Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
TMEM201	199953	hgsc.bcm.edu	hg19	1	9656944	9656944	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-7332-01A-11D-2136-08	TCGA-B1-7332-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d453dcec-6bab-4b59-a593-ee38835cbe15	9d012012-57fb-4523-a066-ad674ddb3d3f	TMEM201_ENST00000340381,NS,carcinoma,0,2	TMEM201	NM_001010866	exon3	c.G262A	p.A88T	ATCCCCGCCCAGT	.	58.0	19.0	102.0	0.0	.	63	.	.	.	none	.	.	PASS	Atlas-SNP
ZBTB40	9923	hgsc.bcm.edu	hg19	1	22850847	22850847	+	Silent	SNP	C	C	A	novel		TCGA-B1-7332-01A-11D-2136-08	TCGA-B1-7332-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d453dcec-6bab-4b59-a593-ee38835cbe15	9d012012-57fb-4523-a066-ad674ddb3d3f	.	ZBTB40	NM_001083621	exon18	c.C3435A	p.T1145T	CTTCACCTCCCAG	.	35.0	8.0	91.0	0.0	.	87	.	.	.	none	.	.	PASS	Atlas-SNP
DLGAP3	58512	hgsc.bcm.edu	hg19	1	35365842	35365842	+	Silent	SNP	G	G	A	rs149715442		TCGA-B1-7332-01A-11D-2136-08	TCGA-B1-7332-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d453dcec-6bab-4b59-a593-ee38835cbe15	9d012012-57fb-4523-a066-ad674ddb3d3f	DLGAP3,right_upper_lobe,carcinoma,0,2	DLGAP3	NM_001080418	exon2	c.C1140T	p.T380T	GCCACCGGTGGGG	.	113.0	43.0	234.0	0.0	.	107	.	.	.	weak	G|1.000;A|0.000	0.000	PASS	Atlas-SNP
ROR1	4919	hgsc.bcm.edu	hg19	1	64603076	64603076	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B1-7332-01A-11D-2136-08	TCGA-B1-7332-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d453dcec-6bab-4b59-a593-ee38835cbe15	9d012012-57fb-4523-a066-ad674ddb3d3f	.	ROR1	NM_001083592	exon5	c.C507A	p.F169L	TGGATTCTGTCAG	.	108.0	44.0	163.0	0.0	.	113	.	.	.	none	.	.	PASS	Atlas-SNP
ATP1B1	481	hgsc.bcm.edu	hg19	1	169096573	169096573	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B1-7332-01A-11D-2136-08	TCGA-B1-7332-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d453dcec-6bab-4b59-a593-ee38835cbe15	9d012012-57fb-4523-a066-ad674ddb3d3f	.	ATP1B1	NM_001677	exon4	c.A494T	p.E165V	ATGATGAAACTTA	.	60.0	25.0	110.0	0.0	.	29	.	.	.	none	.	.	PASS	Atlas-SNP
NMNAT2	23057	hgsc.bcm.edu	hg19	1	183253891	183253891	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B1-7332-01A-11D-2136-08	TCGA-B1-7332-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d453dcec-6bab-4b59-a593-ee38835cbe15	9d012012-57fb-4523-a066-ad674ddb3d3f	.	NMNAT2	NM_015039	exon6	c.C483G	p.S161R	GATCCGGCTGAGG	.	58.0	16.0	145.0	0.0	.	48	.	.	.	none	.	.	PASS	Atlas-SNP
USH2A	7399	hgsc.bcm.edu	hg19	1	215953196	215953196	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B1-7332-01A-11D-2136-08	TCGA-B1-7332-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d453dcec-6bab-4b59-a593-ee38835cbe15	9d012012-57fb-4523-a066-ad674ddb3d3f	.	USH2A	NM_206933	exon55	c.A10928G	p.H3643R	ACCGTATGCTGTC	.	54.0	25.0	76.0	0.0	.	1168	.	.	.	none	.	.	PASS	Atlas-SNP
