Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq TVarRat NVarRat dbSNP_Strength dbSNP_AF dbSNP_PopFreq Confidence Algorithm RERE 473 hgsc.bcm.edu hg19 1 8415616 8415616 + Silent SNP G G T novel TCGA-AL-7173-01A-11D-2136-08 TCGA-AL-7173-10A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2fd86890-1842-4e9e-9100-f10814f8db6a d279d1dd-cfd3-4527-8aaf-d880d7862c30 . RERE NM_012102 exon23 c.C4530A p.P1510P TGACATGGGGGGT . 36.0 9.0 39.0 0.0 . 129 . . . none . . PASS Atlas-SNP TSPAN2 10100 hgsc.bcm.edu hg19 1 115601516 115601516 + Silent SNP G G A novel TCGA-AL-7173-01A-11D-2136-08 TCGA-AL-7173-10A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2fd86890-1842-4e9e-9100-f10814f8db6a d279d1dd-cfd3-4527-8aaf-d880d7862c30 . TSPAN2 NM_005725 exon5 c.C432T p.T144T GTGGAAGGTGATG . 167.0 40.0 203.0 0.0 . 37 . . . none . . PASS Atlas-SNP RGL1 23179 hgsc.bcm.edu hg19 1 183885638 183885638 + Missense_Mutation SNP G G C novel TCGA-AL-7173-01A-11D-2136-08 TCGA-AL-7173-10A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2fd86890-1842-4e9e-9100-f10814f8db6a d279d1dd-cfd3-4527-8aaf-d880d7862c30 RGL1,NS,carcinoma,0,1 RGL1 NM_015149 exon17 c.G1912C p.G638R TCCTCAGGGATGT . 169.0 47.0 153.0 0.0 . 91 . . . none . . PASS Atlas-SNP TRAPPC12 51112 hgsc.bcm.edu hg19 2 3483103 3483103 + Silent SNP G G A novel TCGA-AL-7173-01A-11D-2136-08 TCGA-AL-7173-10A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2fd86890-1842-4e9e-9100-f10814f8db6a d279d1dd-cfd3-4527-8aaf-d880d7862c30 . . NM_016030 exon12 c.G2079A p.V693V GAGCGTGCTCTTC . 124.0 30.0 160.0 0.0 . . . . . none . . PASS Atlas-SNP RHOQ 23433 hgsc.bcm.edu hg19 2 46803262 46803262 + Missense_Mutation SNP A A G novel TCGA-AL-7173-01A-11D-2136-08 TCGA-AL-7173-10A-01D-2136-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2fd86890-1842-4e9e-9100-f10814f8db6a d279d1dd-cfd3-4527-8aaf-d880d7862c30 RHOQ_ENST00000238738,NS,carcinoma,0,1 RHOQ NM_012249 exon3 c.A238G p.M80V TACCCAATGACCG . 74.0 3.0 84.0 2.0 . 22 . . . none . . PASS Atlas-SNP SESTD1 91404 hgsc.bcm.edu hg19 2 180016091 180016091 + Missense_Mutation SNP T T A novel TCGA-AL-7173-01A-11D-2136-08 TCGA-AL-7173-10A-01D-2136-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2fd86890-1842-4e9e-9100-f10814f8db6a d279d1dd-cfd3-4527-8aaf-d880d7862c30 . SESTD1 NM_178123 exon6 c.A397T p.T133S AACGAGTCAATTT . 41.0 17.0 46.0 0.0 . 66 . . . none . . PASS Atlas-SNP CUL3 8452 hgsc.bcm.edu hg19 2 225422410 225422410 + Missense_Mutation SNP A A G novel TCGA-AL-7173-01A-11D-2136-08 TCGA-AL-7173-10A-01D-2136-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2fd86890-1842-4e9e-9100-f10814f8db6a d279d1dd-cfd3-4527-8aaf-d880d7862c30 . CUL3 NM_001257198 exon2 c.T248C p.L83P TCTCTTAGTCCAG . 53.0 16.0 35.0 0.0 . 96 . . . none . . PASS Atlas-SNP CUL3 8452 hgsc.bcm.edu hg19 2 225449722 225449722 + Nonsense_Mutation SNP G G T novel TCGA-AL-7173-01A-11D-2136-08 TCGA-AL-7173-10A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2fd86890-1842-4e9e-9100-f10814f8db6a d279d1dd-cfd3-4527-8aaf-d880d7862c30 . CUL3 NM_003590 exon1 c.C5A p.S2X AGATTCGACATGG . 33.0 8.0 39.0 0.0 . 