501484 90501484 + Silent SNP C C T novel TCGA-B9-4116-01A-01D-1252-08 TCGA-B9-4116-10A-01D-1252-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 847c8d58-eb11-487b-bc85-d58a4d47fae7 21d19fa5-2fc4-4abc-8810-947be94de078 . . NM_178828 exon4 c.C2082T p.T694T GAAGACCGGGTTC . 234.0 65.0 160.0 0.0 . . . . . none . . PASS Atlas-SNP NUP214 8021 hgsc.bcm.edu hg19 9 134010301 134010301 + Missense_Mutation SNP A A T novel TCGA-B9-4116-01A-01D-1252-08 TCGA-B9-4116-10A-01D-1252-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 847c8d58-eb11-487b-bc85-d58a4d47fae7 21d19fa5-2fc4-4abc-8810-947be94de078 . NUP214 NM_005085 exon8 c.A848T p.H283L AAAAGCACCCAGA . 57.0 17.0 111.0 0.0 . 166 . . . none . . PASS Atlas-SNP FAM45A 404636 hgsc.bcm.edu hg19 10 120879873 120879873 + Missense_Mutation SNP A A T novel TCGA-B9-4116-01A-01D-1252-08 TCGA-B9-4116-10A-01D-1252-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 847c8d58-eb11-487b-bc85-d58a4d47fae7 21d19fa5-2fc4-4abc-8810-947be94de078 . FAM45A NM_207009 exon5 c.A502T p.M168L TTTGGAATGGAAA . 137.0 42.0 121.0 0.0 . 30 . . . none . . PASS Atlas-SNP TRIM48 79097 hgsc.bcm.edu hg19 11 55032729 55032729 + Missense_Mutation SNP G G T novel TCGA-B9-4116-01A-01D-1252-08 TCGA-B9-4116-10A-01D-1252-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 847c8d58-eb11-487b-bc85-d58a4d47fae7 21d19fa5-2fc4-4abc-8810-947be94de078 . TRIM48 NM_024114 exon2 c.G398T p.S133I GCTCCAGCTCTCA . 16.0 8.0 54.0 0.0 . 149 . . . none . . PASS Atlas-SNP COX8A 1351 hgsc.bcm.edu hg19 11 63743765 63743765 + Missense_Mutation SNP C C G novel TCGA-B9-4116-01A-01D-1252-08 TCGA-B9-4116-10A-01D-1252-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 847c8d58-eb11-487b-bc85-d58a4d47fae7 21d19fa5-2fc4-4abc-8810-947be94de078 . COX8A NM_004074 exon2 c.C183G p.H61Q GTCACACCTGGAG . 522.0 139.0 314.0 0.0 . 6 . . . none . . PASS Atlas-SNP SCYL1 57410 hgsc.bcm.edu hg19 11 65305494 65305494 + Nonsense_Mutation SNP G G A novel TCGA-B9-4116-01A-01D-1252-08 TCGA-B9-4116-10A-01D-1252-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 847c8d58-eb11-487b-bc85-d58a4d47fae7 21d19fa5-2fc4-4abc-8810-947be94de078 . SCYL1 NM_020680 exon16 c.G2088A p.W696X CAGCTGGGAAGCT . 45.0 18.0 35.0 0.0 . 76 . . . none . . PASS Atlas-SNP IGSF9B 22997 hgsc.bcm.edu hg19 11 133805658 133805658 + Splice_Site SNP C C T novel TCGA-B9-4116-01A-01D-1252-08 TCGA-B9-4116-10A-01D-1252-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 847c8d58-eb11-487b-bc85-d58a4d47fae7 21d19fa5-2fc4-4abc-8810-947be94de078 . IGSF9B NM_014987 exon8 c.822-1G>A . AGGTCGCTGCAAA . 60.0 32.0 63.0 0.0 . 