IARS2	55699	hgsc.bcm.edu	hg19	1	220267643	220267643	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B1-7332-01A-11D-2136-08	TCGA-B1-7332-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d453dcec-6bab-4b59-a593-ee38835cbe15	9d012012-57fb-4523-a066-ad674ddb3d3f	.	IARS2	NM_018060	exon1	c.T85C	p.C29R	CTTCCCTGCAGCC	.	12.0	7.0	37.0	0.0	.	106	.	.	.	none	.	.	PASS	Atlas-SNP
LRP2	4036	hgsc.bcm.edu	hg19	2	170058174	170058174	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B1-7332-01A-11D-2136-08	TCGA-B1-7332-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d453dcec-6bab-4b59-a593-ee38835cbe15	9d012012-57fb-4523-a066-ad674ddb3d3f	.	LRP2	NM_004525	exon44	c.T8416C	p.C2806R	CATGGCAGTTGTC	.	104.0	19.0	73.0	0.0	.	751	.	.	.	none	.	.	PASS	Atlas-SNP
FZD7	8324	hgsc.bcm.edu	hg19	2	202900338	202900338	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-7332-01A-11D-2136-08	TCGA-B1-7332-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d453dcec-6bab-4b59-a593-ee38835cbe15	9d012012-57fb-4523-a066-ad674ddb3d3f	.	FZD7	NM_003507	exon1	c.G968A	p.G323D	ACGATGGCTACCG	.	120.0	23.0	110.0	0.0	.	70	.	.	.	none	.	.	PASS	Atlas-SNP
COL6A3	1293	hgsc.bcm.edu	hg19	2	238289848	238289848	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B1-7332-01A-11D-2136-08	TCGA-B1-7332-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d453dcec-6bab-4b59-a593-ee38835cbe15	9d012012-57fb-4523-a066-ad674ddb3d3f	.	COL6A3	NM_004369	exon5	c.T1607C	p.L536P	GTGAATAGGTTGT	.	191.0	30.0	203.0	0.0	.	608	.	.	.	none	.	.	PASS	Atlas-SNP
DAG1	1605	hgsc.bcm.edu	hg19	3	49568799	49568799	+	Silent	SNP	A	A	G	novel		TCGA-B1-7332-01A-11D-2136-08	TCGA-B1-7332-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d453dcec-6bab-4b59-a593-ee38835cbe15	9d012012-57fb-4523-a066-ad674ddb3d3f	.	DAG1	NM_001177642	exon4	c.A855G	p.A285A	GGGCGCAATGTCT	.	104.0	44.0	113.0	0.0	.	60	.	.	.	none	.	.	PASS	Atlas-SNP
C4orf51	646603	hgsc.bcm.edu	hg19	4	146653660	146653660	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B1-7332-01A-11D-2136-08	TCGA-B1-7332-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d453dcec-6bab-4b59-a593-ee38835cbe15	9d012012-57fb-4523-a066-ad674ddb3d3f	.	C4orf51	NM_001080531	exon6	c.C557T	p.A186V	CAGAAGCTGATCG	.	19.0	9.0	39.0	0.0	.	18	.	.	.	none	.	.	PASS	Atlas-SNP
POU4F2	5458	hgsc.bcm.edu	hg19	4	147561825	147561825	+	Silent	SNP	C	C	T	novel		TCGA-B1-7332-01A-11D-2136-08	TCGA-B1-7332-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d453dcec-6bab-4b59-a593-ee38835cbe15	9d012012-57fb-4523-a066-ad674ddb3d3f	.	POU4F2	NM_004575	exon2	c.C1095T	p.A365A	CTTTGCCATTCAG	.	89.0	30.0	181.0	0.0	.	83	.	.	.	none	.	.	PASS	Atlas-SNP
DROSHA	29102	hgsc.bcm.edu	hg19	5	31409241	31409241	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B1-7332-01A-11D-2136-08	TCGA-B1-7332-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d453dcec-6bab-4b59-a593-ee38835cbe15	9d012012-57fb-4523-a066-ad674ddb3d3f	.	DROSHA	NM_013235	exon32	c.A3776G	p.N1259S	GGGTCATTCCAAT	.	36.0	22.0	37.0	0.0	.	130	.	.	.	none	.	.	PASS	Atlas-SNP