96 . . . none . . PASS Atlas-SNP CRBN 51185 hgsc.bcm.edu hg19 3 3209360 3209360 + Silent SNP T T C novel TCGA-AL-7173-01A-11D-2136-08 TCGA-AL-7173-10A-01D-2136-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2fd86890-1842-4e9e-9100-f10814f8db6a d279d1dd-cfd3-4527-8aaf-d880d7862c30 . CRBN NM_016302 exon5 c.A645G p.R215R GTCTTCTCTTGAG . 155.0 13.0 171.0 0.0 . 29 . . . none . . PASS Atlas-SNP CAPN7 23473 hgsc.bcm.edu hg19 3 15288291 15288291 + Missense_Mutation SNP T T C novel TCGA-AL-7173-01A-11D-2136-08 TCGA-AL-7173-10A-01D-2136-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2fd86890-1842-4e9e-9100-f10814f8db6a d279d1dd-cfd3-4527-8aaf-d880d7862c30 CAPN7,NS,carcinoma,0,1 CAPN7 NM_014296 exon18 c.T2063C p.L688S ACACCTTATCAAA . 37.0 2.0 39.0 0.0 . 63 . . . none . . PASS Atlas-SNP ACAD9 28976 hgsc.bcm.edu hg19 3 128612493 128612493 + Missense_Mutation SNP G G C novel TCGA-AL-7173-01A-11D-2136-08 TCGA-AL-7173-10A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2fd86890-1842-4e9e-9100-f10814f8db6a d279d1dd-cfd3-4527-8aaf-d880d7862c30 ACAD9,NS,carcinoma,0,1 ACAD9 NM_014049 exon3 c.G340C p.E114Q CCAGAAGAATATG . 40.0 2.0 43.0 0.0 . 51 . . . none . . PASS Atlas-SNP COMMD2 51122 hgsc.bcm.edu hg19 3 149468478 149468478 + Missense_Mutation SNP C C T novel TCGA-AL-7173-01A-11D-2136-08 TCGA-AL-7173-10A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2fd86890-1842-4e9e-9100-f10814f8db6a d279d1dd-cfd3-4527-8aaf-d880d7862c30 . COMMD2 NM_016094 exon4 c.G389A p.R130Q TCTAGTCGCCATT . 123.0 25.0 103.0 0.0 . 21 . . . none . . PASS Atlas-SNP FAM194A 131831 hgsc.bcm.edu hg19 3 150421569 150421569 + Silent SNP T T C novel TCGA-AL-7173-01A-11D-2136-08 TCGA-AL-7173-10A-01D-2136-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2fd86890-1842-4e9e-9100-f10814f8db6a d279d1dd-cfd3-4527-8aaf-d880d7862c30 FAM194A,NS,carcinoma,0,2 FAM194A NM_152394 exon1 c.A117G p.E39E CACCTCTTCCTCC . 20.0 3.0 22.0 1.0 . 91 . . . none . . PASS Atlas-SNP FETUB 26998 hgsc.bcm.edu hg19 3 186362554 186362554 + Missense_Mutation SNP A A G novel TCGA-AL-7173-01A-11D-2136-08 TCGA-AL-7173-10A-01D-2136-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2fd86890-1842-4e9e-9100-f10814f8db6a d279d1dd-cfd3-4527-8aaf-d880d7862c30 . FETUB NM_014375 exon4 c.A439G p.I147V AAAAAGATTTACA . 106.0 27.0 156.0 0.0 . 53 . . . none . . PASS Atlas-SNP EGF 1950 hgsc.bcm.edu hg19 4 110865158 110865158 + Missense_Mutation SNP A A T novel TCGA-AL-7173-01A-11D-2136-08 TCGA-AL-7173-10A-01D-2136-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2fd86890-1842-4e9e-9100-f10814f8db6a d279d1dd-cfd3-4527-8aaf-d880d7862c30 . EGF NM_001963 exon4 c.A670T p.S224C GAAGGAAGCAATT . 70.0 20.0 75.0 0.0 . 113 . . . none . . PASS Atlas-SNP MND1 84057 hgsc.bcm.edu hg19 4 154330168 154330168 + Splice_Site SNP G G C novel TCGA-AL-7173-01A-11D-2136-08 TCGA-AL-7173-10A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2fd86890-1842-4e9e-9100-f10814f8db6a d279d1dd-cfd3-4527-8aaf-d880d7862c30 MND1,colon,carcinoma,0,1 MND1 NM_032117 exon7 c.511+1G>C . GGACTGGTATGTA . 46.0 2.0 44.0 0.0 . 