Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq TVarRat NVarRat dbSNP_Strength dbSNP_AF dbSNP_PopFreq Confidence Algorithm CCNL2 81669 hgsc.bcm.edu hg19 1 1334456 1334456 + Silent SNP G G A novel TCGA-B3-4104-01A-01D-1458-08 TCGA-B3-4104-10A-01D-1458-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 368382d0-ad7f-4735-b04a-e806d2a2d9a4 23886794-9d4c-4511-82ee-830db88796d5 . CCNL2 NM_030937 exon1 c.C231T p.L77L CACGCGGAGGTCG . 47.0 16.0 46.0 0.0 . 54 . . . none . . PASS Atlas-SNP CCNL2 81669 hgsc.bcm.edu hg19 1 1334592 1334592 + Missense_Mutation SNP G G A novel TCGA-B3-4104-01A-01D-1458-08 TCGA-B3-4104-10A-01D-1458-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 368382d0-ad7f-4735-b04a-e806d2a2d9a4 23886794-9d4c-4511-82ee-830db88796d5 . CCNL2 NM_030937 exon1 c.C95T p.S32L CCCTGCGACCCTG . 63.0 28.0 49.0 0.0 . 54 . . . none . . PASS Atlas-SNP PLEKHG5 57449 hgsc.bcm.edu hg19 1 6528353 6528353 + Missense_Mutation SNP C C T novel TCGA-B3-4104-01A-01D-1458-08 TCGA-B3-4104-10A-01D-1458-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 368382d0-ad7f-4735-b04a-e806d2a2d9a4 23886794-9d4c-4511-82ee-830db88796d5 . PLEKHG5 NM_001265592 exon21 c.G2780A p.R927Q GGAACTCGTGGGG . 18.0 8.0 25.0 0.0 . 66 . . . none . . PASS Atlas-SNP THRAP3 9967 hgsc.bcm.edu hg19 1 36748232 36748232 + Missense_Mutation SNP G G A rs148045717 TCGA-B3-4104-01A-01D-1458-08 TCGA-B3-4104-10A-01D-1458-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 368382d0-ad7f-4735-b04a-e806d2a2d9a4 23886794-9d4c-4511-82ee-830db88796d5 THRAP3,NS,malignant_melanoma,+1,1 THRAP3 NM_005119 exon3 c.G68A p.R23H GATCTCGTTCTCG . 182.0 82.0 91.0 0.0 . 93 . . . weak G|1.000;A|0.000 0.000 PASS Atlas-SNP MACF1 23499 hgsc.bcm.edu hg19 1 39910503 39910503 + Missense_Mutation SNP G G C novel TCGA-B3-4104-01A-01D-1458-08 TCGA-B3-4104-10A-01D-1458-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 368382d0-ad7f-4735-b04a-e806d2a2d9a4 23886794-9d4c-4511-82ee-830db88796d5 . MACF1 NM_012090 exon77 c.G13424C p.R4475T AAGAAAGAAAGGT . 109.0 49.0 83.0 0.0 . 909 . . . none . . PASS Atlas-SNP ATP1A1 476 hgsc.bcm.edu hg19 1 116931284 116931284 + Missense_Mutation SNP G G A novel TCGA-B3-4104-01A-01D-1458-08 TCGA-B3-4104-10A-01D-1458-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 368382d0-ad7f-4735-b04a-e806d2a2d9a4 23886794-9d4c-4511-82ee-830db88796d5 . ATP1A1 NM_000701 exon6 c.G526A p.E176K AATGGTGAGAAAA . 251.0 98.0 175.0 0.0 . 87 . . . none . . PASS Atlas-SNP NBPF14 25832 hgsc.bcm.edu hg19 1 148025829 148025829 + Missense_Mutation SNP C C T novel TCGA-B3-4104-01A-01D-1458-08 TCGA-B3-4104-10A-01D-1458-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 368382d0-ad7f-4735-b04a-e806d2a2d9a4 23886794-9d4c-4511-82ee-830db88796d5 . NBPF14 NM_015383 exon1 c.G3A p.M1I CCTCAGCATAGAT . 1037.0 184.0 879.0 1.0 . 107 . . . none . . PASS Atlas-SNP TDRD10 126668 hgsc.bcm.edu hg19 1 154493835 154493835 + Silent SNP G G A novel TCGA-B3-4104-01A-01D-1458-08 TCGA-B3-4104-10A-01D-1458-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 368382d0-ad7f-4735-b04a-e806d2a2d9a4 23886794-9d4c-4511-82ee-830db88796d5 . TDRD10 NM_182499 exon6 c.G249A p.V83V GAAAGTGACACTT . 368.0 35.0 311.0 0.0 . 48 . . . none . . PASS Atlas-SNP LRRN2 10446 hgsc.bcm.edu hg19 1 204587907 204587907 + Missense_Mutation SNP C C T novel TCGA-B3-4104-01A-01D-1458-08 TCGA-B3-4104-10A-01D-1458-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 368382d0-ad7f-4735-b04a-e806d2a2d9a4 23886794-9d4c-4511-82ee-830db88796d5 . LRRN2 NM_006338 exon3 c.G1214A p.R405H GGGAGGCGCTGGA . 116.0 8.0 140.0 0.0 . 