Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
AGRN	375790	hgsc.bcm.edu	hg19	1	987003	987003	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	AGRN	NM_198576	exon32	c.C5541A	p.F1847L	GGGATTCTCAGGA	.	54.0	19.0	17.0	0.0	.	110	.	.	.	none	.	.	PASS	Atlas-SNP
KLHL21	9903	hgsc.bcm.edu	hg19	1	6659179	6659179	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	KLHL21	NM_014851	exon2	c.A1355G	p.D452G	CCGCAGTCCACCA	.	170.0	56.0	90.0	0.0	.	27	.	.	.	none	.	.	PASS	Atlas-SNP
INPP5B	3633	hgsc.bcm.edu	hg19	1	38343988	38343988	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	INPP5B	NM_005540	exon16	c.T1549C	p.C517R	CACGGCACTTCTC	.	80.0	19.0	42.0	0.0	.	76	.	.	.	none	.	.	PASS	Atlas-SNP
PTGFR	5737	hgsc.bcm.edu	hg19	1	78959108	78959108	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	PTGFR	NM_000959	exon2	c.T680C	p.L227P	TTACACTTTTAAG	.	133.0	39.0	54.0	0.0	.	121	.	.	.	none	.	.	PASS	Atlas-SNP
PTGFR	5737	hgsc.bcm.edu	hg19	1	78959111	78959111	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	PTGFR	NM_000959	exon2	c.T683C	p.L228S	CACTTTTAAGAGT	.	131.0	38.0	55.0	0.0	.	121	.	.	.	none	.	.	PASS	Atlas-SNP
SLC6A17	388662	hgsc.bcm.edu	hg19	1	110740214	110740214	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	SLC6A17	NM_001010898	exon11	c.A1808G	p.K603R	GGATCAAGGAGGA	.	22.0	11.0	7.0	0.0	.	86	.	.	.	none	.	.	PASS	Atlas-SNP
PDE4DIP	9659	hgsc.bcm.edu	hg19	1	144874782	144874782	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	PDE4DIP	NM_014644	exon30	c.G4826A	p.S1609N	GAGGTGCTGCTGG	.	170.0	24.0	92.0	0.0	.	817	.	.	.	none	.	.	PASS	Atlas-SNP
CELF3	11189	hgsc.bcm.edu	hg19	1	151678722	151678722	+	Silent	SNP	T	T	C	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	CELF3,caecum,carcinoma,0,1	CELF3	NM_007185	exon10	c.A1104G	p.Q368Q	CTGCTGTTGCTGC	.	34.0	4.0	23.0	0.0	.	49	.	.	.	none	.	.	PASS	Atlas-SNP
CR1L	1379	hgsc.bcm.edu	hg19	1	207881586	207881586	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	CR1L	NM_175710	exon10	c.C1392G	p.S464R	TTGGAGCATGAAG	.	267.0	72.0	147.0	0.0	.	97	.	.	.	none	.	.	PASS	Atlas-SNP
OBSCN	84033	hgsc.bcm.edu	hg19	1	228520936	228520936	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	OBSCN	NM_001271223	exon69	c.G18639C	p.E6213D	TGATGAGGGCCAG	.	140.0	50.0	60.0	0.0	.	2142	.	.	.	none	.	.	PASS	Atlas-SNP
EML6	400954	hgsc.bcm.edu	hg19	2	55191764	55191764	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	EML6	NM_001039753	exon37	c.C5388A	p.F1796L	TGACTTCTATGAC	.	183.0	71.0	104.0	0.0	.	85	.	.	.	none	.	.	PASS	Atlas-SNP
ANXA4	307	hgsc.bcm.edu	hg19	2	70039804	70039804	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	ANXA4	NM_001153	exon8	c.A497T	p.N166I	AAGGAAATTATCT	.	78.0	28.0	19.0	0.0	.	34	.	.	.	none	.	.	PASS	Atlas-SNP
MPHOSPH10	10199	hgsc.bcm.edu	hg19	2	71360588	71360588	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	MPHOSPH10	NM_005791	exon2	c.T650G	p.I217R	AAAACATAGAAAA	.	394.0	162.0	186.0	0.0	.	81	.	.	.	none	.	.	PASS	Atlas-SNP
IMMT	10989	hgsc.bcm.edu	hg19	2	86371557	86371557	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	IMMT	NM_006839	exon15	c.A2111T	p.E704V	GCTAGCTCCAGAT	.	146.0	43.0	58.0	0.0	.	65	.	.	.	none	.	.	PASS	Atlas-SNP
SMPD4	55627	hgsc.bcm.edu	hg19	2	130912744	130912744	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	SMPD4	NM_017951	exon15	c.C1495T	p.P499S	GCTTGGGGCTGAC	.	83.0	20.0	59.0	0.0	.	67	.	.	.	none	.	.	PASS	Atlas-SNP
