Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq TVarRat NVarRat dbSNP_Strength dbSNP_AF dbSNP_PopFreq Confidence Algorithm ATP13A2 23400 hgsc.bcm.edu hg19 1 17318334 17318334 + Missense_Mutation SNP G G T novel TCGA-B1-A655-01A-11D-A31Z-10 TCGA-B1-A655-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10597e71-58d4-4013-97c4-efe9f0d395ea 4f069099-30a3-4559-b812-caa5ee9002f9 . ATP13A2 NM_022089 exon20 c.C2146A p.L716M GGCTCAGGTCTCC . 64.0 18.0 91.0 0.0 . 85 . . . none . . PASS Atlas-SNP RAP1GAP 5909 hgsc.bcm.edu hg19 1 21936724 21936724 + Silent SNP G G C novel TCGA-B1-A655-01A-11D-A31Z-10 TCGA-B1-A655-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10597e71-58d4-4013-97c4-efe9f0d395ea 4f069099-30a3-4559-b812-caa5ee9002f9 . RAP1GAP NM_001145658 exon14 c.C1080G p.V360V CTGGAAGACCACA . 191.0 52.0 156.0 0.0 . 119 . . . none . . PASS Atlas-SNP RPS8 6202 hgsc.bcm.edu hg19 1 45242407 45242407 + Missense_Mutation SNP C C G novel TCGA-B1-A655-01A-11D-A31Z-10 TCGA-B1-A655-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10597e71-58d4-4013-97c4-efe9f0d395ea 4f069099-30a3-4559-b812-caa5ee9002f9 . RPS8 NM_001012 exon3 c.C172G p.L58V CGTGCCCTGAGGT . 30.0 13.0 38.0 0.0 . 19 . . . none . . PASS Atlas-SNP AMPD1 270 hgsc.bcm.edu hg19 1 115221050 115221050 + Silent SNP A A G novel TCGA-B1-A655-01A-11D-A31Z-10 TCGA-B1-A655-10A-01D-A31X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10597e71-58d4-4013-97c4-efe9f0d395ea 4f069099-30a3-4559-b812-caa5ee9002f9 . AMPD1 NM_000036 exon8 c.T1095C p.Y365Y GGTGCTATAGACC . 86.0 30.0 76.0 0.0 . 223 . . . none . . PASS Atlas-SNP MYT1L 23040 hgsc.bcm.edu hg19 2 1805513 1805513 + Silent SNP T T C novel TCGA-B1-A655-01A-11D-A31Z-10 TCGA-B1-A655-10A-01D-A31X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10597e71-58d4-4013-97c4-efe9f0d395ea 4f069099-30a3-4559-b812-caa5ee9002f9 . MYT1L NM_015025 exon23 c.A3225G p.E1075E ATTGGATTCATTT . 76.0 22.0 69.0 0.0 . 241 . . . none . . PASS Atlas-SNP SMC6 79677 hgsc.bcm.edu hg19 2 17896324 17896324 + Missense_Mutation SNP T T A novel TCGA-B1-A655-01A-11D-A31Z-10 TCGA-B1-A655-10A-01D-A31X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10597e71-58d4-4013-97c4-efe9f0d395ea 4f069099-30a3-4559-b812-caa5ee9002f9 . SMC6 NM_001142286 exon16 c.A1534T p.I512F GATGAATGCAAGC . 66.0 28.0 70.0 0.0 . 102 . . . none . . PASS Atlas-SNP RHOB 388 hgsc.bcm.edu hg19 2 20647312 20647312 + Missense_Mutation SNP A A G novel TCGA-B1-A655-01A-11D-A31Z-10 TCGA-B1-A655-10A-01D-A31X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10597e71-58d4-4013-97c4-efe9f0d395ea 4f069099-30a3-4559-b812-caa5ee9002f9 . RHOB NM_004040 exon1 c.A86G p.E29G AGGACGAGTTCCC . 85.0 26.0 66.0 0.0 . 18 . . . none . . PASS Atlas-SNP SLC5A6 8884 hgsc.bcm.edu hg19 2 27427730 27427730 + Silent SNP G G C rs376306193 TCGA-B1-A655-01A-11D-A31Z-10 TCGA-B1-A655-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10597e71-58d4-4013-97c4-efe9f0d395ea 4f069099-30a3-4559-b812-caa5ee9002f9 SLC5A6,NS,carcinoma,0,1 SLC5A6 NM_021095 exon8 c.C804G p.L268L TAAGGAGAGCATC . 30.0 10.0 24.0 0.0 . 63 . . . weak . . PASS Atlas-SNP INO80B 83444 hgsc.bcm.edu hg19 2 74684908 74684908 + Missense_Mutation SNP T T A novel TCGA-B1-A655-01A-11D-A31Z-10 TCGA-B1-A655-10A-01D-A31X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10597e71-58d4-4013-97c4-efe9f0d395ea 4f069099-30a3-4559-b812-caa5ee9002f9 . INO80B NM_031288 exon5 c.T988A p.C330S GCACTCTGTAGTC . 25.0 8.0 21.0 0.0 . 37 . . . none . . PASS Atlas-SNP RPIA 22934 hgsc.bcm.edu hg19 2 89037541 89037541 + Missense_Mutation SNP T T G novel TCGA-B1-A655-01A-11D-A31Z-10 TCGA-B1-A655-10A-01D-A31X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10597e71-58d4-4013-97c4-efe9f0d395ea 4f069099-30a3-4559-b812-caa5ee9002f9 . RPIA NM_144563 exon8 c.T786G p.F262L GAAGTTTGACCGG . 114.0 9.0 92.0 0.0 . 35 . . . none . . PASS Atlas-SNP FER1L5 90342 hgsc.bcm.edu hg19 2 97368368 97368368 + Missense_Mutation SNP A A C novel TCGA-B1-A655-01A-11D-A31Z-10 TCGA-B1-A655-10A-01D-A31X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10597e71-58d4-4013-97c4-efe9f0d395ea 4f069099-30a3-4559-b812-caa5ee9002f9 . FER1L5 NM_001113382 exon47 c.A5395C p.K1799Q ATGCAGAAGACAG . 64.0 24.0 56.0 0.0 . 113 . . . none . . PASS Atlas-SNP XIRP2 129446 hgsc.bcm.edu hg19 2 168108259 168108259 + Missense_Mutation SNP C C T novel TCGA-B1-A655-01A-11D-A31Z-10 TCGA-B1-A655-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10597e71-58d4-4013-97c4-efe9f0d395ea 4f069099-30a3-4559-b812-caa5ee9002f9 . XIRP2 NM_152381 exon9 c.C10357T p.H3453Y TTCAAGCATGCCC . 