81 . . . none . . PASS Atlas-SNP SLC26A9 115019 hgsc.bcm.edu hg19 1 205888030 205888030 + Missense_Mutation SNP C C T novel TCGA-B3-4104-01A-01D-1458-08 TCGA-B3-4104-10A-01D-1458-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 368382d0-ad7f-4735-b04a-e806d2a2d9a4 23886794-9d4c-4511-82ee-830db88796d5 . SLC26A9 NM_134325 exon19 c.G2194A p.D732N CTGCGTCATGTAT . 646.0 307.0 502.0 2.0 . 176 . . . none . . PASS Atlas-SNP ETAA1 54465 hgsc.bcm.edu hg19 2 67631299 67631299 + Silent SNP A A G novel TCGA-B3-4104-01A-01D-1458-08 TCGA-B3-4104-10A-01D-1458-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 368382d0-ad7f-4735-b04a-e806d2a2d9a4 23886794-9d4c-4511-82ee-830db88796d5 . ETAA1 NM_019002 exon5 c.A1485G p.Q495Q AATTCAAAATTGT . 89.0 44.0 51.0 0.0 . 88 . . . none . . PASS Atlas-SNP CCDC108 255101 hgsc.bcm.edu hg19 2 219886640 219886640 + Missense_Mutation SNP C C T novel TCGA-B3-4104-01A-01D-1458-08 TCGA-B3-4104-10A-01D-1458-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 368382d0-ad7f-4735-b04a-e806d2a2d9a4 23886794-9d4c-4511-82ee-830db88796d5 . CCDC108 NM_194302 exon18 c.G2992A p.E998K CCAGCTCCTTTTC . 159.0 90.0 279.0 0.0 . 208 . . . none . . PASS Atlas-SNP EFHB 151651 hgsc.bcm.edu hg19 3 19925989 19925989 + Silent SNP G G C novel TCGA-B3-4104-01A-01D-1458-08 TCGA-B3-4104-10A-01D-1458-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 368382d0-ad7f-4735-b04a-e806d2a2d9a4 23886794-9d4c-4511-82ee-830db88796d5 . EFHB NM_144715 exon11 c.C2052G p.L684L TGTCCGGAGAGTC . 190.0 85.0 129.0 0.0 . 186 . . . none . . PASS Atlas-SNP COL6A6 131873 hgsc.bcm.edu hg19 3 130287049 130287049 + Missense_Mutation SNP G G A novel TCGA-B3-4104-01A-01D-1458-08 TCGA-B3-4104-10A-01D-1458-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 368382d0-ad7f-4735-b04a-e806d2a2d9a4 23886794-9d4c-4511-82ee-830db88796d5 COL6A6,colon,carcinoma,0,1 COL6A6 NM_001102608 exon5 c.G2002A p.D668N TTCAGCGACATCA . 330.0 152.0 239.0 0.0 . 497 . . . none . . PASS Atlas-SNP FGFR3 2261 hgsc.bcm.edu hg19 4 1803568 1803568 + Missense_Mutation SNP C C G rs121913483 bycluster TCGA-B3-4104-01A-01D-1458-08 TCGA-B3-4104-10A-01D-1458-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 368382d0-ad7f-4735-b04a-e806d2a2d9a4 23886794-9d4c-4511-82ee-830db88796d5 FGFR3_ENST00000340107,bladder,carcinoma,0,1251 FGFR3 NM_001163213 exon7 c.C746G p.S249C AGCGCTCCCCGCA . 32.0 14.0 44.0 1.0 . 3320 . . . weak . . PASS Atlas-SNP UNC5C 8633 hgsc.bcm.edu hg19 4 96127913 96127913 + Missense_Mutation SNP G G T novel TCGA-B3-4104-01A-01D-1458-08 TCGA-B3-4104-10A-01D-1458-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 368382d0-ad7f-4735-b04a-e806d2a2d9a4 23886794-9d4c-4511-82ee-830db88796d5 UNC5C,NS,carcinoma,0,1 UNC5C NM_003728 exon11 c.C1768A p.P590T CCACAGGGGTCAA . 106.0 20.0 87.0 0.0 . 141 . . . none . . PASS Atlas-SNP EXOSC9 5393 hgsc.bcm.edu hg19 4 122722582 122722582 + Missense_Mutation SNP G G A novel TCGA-B3-4104-01A-01D-1458-08 TCGA-B3-4104-10A-01D-1458-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 368382d0-ad7f-4735-b04a-e806d2a2d9a4 23886794-9d4c-4511-82ee-830db88796d5 . EXOSC9 NM_001034194 exon1 c.G3A p.M1I CACCATGAAGGAA . 172.0 69.0 193.0 0.0 . 51 . . . none . . PASS Atlas-SNP PCDHGA3 56112 hgsc.bcm.edu hg19 5 140725009 140725009 + Missense_Mutation SNP C C T novel TCGA-B3-4104-01A-01D-1458-08 TCGA-B3-4104-10A-01D-1458-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 368382d0-ad7f-4735-b04a-e806d2a2d9a4 23886794-9d4c-4511-82ee-830db88796d5 . PCDHGA3 NM_032011 exon1 c.C1409T p.S470F GAGCCTCCATCTT . 308.0 143.0 231.0 0.0 . 246 . . . none . . PASS Atlas-SNP CLINT1 9685 hgsc.bcm.edu hg19 5 157240138 157240138 + Missense_Mutation SNP C C G novel TCGA-B3-4104-01A-01D-1458-08 TCGA-B3-4104-10A-01D-1458-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 368382d0-ad7f-4735-b04a-e806d2a2d9a4 23886794-9d4c-4511-82ee-830db88796d5 . CLINT1 NM_014666 exon5 c.G450C p.K150N TGCTTTCTTTCGC . 