18 . . . none . . PASS Atlas-SNP C5orf42 65250 hgsc.bcm.edu hg19 5 37187887 37187887 + Missense_Mutation SNP G G C novel TCGA-AL-7173-01A-11D-2136-08 TCGA-AL-7173-10A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2fd86890-1842-4e9e-9100-f10814f8db6a d279d1dd-cfd3-4527-8aaf-d880d7862c30 . C5orf42 NM_023073 exon22 c.C3869G p.S1290C CTATAGGATAACT . 26.0 5.0 56.0 0.0 . 422 . . . none . . PASS Atlas-SNP C7 730 hgsc.bcm.edu hg19 5 40964972 40964972 + Missense_Mutation SNP C C G novel TCGA-AL-7173-01A-11D-2136-08 TCGA-AL-7173-10A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2fd86890-1842-4e9e-9100-f10814f8db6a d279d1dd-cfd3-4527-8aaf-d880d7862c30 . C7 NM_000587 exon14 c.C1879G p.Q627E CATTGTCAGAGTG . 159.0 8.0 180.0 0.0 . 136 . . . none . . PASS Atlas-SNP SPINK5 11005 hgsc.bcm.edu hg19 5 147510840 147510840 + Missense_Mutation SNP G G C novel TCGA-AL-7173-01A-11D-2136-08 TCGA-AL-7173-10A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2fd86890-1842-4e9e-9100-f10814f8db6a d279d1dd-cfd3-4527-8aaf-d880d7862c30 . SPINK5 NM_001127698 exon32 c.G3073C p.D1025H TGCAAAGACTACC . 239.0 44.0 276.0 0.0 . 245 . . . none . . PASS Atlas-SNP SERPINB9 5272 hgsc.bcm.edu hg19 6 2890546 2890546 + Nonsense_Mutation SNP C C A rs375600576 alternate_allele TCGA-AL-7173-01A-11D-2136-08 TCGA-AL-7173-10A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2fd86890-1842-4e9e-9100-f10814f8db6a d279d1dd-cfd3-4527-8aaf-d880d7862c30 . SERPINB9 NM_004155 exon7 c.G982T p.E328X CTGCCTCGGTGCC . 125.0 10.0 91.0 0.0 . 37 . . . alt . . PASS Atlas-SNP HOXA1 3198 hgsc.bcm.edu hg19 7 27134334 27134334 + Missense_Mutation SNP C C T novel TCGA-AL-7173-01A-11D-2136-08 TCGA-AL-7173-10A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2fd86890-1842-4e9e-9100-f10814f8db6a d279d1dd-cfd3-4527-8aaf-d880d7862c30 . HOXA1 NM_005522 exon2 c.G733A p.E245K CCTTCTCCAGTTC . 205.0 46.0 155.0 0.0 . 64 . . . none . . PASS Atlas-SNP MAGI2 9863 hgsc.bcm.edu hg19 7 78131031 78131031 + Silent SNP C C A novel TCGA-AL-7173-01A-11D-2136-08 TCGA-AL-7173-10A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2fd86890-1842-4e9e-9100-f10814f8db6a d279d1dd-cfd3-4527-8aaf-d880d7862c30 . MAGI2 NM_012301 exon5 c.G828T p.V276V ACTGTACACTGGT . 105.0 22.0 77.0 0.0 . 246 . . . none . . PASS Atlas-SNP PCLO 27445 hgsc.bcm.edu hg19 7 82763823 82763823 + Missense_Mutation SNP C C G novel TCGA-AL-7173-01A-11D-2136-08 TCGA-AL-7173-10A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2fd86890-1842-4e9e-9100-f10814f8db6a d279d1dd-cfd3-4527-8aaf-d880d7862c30 . PCLO NM_014510 exon3 c.G3043C p.A1015P TTGGAGCTTGTTC . 57.0 16.0 60.0 0.0 . 1506 . . . none . . PASS Atlas-SNP CYP3A7 1551 hgsc.bcm.edu hg19 7 99328744 99328744 + Nonsense_Mutation SNP T T A novel TCGA-AL-7173-01A-11D-2136-08 TCGA-AL-7173-10A-01D-2136-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2fd86890-1842-4e9e-9100-f10814f8db6a d279d1dd-cfd3-4527-8aaf-d880d7862c30 . CYP3A7 NM_000765 exon2 c.A103T p.K35X CAAGCTTCTTAAA . 152.0 56.0 104.0 0.0 . 