148.0 59.0 158.0 0.0 . 914 . . . none . . PASS Atlas-SNP TTN 7273 hgsc.bcm.edu hg19 2 179577514 179577514 + Missense_Mutation SNP C C T novel TCGA-B1-A655-01A-11D-A31Z-10 TCGA-B1-A655-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10597e71-58d4-4013-97c4-efe9f0d395ea 4f069099-30a3-4559-b812-caa5ee9002f9 . TTN NM_001267550 exon94 c.G27238A p.D9080N CTACATCGAACAA . 74.0 20.0 56.0 0.0 . 18412 . . . none . . PASS Atlas-SNP FASTKD2 22868 hgsc.bcm.edu hg19 2 207655323 207655323 + Silent SNP T T C novel TCGA-B1-A655-01A-11D-A31Z-10 TCGA-B1-A655-10A-01D-A31X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10597e71-58d4-4013-97c4-efe9f0d395ea 4f069099-30a3-4559-b812-caa5ee9002f9 . FASTKD2 NM_001136193 exon11 c.T1926C p.S642S CAGATCTGCTTAT . 43.0 14.0 64.0 0.0 . 49 . . . none . . PASS Atlas-SNP LRRFIP1 9208 hgsc.bcm.edu hg19 2 238666100 238666100 + Missense_Mutation SNP A A T novel TCGA-B1-A655-01A-11D-A31Z-10 TCGA-B1-A655-10A-01D-A31X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10597e71-58d4-4013-97c4-efe9f0d395ea 4f069099-30a3-4559-b812-caa5ee9002f9 . LRRFIP1 NM_001137550 exon17 c.A1133T p.E378V CTCAGGAAATCCG . 221.0 66.0 270.0 0.0 . 171 . . . none . . PASS Atlas-SNP ZKSCAN7 55888 hgsc.bcm.edu hg19 3 44612087 44612087 + Silent SNP T T C novel TCGA-B1-A655-01A-11D-A31Z-10 TCGA-B1-A655-10A-01D-A31X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10597e71-58d4-4013-97c4-efe9f0d395ea 4f069099-30a3-4559-b812-caa5ee9002f9 . . NM_018651 exon6 c.T1485C p.Y495Y ACCTTATGAATGC . 91.0 9.0 88.0 0.0 . . . . . none . . PASS Atlas-SNP VPRBP 9730 hgsc.bcm.edu hg19 3 51452313 51452313 + Splice_Site SNP T T G novel TCGA-B1-A655-01A-11D-A31Z-10 TCGA-B1-A655-10A-01D-A31X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10597e71-58d4-4013-97c4-efe9f0d395ea 4f069099-30a3-4559-b812-caa5ee9002f9 . VPRBP NM_001171904 exon18 c.3442-2A>C . TAAATCTTTAGAG . 70.0 6.0 82.0 0.0 . 107 . . . none . . PASS Atlas-SNP MME 4311 hgsc.bcm.edu hg19 3 154858036 154858036 + Silent SNP A A G novel TCGA-B1-A655-01A-11D-A31Z-10 TCGA-B1-A655-10A-01D-A31X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10597e71-58d4-4013-97c4-efe9f0d395ea 4f069099-30a3-4559-b812-caa5ee9002f9 . MME NM_007287 exon10 c.A912G p.T304T GATGACATTGGCC . 324.0 109.0 293.0 0.0 . 133 . . . none . . PASS Atlas-SNP AFAP1 60312 hgsc.bcm.edu hg19 4 7811366 7811366 + Silent SNP T T C novel TCGA-B1-A655-01A-11D-A31Z-10 TCGA-B1-A655-10A-01D-A31X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10597e71-58d4-4013-97c4-efe9f0d395ea 4f069099-30a3-4559-b812-caa5ee9002f9 . AFAP1 NM_001134647 exon9 c.A1029G p.S343S CTCAGCTGAGGAG . 55.0 18.0 50.0 0.0 . 93 . . . none . . PASS Atlas-SNP GUF1 60558 hgsc.bcm.edu hg19 4 44688034 44688034 + Missense_Mutation SNP T T C novel TCGA-B1-A655-01A-11D-A31Z-10 TCGA-B1-A655-10A-01D-A31X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10597e71-58d4-4013-97c4-efe9f0d395ea 4f069099-30a3-4559-b812-caa5ee9002f9 .,1 GUF1 NM_021927 exon7 c.T728C p.I243T AAAGAATCCCCCC . 42.0 11.0 40.0 0.0 . 72 . . . none . . PASS Atlas-SNP PRDM8 56978 hgsc.bcm.edu hg19 4 81123265 81123265 + Missense_Mutation SNP C C G novel TCGA-B1-A655-01A-11D-A31Z-10 TCGA-B1-A655-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10597e71-58d4-4013-97c4-efe9f0d395ea 4f069099-30a3-4559-b812-caa5ee9002f9 . PRDM8 NM_001099403 exon4 c.C649G p.Q217E CAGCAGCAGGAGG . 100.0 4.0 80.0 0.0 . 44 . . . none . . PASS Atlas-SNP PKD2 5311 hgsc.bcm.edu hg19 4 88996109 88996109 + Missense_Mutation SNP G G C novel TCGA-B1-A655-01A-11D-A31Z-10 TCGA-B1-A655-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10597e71-58d4-4013-97c4-efe9f0d395ea 4f069099-30a3-4559-b812-caa5ee9002f9 . PKD2 NM_000297 exon14 c.G2668C p.E890Q GTGGCCGAGGTCA . 87.0 18.0 113.0 0.0 . 82 . . . none . . PASS Atlas-SNP DNAH5 1767 hgsc.bcm.edu hg19 5 13839483 13839483 + Missense_Mutation SNP A A C novel TCGA-B1-A655-01A-11D-A31Z-10 TCGA-B1-A655-10A-01D-A31X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10597e71-58d4-4013-97c4-efe9f0d395ea 4f069099-30a3-4559-b812-caa5ee9002f9 . DNAH5 NM_001369 exon35 c.T5864G p.I1955R GGAGTTATTACAA . 55.0 19.0 60.0 0.0 . 868 . . . none . . PASS Atlas-SNP AMACR 23600 hgsc.bcm.edu hg19 5 33998825 33998825 + Missense_Mutation SNP A A G novel TCGA-B1-A655-01A-11D-A31Z-10 TCGA-B1-A655-10A-01D-A31X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10597e71-58d4-4013-97c4-efe9f0d395ea 4f069099-30a3-4559-b812-caa5ee9002f9 . AMACR NM_203382 exon3 c.T499C p.Y167H AGTCGTATAGAAA . 106.0 34.0 135.0 0.0 . 