168.0 83.0 125.0 0.0 . 86 . . . none . . PASS Atlas-SNP OR14J1 442191 hgsc.bcm.edu hg19 6 29274483 29274483 + Missense_Mutation SNP C C T novel TCGA-B3-4104-01A-01D-1458-08 TCGA-B3-4104-10A-01D-1458-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 368382d0-ad7f-4735-b04a-e806d2a2d9a4 23886794-9d4c-4511-82ee-830db88796d5 . OR14J1 NM_030946 exon1 c.C17T p.S6L TGACTTCAATGAG . 408.0 159.0 258.0 0.0 . 43 . . . none . . PASS Atlas-SNP BRD2 6046 hgsc.bcm.edu hg19 6 32945959 32945959 + Silent SNP C C G novel TCGA-B3-4104-01A-01D-1458-08 TCGA-B3-4104-10A-01D-1458-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 368382d0-ad7f-4735-b04a-e806d2a2d9a4 23886794-9d4c-4511-82ee-830db88796d5 . BRD2 NM_005104 exon10 c.C1635G p.P545P CAAGCCCAAGAGG . 91.0 36.0 99.0 0.0 . 70 . . . none . . PASS Atlas-SNP BRD2 6046 hgsc.bcm.edu hg19 6 32947799 32947799 + Nonsense_Mutation SNP C C G novel TCGA-B3-4104-01A-01D-1458-08 TCGA-B3-4104-10A-01D-1458-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 368382d0-ad7f-4735-b04a-e806d2a2d9a4 23886794-9d4c-4511-82ee-830db88796d5 . BRD2 NM_001199455 exon11 c.C2141G p.S714X GTGATTCAAACCC . 105.0 44.0 72.0 0.0 . 70 . . . none . . PASS Atlas-SNP CHRM2 1129 hgsc.bcm.edu hg19 7 136700056 136700056 + Missense_Mutation SNP G G T novel TCGA-B3-4104-01A-01D-1458-08 TCGA-B3-4104-10A-01D-1458-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 368382d0-ad7f-4735-b04a-e806d2a2d9a4 23886794-9d4c-4511-82ee-830db88796d5 . CHRM2 NM_001006632 exon3 c.G444T p.W148C TGCCTGGGTCCTC . 145.0 26.0 120.0 0.0 . 167 . . . none . . PASS Atlas-SNP MLL3 58508 hgsc.bcm.edu hg19 7 151879016 151879016 + Nonsense_Mutation SNP G G A novel TCGA-B3-4104-01A-01D-1458-08 TCGA-B3-4104-10A-01D-1458-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 368382d0-ad7f-4735-b04a-e806d2a2d9a4 23886794-9d4c-4511-82ee-830db88796d5 MLL3_ENST00000355193,NS,carcinoma,0,2 MLL3 NM_170606 exon36 c.C5929T p.Q1977X GAAATTGATCTGT . 722.0 115.0 536.0 0.0 . 1564 . . . none . . PASS Atlas-SNP ERLIN2 11160 hgsc.bcm.edu hg19 8 37597912 37597912 + Missense_Mutation SNP G G A novel TCGA-B3-4104-01A-01D-1458-08 TCGA-B3-4104-10A-01D-1458-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 368382d0-ad7f-4735-b04a-e806d2a2d9a4 23886794-9d4c-4511-82ee-830db88796d5 . ERLIN2 NM_001003791 exon3 c.G137A p.G46D CCAGCGGCCCTGG . 521.0 25.0 415.0 0.0 . 27 . . . none . . PASS Atlas-SNP ST18 9705 hgsc.bcm.edu hg19 8 53028901 53028901 + Silent SNP C C T novel TCGA-B3-4104-01A-01D-1458-08 TCGA-B3-4104-10A-01D-1458-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 368382d0-ad7f-4735-b04a-e806d2a2d9a4 23886794-9d4c-4511-82ee-830db88796d5 . ST18 NM_014682 exon25 c.G2937A p.L979L CTCTTTCAGCAGA . 175.0 69.0 139.0 0.0 . 212 . . . none . . PASS Atlas-SNP TYRP1 7306 hgsc.bcm.edu hg19 9 12704628 12704628 + Missense_Mutation SNP C C A novel TCGA-B3-4104-01A-01D-1458-08 TCGA-B3-4104-10A-01D-1458-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 368382d0-ad7f-4735-b04a-e806d2a2d9a4 23886794-9d4c-4511-82ee-830db88796d5 . TYRP1 NM_000550 exon6 c.C1184A p.P395Q TGTCTCCAAATGA . 380.0 111.0 188.0 0.0 . 60 . . . none . . PASS Atlas-SNP C9orf24 84688 hgsc.bcm.edu hg19 9 34397497 34397497 + Silent SNP C C T novel TCGA-B3-4104-01A-01D-1458-08 TCGA-B3-4104-10A-01D-1458-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 368382d0-ad7f-4735-b04a-e806d2a2d9a4 23886794-9d4c-4511-82ee-830db88796d5 . C9orf24 NM_032596 exon1 c.G135A p.P45P ACTTACCGGAGTC . 308.0 87.0 215.0 0.0 . 15 . . . none . . PASS Atlas-SNP ALDH1B1 219 hgsc.bcm.edu hg19 9 38396007 38396007 + Missense_Mutation SNP C C T novel TCGA-B3-4104-01A-01D-1458-08 TCGA-B3-4104-10A-01D-1458-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 368382d0-ad7f-4735-b04a-e806d2a2d9a4 23886794-9d4c-4511-82ee-830db88796d5 . ALDH1B1 NM_000692 exon2 c.C262T p.R88C GCCTTCCGCCTGG . 