Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq TVarRat NVarRat dbSNP_Strength dbSNP_AF dbSNP_PopFreq Confidence Algorithm SCMH1 22955 hgsc.bcm.edu hg19 1 41503104 41503104 + Silent SNP G G A novel TCGA-AL-3473-01A-01D-1252-08 TCGA-AL-3473-10A-01D-1252-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23f15c01-fc74-46bf-8ba5-afc140084aa1 0e794ded-be71-4cd3-932d-121f1b81ecf2 . SCMH1 NM_001172219 exon13 c.C1608T p.H536H GGGCCGGTGCCTT . 181.0 24.0 225.0 0.0 . 120 . . . none . . PASS Atlas-SNP PTGFR 5737 hgsc.bcm.edu hg19 1 78959187 78959187 + Silent SNP G G A novel TCGA-AL-3473-01A-01D-1252-08 TCGA-AL-3473-10A-01D-1252-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23f15c01-fc74-46bf-8ba5-afc140084aa1 0e794ded-be71-4cd3-932d-121f1b81ecf2 PTGFR_ENST00000370758,rectum,carcinoma,0,4 PTGFR NM_000959 exon2 c.G759A p.A253A CCTGGCGATAATG . 127.0 17.0 153.0 0.0 . 121 . . . none . . PASS Atlas-SNP PEX19 5824 hgsc.bcm.edu hg19 1 160253370 160253370 + Missense_Mutation SNP C C T novel TCGA-AL-3473-01A-01D-1252-08 TCGA-AL-3473-10A-01D-1252-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23f15c01-fc74-46bf-8ba5-afc140084aa1 0e794ded-be71-4cd3-932d-121f1b81ecf2 . PEX19 NM_002857 exon2 c.G130A p.A44T CAGGGGCCGTGGT . 200.0 27.0 186.0 0.0 . 34 . . . none . . PASS Atlas-SNP SPHKAP 80309 hgsc.bcm.edu hg19 2 228882137 228882137 + Missense_Mutation SNP C C T novel TCGA-AL-3473-01A-01D-1252-08 TCGA-AL-3473-10A-01D-1252-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23f15c01-fc74-46bf-8ba5-afc140084aa1 0e794ded-be71-4cd3-932d-121f1b81ecf2 . SPHKAP NM_030623 exon7 c.G3433A p.E1145K GTAACTCAAATCC . 157.0 25.0 121.0 0.0 . 750 . . . none . . PASS Atlas-SNP OXSM 54995 hgsc.bcm.edu hg19 3 25832524 25832524 + Missense_Mutation SNP C C A novel TCGA-AL-3473-01A-01D-1252-08 TCGA-AL-3473-10A-01D-1252-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23f15c01-fc74-46bf-8ba5-afc140084aa1 0e794ded-be71-4cd3-932d-121f1b81ecf2 . OXSM NM_017897 exon2 c.C13A p.L5M AACTGCCTGCAAA . 196.0 36.0 278.0 0.0 . 54 . . . none . . PASS Atlas-SNP PROS1 5627 hgsc.bcm.edu hg19 3 93624723 93624723 + Missense_Mutation SNP C C G novel TCGA-AL-3473-01A-01D-1252-08 TCGA-AL-3473-10A-01D-1252-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23f15c01-fc74-46bf-8ba5-afc140084aa1 0e794ded-be71-4cd3-932d-121f1b81ecf2 . PROS1 NM_000313 exon6 c.G506C p.G169A CAACCTCCATTTA . 287.0 47.0 268.0 0.0 . 126 . . . none . . PASS Atlas-SNP GPBP1 65056 hgsc.bcm.edu hg19 5 56542173 56542173 + Silent SNP T T A rs371740495 alternate_allele TCGA-AL-3473-01A-01D-1252-08 TCGA-AL-3473-10A-01D-1252-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23f15c01-fc74-46bf-8ba5-afc140084aa1 0e794ded-be71-4cd3-932d-121f1b81ecf2 . GPBP1 NM_001127236 exon6 c.T546A p.I182I GGTCATTAAGAAA . 68.0 10.0 124.0 0.0 . 