38 . . . none . . PASS Atlas-SNP ADAMTS6 11174 hgsc.bcm.edu hg19 5 64766709 64766709 + Missense_Mutation SNP C C T novel TCGA-B1-A655-01A-11D-A31Z-10 TCGA-B1-A655-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10597e71-58d4-4013-97c4-efe9f0d395ea 4f069099-30a3-4559-b812-caa5ee9002f9 . ADAMTS6 NM_197941 exon3 c.G358A p.G120R GGGGTCCATCTTT . 84.0 22.0 77.0 0.0 . 174 . . . none . . PASS Atlas-SNP PCDHGA5 56110 hgsc.bcm.edu hg19 5 140745640 140745640 + Silent SNP C C T novel TCGA-B1-A655-01A-11D-A31Z-10 TCGA-B1-A655-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10597e71-58d4-4013-97c4-efe9f0d395ea 4f069099-30a3-4559-b812-caa5ee9002f9 . PCDHGA5 NM_032054 exon1 c.C1743T p.S581S TCGCTCCGCAGAA . 104.0 35.0 96.0 0.0 . 215 . . . none . . PASS Atlas-SNP UBTD2 92181 hgsc.bcm.edu hg19 5 171661228 171661228 + Missense_Mutation SNP C C T novel TCGA-B1-A655-01A-11D-A31Z-10 TCGA-B1-A655-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10597e71-58d4-4013-97c4-efe9f0d395ea 4f069099-30a3-4559-b812-caa5ee9002f9 UBTD2,colon,carcinoma,0,1 UBTD2 NM_152277 exon2 c.G205A p.E69K AAATCTCTTTCCG . 93.0 32.0 100.0 0.0 . 26 . . . none . . PASS Atlas-SNP RGS14 10636 hgsc.bcm.edu hg19 5 176798989 176798989 + Silent SNP C C T novel TCGA-B1-A655-01A-11D-A31Z-10 TCGA-B1-A655-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10597e71-58d4-4013-97c4-efe9f0d395ea 4f069099-30a3-4559-b812-caa5ee9002f9 . RGS14 NM_006480 exon15 c.C1614T p.P538P AGGGCCCAGCTCC . 44.0 18.0 60.0 0.0 . 34 . . . none . . PASS Atlas-SNP HIST1H2BJ 8970 hgsc.bcm.edu hg19 6 27100264 27100264 + Missense_Mutation SNP G G A novel TCGA-B1-A655-01A-11D-A31Z-10 TCGA-B1-A655-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10597e71-58d4-4013-97c4-efe9f0d395ea 4f069099-30a3-4559-b812-caa5ee9002f9 . HIST1H2BJ NM_021058 exon1 c.C266T p.T89I GTGATGGTCGAGC . 33.0 12.0 62.0 0.0 . 21 . . . none . . PASS Atlas-SNP KCNK16 83795 hgsc.bcm.edu hg19 6 39285639 39285639 + Missense_Mutation SNP G G T novel TCGA-B1-A655-01A-11D-A31Z-10 TCGA-B1-A655-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10597e71-58d4-4013-97c4-efe9f0d395ea 4f069099-30a3-4559-b812-caa5ee9002f9 . KCNK16 NM_001135106 exon3 c.C418A p.L140I GGTTGAGGAAGAT . 60.0 7.0 67.0 0.0 . 59 . . . none . . PASS Atlas-SNP PRSS35 167681 hgsc.bcm.edu hg19 6 84233613 84233613 + Silent SNP C C T novel TCGA-B1-A655-01A-11D-A31Z-10 TCGA-B1-A655-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10597e71-58d4-4013-97c4-efe9f0d395ea 4f069099-30a3-4559-b812-caa5ee9002f9 . PRSS35 NM_153362 exon2 c.C453T p.S151S GCTTTCCACGGGC . 115.0 40.0 129.0 0.0 . 60 . . . none . . PASS Atlas-SNP ENPP3 5169 hgsc.bcm.edu hg19 6 132059234 132059234 + Missense_Mutation SNP A A C novel TCGA-B1-A655-01A-11D-A31Z-10 TCGA-B1-A655-10A-01D-A31X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10597e71-58d4-4013-97c4-efe9f0d395ea 4f069099-30a3-4559-b812-caa5ee9002f9 . ENPP3 NM_005021 exon23 c.A2231C p.N744T GAGTAAATGTGGT . 78.0 29.0 91.0 0.0 . 117 . . . none . . PASS Atlas-SNP SNX9 51429 hgsc.bcm.edu hg19 6 158358486 158358486 + Missense_Mutation SNP C C A novel TCGA-B1-A655-01A-11D-A31Z-10 TCGA-B1-A655-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10597e71-58d4-4013-97c4-efe9f0d395ea 4f069099-30a3-4559-b812-caa5ee9002f9 SNX9,head_neck,malignant_melanoma,0,1 SNX9 NM_016224 exon15 c.C1464A p.F488L CCATTTCCTGATG . 80.0 20.0 79.0 0.0 . 43 . . . none . . PASS Atlas-SNP GCK 2645 hgsc.bcm.edu hg19 7 44185276 44185276 + Missense_Mutation SNP C C G novel TCGA-B1-A655-01A-11D-A31Z-10 TCGA-B1-A655-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10597e71-58d4-4013-97c4-efe9f0d395ea 4f069099-30a3-4559-b812-caa5ee9002f9 . GCK NM_033507 exon9 c.G1076C p.R359P GAGGGTCGCAGCC . 70.0 27.0 60.0 0.0 . 125 . . . none . . PASS Atlas-SNP POM121C 100101267 hgsc.bcm.edu hg19 7 75070316 75070316 + Missense_Mutation SNP A A C novel TCGA-B1-A655-01A-11D-A31Z-10 TCGA-B1-A655-10A-01D-A31X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10597e71-58d4-4013-97c4-efe9f0d395ea 4f069099-30a3-4559-b812-caa5ee9002f9 . POM121C NM_001099415 exon5 c.T143G p.L48R GCACTCAGTACAG . 138.0 33.0 146.0 0.0 . 46 . . . none . . PASS Atlas-SNP LHFPL3 375612 hgsc.bcm.edu hg19 7 103969251 103969251 + Silent SNP C C T novel TCGA-B1-A655-01A-11D-A31Z-10 TCGA-B1-A655-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10597e71-58d4-4013-97c4-efe9f0d395ea 4f069099-30a3-4559-b812-caa5ee9002f9 LHFPL3,NS,carcinoma,0,1 LHFPL3 NM_199000 exon1 c.C24T p.A8A CGCTGCCGCCGCC . 37.0 2.0 29.0 1.0 . 