313.0 22.0 221.0 0.0 . 50 . . . none . . PASS Atlas-SNP NEBL 10529 hgsc.bcm.edu hg19 10 21309109 21309109 + Silent SNP G G A novel TCGA-B3-4104-01A-01D-1458-08 TCGA-B3-4104-10A-01D-1458-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 368382d0-ad7f-4735-b04a-e806d2a2d9a4 23886794-9d4c-4511-82ee-830db88796d5 . NEBL NM_001173484 exon3 c.C186T p.F62F CGTGGTGAAGGAC . 193.0 11.0 153.0 0.0 . 199 . . . none . . PASS Atlas-SNP SGMS1 259230 hgsc.bcm.edu hg19 10 52071078 52071078 + Missense_Mutation SNP T T C novel TCGA-B3-4104-01A-01D-1458-08 TCGA-B3-4104-10A-01D-1458-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 368382d0-ad7f-4735-b04a-e806d2a2d9a4 23886794-9d4c-4511-82ee-830db88796d5 . SGMS1 NM_147156 exon9 c.A839G p.Y280C TACAGATAGTCCC . 129.0 57.0 113.0 0.0 . 40 . . . none . . PASS Atlas-SNP IDE 3416 hgsc.bcm.edu hg19 10 94297234 94297234 + Missense_Mutation SNP G G C novel TCGA-B3-4104-01A-01D-1458-08 TCGA-B3-4104-10A-01D-1458-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 368382d0-ad7f-4735-b04a-e806d2a2d9a4 23886794-9d4c-4511-82ee-830db88796d5 . IDE NM_004969 exon2 c.C172G p.P58A CTTCAGGAGACTT . 210.0 85.0 166.0 0.0 . 77 . . . none . . PASS Atlas-SNP RIC8A 60626 hgsc.bcm.edu hg19 11 209483 209483 + Missense_Mutation SNP T T A novel TCGA-B3-4104-01A-01D-1458-08 TCGA-B3-4104-10A-01D-1458-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 368382d0-ad7f-4735-b04a-e806d2a2d9a4 23886794-9d4c-4511-82ee-830db88796d5 . RIC8A NM_021932 exon3 c.T209A p.V70D AGAGTGTCCGAAT . 107.0 23.0 142.0 0.0 . 45 . . . none . . PASS Atlas-SNP APLNR 187 hgsc.bcm.edu hg19 11 57004337 57004337 + Missense_Mutation SNP G G C novel TCGA-B3-4104-01A-01D-1458-08 TCGA-B3-4104-10A-01D-1458-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 368382d0-ad7f-4735-b04a-e806d2a2d9a4 23886794-9d4c-4511-82ee-830db88796d5 . APLNR NM_005161 exon1 c.C142G p.L48V GCACCAGACCGTT . 149.0 70.0 181.0 0.0 . 62 . . . none . . PASS Atlas-SNP MS4A15 219995 hgsc.bcm.edu hg19 11 60540926 60540926 + Missense_Mutation SNP T T A novel TCGA-B3-4104-01A-01D-1458-08 TCGA-B3-4104-10A-01D-1458-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 368382d0-ad7f-4735-b04a-e806d2a2d9a4 23886794-9d4c-4511-82ee-830db88796d5 . MS4A15 NM_001098835 exon5 c.T467A p.I156N CAGCCATTCTGCT . 70.0 39.0 71.0 0.0 . 37 . . . none . . PASS Atlas-SNP VWCE 220001 hgsc.bcm.edu hg19 11 61026184 61026184 + Missense_Mutation SNP G G A novel TCGA-B3-4104-01A-01D-1458-08 TCGA-B3-4104-10A-01D-1458-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 368382d0-ad7f-4735-b04a-e806d2a2d9a4 23886794-9d4c-4511-82ee-830db88796d5 . VWCE NM_152718 exon20 c.C2831T p.P944L CCCACTGGGGGCT . 178.0 55.0 224.0 0.0 . 84 . . . none . . PASS Atlas-SNP STARD10 10809 hgsc.bcm.edu hg19 11 72470333 72470333 + Missense_Mutation SNP C C G novel TCGA-B3-4104-01A-01D-1458-08 TCGA-B3-4104-10A-01D-1458-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 368382d0-ad7f-4735-b04a-e806d2a2d9a4 23886794-9d4c-4511-82ee-830db88796d5 . STARD10 NM_006645 exon3 c.G301C p.E101Q AAGTCTCAATGAC . 127.0 64.0 128.0 0.0 . 25 . . . none . . PASS Atlas-SNP ARRB1 408 hgsc.bcm.edu hg19 11 74985127 74985127 + Missense_Mutation SNP G G C novel TCGA-B3-4104-01A-01D-1458-08 TCGA-B3-4104-10A-01D-1458-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 368382d0-ad7f-4735-b04a-e806d2a2d9a4 23886794-9d4c-4511-82ee-830db88796d5 . ARRB1 NM_020251 exon11 c.C905G p.S302C GTGCTAGAGGCCA . 366.0 162.0 382.0 0.0 . 