POLR3G	10622	hgsc.bcm.edu	hg19	5	89797779	89797779	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B1-7332-01A-11D-2136-08	TCGA-B1-7332-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d453dcec-6bab-4b59-a593-ee38835cbe15	9d012012-57fb-4523-a066-ad674ddb3d3f	.	POLR3G	NM_006467	exon6	c.A412G	p.T138A	ACTAATACTGAAG	.	38.0	11.0	35.0	0.0	.	19	.	.	.	none	.	.	PASS	Atlas-SNP
ADTRP	84830	hgsc.bcm.edu	hg19	6	11735821	11735821	+	Silent	SNP	G	G	A	novel		TCGA-B1-7332-01A-11D-2136-08	TCGA-B1-7332-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d453dcec-6bab-4b59-a593-ee38835cbe15	9d012012-57fb-4523-a066-ad674ddb3d3f	.	ADTRP	NM_001143948	exon5	c.C540T	p.A180A	AATGCTGGCAGCA	.	41.0	8.0	57.0	0.0	.	3	.	.	.	none	.	.	PASS	Atlas-SNP
MET	4233	hgsc.bcm.edu	hg19	7	116422117	116422117	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B1-7332-01A-11D-2136-08	TCGA-B1-7332-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d453dcec-6bab-4b59-a593-ee38835cbe15	9d012012-57fb-4523-a066-ad674ddb3d3f	MET,NS,carcinoma,0,1	MET	NM_001127500	exon18	c.T3652A	p.F1218I	AAAAAGTTTGTCC	.	30.0	11.0	44.0	0.0	.	412	.	.	.	none	.	.	PASS	Atlas-SNP
DOCK5	80005	hgsc.bcm.edu	hg19	8	25226181	25226181	+	Silent	SNP	C	C	A	novel		TCGA-B1-7332-01A-11D-2136-08	TCGA-B1-7332-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d453dcec-6bab-4b59-a593-ee38835cbe15	9d012012-57fb-4523-a066-ad674ddb3d3f	.	DOCK5	NM_024940	exon33	c.C3378A	p.P1126P	AATCCCCATTTTC	.	40.0	16.0	55.0	0.0	.	167	.	.	.	none	.	.	PASS	Atlas-SNP
TRPS1	7227	hgsc.bcm.edu	hg19	8	116631588	116631588	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B1-7332-01A-11D-2136-08	TCGA-B1-7332-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d453dcec-6bab-4b59-a593-ee38835cbe15	9d012012-57fb-4523-a066-ad674ddb3d3f	.	TRPS1	NM_014112	exon3	c.G737A	p.G246D	TCGTTGCCGTAGT	.	117.0	38.0	122.0	0.0	.	516	.	.	.	none	.	.	PASS	Atlas-SNP
EPPK1	83481	hgsc.bcm.edu	hg19	8	144941596	144941596	+	Silent	SNP	G	G	A	novel		TCGA-B1-7332-01A-11D-2136-08	TCGA-B1-7332-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d453dcec-6bab-4b59-a593-ee38835cbe15	9d012012-57fb-4523-a066-ad674ddb3d3f	.	EPPK1	NM_031308	exon1	c.C5826T	p.D1942D	GCAGGGGTCCAGG	.	63.0	27.0	166.0	0.0	.	199	.	.	.	none	.	.	PASS	Atlas-SNP
SMU1	55234	hgsc.bcm.edu	hg19	9	33048146	33048146	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-B1-7332-01A-11D-2136-08	TCGA-B1-7332-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d453dcec-6bab-4b59-a593-ee38835cbe15	9d012012-57fb-4523-a066-ad674ddb3d3f	.	SMU1	NM_018225	exon11	c.C1401G	p.Y467X	GAAACAGTAGAGC	.	63.0	13.0	89.0	0.0	.	29	.	.	.	none	.	.	PASS	Atlas-SNP
SPATA31D1	389763	hgsc.bcm.edu	hg19	9	84607291	84607291	+	Missense_Mutation	SNP	T	T	G	rs201182137	bycluster	TCGA-B1-7332-01A-11D-2136-08	TCGA-B1-7332-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d453dcec-6bab-4b59-a593-ee38835cbe15	9d012012-57fb-4523-a066-ad674ddb3d3f	FAM75D4,NS,carcinoma,0,2	.	NM_001001670	exon4	c.T1906G	p.L636V	GAAAGTTTGTGGG	.	102.0	5.0	70.0	0.0	.	.	.	.	.	weak	.	.	PASS	Atlas-SNP