51 . . . alt . . PASS Atlas-SNP PCDHA4 56144 hgsc.bcm.edu hg19 5 140188710 140188710 + Silent SNP C C T novel TCGA-AL-3473-01A-01D-1252-08 TCGA-AL-3473-10A-01D-1252-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23f15c01-fc74-46bf-8ba5-afc140084aa1 0e794ded-be71-4cd3-932d-121f1b81ecf2 . PCDHA4 NM_031500 exon1 c.C1938T p.R646R CCACCGCCTACTG . 345.0 50.0 156.0 0.0 . 419 . . . none . . PASS Atlas-SNP ARSI 340075 hgsc.bcm.edu hg19 5 149677875 149677875 + Missense_Mutation SNP G G T novel TCGA-AL-3473-01A-01D-1252-08 TCGA-AL-3473-10A-01D-1252-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23f15c01-fc74-46bf-8ba5-afc140084aa1 0e794ded-be71-4cd3-932d-121f1b81ecf2 . ARSI NM_001012301 exon2 c.C612A p.S204R CTGGCCGCTGAGC . 92.0 4.0 47.0 0.0 . 65 . . . none . . PASS Atlas-SNP NOD1 10392 hgsc.bcm.edu hg19 7 30472766 30472766 + Missense_Mutation SNP A A G novel TCGA-AL-3473-01A-01D-1252-08 TCGA-AL-3473-10A-01D-1252-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23f15c01-fc74-46bf-8ba5-afc140084aa1 0e794ded-be71-4cd3-932d-121f1b81ecf2 . NOD1 NM_006092 exon12 c.T2651C p.V884A TCTGCCACTTCAT . 44.0 8.0 125.0 0.0 . 79 . . . none . . PASS Atlas-SNP CUEDC2 79004 hgsc.bcm.edu hg19 10 104184514 104184514 + Missense_Mutation SNP C C T novel TCGA-AL-3473-01A-01D-1252-08 TCGA-AL-3473-10A-01D-1252-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23f15c01-fc74-46bf-8ba5-afc140084aa1 0e794ded-be71-4cd3-932d-121f1b81ecf2 . CUEDC2 NM_024040 exon3 c.G110A p.G37E AGGACCCCAAGCA . 216.0 30.0 106.0 0.0 . 22 . . . none . . PASS Atlas-SNP SORCS3 22986 hgsc.bcm.edu hg19 10 107022222 107022222 + Missense_Mutation SNP G G C novel TCGA-AL-3473-01A-01D-1252-08 TCGA-AL-3473-10A-01D-1252-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23f15c01-fc74-46bf-8ba5-afc140084aa1 0e794ded-be71-4cd3-932d-121f1b81ecf2 SORCS3,NS,carcinoma,0,1 SORCS3 NM_014978 exon26 c.G3577C p.D1193H CTGCTGGACAAAG . 27.0 2.0 122.0 0.0 . 282 . . . none . . PASS Atlas-SNP MUC2 4583 hgsc.bcm.edu hg19 11 1104253 1104253 + Missense_Mutation SNP G G A novel TCGA-AL-3473-01A-01D-1252-08 TCGA-AL-3473-10A-01D-1252-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23f15c01-fc74-46bf-8ba5-afc140084aa1 0e794ded-be71-4cd3-932d-121f1b81ecf2 . MUC2 NM_002457 exon50 c.G8432A p.G2811E ATCTGGGGAGCGG . 111.0 17.0 36.0 0.0 . 614 . . . none . . PASS Atlas-SNP KRTAP5-5 439915 hgsc.bcm.edu hg19 11 1651483 1651483 + Missense_Mutation SNP G G C novel TCGA-AL-3473-01A-01D-1252-08 TCGA-AL-3473-10A-01D-1252-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23f15c01-fc74-46bf-8ba5-afc140084aa1 0e794ded-be71-4cd3-932d-121f1b81ecf2 KRTAP5-5,NS,carcinoma,0,2 KRTAP5-5 NM_001001480 exon1 c.G413C p.G138A AGGGGGGCTGTGG . 221.0 11.0 105.0 1.0 . 