Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq TVarRat NVarRat dbSNP_Strength dbSNP_AF dbSNP_PopFreq Confidence Algorithm PIGV 55650 hgsc.bcm.edu hg19 1 27121059 27121059 + Silent SNP C C T novel TCGA-B9-4115-01A-01D-1252-08 TCGA-B9-4115-10A-01D-1252-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1c21a098-a845-4933-9153-f44ea58bb752 50da5c23-8dd6-49bd-8316-9d1438d89ee8 . PIGV NM_001202554 exon3 c.C534T p.F178F GACATTCAGTGCC . 180.0 57.0 116.0 0.0 . 47 . . . none . . PASS Atlas-SNP SLC9A1 6548 hgsc.bcm.edu hg19 1 27428600 27428600 + Silent SNP C C T novel TCGA-B9-4115-01A-01D-1252-08 TCGA-B9-4115-10A-01D-1252-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1c21a098-a845-4933-9153-f44ea58bb752 50da5c23-8dd6-49bd-8316-9d1438d89ee8 . SLC9A1 NM_003047 exon9 c.G1842A p.L614L GGAAGGCAGGGAC . 270.0 74.0 166.0 0.0 . 68 . . . none . . PASS Atlas-SNP MACF1 23499 hgsc.bcm.edu hg19 1 39907695 39907695 + Missense_Mutation SNP T T G novel TCGA-B9-4115-01A-01D-1252-08 TCGA-B9-4115-10A-01D-1252-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1c21a098-a845-4933-9153-f44ea58bb752 50da5c23-8dd6-49bd-8316-9d1438d89ee8 . MACF1 NM_012090 exon72 c.T12567G p.N4189K CCTCAATACTGTT . 45.0 12.0 217.0 0.0 . 909 . . . none . . PASS Atlas-SNP MCOLN3 55283 hgsc.bcm.edu hg19 1 85491700 85491700 + Silent SNP A A G novel TCGA-B9-4115-01A-01D-1252-08 TCGA-B9-4115-10A-01D-1252-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1c21a098-a845-4933-9153-f44ea58bb752 50da5c23-8dd6-49bd-8316-9d1438d89ee8 . MCOLN3 NM_018298 exon9 c.T1017C p.N339N CCATCCATTGACA . 40.0 13.0 64.0 0.0 . 74 . . . none . . PASS Atlas-SNP ATP1A2 477 hgsc.bcm.edu hg19 1 160105304 160105304 + Silent SNP C C A novel TCGA-B9-4115-01A-01D-1252-08 TCGA-B9-4115-10A-01D-1252-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1c21a098-a845-4933-9153-f44ea58bb752 50da5c23-8dd6-49bd-8316-9d1438d89ee8 . ATP1A2 NM_000702 exon16 c.C2196A p.G732G CATGGGCATCTCT . 246.0 97.0 142.0 0.0 . 167 . . . none . . PASS Atlas-SNP IRF6 3664 hgsc.bcm.edu hg19 1 209964089 209964089 + Missense_Mutation SNP G G C novel TCGA-B9-4115-01A-01D-1252-08 TCGA-B9-4115-10A-01D-1252-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1c21a098-a845-4933-9153-f44ea58bb752 50da5c23-8dd6-49bd-8316-9d1438d89ee8 . IRF6 NM_006147 exon7 c.C811G p.L271V GCTCCAGGCTGAC . 167.0 71.0 229.0 0.0 . 65 . . . none . . PASS Atlas-SNP PRKCE 5581 hgsc.bcm.edu hg19 2 45879507 45879507 + Missense_Mutation SNP G G C novel TCGA-B9-4115-01A-01D-1252-08 TCGA-B9-4115-10A-01D-1252-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1c21a098-a845-4933-9153-f44ea58bb752 50da5c23-8dd6-49bd-8316-9d1438d89ee8 . PRKCE NM_005400 exon1 c.G268C p.G90R CCCATAGGCTACG . 98.0 43.0 53.0 0.0 . 