DNAJC10	54431	hgsc.bcm.edu	hg19	2	183594619	183594619	+	Silent	SNP	G	G	T	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	DNAJC10	NM_001271581	exon8	c.G678T	p.V226V	TTTAGTGAGTTTT	.	346.0	111.0	147.0	0.0	.	76	.	.	.	none	.	.	PASS	Atlas-SNP
HSPE1	3336	hgsc.bcm.edu	hg19	2	198365881	198365881	+	Silent	SNP	A	A	G	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	HSPE1	NM_002157	exon2	c.A87G	p.G29G	CAAAGGAGGCATT	.	367.0	141.0	187.0	0.0	.	2	.	.	.	none	.	.	PASS	Atlas-SNP
NIF3L1	60491	hgsc.bcm.edu	hg19	2	201768315	201768315	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	NIF3L1	NM_001136039	exon7	c.C1048A	p.L350I	TCTGACCTTCGAG	.	241.0	85.0	106.0	0.0	.	51	.	.	.	none	.	.	PASS	Atlas-SNP
KLHL18	23276	hgsc.bcm.edu	hg19	3	47374712	47374712	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	KLHL18	NM_025010	exon5	c.G666T	p.E222D	GCCTGAGCTGCTG	.	79.0	21.0	44.0	0.0	.	46	.	.	.	none	.	.	PASS	Atlas-SNP
KLHL18	23276	hgsc.bcm.edu	hg19	3	47374713	47374713	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	KLHL18	NM_025010	exon5	c.C667A	p.L223M	CCTGAGCTGCTGT	.	81.0	23.0	45.0	0.0	.	46	.	.	.	none	.	.	PASS	Atlas-SNP
TMF1	7110	hgsc.bcm.edu	hg19	3	69072460	69072460	+	Silent	SNP	T	T	C	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	TMF1	NM_007114	exon17	c.A3150G	p.Q1050Q	GTACCTTTGATCC	.	196.0	61.0	80.0	0.0	.	77	.	.	.	none	.	.	PASS	Atlas-SNP
NDUFB4	4710	hgsc.bcm.edu	hg19	3	120320001	120320001	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	NDUFB4	NM_004547	exon2	c.A224G	p.N75S	CAATAAATGTCTA	.	179.0	71.0	60.0	0.0	.	21	.	.	.	none	.	.	PASS	Atlas-SNP
NMD3	51068	hgsc.bcm.edu	hg19	3	160964158	160964158	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	NMD3	NM_015938	exon12	c.C1052T	p.S351F	AGACATCTGAAAT	.	79.0	33.0	30.0	0.0	.	49	.	.	.	none	.	.	PASS	Atlas-SNP
PARL	55486	hgsc.bcm.edu	hg19	3	183602604	183602604	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	PARL	NM_018622	exon1	c.T31C	p.W11R	AGCCCCAGCCTCT	.	37.0	13.0	17.0	0.0	.	32	.	.	.	none	.	.	PASS	Atlas-SNP
MUC4	4585	hgsc.bcm.edu	hg19	3	195505787	195505787	+	Missense_Mutation	SNP	C	C	T	rs11915935	bycluster;byhapmap	TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	MUC4	NM_018406	exon2	c.G12664A	p.A4222T	GGGTGGCGTGACC	.	119.0	8.0	60.0	0.0	.	1505	.	.	.	weak	.	.	PASS	Atlas-SNP
MUC4	4585	hgsc.bcm.edu	hg19	3	195505790	195505790	+	Missense_Mutation	SNP	G	G	C	rs11928301	byhapmap	TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	MUC4	NM_018406	exon2	c.C12661G	p.H4221D	TGGCGTGACCTGT	.	120.0	9.0	60.0	0.0	.	1505	.	.	.	weak	.	.	PASS	Atlas-SNP
MUC4	4585	hgsc.bcm.edu	hg19	3	195517971	195517971	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	MUC4	NM_018406	exon2	c.A480T	p.E160D	AGAACTTTCAGTT	.	111.0	45.0	38.0	0.0	.	1505	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF721	170960	hgsc.bcm.edu	hg19	4	436719	436719	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	ZNF721	NM_133474	exon3	c.G1537C	p.G513R	TTGTGGAACTAGT	.	126.0	41.0	31.0	0.0	.	205	.	.	.	none	.	.	PASS	Atlas-SNP
TMEM192	201931	hgsc.bcm.edu	hg19	4	166000935	166000935	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	TMEM192	NM_001100389	exon6	c.C691A	p.L231I	CTTCTAGGCTTGA	.	76.0	27.0	36.0	0.0	.	21	.	.	.	none	.	.	PASS	Atlas-SNP
PPARGC1B	133522	hgsc.bcm.edu	hg19	5	149213062	149213062	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	PPARGC1B,colon,carcinoma,0,1	PPARGC1B	NM_133263	exon5	c.G1426A	p.V476M	TGCCCCGTGCGGC	.	82.0	27.0	52.0	0.0	.	74	.	.	.	none	.	.	PASS	Atlas-SNP