86 . . . none . . PASS Atlas-SNP MRGPRX3 117195 hgsc.bcm.edu hg19 11 18159638 18159638 + Missense_Mutation SNP G G A novel TCGA-AL-3473-01A-01D-1252-08 TCGA-AL-3473-10A-01D-1252-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23f15c01-fc74-46bf-8ba5-afc140084aa1 0e794ded-be71-4cd3-932d-121f1b81ecf2 . MRGPRX3 NM_054031 exon3 c.G889A p.D297N CTGCAGGACACGC . 168.0 10.0 132.0 0.0 . 59 . . . none . . PASS Atlas-SNP SNX15 29907 hgsc.bcm.edu hg19 11 64802325 64802325 + Missense_Mutation SNP T T G novel TCGA-AL-3473-01A-01D-1252-08 TCGA-AL-3473-10A-01D-1252-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23f15c01-fc74-46bf-8ba5-afc140084aa1 0e794ded-be71-4cd3-932d-121f1b81ecf2 . SNX15 NM_147777 exon4 c.T263G p.F88C GCCGGTTTGAAGC . 237.0 27.0 123.0 0.0 . 35 . . . none . . PASS Atlas-SNP BIRC3 330 hgsc.bcm.edu hg19 11 102206814 102206814 + Missense_Mutation SNP T T G novel TCGA-AL-3473-01A-01D-1252-08 TCGA-AL-3473-10A-01D-1252-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23f15c01-fc74-46bf-8ba5-afc140084aa1 0e794ded-be71-4cd3-932d-121f1b81ecf2 . BIRC3 NM_001165 exon7 c.T1442G p.V481G ATGATGTTATTAA . 63.0 12.0 243.0 0.0 . 56 . . . none . . PASS Atlas-SNP OR8G5 219865 hgsc.bcm.edu hg19 11 124135727 124135727 + Silent SNP C C T novel TCGA-AL-3473-01A-01D-1252-08 TCGA-AL-3473-10A-01D-1252-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23f15c01-fc74-46bf-8ba5-afc140084aa1 0e794ded-be71-4cd3-932d-121f1b81ecf2 . . NM_001005198 exon1 c.C1005T p.A335A CGTTGCCCTGAAG . 46.0 11.0 87.0 0.0 . . . . . none . . PASS Atlas-SNP PKNOX2 63876 hgsc.bcm.edu hg19 11 125280693 125280693 + Missense_Mutation SNP C C T novel TCGA-AL-3473-01A-01D-1252-08 TCGA-AL-3473-10A-01D-1252-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23f15c01-fc74-46bf-8ba5-afc140084aa1 0e794ded-be71-4cd3-932d-121f1b81ecf2 . PKNOX2 NM_022062 exon9 c.C737T p.P246L ACCAACCGGTTAC . 137.0 27.0 110.0 0.0 . 60 . . . none . . PASS Atlas-SNP WNK1 65125 hgsc.bcm.edu hg19 12 978188 978188 + Missense_Mutation SNP T T A novel TCGA-AL-3473-01A-01D-1252-08 TCGA-AL-3473-10A-01D-1252-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23f15c01-fc74-46bf-8ba5-afc140084aa1 0e794ded-be71-4cd3-932d-121f1b81ecf2 . WNK1 NM_213655 exon10 c.T3551A p.F1184Y CACTTTTCTTCTG . 315.0 51.0 735.0 1.0 . 403 . . . none . . PASS Atlas-SNP CD27 939 hgsc.bcm.edu hg19 12 6554287 6554287 + Missense_Mutation SNP T T A novel TCGA-AL-3473-01A-01D-1252-08 TCGA-AL-3473-10A-01D-1252-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23f15c01-fc74-46bf-8ba5-afc140084aa1 0e794ded-be71-4cd3-932d-121f1b81ecf2 . CD27 NM_001242 exon1 c.T26A p.L9Q GGTGGCTGTGCGT . 41.0 6.0 25.0 0.0 . 17 . . . none . . PASS Atlas-SNP SOX5 6660 hgsc.bcm.edu hg19 12 24102509 24102509 + Missense_Mutation SNP C C G novel TCGA-AL-3473-01A-01D-1252-08 TCGA-AL-3473-10A-01D-1252-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23f15c01-fc74-46bf-8ba5-afc140084aa1 0e794ded-be71-4cd3-932d-121f1b81ecf2 . SOX5 NM_006940 exon1 c.G27C p.Q9H AAACTCCTGAGGT . 