58 . . . none . . PASS Atlas-SNP REV1 51455 hgsc.bcm.edu hg19 2 100019166 100019166 + Missense_Mutation SNP C C T novel TCGA-B9-4115-01A-01D-1252-08 TCGA-B9-4115-10A-01D-1252-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1c21a098-a845-4933-9153-f44ea58bb752 50da5c23-8dd6-49bd-8316-9d1438d89ee8 . REV1 NM_016316 exon21 c.G3482A p.G1161E ACAGCTCCAGCTA . 123.0 51.0 198.0 0.0 . 100 . . . none . . PASS Atlas-SNP NUP210 23225 hgsc.bcm.edu hg19 3 13415370 13415370 + Missense_Mutation SNP G G A novel TCGA-B9-4115-01A-01D-1252-08 TCGA-B9-4115-10A-01D-1252-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1c21a098-a845-4933-9153-f44ea58bb752 50da5c23-8dd6-49bd-8316-9d1438d89ee8 . NUP210 NM_024923 exon12 c.C1435T p.H479Y CACCGTGGGCCTG . 65.0 25.0 40.0 0.0 . 182 . . . none . . PASS Atlas-SNP TRANK1 9881 hgsc.bcm.edu hg19 3 36873055 36873055 + Silent SNP C C T novel TCGA-B9-4115-01A-01D-1252-08 TCGA-B9-4115-10A-01D-1252-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1c21a098-a845-4933-9153-f44ea58bb752 50da5c23-8dd6-49bd-8316-9d1438d89ee8 . TRANK1 NM_014831 exon21 c.G7887A p.L2629L ACAGAGCAGGCGG . 85.0 32.0 49.0 0.0 . 398 . . . none . . PASS Atlas-SNP ACAA1 30 hgsc.bcm.edu hg19 3 38178134 38178134 + Missense_Mutation SNP C C G novel TCGA-B9-4115-01A-01D-1252-08 TCGA-B9-4115-10A-01D-1252-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1c21a098-a845-4933-9153-f44ea58bb752 50da5c23-8dd6-49bd-8316-9d1438d89ee8 . ACAA1 NM_001130410 exon2 c.G214C p.V72L TGAGAACCGCGGT . 94.0 28.0 60.0 0.0 . 32 . . . none . . PASS Atlas-SNP HPSE 10855 hgsc.bcm.edu hg19 4 84243394 84243394 + Silent SNP G G A novel TCGA-B9-4115-01A-01D-1252-08 TCGA-B9-4115-10A-01D-1252-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1c21a098-a845-4933-9153-f44ea58bb752 50da5c23-8dd6-49bd-8316-9d1438d89ee8 . HPSE NM_001199830 exon2 c.C351T p.Y117Y TTGCCAGTAACTT . 56.0 24.0 166.0 0.0 . 55 . . . none . . PASS Atlas-SNP FAM198B 51313 hgsc.bcm.edu hg19 4 159092402 159092402 + Silent SNP A A T novel TCGA-B9-4115-01A-01D-1252-08 TCGA-B9-4115-10A-01D-1252-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1c21a098-a845-4933-9153-f44ea58bb752 50da5c23-8dd6-49bd-8316-9d1438d89ee8 . FAM198B NM_016613 exon2 c.T126A p.T42T ACACGCAGTGCCC . 301.0 115.0 172.0 0.0 . 134 . . . none . . PASS Atlas-SNP FAM173B 134145 hgsc.bcm.edu hg19 5 10249973 10249973 + Missense_Mutation SNP C C T novel TCGA-B9-4115-01A-01D-1252-08 TCGA-B9-4115-10A-01D-1252-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1c21a098-a845-4933-9153-f44ea58bb752 50da5c23-8dd6-49bd-8316-9d1438d89ee8 . FAM173B NM_199133 exon1 c.G13A p.G5R CACCTCCTCCTCC . 122.0 45.0 116.0 0.0 . 