37 . . . none . . PASS Atlas-SNP RAPGEF3 10411 hgsc.bcm.edu hg19 12 48142257 48142257 + Missense_Mutation SNP G G A novel TCGA-B3-4104-01A-01D-1458-08 TCGA-B3-4104-10A-01D-1458-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 368382d0-ad7f-4735-b04a-e806d2a2d9a4 23886794-9d4c-4511-82ee-830db88796d5 . RAPGEF3 NM_001098531 exon12 c.C1223T p.S408F GCACTGGAATCTG . 82.0 30.0 87.0 0.0 . 98 . . . none . . PASS Atlas-SNP MLL2 8085 hgsc.bcm.edu hg19 12 49425839 49425839 + Nonsense_Mutation SNP G G A novel TCGA-B3-4104-01A-01D-1458-08 TCGA-B3-4104-10A-01D-1458-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 368382d0-ad7f-4735-b04a-e806d2a2d9a4 23886794-9d4c-4511-82ee-830db88796d5 . MLL2 NM_003482 exon39 c.C12649T p.Q4217X GCTGCTGAGGACT . 81.0 36.0 96.0 0.0 . 1173 . . . none . . PASS Atlas-SNP MLL2 8085 hgsc.bcm.edu hg19 12 49426526 49426526 + Nonsense_Mutation SNP G G A novel TCGA-B3-4104-01A-01D-1458-08 TCGA-B3-4104-10A-01D-1458-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 368382d0-ad7f-4735-b04a-e806d2a2d9a4 23886794-9d4c-4511-82ee-830db88796d5 MLL2,NS,lymphoid_neoplasm,0,1 MLL2 NM_003482 exon39 c.C11962T p.Q3988X GTTGCTGAGGAGA . 31.0 13.0 42.0 0.0 . 1173 . . . none . . PASS Atlas-SNP INSM2 84684 hgsc.bcm.edu hg19 14 36005048 36005048 + Silent SNP C C T novel TCGA-B3-4104-01A-01D-1458-08 TCGA-B3-4104-10A-01D-1458-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 368382d0-ad7f-4735-b04a-e806d2a2d9a4 23886794-9d4c-4511-82ee-830db88796d5 . INSM2 NM_032594 exon1 c.C1590T p.C530C GCACTGCCCGTCC . 116.0 23.0 133.0 0.0 . 39 . . . none . . PASS Atlas-SNP FKBP3 2287 hgsc.bcm.edu hg19 14 45603575 45603575 + Silent SNP G G A novel TCGA-B3-4104-01A-01D-1458-08 TCGA-B3-4104-10A-01D-1458-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 368382d0-ad7f-4735-b04a-e806d2a2d9a4 23886794-9d4c-4511-82ee-830db88796d5 . FKBP3 NM_002013 exon1 c.C85T p.L29L CCTGCAGAAACTT . 161.0 59.0 215.0 0.0 . 21 . . . none . . PASS Atlas-SNP ZFP36L1 677 hgsc.bcm.edu hg19 14 69256349 69256349 + Silent SNP C C G novel TCGA-B3-4104-01A-01D-1458-08 TCGA-B3-4104-10A-01D-1458-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 368382d0-ad7f-4735-b04a-e806d2a2d9a4 23886794-9d4c-4511-82ee-830db88796d5 . ZFP36L1 NM_001244701 exon3 c.G1125C p.L375L GCTGCTCAGGTAG . 196.0 81.0 229.0 0.0 . 47 . . . none . . PASS Atlas-SNP MLH3 27030 hgsc.bcm.edu hg19 14 75514890 75514890 + Missense_Mutation SNP G G C novel TCGA-B3-4104-01A-01D-1458-08 TCGA-B3-4104-10A-01D-1458-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 368382d0-ad7f-4735-b04a-e806d2a2d9a4 23886794-9d4c-4511-82ee-830db88796d5 MLH3,NS,carcinoma,0,1 MLH3 NM_014381 exon2 c.C1469G p.S490C AGGAAAGATTTTT . 358.0 134.0 223.0 0.0 . 200 . . . none . . PASS Atlas-SNP GABRB3 2562 hgsc.bcm.edu hg19 15 26793190 26793190 + Nonsense_Mutation SNP G G C novel TCGA-B3-4104-01A-01D-1458-08 TCGA-B3-4104-10A-01D-1458-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 368382d0-ad7f-4735-b04a-e806d2a2d9a4 23886794-9d4c-4511-82ee-830db88796d5 . GABRB3 NM_021912 exon9 c.C1172G p.S391X ATTGCTGAATTCC . 273.0 125.0 245.0 0.0 . 338 . . . none . . PASS Atlas-SNP DMXL2 23312 hgsc.bcm.edu hg19 15 51857284 51857284 + Splice_Site SNP C C A novel TCGA-B3-4104-01A-01D-1458-08 TCGA-B3-4104-10A-01D-1458-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 368382d0-ad7f-4735-b04a-e806d2a2d9a4 23886794-9d4c-4511-82ee-830db88796d5 . DMXL2 NM_015263 exon5 c.364+1G>T . TAAATACCTTGAG . 55.0 24.0 31.0 0.0 . 262 . . . none . . PASS Atlas-SNP CX3CL1 6376 hgsc.bcm.edu hg19 16 57413597 57413597 + Missense_Mutation SNP C C T novel TCGA-B3-4104-01A-01D-1458-08 TCGA-B3-4104-10A-01D-1458-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 368382d0-ad7f-4735-b04a-e806d2a2d9a4 23886794-9d4c-4511-82ee-830db88796d5 . CX3CL1 NM_002996 exon2 c.C122T p.S41L TGACATCAAAGAT . 109.0 6.0 108.0 0.0 . 