290 . . . none . . PASS Atlas-SNP PPFIA2 8499 hgsc.bcm.edu hg19 12 81661720 81661720 + Silent SNP A A G novel TCGA-B9-4116-01A-01D-1252-08 TCGA-B9-4116-10A-01D-1252-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 847c8d58-eb11-487b-bc85-d58a4d47fae7 21d19fa5-2fc4-4abc-8810-947be94de078 . PPFIA2 NM_001220473 exon28 c.T3457C p.L1153L GTAATAATAAAGC . 32.0 8.0 33.0 0.0 . 207 . . . none . . PASS Atlas-SNP ZNF10 7556 hgsc.bcm.edu hg19 12 133732280 133732280 + Missense_Mutation SNP G G C novel TCGA-B9-4116-01A-01D-1252-08 TCGA-B9-4116-10A-01D-1252-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 847c8d58-eb11-487b-bc85-d58a4d47fae7 21d19fa5-2fc4-4abc-8810-947be94de078 . ZNF10 NM_015394 exon5 c.G448C p.V150L AGGCAAGTGGCAT . 43.0 10.0 148.0 0.0 . 58 . . . none . . PASS Atlas-SNP IL17D 53342 hgsc.bcm.edu hg19 13 21295994 21295994 + Silent SNP C C T rs372465901 alternate_allele TCGA-B9-4116-01A-01D-1252-08 TCGA-B9-4116-10A-01D-1252-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 847c8d58-eb11-487b-bc85-d58a4d47fae7 21d19fa5-2fc4-4abc-8810-947be94de078 . IL17D NM_138284 exon3 c.C510T p.V170V CTGCGTCCCCGAG . 209.0 72.0 104.0 0.0 . 4 . . . alt . . PASS Atlas-SNP FAM161B 145483 hgsc.bcm.edu hg19 14 74416885 74416885 + Missense_Mutation SNP T T C novel TCGA-B9-4116-01A-01D-1252-08 TCGA-B9-4116-10A-01D-1252-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 847c8d58-eb11-487b-bc85-d58a4d47fae7 21d19fa5-2fc4-4abc-8810-947be94de078 . FAM161B NM_152445 exon1 c.A34G p.T12A GCAAGGTTCGTTT . 22.0 11.0 21.0 0.0 . 67 . . . none . . PASS Atlas-SNP IGF1R 3480 hgsc.bcm.edu hg19 15 99465632 99465632 + Missense_Mutation SNP C C A novel TCGA-B9-4116-01A-01D-1252-08 TCGA-B9-4116-10A-01D-1252-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 847c8d58-eb11-487b-bc85-d58a4d47fae7 21d19fa5-2fc4-4abc-8810-947be94de078 . IGF1R NM_000875 exon11 c.C2457A p.N819K CTCCAACTTCGTC . 350.0 122.0 209.0 0.0 . 147 . . . none . . PASS Atlas-SNP MKL2 57496 hgsc.bcm.edu hg19 16 14346228 14346228 + Missense_Mutation SNP T T G novel TCGA-B9-4116-01A-01D-1252-08 TCGA-B9-4116-10A-01D-1252-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 847c8d58-eb11-487b-bc85-d58a4d47fae7 21d19fa5-2fc4-4abc-8810-947be94de078 . MKL2 NM_014048 exon15 c.T2422G p.S808A CCTAGTTCACCCC . 246.0 70.0 208.0 0.0 . 103 . . . none . . PASS Atlas-SNP BFAR 51283 hgsc.bcm.edu hg19 16 14755800 14755800 + Missense_Mutation SNP C C G novel TCGA-B9-4116-01A-01D-1252-08 TCGA-B9-4116-10A-01D-1252-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 847c8d58-eb11-487b-bc85-d58a4d47fae7 21d19fa5-2fc4-4abc-8810-947be94de078 . BFAR NM_016561 exon6 c.C835G p.P279A AGCTCCCCCAGGC . 478.0 175.0 325.0 0.0 . 