24 . . . none . . PASS Atlas-SNP ARHGEF28 64283 hgsc.bcm.edu hg19 5 73163796 73163796 + Missense_Mutation SNP G G C novel TCGA-B9-4115-01A-01D-1252-08 TCGA-B9-4115-10A-01D-1252-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1c21a098-a845-4933-9153-f44ea58bb752 50da5c23-8dd6-49bd-8316-9d1438d89ee8 NP_001073948_1,NS,carcinoma,0,2 . NM_001080479 exon19 c.G2248C p.G750R ACTGTGGGACAGG . 33.0 12.0 81.0 0.0 . . . . . none . . PASS Atlas-SNP SHROOM1 134549 hgsc.bcm.edu hg19 5 132160478 132160478 + Missense_Mutation SNP G G T novel TCGA-B9-4115-01A-01D-1252-08 TCGA-B9-4115-10A-01D-1252-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1c21a098-a845-4933-9153-f44ea58bb752 50da5c23-8dd6-49bd-8316-9d1438d89ee8 . SHROOM1 NM_133456 exon3 c.C1070A p.P357H TCTGCAGGATACA . 204.0 78.0 110.0 0.0 . 35 . . . none . . PASS Atlas-SNP SEC24A 10802 hgsc.bcm.edu hg19 5 134002687 134002687 + Splice_Site SNP G G A novel TCGA-B9-4115-01A-01D-1252-08 TCGA-B9-4115-10A-01D-1252-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1c21a098-a845-4933-9153-f44ea58bb752 50da5c23-8dd6-49bd-8316-9d1438d89ee8 . SEC24A NM_001252231 exon3 c.739+1G>A . AAGAAGGTAAGTG . 137.0 50.0 99.0 0.0 . 77 . . . none . . PASS Atlas-SNP SPOCK1 6695 hgsc.bcm.edu hg19 5 136834142 136834142 + Missense_Mutation SNP C C A rs200001053 by1000genomes;alternate_allele TCGA-B9-4115-01A-01D-1252-08 TCGA-B9-4115-10A-01D-1252-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1c21a098-a845-4933-9153-f44ea58bb752 50da5c23-8dd6-49bd-8316-9d1438d89ee8 . SPOCK1 NM_004598 exon2 c.G106T p.G36C AATTGCCGTGGTT . 56.0 17.0 37.0 0.0 . 58 . . . alt C|1.000;G|0.000 . PASS Atlas-SNP KIF6 221458 hgsc.bcm.edu hg19 6 39313488 39313488 + Missense_Mutation SNP G G T novel TCGA-B9-4115-01A-01D-1252-08 TCGA-B9-4115-10A-01D-1252-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1c21a098-a845-4933-9153-f44ea58bb752 50da5c23-8dd6-49bd-8316-9d1438d89ee8 . KIF6 NM_145027 exon21 c.C2309A p.P770Q TCCAGTGGGGTGC . 67.0 29.0 53.0 0.0 . 233 . . . none . . PASS Atlas-SNP NR2E1 7101 hgsc.bcm.edu hg19 6 108499383 108499383 + Missense_Mutation SNP T T G novel TCGA-B9-4115-01A-01D-1252-08 TCGA-B9-4115-10A-01D-1252-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1c21a098-a845-4933-9153-f44ea58bb752 50da5c23-8dd6-49bd-8316-9d1438d89ee8 . NR2E1 NM_003269 exon5 c.T580G p.F194V CTTCTCTTCATGA . 79.0 29.0 181.0 0.0 . 57 . . . none . . PASS Atlas-SNP HIPK2 28996 hgsc.bcm.edu hg19 7 139299101 139299101 + Missense_Mutation SNP T T C novel TCGA-B9-4115-01A-01D-1252-08 TCGA-B9-4115-10A-01D-1252-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1c21a098-a845-4933-9153-f44ea58bb752 50da5c23-8dd6-49bd-8316-9d1438d89ee8 . HIPK2 NM_022740 exon8 c.A1921G p.T641A GGGCTGTTCCTGT . 107.0 46.0 39.0 0.0 . 