59 . . . none . . PASS Atlas-SNP CUX1 1523 hgsc.bcm.edu hg19 7 101845410 101845410 + Missense_Mutation SNP A A T novel TCGA-AL-7173-01A-11D-2136-08 TCGA-AL-7173-10A-01D-2136-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2fd86890-1842-4e9e-9100-f10814f8db6a d279d1dd-cfd3-4527-8aaf-d880d7862c30 . CUX1 NM_001202543 exon18 c.A2866T p.T956S GTGGACACCATCG . 230.0 78.0 172.0 0.0 . 253 . . . none . . PASS Atlas-SNP MET 4233 hgsc.bcm.edu hg19 7 116417463 116417463 + Missense_Mutation SNP C C T rs121913244 TCGA-AL-7173-01A-11D-2136-08 TCGA-AL-7173-10A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2fd86890-1842-4e9e-9100-f10814f8db6a d279d1dd-cfd3-4527-8aaf-d880d7862c30 MET,colon,carcinoma,0,2 MET NM_001127500 exon16 c.C3334T p.H1112Y GTATATCATGGGA . 181.0 62.0 161.0 0.0 . 412 . . . weak . . PASS Atlas-SNP C7orf55-LUC7L2 100996928 hgsc.bcm.edu hg19 7 139030365 139030365 + Missense_Mutation SNP A A T novel TCGA-AL-7173-01A-11D-2136-08 TCGA-AL-7173-10A-01D-2136-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2fd86890-1842-4e9e-9100-f10814f8db6a d279d1dd-cfd3-4527-8aaf-d880d7862c30 . . NM_001244584 exon2 c.A257T p.K86M ATGGCAAGGGTGA . 81.0 16.0 68.0 0.0 . . . . . none . . PASS Atlas-SNP KEL 3792 hgsc.bcm.edu hg19 7 142658089 142658089 + Missense_Mutation SNP C C A novel TCGA-AL-7173-01A-11D-2136-08 TCGA-AL-7173-10A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2fd86890-1842-4e9e-9100-f10814f8db6a d279d1dd-cfd3-4527-8aaf-d880d7862c30 . KEL NM_000420 exon4 c.G326T p.G109V GCCCTTCCACAGG . 208.0 40.0 191.0 0.0 . 128 . . . none . . PASS Atlas-SNP FBXO43 286151 hgsc.bcm.edu hg19 8 101152996 101152996 + Missense_Mutation SNP C C G novel TCGA-AL-7173-01A-11D-2136-08 TCGA-AL-7173-10A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2fd86890-1842-4e9e-9100-f10814f8db6a d279d1dd-cfd3-4527-8aaf-d880d7862c30 . FBXO43 NM_001029860 exon2 c.G1486C p.D496H AGATGTCCAGTTT . 160.0 36.0 167.0 0.0 . 155 . . . none . . PASS Atlas-SNP FREM1 158326 hgsc.bcm.edu hg19 9 14801824 14801824 + Missense_Mutation SNP C C G novel TCGA-AL-7173-01A-11D-2136-08 TCGA-AL-7173-10A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2fd86890-1842-4e9e-9100-f10814f8db6a d279d1dd-cfd3-4527-8aaf-d880d7862c30 . FREM1 NM_144966 exon21 c.G3520C p.V1174L GGTCCACAGCGCT . 160.0 36.0 227.0 0.0 . 261 . . . none . . PASS Atlas-SNP FCN1 2219 hgsc.bcm.edu hg19 9 137801883 137801883 + Missense_Mutation SNP G G C novel TCGA-AL-7173-01A-11D-2136-08 TCGA-AL-7173-10A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2fd86890-1842-4e9e-9100-f10814f8db6a d279d1dd-cfd3-4527-8aaf-d880d7862c30 . FCN1 NM_002003 exon9 c.C742G p.L248V CCGTTAGAGAATT . 253.0 53.0 283.0 0.0 . 62 . . . none . . PASS Atlas-SNP PLAU 5328 hgsc.bcm.edu hg19 10 75672687 75672687 + Missense_Mutation SNP T T A novel TCGA-AL-7173-01A-11D-2136-08 TCGA-AL-7173-10A-01D-2136-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2fd86890-1842-4e9e-9100-f10814f8db6a d279d1dd-cfd3-4527-8aaf-d880d7862c30 . PLAU NM_002658 exon5 c.T199A p.S67T GATAAGTCAAAAA . 62.0 6.0 75.0 0.0 . 