98.0 17.0 140.0 0.0 . 134 . . . none . . PASS Atlas-SNP SRGAP1 57522 hgsc.bcm.edu hg19 12 64377805 64377805 + Missense_Mutation SNP T T A novel TCGA-AL-3473-01A-01D-1252-08 TCGA-AL-3473-10A-01D-1252-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23f15c01-fc74-46bf-8ba5-afc140084aa1 0e794ded-be71-4cd3-932d-121f1b81ecf2 . SRGAP1 NM_020762 exon2 c.T146A p.L49Q AGGATCTGCAAGA . 86.0 12.0 207.0 0.0 . 146 . . . none . . PASS Atlas-SNP METTL17 64745 hgsc.bcm.edu hg19 14 21464719 21464719 + Missense_Mutation SNP G G T novel TCGA-AL-3473-01A-01D-1252-08 TCGA-AL-3473-10A-01D-1252-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23f15c01-fc74-46bf-8ba5-afc140084aa1 0e794ded-be71-4cd3-932d-121f1b81ecf2 . METTL17 NM_022734 exon13 c.G1114T p.V372L TCTATGGTGATCC . 164.0 25.0 171.0 0.0 . 46 . . . none . . PASS Atlas-SNP NID2 22795 hgsc.bcm.edu hg19 14 52485956 52485956 + Missense_Mutation SNP A A C novel TCGA-AL-3473-01A-01D-1252-08 TCGA-AL-3473-10A-01D-1252-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23f15c01-fc74-46bf-8ba5-afc140084aa1 0e794ded-be71-4cd3-932d-121f1b81ecf2 . NID2 NM_007361 exon14 c.T2851G p.Y951D AGGCATACTGGGC . 103.0 27.0 74.0 0.0 . 201 . . . none . . PASS Atlas-SNP KNSTRN 90417 hgsc.bcm.edu hg19 15 40685795 40685795 + Missense_Mutation SNP G G T novel TCGA-AL-3473-01A-01D-1252-08 TCGA-AL-3473-10A-01D-1252-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23f15c01-fc74-46bf-8ba5-afc140084aa1 0e794ded-be71-4cd3-932d-121f1b81ecf2 . . NM_033286 exon9 c.G948T p.M316I AGAAATGTAAGAA . 90.0 18.0 97.0 0.0 . . . . . none . . PASS Atlas-SNP RAB27A 5873 hgsc.bcm.edu hg19 15 55516128 55516128 + Silent SNP T T A novel TCGA-AL-3473-01A-01D-1252-08 TCGA-AL-3473-10A-01D-1252-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23f15c01-fc74-46bf-8ba5-afc140084aa1 0e794ded-be71-4cd3-932d-121f1b81ecf2 . RAB27A NM_183235 exon6 c.A426T p.V142V TTTCACTACTCTC . 91.0 12.0 447.0 0.0 . 18 . . . none . . PASS Atlas-SNP TMC7 79905 hgsc.bcm.edu hg19 16 19073098 19073098 + Splice_Site SNP A A T novel TCGA-AL-3473-01A-01D-1252-08 TCGA-AL-3473-10A-01D-1252-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23f15c01-fc74-46bf-8ba5-afc140084aa1 0e794ded-be71-4cd3-932d-121f1b81ecf2 . TMC7 NM_024847 exon16 c.2107-2A>T . TTTTTTAGGAAAG . 90.0 13.0 83.0 0.0 . 75 . . . none . . PASS Atlas-SNP DNAH3 55567 hgsc.bcm.edu hg19 16 21080893 21080893 + Missense_Mutation SNP C C T novel TCGA-AL-3473-01A-01D-1252-08 TCGA-AL-3473-10A-01D-1252-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23f15c01-fc74-46bf-8ba5-afc140084aa1 0e794ded-be71-4cd3-932d-121f1b81ecf2 DNAH3_ENST00000261383,NS,carcinoma,-1,2 DNAH3 NM_017539 exon23 c.G3224A p.R1075H TGTATGCGAATTA . 96.0 14.0 176.0 0.0 . 