192 . . . none . . PASS Atlas-SNP SLC35G5 83650 hgsc.bcm.edu hg19 8 11188719 11188719 + Missense_Mutation SNP G G A novel TCGA-B9-4115-01A-01D-1252-08 TCGA-B9-4115-10A-01D-1252-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1c21a098-a845-4933-9153-f44ea58bb752 50da5c23-8dd6-49bd-8316-9d1438d89ee8 AMAC1L2,NS,carcinoma,0,1 . NM_054028 exon1 c.G104A p.G35D CCTCTGGTGCCAC . 273.0 14.0 118.0 1.0 . . . . . none . . PASS Atlas-SNP FGFR1 2260 hgsc.bcm.edu hg19 8 38271216 38271216 + Missense_Mutation SNP G G T rs377620009 alternate_allele TCGA-B9-4115-01A-01D-1252-08 TCGA-B9-4115-10A-01D-1252-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1c21a098-a845-4933-9153-f44ea58bb752 50da5c23-8dd6-49bd-8316-9d1438d89ee8 Q7Z2S2_HUMAN,NS,carcinoma,0,4 FGFR1 NM_001174067 exon19 c.C2492A p.P831Q GGCAGCGGCTCAT . 50.0 3.0 40.0 0.0 . 284 . . . alt . . PASS Atlas-SNP TYRP1 7306 hgsc.bcm.edu hg19 9 12694339 12694339 + Missense_Mutation SNP C C G novel TCGA-B9-4115-01A-01D-1252-08 TCGA-B9-4115-10A-01D-1252-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1c21a098-a845-4933-9153-f44ea58bb752 50da5c23-8dd6-49bd-8316-9d1438d89ee8 . TYRP1 NM_000550 exon2 c.C343G p.P115A TGCCGTCCTGGCT . 48.0 14.0 63.0 0.0 . 60 . . . none . . PASS Atlas-SNP KIF12 113220 hgsc.bcm.edu hg19 9 116859620 116859620 + Missense_Mutation SNP A A T novel TCGA-B9-4115-01A-01D-1252-08 TCGA-B9-4115-10A-01D-1252-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1c21a098-a845-4933-9153-f44ea58bb752 50da5c23-8dd6-49bd-8316-9d1438d89ee8 . KIF12 NM_138424 exon4 c.T193A p.F65I TCCCAAATTCCAC . 92.0 32.0 71.0 0.0 . 35 . . . none . . PASS Atlas-SNP METTL10 399818 hgsc.bcm.edu hg19 10 126477651 126477651 + Silent SNP A A G novel TCGA-B9-4115-01A-01D-1252-08 TCGA-B9-4115-10A-01D-1252-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1c21a098-a845-4933-9153-f44ea58bb752 50da5c23-8dd6-49bd-8316-9d1438d89ee8 . METTL10 NM_212554 exon3 c.T252C p.L84L AATATCAAGCACT . 110.0 39.0 182.0 0.0 . 16 . . . none . . PASS Atlas-SNP OTUB1 55611 hgsc.bcm.edu hg19 11 63756155 63756155 + Missense_Mutation SNP G G T novel TCGA-B9-4115-01A-01D-1252-08 TCGA-B9-4115-10A-01D-1252-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1c21a098-a845-4933-9153-f44ea58bb752 50da5c23-8dd6-49bd-8316-9d1438d89ee8 . OTUB1 NM_017670 exon3 c.G150T p.E50D GTCAGAGCGGCTG . 515.0 141.0 346.0 0.0 . 19 . . . none . . PASS Atlas-SNP IGSF9B 22997 hgsc.bcm.edu hg19 11 133814179 133814179 + Silent SNP C C A novel TCGA-B9-4115-01A-01D-1252-08 TCGA-B9-4115-10A-01D-1252-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1c21a098-a845-4933-9153-f44ea58bb752 50da5c23-8dd6-49bd-8316-9d1438d89ee8 . IGSF9B NM_014987 exon3 c.G345T p.V115V CATGAGCACTTTG . 67.0 32.0 59.0 0.0 . 