38 . . . none . . PASS Atlas-SNP GPRC5B 51704 hgsc.bcm.edu hg19 16 19884048 19884048 + Silent SNP G G A novel TCGA-B9-4116-01A-01D-1252-08 TCGA-B9-4116-10A-01D-1252-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 847c8d58-eb11-487b-bc85-d58a4d47fae7 21d19fa5-2fc4-4abc-8810-947be94de078 . GPRC5B NM_016235 exon2 c.C120T p.D40D GAGGAGGTCCAGC . 207.0 82.0 115.0 0.0 . 54 . . . none . . PASS Atlas-SNP BCL7C 9274 hgsc.bcm.edu hg19 16 30899187 30899187 + Silent SNP C C T novel TCGA-B9-4116-01A-01D-1252-08 TCGA-B9-4116-10A-01D-1252-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 847c8d58-eb11-487b-bc85-d58a4d47fae7 21d19fa5-2fc4-4abc-8810-947be94de078 . BCL7C NM_004765 exon6 c.G653A p.X218X GCTTCTCAGGGGT . 677.0 259.0 404.0 0.0 . 30 . . . none . . PASS Atlas-SNP ZNF423 23090 hgsc.bcm.edu hg19 16 49671278 49671278 + Missense_Mutation SNP G G T novel TCGA-B9-4116-01A-01D-1252-08 TCGA-B9-4116-10A-01D-1252-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 847c8d58-eb11-487b-bc85-d58a4d47fae7 21d19fa5-2fc4-4abc-8810-947be94de078 . ZNF423 NM_015069 exon4 c.C1785A p.H595Q CTTGCTGTGGGCC . 318.0 99.0 150.0 0.0 . 463 . . . none . . PASS Atlas-SNP BBS2 583 hgsc.bcm.edu hg19 16 56531663 56531663 + Silent SNP G G A novel TCGA-B9-4116-01A-01D-1252-08 TCGA-B9-4116-10A-01D-1252-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 847c8d58-eb11-487b-bc85-d58a4d47fae7 21d19fa5-2fc4-4abc-8810-947be94de078 . BBS2 NM_031885 exon14 c.C1789T p.L597L TAACTAGCACCTT . 75.0 31.0 282.0 0.0 . 67 . . . none . . PASS Atlas-SNP ZC3H18 124245 hgsc.bcm.edu hg19 16 88653023 88653023 + Nonsense_Mutation SNP G G T novel TCGA-B9-4116-01A-01D-1252-08 TCGA-B9-4116-10A-01D-1252-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 847c8d58-eb11-487b-bc85-d58a4d47fae7 21d19fa5-2fc4-4abc-8810-947be94de078 . ZC3H18 NM_144604 exon3 c.G619T p.E207X CTGGAAGAAGGTG . 166.0 40.0 93.0 0.0 . 90 . . . none . . PASS Atlas-SNP MINK1 50488 hgsc.bcm.edu hg19 17 4800540 4800540 + Silent SNP T T G novel TCGA-B9-4116-01A-01D-1252-08 TCGA-B9-4116-10A-01D-1252-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 847c8d58-eb11-487b-bc85-d58a4d47fae7 21d19fa5-2fc4-4abc-8810-947be94de078 . MINK1 NM_153827 exon32 c.T3957G p.V1319V CCAAGTTTACTTC . 96.0 26.0 72.0 0.0 . 110 . . . none . . PASS Atlas-SNP YBX2 51087 hgsc.bcm.edu hg19 17 7193332 7193332 + Missense_Mutation SNP C C A novel TCGA-B9-4116-01A-01D-1252-08 TCGA-B9-4116-10A-01D-1252-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 847c8d58-eb11-487b-bc85-d58a4d47fae7 21d19fa5-2fc4-4abc-8810-947be94de078 . YBX2 NM_015982 exon6 c.G803T p.G268V TCATCTCCCTGCT . 274.0 112.0 151.0 0.0 . 