24 . . . none . . PASS Atlas-SNP MYOM2 9172 hgsc.bcm.edu hg19 8 2020508 2020508 + Missense_Mutation SNP G G C novel TCGA-B1-A655-01A-11D-A31Z-10 TCGA-B1-A655-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10597e71-58d4-4013-97c4-efe9f0d395ea 4f069099-30a3-4559-b812-caa5ee9002f9 MYOM2,NS,malignant_melanoma,0,2 MYOM2 NM_003970 exon9 c.G877C p.E293Q GAAGGCGAGACGG . 29.0 9.0 37.0 0.0 . 251 . . . none . . PASS Atlas-SNP LOXL2 4017 hgsc.bcm.edu hg19 8 23198538 23198538 + Missense_Mutation SNP G G A novel TCGA-B1-A655-01A-11D-A31Z-10 TCGA-B1-A655-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10597e71-58d4-4013-97c4-efe9f0d395ea 4f069099-30a3-4559-b812-caa5ee9002f9 . LOXL2 NM_002318 exon4 c.C710T p.P237L TCCCCAGGGAAGC . 45.0 15.0 45.0 0.0 . 97 . . . none . . PASS Atlas-SNP EXOSC4 54512 hgsc.bcm.edu hg19 8 145134932 145134932 + Silent SNP C C T novel TCGA-B1-A655-01A-11D-A31Z-10 TCGA-B1-A655-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10597e71-58d4-4013-97c4-efe9f0d395ea 4f069099-30a3-4559-b812-caa5ee9002f9 EXOSC4,right_upper_lobe,carcinoma,0,1 EXOSC4 NM_019037 exon2 c.C258T p.R86R TGAGCGCAAGCGA . 118.0 40.0 86.0 0.0 . 19 . . . none . . PASS Atlas-SNP SLC39A4 55630 hgsc.bcm.edu hg19 8 145640398 145640398 + Missense_Mutation SNP G G T rs200044971 by1000genomes;alternate_allele TCGA-B1-A655-01A-11D-A31Z-10 TCGA-B1-A655-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10597e71-58d4-4013-97c4-efe9f0d395ea 4f069099-30a3-4559-b812-caa5ee9002f9 . SLC39A4 NM_130849 exon4 c.C764A p.P255H ATGAGGGGCACAG . 38.0 15.0 32.0 0.0 . 54 . . . alt G|0.998;A|0.002 . PASS Atlas-SNP CCDC171 203238 hgsc.bcm.edu hg19 9 15729747 15729747 + Missense_Mutation SNP T T C novel TCGA-B1-A655-01A-11D-A31Z-10 TCGA-B1-A655-10A-01D-A31X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10597e71-58d4-4013-97c4-efe9f0d395ea 4f069099-30a3-4559-b812-caa5ee9002f9 . . NM_173550 exon16 c.T2000C p.L667P AGGAACTAGAGCT . 120.0 35.0 101.0 0.0 . . . . . none . . PASS Atlas-SNP NPR2 4882 hgsc.bcm.edu hg19 9 35792786 35792786 + Silent SNP T T C novel TCGA-B1-A655-01A-11D-A31Z-10 TCGA-B1-A655-10A-01D-A31X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10597e71-58d4-4013-97c4-efe9f0d395ea 4f069099-30a3-4559-b812-caa5ee9002f9 . NPR2 NM_003995 exon1 c.T381C p.S127S GGCCTCTGGTTTT . 70.0 14.0 67.0 0.0 . 162 . . . none . . PASS Atlas-SNP OR1N2 138882 hgsc.bcm.edu hg19 9 125315955 125315955 + Silent SNP C C T novel TCGA-B1-A655-01A-11D-A31Z-10 TCGA-B1-A655-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10597e71-58d4-4013-97c4-efe9f0d395ea 4f069099-30a3-4559-b812-caa5ee9002f9 . OR1N2 NM_001004457 exon1 c.C507T p.T169T GCTAACCAACTGT . 48.0 19.0 44.0 0.0 . 51 . . . none . . PASS Atlas-SNP MED27 9442 hgsc.bcm.edu hg19 9 134889753 134889753 + Silent SNP A A G novel TCGA-B1-A655-01A-11D-A31Z-10 TCGA-B1-A655-10A-01D-A31X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10597e71-58d4-4013-97c4-efe9f0d395ea 4f069099-30a3-4559-b812-caa5ee9002f9 . MED27 NM_001253881 exon3 c.T450C p.A150A GGGCTGAGCCTTT . 80.0 12.0 134.0 0.0 . 37 . . . none . . PASS Atlas-SNP GJD4 219770 hgsc.bcm.edu hg19 10 35896876 35896876 + Silent SNP C C A novel TCGA-B1-A655-01A-11D-A31Z-10 TCGA-B1-A655-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10597e71-58d4-4013-97c4-efe9f0d395ea 4f069099-30a3-4559-b812-caa5ee9002f9 . GJD4 NM_153368 exon2 c.C435A p.I145I CATCATCCACCTC . 23.0 8.0 19.0 0.0 . 38 . . . none . . PASS Atlas-SNP ADAMTS14 140766 hgsc.bcm.edu hg19 10 72513573 72513573 + Missense_Mutation SNP G G T novel TCGA-B1-A655-01A-11D-A31Z-10 TCGA-B1-A655-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10597e71-58d4-4013-97c4-efe9f0d395ea 4f069099-30a3-4559-b812-caa5ee9002f9 . ADAMTS14 NM_139155 exon19 c.G2756T p.W919L AGGAGTGGGGTGC . 39.0 8.0 43.0 0.0 . 148 . . . none . . PASS Atlas-SNP C10orf11 83938 hgsc.bcm.edu hg19 10 77818509 77818509 + Missense_Mutation SNP A A G novel TCGA-B1-A655-01A-11D-A31Z-10 TCGA-B1-A655-10A-01D-A31X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10597e71-58d4-4013-97c4-efe9f0d395ea 4f069099-30a3-4559-b812-caa5ee9002f9 . C10orf11 NM_032024 exon4 c.A400G p.R134G TTGGTCAGAGGAG . 89.0 13.0 105.0 0.0 . 19 . . . none . . PASS Atlas-SNP C10orf12 26148 hgsc.bcm.edu hg19 10 98744160 98744160 + Missense_Mutation SNP A A C novel TCGA-B1-A655-01A-11D-A31Z-10 TCGA-B1-A655-10A-01D-A31X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10597e71-58d4-4013-97c4-efe9f0d395ea 4f069099-30a3-4559-b812-caa5ee9002f9 . C10orf12 NM_015652 exon1 c.A3013C p.N1005H TATTCCAATATTC . 60.0 21.0 49.0 0.0 . 