290 . . . none . . PASS Atlas-SNP ATP11A 23250 hgsc.bcm.edu hg19 13 113516824 113516824 + Missense_Mutation SNP G G A rs140812688 TCGA-B9-4115-01A-01D-1252-08 TCGA-B9-4115-10A-01D-1252-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1c21a098-a845-4933-9153-f44ea58bb752 50da5c23-8dd6-49bd-8316-9d1438d89ee8 . ATP11A NM_032189 exon25 c.G2926A p.A976T TTTGACGCACTGG . 92.0 38.0 86.0 0.0 . 225 . . . weak G|1.000;A|0.000 0.000 PASS Atlas-SNP ATP11A 23250 hgsc.bcm.edu hg19 13 113516825 113516825 + Missense_Mutation SNP C C G novel TCGA-B9-4115-01A-01D-1252-08 TCGA-B9-4115-10A-01D-1252-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1c21a098-a845-4933-9153-f44ea58bb752 50da5c23-8dd6-49bd-8316-9d1438d89ee8 . ATP11A NM_032189 exon25 c.C2927G p.A976G TTGACGCACTGGT . 92.0 38.0 86.0 0.0 . 225 . . . none . . PASS Atlas-SNP ZFYVE26 23503 hgsc.bcm.edu hg19 14 68282659 68282659 + Nonsense_Mutation SNP C C A novel TCGA-B9-4115-01A-01D-1252-08 TCGA-B9-4115-10A-01D-1252-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1c21a098-a845-4933-9153-f44ea58bb752 50da5c23-8dd6-49bd-8316-9d1438d89ee8 . ZFYVE26 NM_015346 exon2 c.G22T p.E8X CTTCCTCTTTTCC . 64.0 24.0 56.0 0.0 . 223 . . . none . . PASS Atlas-SNP DICER1 23405 hgsc.bcm.edu hg19 14 95556880 95556880 + Silent SNP G G T novel TCGA-B9-4115-01A-01D-1252-08 TCGA-B9-4115-10A-01D-1252-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1c21a098-a845-4933-9153-f44ea58bb752 50da5c23-8dd6-49bd-8316-9d1438d89ee8 . DICER1 NM_030621 exon28 c.C5724A p.A1908A TCGGAGGGCTCTT . 95.0 36.0 468.0 0.0 . 181 . . . none . . PASS Atlas-SNP SIVA1 10572 hgsc.bcm.edu hg19 14 105222013 105222013 + Silent SNP C C T novel TCGA-B9-4115-01A-01D-1252-08 TCGA-B9-4115-10A-01D-1252-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1c21a098-a845-4933-9153-f44ea58bb752 50da5c23-8dd6-49bd-8316-9d1438d89ee8 . SIVA1 NM_006427 exon2 c.C165T p.D55D CCTGGACCACGTG . 314.0 98.0 228.0 0.0 . 12 . . . none . . PASS Atlas-SNP CES4A 283848 hgsc.bcm.edu hg19 16 67038037 67038037 + Missense_Mutation SNP C C A novel TCGA-B9-4115-01A-01D-1252-08 TCGA-B9-4115-10A-01D-1252-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1c21a098-a845-4933-9153-f44ea58bb752 50da5c23-8dd6-49bd-8316-9d1438d89ee8 . CES4A NM_173815 exon9 c.C990A p.D330E AGATGACCCTTTG . 399.0 143.0 284.0 0.0 . 24 . . . none . . PASS Atlas-SNP KAT7 11143 hgsc.bcm.edu hg19 17 47869250 47869250 + Missense_Mutation SNP G G T novel TCGA-B9-4115-01A-01D-1252-08 TCGA-B9-4115-10A-01D-1252-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1c21a098-a845-4933-9153-f44ea58bb752 50da5c23-8dd6-49bd-8316-9d1438d89ee8 . . NM_001199158 exon2 c.G18T p.R6S ACAGAGGAATGCA . 