1142 . . . none . . PASS Atlas-SNP TMEM107 84314 hgsc.bcm.edu hg19 17 8079579 8079579 + Missense_Mutation SNP G G T novel TCGA-AL-3473-01A-01D-1252-08 TCGA-AL-3473-10A-01D-1252-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23f15c01-fc74-46bf-8ba5-afc140084aa1 0e794ded-be71-4cd3-932d-121f1b81ecf2 . TMEM107 NM_183065 exon1 c.C26A p.P9H CGAGAGGGCACAA . 159.0 21.0 84.0 0.0 . 16 . . . none . . PASS Atlas-SNP TMEM106A 113277 hgsc.bcm.edu hg19 17 41365849 41365849 + Silent SNP C C T novel TCGA-AL-3473-01A-01D-1252-08 TCGA-AL-3473-10A-01D-1252-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23f15c01-fc74-46bf-8ba5-afc140084aa1 0e794ded-be71-4cd3-932d-121f1b81ecf2 . TMEM106A NM_145041 exon4 c.C214T p.L72L CTAGAGCTGGAGA . 165.0 17.0 108.0 0.0 . 20 . . . none . . PASS Atlas-SNP ME2 4200 hgsc.bcm.edu hg19 18 48442562 48442562 + Missense_Mutation SNP C C G novel TCGA-AL-3473-01A-01D-1252-08 TCGA-AL-3473-10A-01D-1252-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23f15c01-fc74-46bf-8ba5-afc140084aa1 0e794ded-be71-4cd3-932d-121f1b81ecf2 . ME2 NM_001168335 exon5 c.C417G p.D139E CTCAGACAGAGGT . 38.0 4.0 234.0 0.0 . 49 . . . none . . PASS Atlas-SNP ACSBG2 81616 hgsc.bcm.edu hg19 19 6177251 6177251 + Missense_Mutation SNP T T G novel TCGA-AL-3473-01A-01D-1252-08 TCGA-AL-3473-10A-01D-1252-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23f15c01-fc74-46bf-8ba5-afc140084aa1 0e794ded-be71-4cd3-932d-121f1b81ecf2 ACSBG2,NS,carcinoma,0,4 ACSBG2 NM_030924 exon8 c.T750G p.I250M GTGGATTGCAGGA . 36.0 6.0 82.0 0.0 . 83 . . . none . . PASS Atlas-SNP APLP1 333 hgsc.bcm.edu hg19 19 36362560 36362560 + Nonsense_Mutation SNP T T A novel TCGA-AL-3473-01A-01D-1252-08 TCGA-AL-3473-10A-01D-1252-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23f15c01-fc74-46bf-8ba5-afc140084aa1 0e794ded-be71-4cd3-932d-121f1b81ecf2 . APLP1 NM_005166 exon5 c.T584A p.L195X TGCTCTTACCCTG . 345.0 57.0 155.0 0.0 . 77 . . . none . . PASS Atlas-SNP ZNF585B 92285 hgsc.bcm.edu hg19 19 37678072 37678072 + Missense_Mutation SNP T T A novel TCGA-AL-3473-01A-01D-1252-08 TCGA-AL-3473-10A-01D-1252-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23f15c01-fc74-46bf-8ba5-afc140084aa1 0e794ded-be71-4cd3-932d-121f1b81ecf2 . ZNF585B NM_152279 exon5 c.A367T p.I123F AATAAATTTTTTG . 88.0 9.0 174.0 0.0 . 91 . . . none . . PASS Atlas-SNP CSE1L 1434 hgsc.bcm.edu hg19 20 47675025 47675025 + Missense_Mutation SNP C C A novel TCGA-AL-3473-01A-01D-1252-08 TCGA-AL-3473-10A-01D-1252-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23f15c01-fc74-46bf-8ba5-afc140084aa1 0e794ded-be71-4cd3-932d-121f1b81ecf2 . CSE1L NM_001256135 exon2 c.C25A p.Q9K AATCTGCAAACAC . 234.0 24.0 173.0 0.0 . 83 . . . none . . PASS Atlas-SNP ZNF512B 57473 hgsc.bcm.edu hg19 20 62598870 62598870 + Missense_Mutation SNP G G A novel TCGA-AL-3473-01A-01D-1252-08 TCGA-AL-3473-10A-01D-1252-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23f15c01-fc74-46bf-8ba5-afc140084aa1 0e794ded-be71-4cd3-932d-121f1b81ecf2 . ZNF512B NM_020713 exon3 c.C128T p.P43L ACCACCGGCATCC . 