47 . . . none . . PASS Atlas-SNP WDR74 54663 hgsc.bcm.edu hg19 11 62606983 62606983 + Missense_Mutation SNP C C G novel TCGA-AL-7173-01A-11D-2136-08 TCGA-AL-7173-10A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2fd86890-1842-4e9e-9100-f10814f8db6a d279d1dd-cfd3-4527-8aaf-d880d7862c30 . WDR74 NM_018093 exon2 c.G60C p.L20F ACCTTTCAAGATC . 97.0 26.0 104.0 0.0 . 36 . . . none . . PASS Atlas-SNP MMP13 4322 hgsc.bcm.edu hg19 11 102822873 102822873 + Missense_Mutation SNP C C G novel TCGA-AL-7173-01A-11D-2136-08 TCGA-AL-7173-10A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2fd86890-1842-4e9e-9100-f10814f8db6a d279d1dd-cfd3-4527-8aaf-d880d7862c30 MMP13,NS,NS,0,1 MMP13 NM_002427 exon5 c.G667C p.E223Q CGAACTCATGCGC . 179.0 32.0 175.0 0.0 . 75 . . . none . . PASS Atlas-SNP FKBP4 2288 hgsc.bcm.edu hg19 12 2910328 2910328 + Missense_Mutation SNP G G A novel TCGA-AL-7173-01A-11D-2136-08 TCGA-AL-7173-10A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2fd86890-1842-4e9e-9100-f10814f8db6a d279d1dd-cfd3-4527-8aaf-d880d7862c30 . FKBP4 NM_002014 exon9 c.G1078A p.G360R CGCCGGGGAGAGG . 150.0 33.0 115.0 0.0 . 29 . . . none . . PASS Atlas-SNP LRRC23 10233 hgsc.bcm.edu hg19 12 7023220 7023220 + Silent SNP A A C novel TCGA-AL-7173-01A-11D-2136-08 TCGA-AL-7173-10A-01D-2136-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2fd86890-1842-4e9e-9100-f10814f8db6a d279d1dd-cfd3-4527-8aaf-d880d7862c30 . LRRC23 NM_006992 exon7 c.A924C p.A308A GGGTGCAGAATGG . 170.0 65.0 153.0 0.0 . 46 . . . none . . PASS Atlas-SNP CD163 9332 hgsc.bcm.edu hg19 12 7640255 7640255 + Missense_Mutation SNP G G A rs373039092 TCGA-AL-7173-01A-11D-2136-08 TCGA-AL-7173-10A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2fd86890-1842-4e9e-9100-f10814f8db6a d279d1dd-cfd3-4527-8aaf-d880d7862c30 CD163_ENST00000396620,NS,lymphoid_neoplasm,+1,1 CD163 NM_203416 exon8 c.C1750T p.R584C CCAAGCGAATTTC . 166.0 9.0 114.0 0.0 . 221 . . . weak . . PASS Atlas-SNP KERA 11081 hgsc.bcm.edu hg19 12 91449805 91449805 + Missense_Mutation SNP G G C novel TCGA-AL-7173-01A-11D-2136-08 TCGA-AL-7173-10A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2fd86890-1842-4e9e-9100-f10814f8db6a d279d1dd-cfd3-4527-8aaf-d880d7862c30 . KERA NM_007035 exon2 c.C254G p.T85S GGAATGGTTTCTA . 115.0 19.0 116.0 0.0 . 62 . . . none . . PASS Atlas-SNP DDX54 79039 hgsc.bcm.edu hg19 12 113610194 113610194 + Missense_Mutation SNP A A G novel TCGA-AL-7173-01A-11D-2136-08 TCGA-AL-7173-10A-01D-2136-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2fd86890-1842-4e9e-9100-f10814f8db6a d279d1dd-cfd3-4527-8aaf-d880d7862c30 . DDX54 NM_024072 exon11 c.T1243C p.F415L CGGGGAAGCTGTA . 51.0 21.0 48.0 0.0 . 73 . . . none . . PASS Atlas-SNP CDK8 1024 hgsc.bcm.edu hg19 13 26975738 26975738 + Missense_Mutation SNP C C A novel TCGA-AL-7173-01A-11D-2136-08 TCGA-AL-7173-10A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2fd86890-1842-4e9e-9100-f10814f8db6a d279d1dd-cfd3-4527-8aaf-d880d7862c30 . CDK8 NM_001260 exon12 c.C1246A p.L416I GGTGGACTTATCA . 97.0 12.0 117.0 0.0 . 61 . . . none . . PASS Atlas-SNP DIAPH3 81624 hgsc.bcm.edu hg19 13 60566699 60566699 + Missense_Mutation SNP T T A novel TCGA-AL-7173-01A-11D-2136-08 TCGA-AL-7173-10A-01D-2136-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2fd86890-1842-4e9e-9100-f10814f8db6a d279d1dd-cfd3-4527-8aaf-d880d7862c30 . DIAPH3 NM_001042517 exon10 c.A1033T p.I345F CATTGATGAGCTG . 