94 . . . none . . PASS Atlas-SNP ERLIN1 10613 hgsc.bcm.edu hg19 10 101935785 101935785 + Missense_Mutation SNP G G C novel TCGA-B1-A655-01A-11D-A31Z-10 TCGA-B1-A655-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10597e71-58d4-4013-97c4-efe9f0d395ea 4f069099-30a3-4559-b812-caa5ee9002f9 . . NM_006459 exon5 c.C347G p.T116S ATTAAGGTCTTGT . 97.0 35.0 95.0 0.0 . . . . . none . . PASS Atlas-SNP TTC40 54777 hgsc.bcm.edu hg19 10 134733640 134733640 + Silent SNP C C T novel TCGA-B1-A655-01A-11D-A31Z-10 TCGA-B1-A655-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10597e71-58d4-4013-97c4-efe9f0d395ea 4f069099-30a3-4559-b812-caa5ee9002f9 . TTC40 NM_001200049 exon14 c.G1653A p.K551K CCACGCCTTCGCA . 54.0 18.0 43.0 0.0 . 100 . . . none . . PASS Atlas-SNP HIPK3 10114 hgsc.bcm.edu hg19 11 33374883 33374883 + Silent SNP T T C novel TCGA-B1-A655-01A-11D-A31Z-10 TCGA-B1-A655-10A-01D-A31X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10597e71-58d4-4013-97c4-efe9f0d395ea 4f069099-30a3-4559-b812-caa5ee9002f9 . HIPK3 NM_005734 exon17 c.T3417C p.S1139S AGCCTCTCCGTGT . 112.0 31.0 125.0 0.0 . 92 . . . none . . PASS Atlas-SNP ATG13 9776 hgsc.bcm.edu hg19 11 46666907 46666907 + Nonsense_Mutation SNP C C T novel TCGA-B1-A655-01A-11D-A31Z-10 TCGA-B1-A655-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10597e71-58d4-4013-97c4-efe9f0d395ea 4f069099-30a3-4559-b812-caa5ee9002f9 . ATG13 NM_001142673 exon4 c.C88T p.Q30X ATTGTCCAGGCTC . 91.0 5.0 78.0 0.0 . 60 . . . none . . PASS Atlas-SNP PCNXL3 399909 hgsc.bcm.edu hg19 11 65397996 65397996 + Missense_Mutation SNP A A C novel TCGA-B1-A655-01A-11D-A31Z-10 TCGA-B1-A655-10A-01D-A31X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10597e71-58d4-4013-97c4-efe9f0d395ea 4f069099-30a3-4559-b812-caa5ee9002f9 . PCNXL3 NM_032223 exon27 c.A4391C p.Y1464S AGGGCTATAGCAT . 122.0 41.0 135.0 0.0 . 140 . . . none . . PASS Atlas-SNP MRE11A 4361 hgsc.bcm.edu hg19 11 94225958 94225958 + Missense_Mutation SNP C C A novel TCGA-B1-A655-01A-11D-A31Z-10 TCGA-B1-A655-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10597e71-58d4-4013-97c4-efe9f0d395ea 4f069099-30a3-4559-b812-caa5ee9002f9 . MRE11A NM_005591 exon2 c.G10T p.A4S CATCTGCAGTACT . 72.0 7.0 57.0 0.0 . 145 . . . none . . PASS Atlas-SNP ASB8 140461 hgsc.bcm.edu hg19 12 48543736 48543736 + Missense_Mutation SNP C C T novel TCGA-B1-A655-01A-11D-A31Z-10 TCGA-B1-A655-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10597e71-58d4-4013-97c4-efe9f0d395ea 4f069099-30a3-4559-b812-caa5ee9002f9 . ASB8 NM_024095 exon4 c.G280A p.A94T TCTCTGCTGCATA . 83.0 26.0 59.0 0.0 . 25 . . . none . . PASS Atlas-SNP SERPINA12 145264 hgsc.bcm.edu hg19 14 94964196 94964196 + Missense_Mutation SNP A A C novel TCGA-B1-A655-01A-11D-A31Z-10 TCGA-B1-A655-10A-01D-A31X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10597e71-58d4-4013-97c4-efe9f0d395ea 4f069099-30a3-4559-b812-caa5ee9002f9 . SERPINA12 NM_173850 exon3 c.T539G p.F180C CTGATAAAGTCAT . 82.0 39.0 130.0 0.0 . 93 . . . none . . PASS Atlas-SNP RASGRP1 10125 hgsc.bcm.edu hg19 15 38798102 38798102 + Missense_Mutation SNP T T C novel TCGA-B1-A655-01A-11D-A31Z-10 TCGA-B1-A655-10A-01D-A31X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10597e71-58d4-4013-97c4-efe9f0d395ea 4f069099-30a3-4559-b812-caa5ee9002f9 . RASGRP1 NM_001128602 exon10 c.A1262G p.Y421C TCAGTGTAGTAAA . 68.0 25.0 68.0 0.0 . 50 . . . none . . PASS Atlas-SNP DISP2 85455 hgsc.bcm.edu hg19 15 40660678 40660678 + Missense_Mutation SNP C C G rs375551948 alternate_allele TCGA-B1-A655-01A-11D-A31Z-10 TCGA-B1-A655-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10597e71-58d4-4013-97c4-efe9f0d395ea 4f069099-30a3-4559-b812-caa5ee9002f9 . DISP2 NM_033510 exon8 c.C2365G p.P789A CTGGACCCTCGTA . 66.0 19.0 59.0 0.0 . 86 . . . alt . . PASS Atlas-SNP MGA 23269 hgsc.bcm.edu hg19 15 42005518 42005518 + Missense_Mutation SNP G G C novel TCGA-B1-A655-01A-11D-A31Z-10 TCGA-B1-A655-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10597e71-58d4-4013-97c4-efe9f0d395ea 4f069099-30a3-4559-b812-caa5ee9002f9 . MGA NM_001080541 exon9 c.G3254C p.R1085T TGAAAAGAAAAGT . 80.0 24.0 106.0 0.0 . 264 . . . none . . PASS Atlas-SNP ALPK3 57538 hgsc.bcm.edu hg19 15 85400827 85400827 + Missense_Mutation SNP A A T novel TCGA-B1-A655-01A-11D-A31Z-10 TCGA-B1-A655-10A-01D-A31X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10597e71-58d4-4013-97c4-efe9f0d395ea 4f069099-30a3-4559-b812-caa5ee9002f9 . ALPK3 NM_020778 exon6 c.A3464T p.D1155V GCTGTGACCCTGG . 62.0 19.0 64.0 0.0 . 