434.0 102.0 322.0 0.0 . . . . . none . . PASS Atlas-SNP ACSBG2 81616 hgsc.bcm.edu hg19 19 6177251 6177251 + Missense_Mutation SNP T T G novel TCGA-B9-4115-01A-01D-1252-08 TCGA-B9-4115-10A-01D-1252-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1c21a098-a845-4933-9153-f44ea58bb752 50da5c23-8dd6-49bd-8316-9d1438d89ee8 ACSBG2,NS,carcinoma,0,4 ACSBG2 NM_030924 exon8 c.T750G p.I250M GTGGATTGCAGGA . 87.0 4.0 109.0 0.0 . 83 . . . none . . PASS Atlas-SNP ITPKC 80271 hgsc.bcm.edu hg19 19 41223385 41223385 + Silent SNP A A T novel TCGA-B9-4115-01A-01D-1252-08 TCGA-B9-4115-10A-01D-1252-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1c21a098-a845-4933-9153-f44ea58bb752 50da5c23-8dd6-49bd-8316-9d1438d89ee8 . ITPKC NM_025194 exon1 c.A345T p.P115P GGAGCCAGACAGG . 201.0 65.0 139.0 0.0 . 36 . . . none . . PASS Atlas-SNP ALDH16A1 126133 hgsc.bcm.edu hg19 19 49971767 49971767 + Missense_Mutation SNP A A T novel TCGA-B9-4115-01A-01D-1252-08 TCGA-B9-4115-10A-01D-1252-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1c21a098-a845-4933-9153-f44ea58bb752 50da5c23-8dd6-49bd-8316-9d1438d89ee8 . ALDH16A1 NM_153329 exon15 c.A2068T p.T690S GGCAACACTGTGG . 542.0 197.0 345.0 0.0 . 54 . . . none . . PASS Atlas-SNP ZNF134 7693 hgsc.bcm.edu hg19 19 58131703 58131703 + Missense_Mutation SNP C C A novel TCGA-B9-4115-01A-01D-1252-08 TCGA-B9-4115-10A-01D-1252-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1c21a098-a845-4933-9153-f44ea58bb752 50da5c23-8dd6-49bd-8316-9d1438d89ee8 . ZNF134 NM_003435 exon3 c.C216A p.H72Q TACACACCATGGA . 82.0 29.0 293.0 1.0 . 34 . . . none . . PASS Atlas-SNP HTATSF1 27336 hgsc.bcm.edu hg19 X 135594033 135594033 + Missense_Mutation SNP A A T novel TCGA-B9-4115-01A-01D-1252-08 TCGA-B9-4115-10A-01D-1252-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1c21a098-a845-4933-9153-f44ea58bb752 50da5c23-8dd6-49bd-8316-9d1438d89ee8 . HTATSF1 NM_001163280 exon10 c.A2129T p.E710V ATGAGGAGGAAGA . 17.0 14.0 131.0 1.0 . 66 . . . none . . PASS Atlas-SNP CEP192 55125 hgsc.bcm.edu hg19 18 13049324 13049324 + Frame_Shift_Del DEL T T - novel TCGA-B9-4115-01A-01D-1252-08 TCGA-B9-4115-10A-01D-1252-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1c21a098-a845-4933-9153-f44ea58bb752 50da5c23-8dd6-49bd-8316-9d1438d89ee8 . CEP192 NM_032142 exon16 c.2533delG p.V845fs . . 61.0 19.0 249.0 0.0 . 340 . 0.311475 0 none . . PASS Atlas-INDEL BTN3A2 11118 hgsc.bcm.edu hg19 6 26370805 26370805 + Frame_Shift_Del DEL A A - novel TCGA-B9-4115-01A-01D-1252-08 TCGA-B9-4115-10A-01D-1252-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1c21a098-a845-4933-9153-f44ea58bb752 50da5c23-8dd6-49bd-8316-9d1438d89ee8 . BTN3A2 NM_007047 exon5 c.688delG p.E230fs . . 196.0 70.0 253.0 0.0 . 44 . 