52.0 8.0 42.0 0.0 . 139 . . . none . . PASS Atlas-SNP CPNE6 9362 hgsc.bcm.edu hg19 14 24545747 24545747 + Silent SNP G G A novel TCGA-AL-7173-01A-11D-2136-08 TCGA-AL-7173-10A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2fd86890-1842-4e9e-9100-f10814f8db6a d279d1dd-cfd3-4527-8aaf-d880d7862c30 . CPNE6 NM_006032 exon13 c.G1146A p.P382P TGACCCGGAAAAT . 94.0 30.0 139.0 0.0 . 40 . . . none . . PASS Atlas-SNP SEMA7A 8482 hgsc.bcm.edu hg19 15 74708932 74708932 + Missense_Mutation SNP A A C novel TCGA-AL-7173-01A-11D-2136-08 TCGA-AL-7173-10A-01D-2136-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2fd86890-1842-4e9e-9100-f10814f8db6a d279d1dd-cfd3-4527-8aaf-d880d7862c30 . SEMA7A NM_003612 exon7 c.T785G p.V262G TGGGCCACACGGG . 63.0 18.0 68.0 0.0 . 58 . . . none . . PASS Atlas-SNP ARID3B 10620 hgsc.bcm.edu hg19 15 74884140 74884140 + Missense_Mutation SNP A A G novel TCGA-AL-7173-01A-11D-2136-08 TCGA-AL-7173-10A-01D-2136-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2fd86890-1842-4e9e-9100-f10814f8db6a d279d1dd-cfd3-4527-8aaf-d880d7862c30 . ARID3B NM_006465 exon7 c.A1405G p.R469G AAGATCAGGATCA . 114.0 5.0 109.0 0.0 . 35 . . . none . . PASS Atlas-SNP PEAK1 0 hgsc.bcm.edu hg19 15 77406689 77406689 + Silent SNP G G A novel TCGA-AL-7173-01A-11D-2136-08 TCGA-AL-7173-10A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2fd86890-1842-4e9e-9100-f10814f8db6a d279d1dd-cfd3-4527-8aaf-d880d7862c30 . . NM_024776 exon8 c.C5050T p.L1684L GTACTAGGCTAGG . 137.0 34.0 143.0 0.0 . . . . . none . . PASS Atlas-SNP ZNF423 23090 hgsc.bcm.edu hg19 16 49670185 49670185 + Missense_Mutation SNP T T C novel TCGA-AL-7173-01A-11D-2136-08 TCGA-AL-7173-10A-01D-2136-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2fd86890-1842-4e9e-9100-f10814f8db6a d279d1dd-cfd3-4527-8aaf-d880d7862c30 . ZNF423 NM_015069 exon4 c.A2878G p.M960V GACACATGTAGTG . 62.0 12.0 61.0 0.0 . 463 . . . none . . PASS Atlas-SNP FLII 2314 hgsc.bcm.edu hg19 17 18150655 18150655 + Missense_Mutation SNP A A C novel TCGA-AL-7173-01A-11D-2136-08 TCGA-AL-7173-10A-01D-2136-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2fd86890-1842-4e9e-9100-f10814f8db6a d279d1dd-cfd3-4527-8aaf-d880d7862c30 . FLII NM_002018 exon21 c.T2504G p.F835C TTCTTGAACTTGG . 109.0 18.0 119.0 0.0 . 79 . . . none . . PASS Atlas-SNP ZPBP2 124626 hgsc.bcm.edu hg19 17 38027753 38027753 + Missense_Mutation SNP T T C novel TCGA-AL-7173-01A-11D-2136-08 TCGA-AL-7173-10A-01D-2136-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2fd86890-1842-4e9e-9100-f10814f8db6a d279d1dd-cfd3-4527-8aaf-d880d7862c30 . ZPBP2 NM_199321 exon4 c.T281C p.L94P GACAGCTGATGGT . 59.0 15.0 96.0 0.0 . 33 . . . none . . PASS Atlas-SNP PLVAP 83483 hgsc.bcm.edu hg19 19 17476968 17476968 + Missense_Mutation SNP T T C novel TCGA-AL-7173-01A-11D-2136-08 TCGA-AL-7173-10A-01D-2136-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2fd86890-1842-4e9e-9100-f10814f8db6a d279d1dd-cfd3-4527-8aaf-d880d7862c30 . PLVAP NM_031310 exon2 c.A406G p.I136V AGATGATGGCAGC . 