27 . . . none . . PASS Atlas-SNP WDR59 79726 hgsc.bcm.edu hg19 16 74990405 74990405 + Missense_Mutation SNP G G A novel TCGA-B3-4104-01A-01D-1458-08 TCGA-B3-4104-10A-01D-1458-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 368382d0-ad7f-4735-b04a-e806d2a2d9a4 23886794-9d4c-4511-82ee-830db88796d5 . WDR59 NM_030581 exon3 c.C208T p.H70Y TGTCATGAGGATT . 123.0 42.0 94.0 0.0 . 66 . . . none . . PASS Atlas-SNP ZDHHC7 55625 hgsc.bcm.edu hg19 16 85010706 85010706 + Missense_Mutation SNP C C T novel TCGA-B3-4104-01A-01D-1458-08 TCGA-B3-4104-10A-01D-1458-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 368382d0-ad7f-4735-b04a-e806d2a2d9a4 23886794-9d4c-4511-82ee-830db88796d5 . ZDHHC7 NM_001145548 exon8 c.G856A p.E286K CCGTCTCGTCGTT . 285.0 130.0 223.0 0.0 . 55 . . . none . . PASS Atlas-SNP ITGAE 3682 hgsc.bcm.edu hg19 17 3659152 3659152 + Missense_Mutation SNP A A T rs376670383 alternate_allele TCGA-B3-4104-01A-01D-1458-08 TCGA-B3-4104-10A-01D-1458-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 368382d0-ad7f-4735-b04a-e806d2a2d9a4 23886794-9d4c-4511-82ee-830db88796d5 . ITGAE NM_002208 exon11 c.T1211A p.I404N AAGCCAATCTGTG . 15.0 8.0 8.0 0.0 . 96 . . . alt . . PASS Atlas-SNP TP53 7157 hgsc.bcm.edu hg19 17 7579415 7579415 + Nonsense_Mutation SNP C C T novel TCGA-B3-4104-01A-01D-1458-08 TCGA-B3-4104-10A-01D-1458-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 368382d0-ad7f-4735-b04a-e806d2a2d9a4 23886794-9d4c-4511-82ee-830db88796d5 TP53_ENST00000455263,NS,carcinoma,+1,10 TP53 NM_000546 exon4 c.G272A p.W91X AGGGGCCAGGAGG . 143.0 23.0 128.0 0.0 . 33396 . . . none . . PASS Atlas-SNP KRT13 3860 hgsc.bcm.edu hg19 17 39659037 39659037 + Missense_Mutation SNP T T A novel TCGA-B3-4104-01A-01D-1458-08 TCGA-B3-4104-10A-01D-1458-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 368382d0-ad7f-4735-b04a-e806d2a2d9a4 23886794-9d4c-4511-82ee-830db88796d5 . KRT13 NM_002274 exon5 c.A925T p.T309S TGTTGGTAGACAC . 447.0 195.0 456.0 0.0 . 72 . . . none . . PASS Atlas-SNP DBF4B 80174 hgsc.bcm.edu hg19 17 42828063 42828063 + Silent SNP C C T novel TCGA-B3-4104-01A-01D-1458-08 TCGA-B3-4104-10A-01D-1458-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 368382d0-ad7f-4735-b04a-e806d2a2d9a4 23886794-9d4c-4511-82ee-830db88796d5 . DBF4B NM_145663 exon14 c.C1290T p.L430L AACCCTCCTGCCG . 131.0 59.0 132.0 0.0 . 66 . . . none . . PASS Atlas-SNP EPN3 55040 hgsc.bcm.edu hg19 17 48615544 48615544 + Missense_Mutation SNP G G A novel TCGA-B3-4104-01A-01D-1458-08 TCGA-B3-4104-10A-01D-1458-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 368382d0-ad7f-4735-b04a-e806d2a2d9a4 23886794-9d4c-4511-82ee-830db88796d5 . EPN3 NM_017957 exon3 c.G667A p.E223K AGCCGTGAGGAGG . 43.0 29.0 63.0 0.0 . 32 . . . none . . PASS Atlas-SNP EPN3 55040 hgsc.bcm.edu hg19 17 48616322 48616322 + Missense_Mutation SNP G G C novel TCGA-B3-4104-01A-01D-1458-08 TCGA-B3-4104-10A-01D-1458-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 368382d0-ad7f-4735-b04a-e806d2a2d9a4 23886794-9d4c-4511-82ee-830db88796d5 . EPN3 NM_017957 exon4 c.G759C p.E253D GCACGAGAAGGTA . 24.0 11.0 48.0 0.0 . 32 . . . none . . PASS Atlas-SNP SPATA20 64847 hgsc.bcm.edu hg19 17 48628090 48628090 + Missense_Mutation SNP G G A novel TCGA-B3-4104-01A-01D-1458-08 TCGA-B3-4104-10A-01D-1458-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 368382d0-ad7f-4735-b04a-e806d2a2d9a4 23886794-9d4c-4511-82ee-830db88796d5 . SPATA20 NM_022827 exon11 c.G1195A p.E399K AGCGCAGAAGATG . 450.0 205.0 323.0 1.0 . 59 . . . none . . PASS Atlas-SNP SPATA20 64847 hgsc.bcm.edu hg19 17 48628385 48628385 + Silent SNP G G A novel TCGA-B3-4104-01A-01D-1458-08 TCGA-B3-4104-10A-01D-1458-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 368382d0-ad7f-4735-b04a-e806d2a2d9a4 23886794-9d4c-4511-82ee-830db88796d5 . SPATA20 NM_022827 exon12 c.G1410A p.Q470Q GGGCCAGAATGTG . 