289 . . . none . . PASS Atlas-SNP CACNA1H 8912 hgsc.bcm.edu hg19 16 1268594 1268594 + Missense_Mutation SNP C C A novel TCGA-B1-A655-01A-11D-A31Z-10 TCGA-B1-A655-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10597e71-58d4-4013-97c4-efe9f0d395ea 4f069099-30a3-4559-b812-caa5ee9002f9 . CACNA1H NM_021098 exon33 c.C5830A p.H1944N GCGCCCCACCCCC . 91.0 28.0 87.0 0.0 . 317 . . . none . . PASS Atlas-SNP CLEC19A 728276 hgsc.bcm.edu hg19 16 19320374 19320374 + Missense_Mutation SNP T T C novel TCGA-B1-A655-01A-11D-A31Z-10 TCGA-B1-A655-10A-01D-A31X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10597e71-58d4-4013-97c4-efe9f0d395ea 4f069099-30a3-4559-b812-caa5ee9002f9 . CLEC19A NM_001256720 exon5 c.T530C p.V177A CCTTTGTCTGCAA . 51.0 6.0 55.0 0.0 . 4 . . . none . . PASS Atlas-SNP ZKSCAN2 342357 hgsc.bcm.edu hg19 16 25266603 25266603 + Missense_Mutation SNP C C G novel TCGA-B1-A655-01A-11D-A31Z-10 TCGA-B1-A655-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10597e71-58d4-4013-97c4-efe9f0d395ea 4f069099-30a3-4559-b812-caa5ee9002f9 . ZKSCAN2 NM_001012981 exon2 c.G510C p.E170D AGGTTCCTCCCGA . 46.0 12.0 43.0 0.0 . 90 . . . none . . PASS Atlas-SNP CCDC79 283847 hgsc.bcm.edu hg19 16 66804098 66804098 + Missense_Mutation SNP C C T novel TCGA-B1-A655-01A-11D-A31Z-10 TCGA-B1-A655-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10597e71-58d4-4013-97c4-efe9f0d395ea 4f069099-30a3-4559-b812-caa5ee9002f9 . CCDC79 NM_001136505 exon14 c.G1387A p.D463N CCTCATCTTCTGC . 107.0 40.0 100.0 0.0 . 32 . . . none . . PASS Atlas-SNP TP53 7157 hgsc.bcm.edu hg19 17 7578271 7578271 + Missense_Mutation SNP T T G novel TCGA-B1-A655-01A-11D-A31Z-10 TCGA-B1-A655-10A-01D-A31X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10597e71-58d4-4013-97c4-efe9f0d395ea 4f069099-30a3-4559-b812-caa5ee9002f9 TP53_ENST00000545858,NS,carcinoma,0,1 TP53 NM_000546 exon6 c.A578C p.H193P ATAAGATGCTGAG . 123.0 29.0 120.0 1.0 . 33396 . . . none . . PASS Atlas-SNP BRCA1 672 hgsc.bcm.edu hg19 17 41203099 41203099 + Silent SNP G G A novel TCGA-B1-A655-01A-11D-A31Z-10 TCGA-B1-A655-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10597e71-58d4-4013-97c4-efe9f0d395ea 4f069099-30a3-4559-b812-caa5ee9002f9 . BRCA1 NM_007300 exon21 c.C5376T p.P1792P GGTGAAGGGCCCA . 63.0 24.0 53.0 0.0 . 304 . . . none . . PASS Atlas-SNP HEATR6 63897 hgsc.bcm.edu hg19 17 58121036 58121036 + Missense_Mutation SNP G G T novel TCGA-B1-A655-01A-11D-A31Z-10 TCGA-B1-A655-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10597e71-58d4-4013-97c4-efe9f0d395ea 4f069099-30a3-4559-b812-caa5ee9002f9 . HEATR6 NM_022070 exon20 c.C3434A p.P1145Q CCAGTTGGTGCCT . 207.0 49.0 130.0 0.0 . 98 . . . none . . PASS Atlas-SNP HELZ 9931 hgsc.bcm.edu hg19 17 65162707 65162707 + Silent SNP T T C novel TCGA-B1-A655-01A-11D-A31Z-10 TCGA-B1-A655-10A-01D-A31X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10597e71-58d4-4013-97c4-efe9f0d395ea 4f069099-30a3-4559-b812-caa5ee9002f9 . HELZ NM_014877 exon15 c.A1782G p.Q594Q ATTTAATTGAAAC . 117.0 9.0 85.0 0.0 . 160 . . . none . . PASS Atlas-SNP FSCN2 25794 hgsc.bcm.edu hg19 17 79496379 79496379 + Silent SNP G G A novel TCGA-B1-A655-01A-11D-A31Z-10 TCGA-B1-A655-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10597e71-58d4-4013-97c4-efe9f0d395ea 4f069099-30a3-4559-b812-caa5ee9002f9 . FSCN2 NM_001077182 exon1 c.G822A p.R274R TGTGCGGCAAGGT . 123.0 73.0 83.0 0.0 . 35 . . . none . . PASS Atlas-SNP PCYT2 5833 hgsc.bcm.edu hg19 17 79865647 79865647 + Splice_Site SNP A A G novel TCGA-B1-A655-01A-11D-A31Z-10 TCGA-B1-A655-10A-01D-A31X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10597e71-58d4-4013-97c4-efe9f0d395ea 4f069099-30a3-4559-b812-caa5ee9002f9 . PCYT2 NM_001256435 exon6 c.258+2T>C . CGACTCACCTGGC . 52.0 14.0 46.0 0.0 . 23 . . . none . . PASS Atlas-SNP KCNG2 26251 hgsc.bcm.edu hg19 18 77659162 77659162 + Silent SNP G G A rs140841838 TCGA-B1-A655-01A-11D-A31Z-10 TCGA-B1-A655-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10597e71-58d4-4013-97c4-efe9f0d395ea 4f069099-30a3-4559-b812-caa5ee9002f9 . KCNG2 NM_012283 exon2 c.G747A p.A249A GCGCGCGCCACTC . 26.0 6.0 32.0 0.0 . 48 . . . weak G|1.000;A|0.000 0.000 PASS Atlas-SNP ICAM1 3383 hgsc.bcm.edu hg19 19 10395839 10395839 + Missense_Mutation SNP T T A novel TCGA-B1-A655-01A-11D-A31Z-10 TCGA-B1-A655-10A-01D-A31X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10597e71-58d4-4013-97c4-efe9f0d395ea 4f069099-30a3-4559-b812-caa5ee9002f9 . ICAM1 NM_000201 exon7 c.T1475A p.I492K CAGTCATAATGGG . 83.0 29.0 67.0 0.0 . 32 . . . none . . PASS Atlas-SNP PLEKHG2 64857 hgsc.bcm.edu hg19 19 39913652 39913652 + Missense_Mutation SNP G G A novel TCGA-B1-A655-01A-11D-A31Z-10 TCGA-B1-A655-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10597e71-58d4-4013-97c4-efe9f0d395ea 4f069099-30a3-4559-b812-caa5ee9002f9 . PLEKHG2 NM_022835 exon18 c.G1958A p.G653D CCGAAGGTTCTCG . 