28 . . . none . . PASS Atlas-SNP SPEM1 374768 hgsc.bcm.edu hg19 17 7324267 7324267 + Silent SNP C C A novel TCGA-B9-4116-01A-01D-1252-08 TCGA-B9-4116-10A-01D-1252-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 847c8d58-eb11-487b-bc85-d58a4d47fae7 21d19fa5-2fc4-4abc-8810-947be94de078 . SPEM1 NM_199339 exon3 c.C273A p.V91V TGCAGTCCATCTT . 335.0 133.0 176.0 0.0 . 41 . . . none . . PASS Atlas-SNP NCOR1 9611 hgsc.bcm.edu hg19 17 15964734 15964734 + Silent SNP A A G novel TCGA-B9-4116-01A-01D-1252-08 TCGA-B9-4116-10A-01D-1252-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 847c8d58-eb11-487b-bc85-d58a4d47fae7 21d19fa5-2fc4-4abc-8810-947be94de078 . NCOR1 NM_006311 exon37 c.T5862C p.S1954S GTCTGAACTTTGA . 325.0 87.0 367.0 0.0 . 240 . . . none . . PASS Atlas-SNP PLEKHH3 79990 hgsc.bcm.edu hg19 17 40821477 40821477 + Nonsense_Mutation SNP C C A novel TCGA-B9-4116-01A-01D-1252-08 TCGA-B9-4116-10A-01D-1252-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 847c8d58-eb11-487b-bc85-d58a4d47fae7 21d19fa5-2fc4-4abc-8810-947be94de078 . PLEKHH3 NM_024927 exon12 c.G2176T p.E726X GGCTCTCTCCCAC . 114.0 48.0 68.0 0.0 . 49 . . . none . . PASS Atlas-SNP TIMM44 10469 hgsc.bcm.edu hg19 19 8002997 8002997 + Missense_Mutation SNP T T A novel TCGA-B9-4116-01A-01D-1252-08 TCGA-B9-4116-10A-01D-1252-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 847c8d58-eb11-487b-bc85-d58a4d47fae7 21d19fa5-2fc4-4abc-8810-947be94de078 . TIMM44 NM_006351 exon3 c.A227T p.E76V TTCATTTCTTTGT . 485.0 164.0 319.0 0.0 . 47 . . . none . . PASS Atlas-SNP OR7E24 26648 hgsc.bcm.edu hg19 19 9362275 9362275 + Missense_Mutation SNP T T G novel TCGA-B9-4116-01A-01D-1252-08 TCGA-B9-4116-10A-01D-1252-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 847c8d58-eb11-487b-bc85-d58a4d47fae7 21d19fa5-2fc4-4abc-8810-947be94de078 . OR7E24 NM_001079935 exon1 c.T556G p.C186G CTCACCTGCTTCA . 47.0 12.0 107.0 0.0 . 48 . . . none . . PASS Atlas-SNP UPF1 5976 hgsc.bcm.edu hg19 19 18963808 18963808 + Missense_Mutation SNP A A G novel TCGA-B9-4116-01A-01D-1252-08 TCGA-B9-4116-10A-01D-1252-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 847c8d58-eb11-487b-bc85-d58a4d47fae7 21d19fa5-2fc4-4abc-8810-947be94de078 . UPF1 NM_002911 exon7 c.A985G p.I329V GATAACATCACTG . 287.0 92.0 231.0 0.0 . 88 . . . none . . PASS Atlas-SNP HSD17B14 51171 hgsc.bcm.edu hg19 19 49316535 49316535 + Missense_Mutation SNP A A C novel TCGA-B9-4116-01A-01D-1252-08 TCGA-B9-4116-10A-01D-1252-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 847c8d58-eb11-487b-bc85-d58a4d47fae7 21d19fa5-2fc4-4abc-8810-947be94de078 . HSD17B14 NM_016246 exon9 c.T710G p.F237C GTGCAGAAGTTGG . 46.0 22.0 18.0 0.0 . 