OR5C1	392391	hgsc.bcm.edu	hg19	9	125551413	125551413	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-7332-01A-11D-2136-08	TCGA-B1-7332-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d453dcec-6bab-4b59-a593-ee38835cbe15	9d012012-57fb-4523-a066-ad674ddb3d3f	.	OR5C1	NM_001001923	exon1	c.G202A	p.A68T	TTCCTGGCCAACC	.	175.0	8.0	237.0	0.0	.	45	.	.	.	none	.	.	PASS	Atlas-SNP
KIAA1279	26128	hgsc.bcm.edu	hg19	10	70749011	70749011	+	Silent	SNP	G	G	C	novel		TCGA-B1-7332-01A-11D-2136-08	TCGA-B1-7332-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d453dcec-6bab-4b59-a593-ee38835cbe15	9d012012-57fb-4523-a066-ad674ddb3d3f	.	KIAA1279	NM_015634	exon1	c.G423C	p.A141A	CCAGGCGCAGGTG	.	24.0	15.0	41.0	0.0	.	35	.	.	.	none	.	.	PASS	Atlas-SNP
KATNAL1	84056	hgsc.bcm.edu	hg19	13	30814673	30814673	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B1-7332-01A-11D-2136-08	TCGA-B1-7332-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d453dcec-6bab-4b59-a593-ee38835cbe15	9d012012-57fb-4523-a066-ad674ddb3d3f	.	KATNAL1	NM_001014380	exon6	c.A650G	p.K217R	AACTTCTTAGCTT	.	63.0	33.0	102.0	0.0	.	53	.	.	.	none	.	.	PASS	Atlas-SNP
HEXA	3073	hgsc.bcm.edu	hg19	15	72637848	72637848	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B1-7332-01A-11D-2136-08	TCGA-B1-7332-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d453dcec-6bab-4b59-a593-ee38835cbe15	9d012012-57fb-4523-a066-ad674ddb3d3f	.	HEXA	NM_000520	exon13	c.T1465A	p.L489M	ATGTCAACTTGTT	.	71.0	10.0	88.0	0.0	.	48	.	.	.	none	.	.	PASS	Atlas-SNP
METTL9	51108	hgsc.bcm.edu	hg19	16	21666647	21666647	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-7332-01A-11D-2136-08	TCGA-B1-7332-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d453dcec-6bab-4b59-a593-ee38835cbe15	9d012012-57fb-4523-a066-ad674ddb3d3f	.	METTL9	NM_016025	exon5	c.G851T	p.G284V	AAGCTGGTTTTGT	.	66.0	16.0	73.0	0.0	.	18	.	.	.	none	.	.	PASS	Atlas-SNP
FAM83G	644815	hgsc.bcm.edu	hg19	17	18881908	18881908	+	Silent	SNP	G	G	A	novel		TCGA-B1-7332-01A-11D-2136-08	TCGA-B1-7332-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d453dcec-6bab-4b59-a593-ee38835cbe15	9d012012-57fb-4523-a066-ad674ddb3d3f	.	FAM83G	NM_001039999	exon5	c.C1071T	p.V357V	CTCGTCGACGCTC	.	146.0	21.0	153.0	0.0	.	51	.	.	.	none	.	.	PASS	Atlas-SNP
KANSL1	284058	hgsc.bcm.edu	hg19	17	44109553	44109553	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B1-7332-01A-11D-2136-08	TCGA-B1-7332-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d453dcec-6bab-4b59-a593-ee38835cbe15	9d012012-57fb-4523-a066-ad674ddb3d3f	.	.	NM_001193466	exon14	c.T2950C	p.S984P	CATGGGAGTATTC	.	103.0	38.0	145.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF652	22834	hgsc.bcm.edu	hg19	17	47388762	47388762	+	Silent	SNP	A	A	G	novel		TCGA-B1-7332-01A-11D-2136-08	TCGA-B1-7332-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d453dcec-6bab-4b59-a593-ee38835cbe15	9d012012-57fb-4523-a066-ad674ddb3d3f	.	ZNF652	NM_001145365	exon5	c.T1221C	p.H407H	CCCAATATGAATG	.	248.0	33.0	245.0	0.0	.	54	.	.	.	none	.	.	PASS	Atlas-SNP