145.0 67.0 100.0 0.0 . 59 . . . none . . PASS Atlas-SNP TEX2 55852 hgsc.bcm.edu hg19 17 62238165 62238165 + Missense_Mutation SNP C C G novel TCGA-B3-4104-01A-01D-1458-08 TCGA-B3-4104-10A-01D-1458-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 368382d0-ad7f-4735-b04a-e806d2a2d9a4 23886794-9d4c-4511-82ee-830db88796d5 . TEX2 NM_018469 exon8 c.G2821C p.E941Q ACCCTTCTTTGCC . 1011.0 701.0 408.0 0.0 . 89 . . . none . . PASS Atlas-SNP SLC38A10 124565 hgsc.bcm.edu hg19 17 79249777 79249777 + Missense_Mutation SNP C C T novel TCGA-B3-4104-01A-01D-1458-08 TCGA-B3-4104-10A-01D-1458-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 368382d0-ad7f-4735-b04a-e806d2a2d9a4 23886794-9d4c-4511-82ee-830db88796d5 . SLC38A10 NM_001037984 exon8 c.G904A p.E302K GCTGCTCACACAG . 361.0 77.0 249.0 0.0 . 133 . . . none . . PASS Atlas-SNP DSC2 1824 hgsc.bcm.edu hg19 18 28660162 28660162 + Missense_Mutation SNP G G C novel TCGA-B3-4104-01A-01D-1458-08 TCGA-B3-4104-10A-01D-1458-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 368382d0-ad7f-4735-b04a-e806d2a2d9a4 23886794-9d4c-4511-82ee-830db88796d5 . DSC2 NM_024422 exon10 c.C1420G p.P474A GTATTGGAGGGTT . 427.0 225.0 265.0 0.0 . 168 . . . none . . PASS Atlas-SNP C19orf21 126353 hgsc.bcm.edu hg19 19 757669 757669 + Silent SNP C C T novel TCGA-B3-4104-01A-01D-1458-08 TCGA-B3-4104-10A-01D-1458-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 368382d0-ad7f-4735-b04a-e806d2a2d9a4 23886794-9d4c-4511-82ee-830db88796d5 C19orf21,colon,carcinoma,+1,1 C19orf21 NM_173481 exon2 c.C723T p.N241N GGCCAACGGGCAC . 59.0 29.0 53.0 0.0 . 56 . . . none . . PASS Atlas-SNP PIK3R2 5296 hgsc.bcm.edu hg19 19 18279617 18279617 + Silent SNP G G A novel TCGA-B3-4104-01A-01D-1458-08 TCGA-B3-4104-10A-01D-1458-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 368382d0-ad7f-4735-b04a-e806d2a2d9a4 23886794-9d4c-4511-82ee-830db88796d5 . PIK3R2 NM_005027 exon15 c.G1890A p.T630T CCGCACGCAGGCA . 48.0 21.0 65.0 0.0 . 48 . . . none . . PASS Atlas-SNP PRR12 57479 hgsc.bcm.edu hg19 19 50099849 50099849 + Missense_Mutation SNP G G A novel TCGA-B3-4104-01A-01D-1458-08 TCGA-B3-4104-10A-01D-1458-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 368382d0-ad7f-4735-b04a-e806d2a2d9a4 23886794-9d4c-4511-82ee-830db88796d5 PRR12_ENST00000418929,NS,carcinoma,0,1 PRR12 NM_020719 exon4 c.G2257A p.A753T GCAGGCGCCAAGG . 18.0 6.0 42.0 0.0 . 157 . . . none . . PASS Atlas-SNP CPXM1 56265 hgsc.bcm.edu hg19 20 2775058 2775058 + Missense_Mutation SNP C C A novel TCGA-B3-4104-01A-01D-1458-08 TCGA-B3-4104-10A-01D-1458-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 368382d0-ad7f-4735-b04a-e806d2a2d9a4 23886794-9d4c-4511-82ee-830db88796d5 . CPXM1 NM_019609 exon14 c.G1983T p.W661C CAGACGCCAATAA . 106.0 24.0 128.0 0.0 . 107 . . . none . . PASS Atlas-SNP CTCFL 140690 hgsc.bcm.edu hg19 20 56090811 56090811 + Missense_Mutation SNP C C G novel TCGA-B3-4104-01A-01D-1458-08 TCGA-B3-4104-10A-01D-1458-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 368382d0-ad7f-4735-b04a-e806d2a2d9a4 23886794-9d4c-4511-82ee-830db88796d5 . CTCFL NM_001269044 exon5 c.G1139C p.R380T GTATCTCTGCTGG . 573.0 253.0 338.0 0.0 . 97 . . . none . . PASS Atlas-SNP ZBTB46 140685 hgsc.bcm.edu hg19 20 62407208 62407208 + Silent SNP G G A novel TCGA-B3-4104-01A-01D-1458-08 TCGA-B3-4104-10A-01D-1458-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 368382d0-ad7f-4735-b04a-e806d2a2d9a4 23886794-9d4c-4511-82ee-830db88796d5 . ZBTB46 NM_025224 exon3 c.C1045T p.L349L GGCCCAGATAGCT . 208.0 99.0 176.0 0.0 . 