191.0 52.0 196.0 0.0 . 64 . . . none . . PASS Atlas-SNP ZNF780A 284323 hgsc.bcm.edu hg19 19 40581903 40581903 + Missense_Mutation SNP G G C novel TCGA-AL-7173-01A-11D-2136-08 TCGA-AL-7173-10A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2fd86890-1842-4e9e-9100-f10814f8db6a d279d1dd-cfd3-4527-8aaf-d880d7862c30 . ZNF780A NM_001142577 exon6 c.C449G p.P150R TGAGTAGGCAGTT . 76.0 17.0 97.0 0.0 . 156 . . . none . . PASS Atlas-SNP NLRP7 199713 hgsc.bcm.edu hg19 19 55449434 55449434 + Missense_Mutation SNP T T A novel TCGA-AL-7173-01A-11D-2136-08 TCGA-AL-7173-10A-01D-2136-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2fd86890-1842-4e9e-9100-f10814f8db6a d279d1dd-cfd3-4527-8aaf-d880d7862c30 . NLRP7 NM_001127255 exon5 c.A2107T p.T703S GACAGGTGCTACG . 418.0 101.0 421.0 0.0 . 411 . . . none . . PASS Atlas-SNP CHRNA4 1137 hgsc.bcm.edu hg19 20 61982183 61982183 + Missense_Mutation SNP T T C novel TCGA-AL-7173-01A-11D-2136-08 TCGA-AL-7173-10A-01D-2136-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2fd86890-1842-4e9e-9100-f10814f8db6a d279d1dd-cfd3-4527-8aaf-d880d7862c30 . CHRNA4 NM_000744 exon5 c.A580G p.M194V TGTGCATGTTCAC . 96.0 25.0 97.0 0.0 . 98 . . . none . . PASS Atlas-SNP ARFRP1 10139 hgsc.bcm.edu hg19 20 62333531 62333531 + Missense_Mutation SNP G G C novel TCGA-AL-7173-01A-11D-2136-08 TCGA-AL-7173-10A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2fd86890-1842-4e9e-9100-f10814f8db6a d279d1dd-cfd3-4527-8aaf-d880d7862c30 . ARFRP1 NM_001134758 exon5 c.C303G p.D101E GGTGGAGTCAATG . 69.0 20.0 75.0 0.0 . 17 . . . none . . PASS Atlas-SNP ZDHHC8 29801 hgsc.bcm.edu hg19 22 20130720 20130720 + Missense_Mutation SNP C C T novel TCGA-AL-7173-01A-11D-2136-08 TCGA-AL-7173-10A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2fd86890-1842-4e9e-9100-f10814f8db6a d279d1dd-cfd3-4527-8aaf-d880d7862c30 . ZDHHC8 NM_001185024 exon10 c.C1567T p.R523C CTACCCCGCAGCT . 56.0 14.0 74.0 0.0 . 77 . . . none . . PASS Atlas-SNP ADSL 158 hgsc.bcm.edu hg19 22 40745897 40745897 + Missense_Mutation SNP T T A novel TCGA-AL-7173-01A-11D-2136-08 TCGA-AL-7173-10A-01D-2136-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2fd86890-1842-4e9e-9100-f10814f8db6a d279d1dd-cfd3-4527-8aaf-d880d7862c30 . ADSL NM_001123378 exon2 c.T215A p.I72N AGAACATCGACTT . 56.0 11.0 88.0 0.0 . 98 . . . none . . PASS Atlas-SNP PARVG 64098 hgsc.bcm.edu hg19 22 44581694 44581694 + Missense_Mutation SNP A A T novel TCGA-AL-7173-01A-11D-2136-08 TCGA-AL-7173-10A-01D-2136-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2fd86890-1842-4e9e-9100-f10814f8db6a d279d1dd-cfd3-4527-8aaf-d880d7862c30 . PARVG NM_001254742 exon3 c.A287T p.K96M GAGGAAAGAAGAA . 46.0 11.0 29.0 0.0 . 41 . . . none . . PASS Atlas-SNP HDAC10 83933 hgsc.bcm.edu hg19 22 50684494 50684494 + Silent SNP A A G novel TCGA-AL-7173-01A-11D-2136-08 TCGA-AL-7173-10A-01D-2136-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2fd86890-1842-4e9e-9100-f10814f8db6a d279d1dd-cfd3-4527-8aaf-d880d7862c30 . HDAC10 NM_032019 exon18 c.T1678C p.L560L AGCCCAAGATGCA . 47.0 5.0 48.0 0.0 . 