SMCHD1	23347	hgsc.bcm.edu	hg19	18	2772342	2772342	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B1-7332-01A-11D-2136-08	TCGA-B1-7332-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d453dcec-6bab-4b59-a593-ee38835cbe15	9d012012-57fb-4523-a066-ad674ddb3d3f	.	SMCHD1	NM_015295	exon41	c.C5147T	p.T1716I	ACTATACTAAAGG	.	46.0	19.0	98.0	0.0	.	88	.	.	.	none	.	.	PASS	Atlas-SNP
WIZ	58525	hgsc.bcm.edu	hg19	19	15558957	15558957	+	Silent	SNP	C	C	T	novel		TCGA-B1-7332-01A-11D-2136-08	TCGA-B1-7332-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d453dcec-6bab-4b59-a593-ee38835cbe15	9d012012-57fb-4523-a066-ad674ddb3d3f	.	WIZ	NM_021241	exon2	c.G162A	p.K54K	GCCCTCCTTGGTG	.	76.0	30.0	223.0	0.0	.	152	.	.	.	none	.	.	PASS	Atlas-SNP
PLVAP	83483	hgsc.bcm.edu	hg19	19	17476947	17476947	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B1-7332-01A-11D-2136-08	TCGA-B1-7332-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d453dcec-6bab-4b59-a593-ee38835cbe15	9d012012-57fb-4523-a066-ad674ddb3d3f	.	PLVAP	NM_031310	exon2	c.T427G	p.C143G	CTCTGCATTGCTT	.	138.0	52.0	293.0	1.0	.	64	.	.	.	none	.	.	PASS	Atlas-SNP
PRX	57716	hgsc.bcm.edu	hg19	19	40903295	40903295	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B1-7332-01A-11D-2136-08	TCGA-B1-7332-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d453dcec-6bab-4b59-a593-ee38835cbe15	9d012012-57fb-4523-a066-ad674ddb3d3f	.	PRX	NM_181882	exon7	c.G964A	p.V322M	GCACCACTACCGA	.	33.0	9.0	49.0	0.0	.	151	.	.	.	none	.	.	PASS	Atlas-SNP
APOL5	80831	hgsc.bcm.edu	hg19	22	36123235	36123235	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B1-7332-01A-11D-2136-08	TCGA-B1-7332-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d453dcec-6bab-4b59-a593-ee38835cbe15	9d012012-57fb-4523-a066-ad674ddb3d3f	.	APOL5	NM_030642	exon3	c.C1120T	p.P374S	GTTAAACCAGAAG	.	40.0	16.0	105.0	0.0	.	45	.	.	.	none	.	.	PASS	Atlas-SNP
DDX3X	1654	hgsc.bcm.edu	hg19	X	41203029	41203029	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-7332-01A-11D-2136-08	TCGA-B1-7332-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d453dcec-6bab-4b59-a593-ee38835cbe15	9d012012-57fb-4523-a066-ad674ddb3d3f	.	DDX3X	NM_001193416	exon8	c.G719T	p.S240I	TCTTGAGTCAGAT	.	89.0	10.0	154.0	0.0	.	138	.	.	.	none	.	.	PASS	Atlas-SNP
ATP11C	286410	hgsc.bcm.edu	hg19	X	138844142	138844142	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B1-7332-01A-11D-2136-08	TCGA-B1-7332-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d453dcec-6bab-4b59-a593-ee38835cbe15	9d012012-57fb-4523-a066-ad674ddb3d3f	.	ATP11C	NM_001010986	exon22	c.T2627C	p.L876P	TGTACAAGGTGTG	.	152.0	69.0	75.0	0.0	.	319	.	.	.	none	.	.	PASS	Atlas-SNP