72 . . . none . . PASS Atlas-SNP PICK1 9463 hgsc.bcm.edu hg19 22 38470965 38470965 + Missense_Mutation SNP C C G novel TCGA-B3-4104-01A-01D-1458-08 TCGA-B3-4104-10A-01D-1458-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 368382d0-ad7f-4735-b04a-e806d2a2d9a4 23886794-9d4c-4511-82ee-830db88796d5 . PICK1 NM_012407 exon13 c.C1074G p.F358L CGTCTTCCCCATC . 66.0 25.0 83.0 0.0 . 30 . . . none . . PASS Atlas-SNP MKL1 57591 hgsc.bcm.edu hg19 22 40814967 40814967 + Missense_Mutation SNP G G A rs199908950 TCGA-B3-4104-01A-01D-1458-08 TCGA-B3-4104-10A-01D-1458-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 368382d0-ad7f-4735-b04a-e806d2a2d9a4 23886794-9d4c-4511-82ee-830db88796d5 . MKL1 NM_020831 exon12 c.C1475T p.S492L AGTGGCGAGGCCT . 68.0 11.0 77.0 0.0 . 69 . . . weak G|0.999;A|0.001 0.001 PASS Atlas-SNP PARVB 29780 hgsc.bcm.edu hg19 22 44564537 44564537 + Silent SNP C C T novel TCGA-B3-4104-01A-01D-1458-08 TCGA-B3-4104-10A-01D-1458-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 368382d0-ad7f-4735-b04a-e806d2a2d9a4 23886794-9d4c-4511-82ee-830db88796d5 . PARVB NM_001003828 exon14 c.C1173T p.T391T GTTCACCAAGTAC . 117.0 13.0 103.0 0.0 . 44 . . . none . . PASS Atlas-SNP CELSR1 9620 hgsc.bcm.edu hg19 22 46930992 46930992 + Silent SNP G G A novel TCGA-B3-4104-01A-01D-1458-08 TCGA-B3-4104-10A-01D-1458-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 368382d0-ad7f-4735-b04a-e806d2a2d9a4 23886794-9d4c-4511-82ee-830db88796d5 . CELSR1 NM_014246 exon1 c.C2076T p.Y692Y AAGCTCGTAGGTG . 48.0 13.0 52.0 0.0 . 242 . . . none . . PASS Atlas-SNP STAG2 10735 hgsc.bcm.edu hg19 X 123176469 123176469 + Nonsense_Mutation SNP C C T novel TCGA-B3-4104-01A-01D-1458-08 TCGA-B3-4104-10A-01D-1458-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 368382d0-ad7f-4735-b04a-e806d2a2d9a4 23886794-9d4c-4511-82ee-830db88796d5 . STAG2 NM_001042749 exon7 c.C436T p.R146X ATAATTCGAAAAA . 98.0 85.0 63.0 0.0 . 309 . . . none . . PASS Atlas-SNP IL9R 3581 hgsc.bcm.edu hg19 X 155232601 155232601 + Missense_Mutation SNP G G A rs372322566 TCGA-B3-4104-01A-01D-1458-08 TCGA-B3-4104-10A-01D-1458-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 368382d0-ad7f-4735-b04a-e806d2a2d9a4 23886794-9d4c-4511-82ee-830db88796d5 . IL9R NM_176786 exon3 c.G200A p.R67Q TGAGGCGAGACAT . 236.0 84.0 282.0 1.0 . 73 . . . weak . . PASS Atlas-SNP ND1 10625 hgsc.bcm.edu hg19 MT 3413 3413 + Missense_Mutation SNP G G A novel TCGA-B3-4104-01A-01D-1458-08 TCGA-B3-4104-10A-01D-1458-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 368382d0-ad7f-4735-b04a-e806d2a2d9a4 23886794-9d4c-4511-82ee-830db88796d5 . . ENST00000361390 exon1 c.G107A p.G36D GCAAAGGCCCCAA . 29.0 17.0 167.0 0.0 . . . . . none . . PASS Atlas-SNP ND5 0 hgsc.bcm.edu hg19 MT 12957 12957 + Silent SNP T T C novel TCGA-B3-4104-01A-01D-1458-08 TCGA-B3-4104-10A-01D-1458-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 368382d0-ad7f-4735-b04a-e806d2a2d9a4 23886794-9d4c-4511-82ee-830db88796d5 . . ENST00000361567 exon1 c.T621C p.N207N CGCTAATCCAAGC . 52.0 37.0 162.0 0.0 . . . . . none . . PASS Atlas-SNP CORO1B 57175 hgsc.bcm.edu hg19 11 67207603 67207603 + Frame_Shift_Del DEL C C - novel TCGA-B3-4104-01A-01D-1458-08 TCGA-B3-4104-10A-01D-1458-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 368382d0-ad7f-4735-b04a-e806d2a2d9a4 23886794-9d4c-4511-82ee-830db88796d5 . CORO1B NM_020441 exon8 c.994delT p.C332fs . . 139.0 65.0 172.0 0.0 . 30 . 0.467626 0 none . . PASS Atlas-INDEL SMPD2 6610 hgsc.bcm.edu hg19 6 109763791 109763791 + Frame_Shift_Del DEL C C - novel TCGA-B3-4104-01A-01D-1458-08 TCGA-B3-4104-10A-01D-1458-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 368382d0-ad7f-4735-b04a-e806d2a2d9a4 23886794-9d4c-4511-82ee-830db88796d5 . SMPD2 NM_003080 exon6 c.453delT p.H151fs . . 259.0 117.0 205.0 0.0 . 25 . 0.451737 0 none . . PASS Atlas-INDEL