25 . . . none . . PASS Atlas-SNP NKX2-4 644524 hgsc.bcm.edu hg19 20 21376576 21376576 + Silent SNP G G T novel TCGA-B9-4116-01A-01D-1252-08 TCGA-B9-4116-10A-01D-1252-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 847c8d58-eb11-487b-bc85-d58a4d47fae7 21d19fa5-2fc4-4abc-8810-947be94de078 . NKX2-4 NM_033176 exon2 c.C1038A p.A346A CAGGTTGGCGCCC . 105.0 30.0 63.0 0.0 . 7 . . . none . . PASS Atlas-SNP ACTR5 79913 hgsc.bcm.edu hg19 20 37400319 37400319 + Missense_Mutation SNP G G C novel TCGA-B9-4116-01A-01D-1252-08 TCGA-B9-4116-10A-01D-1252-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 847c8d58-eb11-487b-bc85-d58a4d47fae7 21d19fa5-2fc4-4abc-8810-947be94de078 . ACTR5 NM_024855 exon9 c.G1684C p.G562R AAGGGAGGAGAGT . 187.0 75.0 123.0 0.0 . 44 . . . none . . PASS Atlas-SNP ZNFX1 57169 hgsc.bcm.edu hg19 20 47864026 47864026 + Silent SNP G G A novel TCGA-B9-4116-01A-01D-1252-08 TCGA-B9-4116-10A-01D-1252-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 847c8d58-eb11-487b-bc85-d58a4d47fae7 21d19fa5-2fc4-4abc-8810-947be94de078 . ZNFX1 NM_021035 exon14 c.C5535T p.H1845H GAACCAGTGACCA . 225.0 81.0 142.0 0.0 . 194 . . . none . . PASS Atlas-SNP ZNFX1 57169 hgsc.bcm.edu hg19 20 47864027 47864027 + Missense_Mutation SNP T T G novel TCGA-B9-4116-01A-01D-1252-08 TCGA-B9-4116-10A-01D-1252-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 847c8d58-eb11-487b-bc85-d58a4d47fae7 21d19fa5-2fc4-4abc-8810-947be94de078 . ZNFX1 NM_021035 exon14 c.A5534C p.H1845P AACCAGTGACCAC . 229.0 85.0 142.0 0.0 . 194 . . . none . . PASS Atlas-SNP ZRSR2 8233 hgsc.bcm.edu hg19 X 15841260 15841260 + Silent SNP C C G novel TCGA-B9-4116-01A-01D-1252-08 TCGA-B9-4116-10A-01D-1252-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 847c8d58-eb11-487b-bc85-d58a4d47fae7 21d19fa5-2fc4-4abc-8810-947be94de078 . ZRSR2 NM_005089 exon11 c.C1344G p.R448R GAGCCGCAGGAGC . 50.0 5.0 31.0 0.0 . 78 . . . none . . PASS Atlas-SNP SHROOM4 57477 hgsc.bcm.edu hg19 X 50350751 50350751 + Missense_Mutation SNP G G C rs201290098 TCGA-B9-4116-01A-01D-1252-08 TCGA-B9-4116-10A-01D-1252-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 847c8d58-eb11-487b-bc85-d58a4d47fae7 21d19fa5-2fc4-4abc-8810-947be94de078 . SHROOM4 NM_020717 exon6 c.C3391G p.Q1131E CCTCCTGTTGCTT . 101.0 5.0 55.0 0.0 . 171 . . . weak . . PASS Atlas-SNP ATP6 0 hgsc.bcm.edu hg19 MT 9010 9010 + Missense_Mutation SNP G G A novel TCGA-B9-4116-01A-01D-1252-08 TCGA-B9-4116-10A-01D-1252-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 847c8d58-eb11-487b-bc85-d58a4d47fae7 21d19fa5-2fc4-4abc-8810-947be94de078 . . ENST00000361899 exon1 c.G484A p.A162T CTAACCGCTAACA . 44.0 42.0 13.0 0.0 . . . . . none . . PASS Atlas-SNP SEC16A 9919 hgsc.bcm.edu hg19 9 139369195 139369195 + Frame_Shift_Del DEL G G - novel TCGA-B9-4116-01A-01D-1252-08 TCGA-B9-4116-10A-01D-1252-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 847c8d58-eb11-487b-bc85-d58a4d47fae7 21d19fa5-2fc4-4abc-8810-947be94de078 . SEC16A NM_014866 exon3 c.2874delT p.P958fs . . 