0.357143 0 none . . PASS Atlas-INDEL ERF 2077 hgsc.bcm.edu hg19 19 42752789 42752790 + In_Frame_Ins INS - - AAA novel TCGA-B9-4115-01A-01D-1252-08 TCGA-B9-4115-10A-01D-1252-08 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1c21a098-a845-4933-9153-f44ea58bb752 50da5c23-8dd6-49bd-8316-9d1438d89ee8 . ERF NM_006494 exon4 c.1475_1476insTTT p.C492delinsFC . . 249.0 60.0 190.0 0.0 . 47 . 0.240964 0 none . . PASS Atlas-INDEL COX7A1 1346 hgsc.bcm.edu hg19 19 36642400 36642402 + In_Frame_Del DEL TGT TGT - novel TCGA-B9-4115-01A-01D-1252-08 TCGA-B9-4115-10A-01D-1252-08 TGT TGT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1c21a098-a845-4933-9153-f44ea58bb752 50da5c23-8dd6-49bd-8316-9d1438d89ee8 . COX7A1 NM_001864 exon3 c.150_152del p.50_51del . . 242.0 64.0 194.0 0.0 . 9 . 0.264463 0 none . . PASS Atlas-INDEL OSBPL5 114879 hgsc.bcm.edu hg19 11 3143300 3143300 + Frame_Shift_Del DEL T T - novel TCGA-B9-4115-01A-01D-1252-08 TCGA-B9-4115-10A-01D-1252-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1c21a098-a845-4933-9153-f44ea58bb752 50da5c23-8dd6-49bd-8316-9d1438d89ee8 . OSBPL5 NM_145638 exon5 c.330delG p.K110fs . . 25.0 11.0 9.0 0.0 . 78 . 0.44 0 none . . PASS Atlas-INDEL MAST4 375449 hgsc.bcm.edu hg19 5 66438012 66438022 + Frame_Shift_Del DEL AGGCAGAATTT AGGCAGAATTT - novel TCGA-B9-4115-01A-01D-1252-08 TCGA-B9-4115-10A-01D-1252-08 AGGCAGAATTT AGGCAGAATTT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1c21a098-a845-4933-9153-f44ea58bb752 50da5c23-8dd6-49bd-8316-9d1438d89ee8 . MAST4 NM_001164664 exon20 c.2563_2573del p.855_858del . . 41.0 16.0 271.0 0.0 . 218 . 0.390244 0 none . . PASS Atlas-INDEL HIST1H2AD 3013 hgsc.bcm.edu hg19 6 26199108 26199109 + Frame_Shift_Del DEL CA CA - novel TCGA-B9-4115-01A-01D-1252-08 TCGA-B9-4115-10A-01D-1252-08 CA CA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1c21a098-a845-4933-9153-f44ea58bb752 50da5c23-8dd6-49bd-8316-9d1438d89ee8 . HIST1H2AD NM_021065 exon1 c.364_365del p.122_122del . . 285.0 27.0 194.0 0.0 . 20 . 0.0947368 0 none . . PASS Atlas-INDEL CTBP1 1487 hgsc.bcm.edu hg19 4 1232016 1232016 + Frame_Shift_Del DEL A A - novel TCGA-B9-4115-01A-01D-1252-08 TCGA-B9-4115-10A-01D-1252-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1c21a098-a845-4933-9153-f44ea58bb752 50da5c23-8dd6-49bd-8316-9d1438d89ee8 . CTBP1 NM_001328 exon2 c.151delG p.V51fs . . 275.0 80.0 164.0 0.0 . 30 . 0.290909 0 none . . PASS Atlas-INDEL KIAA0430 9665 hgsc.bcm.edu hg19 16 15716936 15716936 + Frame_Shift_Del DEL A A - novel TCGA-B9-4115-01A-01D-1252-08 TCGA-B9-4115-10A-01D-1252-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1c21a098-a845-4933-9153-f44ea58bb752 50da5c23-8dd6-49bd-8316-9d1438d89ee8 . KIAA0430 NM_001184998 exon11 c.2316delC p.F772fs . . 195.0 63.0 253.0 0.0 . 154 . 0.323077 0 none . . PASS Atlas-INDEL