87.0 5.0 80.0 0.0 . 329 . . . none . . PASS Atlas-SNP TRPM4 54795 hgsc.bcm.edu hg19 19 49674876 49674876 + Silent SNP C C T novel TCGA-B1-A655-01A-11D-A31Z-10 TCGA-B1-A655-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10597e71-58d4-4013-97c4-efe9f0d395ea 4f069099-30a3-4559-b812-caa5ee9002f9 TRPM4,NS,carcinoma,0,1 TRPM4 NM_001195227 exon8 c.C900T p.L300L TCTCCTCGTGGCT . 72.0 23.0 66.0 0.0 . 119 . . . none . . PASS Atlas-SNP ZNF175 7728 hgsc.bcm.edu hg19 19 52091298 52091298 + Missense_Mutation SNP T T C novel TCGA-B1-A655-01A-11D-A31Z-10 TCGA-B1-A655-10A-01D-A31X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10597e71-58d4-4013-97c4-efe9f0d395ea 4f069099-30a3-4559-b812-caa5ee9002f9 . ZNF175 NM_007147 exon5 c.T1714C p.S572P TCTAAGTCTCAAT . 68.0 20.0 63.0 0.0 . 65 . . . none . . PASS Atlas-SNP BRWD1 54014 hgsc.bcm.edu hg19 21 40665927 40665927 + Nonsense_Mutation SNP G G T novel TCGA-B1-A655-01A-11D-A31Z-10 TCGA-B1-A655-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10597e71-58d4-4013-97c4-efe9f0d395ea 4f069099-30a3-4559-b812-caa5ee9002f9 . BRWD1 NM_018963 exon8 c.C641A p.S214X TGTGTTGACCAAA . 90.0 32.0 104.0 0.0 . 325 . . . none . . PASS Atlas-SNP RFPL3 10738 hgsc.bcm.edu hg19 22 32754194 32754194 + Missense_Mutation SNP T T A novel TCGA-B1-A655-01A-11D-A31Z-10 TCGA-B1-A655-10A-01D-A31X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10597e71-58d4-4013-97c4-efe9f0d395ea 4f069099-30a3-4559-b812-caa5ee9002f9 . RFPL3 NM_001098535 exon1 c.T136A p.Y46N TCAGACTATCTGG . 149.0 40.0 134.0 0.0 . 91 . . . none . . PASS Atlas-SNP RFPL3 10738 hgsc.bcm.edu hg19 22 32754195 32754195 + Missense_Mutation SNP A A T novel TCGA-B1-A655-01A-11D-A31Z-10 TCGA-B1-A655-10A-01D-A31X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10597e71-58d4-4013-97c4-efe9f0d395ea 4f069099-30a3-4559-b812-caa5ee9002f9 . RFPL3 NM_001098535 exon1 c.A137T p.Y46F CAGACTATCTGGA . 150.0 40.0 134.0 0.0 . 91 . . . none . . PASS Atlas-SNP ERCC6L 54821 hgsc.bcm.edu hg19 X 71427693 71427693 + Silent SNP G G T novel TCGA-B1-A655-01A-11D-A31Z-10 TCGA-B1-A655-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10597e71-58d4-4013-97c4-efe9f0d395ea 4f069099-30a3-4559-b812-caa5ee9002f9 . ERCC6L NM_017669 exon2 c.C924A p.A308A TCCCAAGGCTTTT . 149.0 6.0 222.0 0.0 . 98 . . . none . . PASS Atlas-SNP TCEAL4 79921 hgsc.bcm.edu hg19 X 102841991 102841991 + Missense_Mutation SNP A A G novel TCGA-B1-A655-01A-11D-A31Z-10 TCGA-B1-A655-10A-01D-A31X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10597e71-58d4-4013-97c4-efe9f0d395ea 4f069099-30a3-4559-b812-caa5ee9002f9 . TCEAL4 NM_001006935 exon3 c.A388G p.T130A AGAAAAACTAATA . 166.0 74.0 259.0 0.0 . 18 . . . none . . PASS Atlas-SNP H2BFM 286436 hgsc.bcm.edu hg19 X 103294650 103294650 + Missense_Mutation SNP A A T novel TCGA-B1-A655-01A-11D-A31Z-10 TCGA-B1-A655-10A-01D-A31X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10597e71-58d4-4013-97c4-efe9f0d395ea 4f069099-30a3-4559-b812-caa5ee9002f9 . H2BFM NM_001164416 exon1 c.A107T p.Q36L AGAAGCAGAAGAG . 92.0 44.0 131.0 0.0 . 25 . . . none . . PASS Atlas-SNP ND5 0 hgsc.bcm.edu hg19 MT 14015 14015 + Nonsense_Mutation SNP A A G novel TCGA-B1-A655-01A-11D-A31Z-10 TCGA-B1-A655-10A-01D-A31X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10597e71-58d4-4013-97c4-efe9f0d395ea 4f069099-30a3-4559-b812-caa5ee9002f9 . . ENST00000361567 exon1 c.A1679G p.K560X TAGAAAAGCTATT . 144.0 6.0 11.0 0.0 . . . . . none . . PASS Atlas-SNP STARD3 10948 hgsc.bcm.edu hg19 17 37814678 37814685 + Frame_Shift_Del DEL TGGCTACC TGGCTACC - novel TCGA-B1-A655-01A-11D-A31Z-10 TCGA-B1-A655-10A-01D-A31X-10 TGGCTACC TGGCTACC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10597e71-58d4-4013-97c4-efe9f0d395ea 4f069099-30a3-4559-b812-caa5ee9002f9 . STARD3 NM_006804 exon6 c.449_456del p.150_152del . . 50.0 14.0 46.0 0.0 . 33 . 0.28 0 none . . PASS Atlas-Indel,Pindel ZNF826P 664701 hgsc.bcm.edu hg19 19 20578766 20578768 + RNA DEL TGA TGA - novel TCGA-B1-A655-01A-11D-A31Z-10 TCGA-B1-A655-10A-01D-A31X-10 TGA TGA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10597e71-58d4-4013-97c4-efe9f0d395ea 4f069099-30a3-4559-b812-caa5ee9002f9 . ZNF826P . . . . . . 78.0 15.0 77.0 0.0 . 5 . 