417.0 69.0 198.0 0.0 . 72 . . . none . . PASS Atlas-SNP COL4A6 1288 hgsc.bcm.edu hg19 X 107433650 107433650 + Missense_Mutation SNP T T G novel TCGA-AL-3473-01A-01D-1252-08 TCGA-AL-3473-10A-01D-1252-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23f15c01-fc74-46bf-8ba5-afc140084aa1 0e794ded-be71-4cd3-932d-121f1b81ecf2 . COL4A6 NM_001847 exon20 c.A1401C p.K467N GTTTCCTTTTGGA . 99.0 38.0 179.0 0.0 . 270 . . . none . . PASS Atlas-SNP LAMB2 3913 hgsc.bcm.edu hg19 3 49167097 49167098 + Frame_Shift_Del DEL GG GG - novel TCGA-AL-3473-01A-01D-1252-08 TCGA-AL-3473-10A-01D-1252-08 GG GG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23f15c01-fc74-46bf-8ba5-afc140084aa1 0e794ded-be71-4cd3-932d-121f1b81ecf2 . LAMB2 NM_002292 exon11 c.1458_1459del p.486_487del . . 127.0 12.0 92.0 0.0 . 156 . 0.0944882 0 none . . PASS Atlas-INDEL KIAA1967 57805 hgsc.bcm.edu hg19 8 22474942 22474942 + Frame_Shift_Del DEL G G - novel TCGA-AL-3473-01A-01D-1252-08 TCGA-AL-3473-10A-01D-1252-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23f15c01-fc74-46bf-8ba5-afc140084aa1 0e794ded-be71-4cd3-932d-121f1b81ecf2 . KIAA1967 NM_021174 exon15 c.1854delT p.D618fs . . 678.0 97.0 332.0 0.0 . 72 . 0.143068 0 none . . PASS Atlas-INDEL BAP1 8314 hgsc.bcm.edu hg19 3 52437889 52437889 + Frame_Shift_Del DEL C C - novel TCGA-AL-3473-01A-01D-1252-08 TCGA-AL-3473-10A-01D-1252-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23f15c01-fc74-46bf-8ba5-afc140084aa1 0e794ded-be71-4cd3-932d-121f1b81ecf2 . BAP1 NM_004656 exon13 c.1273delA p.K425fs . . 333.0 62.0 158.0 0.0 . 371 . 0.186186 0 none . . PASS Atlas-INDEL VHL 7428 hgsc.bcm.edu hg19 3 10188203 10188204 + Frame_Shift_Ins INS - - T novel TCGA-AL-3473-01A-01D-1252-08 TCGA-AL-3473-10A-01D-1252-08 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23f15c01-fc74-46bf-8ba5-afc140084aa1 0e794ded-be71-4cd3-932d-121f1b81ecf2 VHL,colon,carcinoma,-1,3 VHL NM_000551 exon2 c.346_347insT p.L116fs . . 443.0 81.0 308.0 0.0 . 2192 . 0.182844 0 none . . PASS Atlas-INDEL SLC25A42 284439 hgsc.bcm.edu hg19 19 19221630 19221630 + Frame_Shift_Del DEL T T - novel TCGA-AL-3473-01A-01D-1252-08 TCGA-AL-3473-10A-01D-1252-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23f15c01-fc74-46bf-8ba5-afc140084aa1 0e794ded-be71-4cd3-932d-121f1b81ecf2 . SLC25A42 NM_178526 exon8 c.901delA p.I301fs . . 198.0 24.0 106.0 0.0 . 18 . 0.121212 0 none . . PASS Atlas-INDEL PHB 5245 hgsc.bcm.edu hg19 17 47486482 47486483 + Frame_Shift_Del DEL CT CT - novel TCGA-AL-3473-01A-01D-1252-08 TCGA-AL-3473-10A-01D-1252-08 CT CT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23f15c01-fc74-46bf-8ba5-afc140084aa1 0e794ded-be71-4cd3-932d-121f1b81ecf2 . PHB NM_002634 exon5 c.432_433del p.144_145del . . 137.0 17.0 77.0 0.0 . 25 . 0.124088 0 none . . PASS Atlas-INDEL