SLC25A12	8604	hgsc.bcm.edu	hg19	2	172691265	172691266	+	Frame_Shift_Del	DEL	GC	GC	-	novel		TCGA-B1-7332-01A-11D-2136-08	TCGA-B1-7332-10A-01D-2136-08	GC	GC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d453dcec-6bab-4b59-a593-ee38835cbe15	9d012012-57fb-4523-a066-ad674ddb3d3f	.	SLC25A12	NM_003705	exon7	c.723_724del	p.241_242del	.	.	134.0	16.0	87.0	0.0	.	59	.	0.119403	0	none	.	.	PASS	Atlas-Indel,Pindel
ZDHHC3	51304	hgsc.bcm.edu	hg19	3	44986685	44986687	+	In_Frame_Del	DEL	TGA	TGA	-	novel		TCGA-B1-7332-01A-11D-2136-08	TCGA-B1-7332-10A-01D-2136-08	TGA	TGA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d453dcec-6bab-4b59-a593-ee38835cbe15	9d012012-57fb-4523-a066-ad674ddb3d3f	.	ZDHHC3	NM_001135179	exon3	c.405_407del	p.135_136del	.	.	154.0	28.0	133.0	0.0	.	25	.	0.181818	0	none	.	.	PASS	Atlas-Indel,Pindel
UGT1A9	54600	hgsc.bcm.edu	hg19	2	234580593	234580593	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B1-7332-01A-11D-2136-08	TCGA-B1-7332-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d453dcec-6bab-4b59-a593-ee38835cbe15	9d012012-57fb-4523-a066-ad674ddb3d3f	.	UGT1A9	NM_021027	exon1	c.12delA	p.T4fs	.	.	71.0	18.0	67.0	0.0	.	79	.	0.253521	0	none	.	.	PASS	Atlas-Indel,Pindel
DHX15	1665	hgsc.bcm.edu	hg19	4	24543620	24543620	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B1-7332-01A-11D-2136-08	TCGA-B1-7332-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d453dcec-6bab-4b59-a593-ee38835cbe15	9d012012-57fb-4523-a066-ad674ddb3d3f	.	DHX15	NM_001358	exon8	c.1362delG	p.E454fs	.	.	56.0	17.0	53.0	0.0	.	69	.	0.303571	0	none	.	.	PASS	Atlas-Indel,Pindel
DIEXF	27042	hgsc.bcm.edu	hg19	1	210006621	210006621	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B1-7332-01A-11D-2136-08	TCGA-B1-7332-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d453dcec-6bab-4b59-a593-ee38835cbe15	9d012012-57fb-4523-a066-ad674ddb3d3f	.	DIEXF	NM_014388	exon4	c.479delC	p.A160fs	.	.	81.0	31.0	104.0	0.0	.	97	.	0.382716	0	none	.	.	PASS	Atlas-Indel,Pindel
ATAD2	29028	hgsc.bcm.edu	hg19	8	124382171	124382185	+	In_Frame_Del	DEL	TCATCATCATCATCG	TCATCATCATCATCG	-	novel		TCGA-B1-7332-01A-11D-2136-08	TCGA-B1-7332-10A-01D-2136-08	TCATCATCATCATCG	TCATCATCATCATCG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d453dcec-6bab-4b59-a593-ee38835cbe15	9d012012-57fb-4523-a066-ad674ddb3d3f	.	ATAD2	NM_014109	exon7	c.808_822del	p.270_274del	.	.	45.0	12.0	48.0	0.0	.	160	.	0.267	.	none	.	.	PASS	Pindel
HNRNPCL1	343069	hgsc.bcm.edu	hg19	1	12907282	12907285	+	Frame_Shift_Del	DEL	GGTG	GGTG	-	novel		TCGA-B1-7332-01A-11D-2136-08	TCGA-B1-7332-10A-01D-2136-08	GGTG	GGTG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d453dcec-6bab-4b59-a593-ee38835cbe15	9d012012-57fb-4523-a066-ad674ddb3d3f	.	HNRNPCL1	NM_001013631	exon2	c.859_862del	p.287_288del	.	.	233.0	16.0	380.0	0.0	.	68	.	0.069	.	none	.	.	PASS	Pindel