29 . . . none . . PASS Atlas-SNP PRKX 5613 hgsc.bcm.edu hg19 X 3544550 3544550 + Missense_Mutation SNP G G C novel TCGA-AL-7173-01A-11D-2136-08 TCGA-AL-7173-10A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2fd86890-1842-4e9e-9100-f10814f8db6a d279d1dd-cfd3-4527-8aaf-d880d7862c30 . PRKX NM_005044 exon5 c.C725G p.P242R AACGGAGGAAACC . 25.0 7.0 24.0 0.0 . 29 . . . none . . PASS Atlas-SNP KIAA2022 340533 hgsc.bcm.edu hg19 X 73961092 73961092 + Silent SNP C C T novel TCGA-AL-7173-01A-11D-2136-08 TCGA-AL-7173-10A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2fd86890-1842-4e9e-9100-f10814f8db6a d279d1dd-cfd3-4527-8aaf-d880d7862c30 . KIAA2022 NM_001008537 exon3 c.G3300A p.E1100E GACACCCTCTTGG . 85.0 4.0 109.0 0.0 . 262 . . . none . . PASS Atlas-SNP TIMP2 7077 hgsc.bcm.edu hg19 17 76867041 76867047 + Frame_Shift_Del DEL GGGGGCC GGGGGCC - novel TCGA-AL-7173-01A-11D-2136-08 TCGA-AL-7173-10A-01D-2136-08 GGGGGCC GGGGGCC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2fd86890-1842-4e9e-9100-f10814f8db6a d279d1dd-cfd3-4527-8aaf-d880d7862c30 . TIMP2 NM_003255 exon3 c.274_280del p.92_94del . . 161.0 10.0 180.0 0.0 . 27 . 0.0621118 0 none . . PASS Atlas-INDEL LARS 51520 hgsc.bcm.edu hg19 5 145552256 145552256 + Frame_Shift_Del DEL T T - novel TCGA-AL-7173-01A-11D-2136-08 TCGA-AL-7173-10A-01D-2136-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2fd86890-1842-4e9e-9100-f10814f8db6a d279d1dd-cfd3-4527-8aaf-d880d7862c30 . LARS NM_020117 exon3 c.208delT p.C70fs . . 62.0 23.0 48.0 0.0 . 100 . 0.370968 0 none . . PASS Atlas-INDEL ITGA1 3672 hgsc.bcm.edu hg19 5 52204750 52204750 + Frame_Shift_Del DEL T T - novel TCGA-AL-7173-01A-11D-2136-08 TCGA-AL-7173-10A-01D-2136-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2fd86890-1842-4e9e-9100-f10814f8db6a d279d1dd-cfd3-4527-8aaf-d880d7862c30 . ITGA1 NM_181501 exon13 c.1477delA p.I493fs . . 145.0 31.0 168.0 0.0 . 112 . 0.213793 0 none . . PASS Atlas-INDEL ST6GAL1 6480 hgsc.bcm.edu hg19 3 186790685 186790685 + Frame_Shift_Del DEL G G - novel TCGA-AL-7173-01A-11D-2136-08 TCGA-AL-7173-10A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2fd86890-1842-4e9e-9100-f10814f8db6a d279d1dd-cfd3-4527-8aaf-d880d7862c30 . ST6GAL1 NM_003032 exon5 c.753delA p.E251fs . . 142.0 29.0 145.0 0.0 . 36 . 0.204225 0 none . . PASS Atlas-INDEL CDK8 1024 hgsc.bcm.edu hg19 13 26975735 26975736 + Frame_Shift_Del DEL GG GG - novel TCGA-AL-7173-01A-11D-2136-08 TCGA-AL-7173-10A-01D-2136-08 GG GG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2fd86890-1842-4e9e-9100-f10814f8db6a d279d1dd-cfd3-4527-8aaf-d880d7862c30 . CDK8 NM_001260 exon12 c.1242_1243del p.414_415del . . 95.0 11.0 117.0 0.0 . 61 . 0.115789 0 none . . PASS Atlas-INDEL ANKDD1A 348094 hgsc.bcm.edu hg19 15 65214185 65214185 + Frame_Shift_Del DEL A A - novel TCGA-AL-7173-01A-11D-2136-08 TCGA-AL-7173-10A-01D-2136-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2fd86890-1842-4e9e-9100-f10814f8db6a d279d1dd-cfd3-4527-8aaf-d880d7862c30 . ANKDD1A NM_182703 exon4 c.332delT p.V111fs . . 80.0 17.0 76.0 0.0 . 47 . 0.2125 0 none . . PASS Atlas-INDEL