0.192308 0 none . . PASS Atlas-Indel,Pindel SLC25A12 8604 hgsc.bcm.edu hg19 2 172700922 172700937 + Frame_Shift_Del DEL CGGTTATGCCCAAAAT CGGTTATGCCCAAAAT - novel TCGA-B1-A655-01A-11D-A31Z-10 TCGA-B1-A655-10A-01D-A31X-10 CGGTTATGCCCAAAAT CGGTTATGCCCAAAAT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10597e71-58d4-4013-97c4-efe9f0d395ea 4f069099-30a3-4559-b812-caa5ee9002f9 . SLC25A12 NM_003705 exon5 c.408_423del p.136_141del . . 101.0 13.0 109.0 0.0 . 59 . 0.128713 0 none . . PASS Atlas-Indel,Pindel CEP152 22995 hgsc.bcm.edu hg19 15 49074426 49074426 + Frame_Shift_Del DEL C C - novel TCGA-B1-A655-01A-11D-A31Z-10 TCGA-B1-A655-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10597e71-58d4-4013-97c4-efe9f0d395ea 4f069099-30a3-4559-b812-caa5ee9002f9 . CEP152 NM_014985 exon11 c.1324delT p.S442fs . . 30.0 10.0 27.0 0.0 . 145 . 0.333333 0 none . . PASS Atlas-INDEL NFATC2 4773 hgsc.bcm.edu hg19 20 50051812 50051813 + Frame_Shift_Del DEL GC GC - novel TCGA-B1-A655-01A-11D-A31Z-10 TCGA-B1-A655-10A-01D-A31X-10 GC GC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10597e71-58d4-4013-97c4-efe9f0d395ea 4f069099-30a3-4559-b812-caa5ee9002f9 . NFATC2 NM_012340 exon8 c.1945_1946del p.649_649del . . 84.0 25.0 69.0 0.0 . 112 . 0.297619 0 none . . PASS Atlas-Indel,Pindel CACNA1A 773 hgsc.bcm.edu hg19 19 13418985 13418985 + Frame_Shift_Del DEL A A - novel TCGA-B1-A655-01A-11D-A31Z-10 TCGA-B1-A655-10A-01D-A31X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10597e71-58d4-4013-97c4-efe9f0d395ea 4f069099-30a3-4559-b812-caa5ee9002f9 . CACNA1A NM_001127221 exon14 c.1866delC p.F622fs . . 126.0 42.0 137.0 0.0 . 715 . 0.333333 0 none . . PASS Atlas-Indel,Pindel GALNT6 11226 hgsc.bcm.edu hg19 12 51758036 51758036 + Frame_Shift_Del DEL A A - novel TCGA-B1-A655-01A-11D-A31Z-10 TCGA-B1-A655-10A-01D-A31X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10597e71-58d4-4013-97c4-efe9f0d395ea 4f069099-30a3-4559-b812-caa5ee9002f9 . GALNT6 NM_007210 exon6 c.919delG p.E307fs . . 110.0 35.0 98.0 0.0 . 63 . 0.318182 0 none . . PASS Atlas-Indel,Pindel RGS6 9628 hgsc.bcm.edu hg19 14 72939649 72939649 + Frame_Shift_Del DEL C C - novel TCGA-B1-A655-01A-11D-A31Z-10 TCGA-B1-A655-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10597e71-58d4-4013-97c4-efe9f0d395ea 4f069099-30a3-4559-b812-caa5ee9002f9 . RGS6 NM_001204424 exon9 c.605delT p.V202fs . . 150.0 70.0 197.0 0.0 . 92 . 0.466667 0 none . . PASS Atlas-Indel,Pindel SMEK2 57223 hgsc.bcm.edu hg19 2 55806886 55806886 + Frame_Shift_Del DEL A A - novel TCGA-B1-A655-01A-11D-A31Z-10 TCGA-B1-A655-10A-01D-A31X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10597e71-58d4-4013-97c4-efe9f0d395ea 4f069099-30a3-4559-b812-caa5ee9002f9 . SMEK2 NM_001122964 exon9 c.1398delC p.F466fs . . 67.0 21.0 78.0 0.0 . 86 . 0.313433 0 none . . PASS Atlas-Indel,Pindel CSF3R 1441 hgsc.bcm.edu hg19 1 36939407 36939408 + In_Frame_Ins INS - - GTC novel TCGA-B1-A655-01A-11D-A31Z-10 TCGA-B1-A655-10A-01D-A31X-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10597e71-58d4-4013-97c4-efe9f0d395ea 4f069099-30a3-4559-b812-caa5ee9002f9 . CSF3R NM_156039 exon5 c.443_444insGAC p.P148delinsRP . . 76.0 25.0 79.0 0.0 . 157 . 0.328947 0 none . . PASS Atlas-Indel,Pindel SCIN 85477 hgsc.bcm.edu hg19 7 12680013 12680013 + Frame_Shift_Del DEL T T - novel TCGA-B1-A655-01A-11D-A31Z-10 TCGA-B1-A655-10A-01D-A31X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10597e71-58d4-4013-97c4-efe9f0d395ea 4f069099-30a3-4559-b812-caa5ee9002f9 . SCIN NM_001112706 exon11 c.1451delG p.S484fs . . 51.0 17.0 59.0 0.0 . 105 . 0.333333 0 none . . PASS Atlas-Indel,Pindel CYP4X1 260293 hgsc.bcm.edu hg19 1 47489659 47489659 + Frame_Shift_Del DEL A A - novel TCGA-B1-A655-01A-11D-A31Z-10 TCGA-B1-A655-10A-01D-A31X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10597e71-58d4-4013-97c4-efe9f0d395ea 4f069099-30a3-4559-b812-caa5ee9002f9 . CYP4X1 NM_178033 exon1 c.169delC p.H57fs . . 79.0 25.0 77.0 0.0 . 58 . 0.316456 0 none . . PASS Atlas-Indel,Pindel ARHGAP5 394 hgsc.bcm.edu hg19 14 32560648 32560648 + Frame_Shift_Del DEL A A - novel TCGA-B1-A655-01A-11D-A31Z-10 TCGA-B1-A655-10A-01D-A31X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10597e71-58d4-4013-97c4-efe9f0d395ea 4f069099-30a3-4559-b812-caa5ee9002f9 . ARHGAP5 NM_001030055 exon2 c.772delT p.Y258fs . . 167.0 85.0 279.0 0.0 . 166 . 0.508982 0 none . . PASS Atlas-Indel,Pindel NPR2 4882 hgsc.bcm.edu hg19 9 35800822 35800822 + Frame_Shift_Del DEL C C - novel TCGA-B1-A655-01A-11D-A31Z-10 TCGA-B1-A655-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10597e71-58d4-4013-97c4-efe9f0d395ea 4f069099-30a3-4559-b812-caa5ee9002f9 . NPR2 NM_003995 exon6 c.1334delA p.D445fs . . 82.0 21.0 60.0 0.0 . 162 . 0.256098 0 none . . PASS Atlas-Indel,Pindel