213.0 76.0 104.0 0.0 . 249 . 0.356808 0 none . . PASS Atlas-INDEL LCLAT1 253558 hgsc.bcm.edu hg19 2 30863165 30863173 + In_Frame_Del DEL GAAGAGAAA GAAGAGAAA - novel TCGA-B9-4116-01A-01D-1252-08 TCGA-B9-4116-10A-01D-1252-08 GAAGAGAAA GAAGAGAAA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 847c8d58-eb11-487b-bc85-d58a4d47fae7 21d19fa5-2fc4-4abc-8810-947be94de078 . LCLAT1 NM_182551 exon7 c.924_932del p.308_311del . . 186.0 23.0 220.0 0.0 . 51 . 0.123656 0 none . . PASS Atlas-INDEL LRRC4C 57689 hgsc.bcm.edu hg19 11 40136626 40136630 + Frame_Shift_Del DEL AGCAC AGCAC - novel TCGA-B9-4116-01A-01D-1252-08 TCGA-B9-4116-10A-01D-1252-08 AGCAC AGCAC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 847c8d58-eb11-487b-bc85-d58a4d47fae7 21d19fa5-2fc4-4abc-8810-947be94de078 LRRC4C,NS,carcinoma,0,1 LRRC4C NM_020929 exon5 c.1214_1218del p.405_406del . . 222.0 50.0 484.0 0.0 . 190 . 0.225225 0 none . . PASS Atlas-INDEL MAT2A 4144 hgsc.bcm.edu hg19 2 85769094 85769097 + In_Frame_Del DEL AAGT AAGT - novel TCGA-B9-4116-01A-01D-1252-08 TCGA-B9-4116-10A-01D-1252-08 AAGT AAGT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 847c8d58-eb11-487b-bc85-d58a4d47fae7 21d19fa5-2fc4-4abc-8810-947be94de078 . MAT2A NM_005911 exon5 c.547_549del p.183_183del . . 52.0 13.0 153.0 0.0 . 23 . 0.25 0 none . . PASS Atlas-INDEL CA6 765 hgsc.bcm.edu hg19 1 9009376 9009376 + Frame_Shift_Del DEL A A - novel TCGA-B9-4116-01A-01D-1252-08 TCGA-B9-4116-10A-01D-1252-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 847c8d58-eb11-487b-bc85-d58a4d47fae7 21d19fa5-2fc4-4abc-8810-947be94de078 . CA6 NM_001270500 exon2 c.133delC p.Q45fs . . 153.0 59.0 80.0 0.0 . 47 . 0.385621 0 none . . PASS Atlas-INDEL SLC16A13 201232 hgsc.bcm.edu hg19 17 6942168 6942169 + In_Frame_Ins INS - - ATA novel TCGA-B9-4116-01A-01D-1252-08 TCGA-B9-4116-10A-01D-1252-08 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 847c8d58-eb11-487b-bc85-d58a4d47fae7 21d19fa5-2fc4-4abc-8810-947be94de078 . SLC16A13 NM_201566 exon3 c.1041_1042insATA p.M347delinsMI . . 467.0 118.0 309.0 0.0 . 28 . 0.252677 0 none . . PASS Atlas-INDEL C3orf17 25871 hgsc.bcm.edu hg19 3 112736366 112736368 + In_Frame_Del DEL CAT CAT - novel TCGA-B9-4116-01A-01D-1252-08 TCGA-B9-4116-10A-01D-1252-08 CAT CAT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 847c8d58-eb11-487b-bc85-d58a4d47fae7 21d19fa5-2fc4-4abc-8810-947be94de078 . C3orf17 NM_015412 exon2 c.189_191del p.63_64del . . 86.0 23.0 162.0 0.0 . 37 . 0.267442 0 none . . PASS Atlas-INDEL ITGA7 3679 hgsc.bcm.edu hg19 12 56096870 56096870 + Frame_Shift_Del DEL T T - novel TCGA-B9-4116-01A-01D-1252-08 TCGA-B9-4116-10A-01D-1252-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 847c8d58-eb11-487b-bc85-d58a4d47fae7 21d19fa5-2fc4-4abc-8810-947be94de078 . ITGA7 NM_002206 exon2 c.300delG p.E100fs . . 363.0 130.0 250.0 0.0 . 194 . 0.358127 0 none . . PASS Atlas-INDEL PABPC4 8761 hgsc.bcm.edu hg19 1 40038242 40038242 + Frame_Shift_Del DEL G G - novel TCGA-B9-4116-01A-01D-1252-08 TCGA-B9-4116-10A-01D-1252-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 847c8d58-eb11-487b-bc85-d58a4d47fae7 21d19fa5-2fc4-4abc-8810-947be94de078 . PABPC4 NM_001135653 exon2 c.211delA p.T71fs . . 117.0 34.0 179.0 0.0 . 56 . 0.290598 0 none . . PASS Atlas-INDEL FGF3 2248 hgsc.bcm.edu hg19 11 69625463 69625464 + Frame_Shift_Ins INS - - T novel TCGA-B9-4116-01A-01D-1252-08 TCGA-B9-4116-10A-01D-1252-08 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 847c8d58-eb11-487b-bc85-d58a4d47fae7 21d19fa5-2fc4-4abc-8810-947be94de078 . FGF3 NM_005247 exon3 c.330_331insA p.H110fs . . 174.0 54.0 132.0 0.0 . 27 . 0.310345 0 none . . PASS Atlas-INDEL MZT2A 653784 hgsc.bcm.edu hg19 2 132249519 132249520 + Frame_Shift_Ins INS - - A novel TCGA-B9-4116-01A-01D-1252-08 TCGA-B9-4116-10A-01D-1252-08 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 847c8d58-eb11-487b-bc85-d58a4d47fae7 21d19fa5-2fc4-4abc-8810-947be94de078 . MZT2A NM_001085365 exon2 c.249_250insT p.Q83fs . . 49.0 17.0 38.0 0.0 . 6 . 0.346939 0 none . . PASS Atlas-INDEL RAB11B 9230 hgsc.bcm.edu hg19 19 8468330 8468331 + Frame_Shift_Del DEL CA CA - novel TCGA-B9-4116-01A-01D-1252-08 TCGA-B9-4116-10A-01D-1252-08 CA CA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 847c8d58-eb11-487b-bc85-d58a4d47fae7 21d19fa5-2fc4-4abc-8810-947be94de078 . RAB11B NM_004218 exon5 c.544_545del p.182_182del . . 255.0 75.0 178.0 0.0 . 15 . 0.294118 0 none . . PASS Atlas-INDEL CEP250 11190 hgsc.bcm.edu hg19 20 34091451 34091451 + Frame_Shift_Del DEL A A - novel TCGA-B9-4116-01A-01D-1252-08 TCGA-B9-4116-10A-01D-1252-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 847c8d58-eb11-487b-bc85-d58a4d47fae7 21d19fa5-2fc4-4abc-8810-947be94de078 . CEP250 NM_007186 exon30 c.5253delC p.L1751fs . . 311.0 105.0 166.0 0.0 . 141 . 0.337621 0 none . . PASS Atlas-INDEL KIAA1033 23325 hgsc.bcm.edu hg19 12 105512257 105512259 + In_Frame_Del DEL GTG GTG - novel TCGA-B9-4116-01A-01D-1252-08 TCGA-B9-4116-10A-01D-1252-08 GTG GTG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 847c8d58-eb11-487b-bc85-d58a4d47fae7 21d19fa5-2fc4-4abc-8810-947be94de078 . KIAA1033 NM_015275 exon7 c.468_470del p.156_157del . . 36.0 11.0 194.0 0.0 . 83 . 0.305556 0 none . . PASS Atlas-INDEL