GALNT10	55568	hgsc.bcm.edu	hg19	5	153755929	153755929	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	GALNT10	NM_198321	exon5	c.C661T	p.R221X	AGGACCCGAATGC	.	159.0	61.0	88.0	0.0	.	70	.	.	.	none	.	.	PASS	Atlas-SNP
CPEB4	80315	hgsc.bcm.edu	hg19	5	173317154	173317154	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	CPEB4	NM_030627	exon1	c.T418G	p.L140V	CCAGTGTTGACAG	.	111.0	8.0	51.0	0.0	.	54	.	.	.	none	.	.	PASS	Atlas-SNP
CDHR2	54825	hgsc.bcm.edu	hg19	5	176018324	176018324	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	CDHR2	NM_017675	exon29	c.G3653A	p.R1218Q	CTGAGCGGTGAGC	.	122.0	44.0	52.0	0.0	.	152	.	.	.	none	.	.	PASS	Atlas-SNP
DSP	1832	hgsc.bcm.edu	hg19	6	7583589	7583589	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	DSP	NM_004415	exon24	c.G6094A	p.V2032I	TCTTTGGTAGAGG	.	114.0	32.0	49.0	0.0	.	306	.	.	.	none	.	.	PASS	Atlas-SNP
BMP6	654	hgsc.bcm.edu	hg19	6	7727541	7727541	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	BMP6,NS,carcinoma,0,1	BMP6	NM_001718	exon1	c.A353T	p.Q118L	AGCAGCAGCTGCC	.	95.0	5.0	53.0	1.0	.	67	.	.	.	none	.	.	PASS	Atlas-SNP
TMEM170B	100113407	hgsc.bcm.edu	hg19	6	11575733	11575733	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	TMEM170B	NM_001100829	exon3	c.G338T	p.G113V	TATGGGGCGTTGG	.	134.0	36.0	75.0	0.0	.	9	.	.	.	none	.	.	PASS	Atlas-SNP
ECT2L	345930	hgsc.bcm.edu	hg19	6	139135653	139135653	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	ECT2L	NM_001195037	exon3	c.T92C	p.I31T	CTCTTATAAGTCA	.	112.0	45.0	48.0	0.0	.	75	.	.	.	none	.	.	PASS	Atlas-SNP
CITED2	10370	hgsc.bcm.edu	hg19	6	139694869	139694869	+	Silent	SNP	A	A	G	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	CITED2	NM_001168389	exon2	c.T228C	p.H76H	CATCGCATGCCTG	.	33.0	11.0	20.0	0.0	.	16	.	.	.	none	.	.	PASS	Atlas-SNP
RADIL	55698	hgsc.bcm.edu	hg19	7	4841357	4841357	+	Silent	SNP	G	G	A	rs369296363		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	RADIL,right_upper_lobe,carcinoma,0,1	RADIL	NM_018059	exon12	c.C2769T	p.G923G	GGGGCCGCCGGAC	.	300.0	118.0	111.0	0.0	.	110	.	.	.	weak	.	.	PASS	Atlas-SNP
VWDE	221806	hgsc.bcm.edu	hg19	7	12375822	12375822	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	VWDE	NM_001135924	exon27	c.T4599G	p.I1533M	GGGCGCAATGCAT	.	292.0	128.0	86.0	0.0	.	123	.	.	.	none	.	.	PASS	Atlas-SNP
PRRT4	401399	hgsc.bcm.edu	hg19	7	127991277	127991277	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	PRRT4	NM_001174164	exon6	c.G2333C	p.G778A	GCCTCCCCTGATC	.	56.0	21.0	14.0	0.0	.	31	.	.	.	none	.	.	PASS	Atlas-SNP
SGK196	0	hgsc.bcm.edu	hg19	8	42977953	42977953	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	.	NM_032237	exon5	c.A986G	p.E329G	TTCTGGAGACCTA	.	64.0	23.0	33.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
FER1L6	654463	hgsc.bcm.edu	hg19	8	124992806	124992806	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	FER1L6	NM_001039112	exon11	c.G1165A	p.E389K	TTTGGGGAAGGTG	.	278.0	93.0	115.0	0.0	.	268	.	.	.	none	.	.	PASS	Atlas-SNP
ZBTB5	9925	hgsc.bcm.edu	hg19	9	37441549	37441549	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	ZBTB5	NM_014872	exon2	c.C1000A	p.L334M	AGCTCAGGGGCTC	.	45.0	12.0	20.0	0.0	.	43	.	.	.	none	.	.	PASS	Atlas-SNP
ABCA1	19	hgsc.bcm.edu	hg19	9	107578436	107578436	+	Silent	SNP	C	C	T	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	ABCA1	NM_005502	exon25	c.G3726A	p.T1242T	CAGGGTCGTCTCT	.	120.0	51.0	44.0	0.0	.	244	.	.	.	none	.	.	PASS	Atlas-SNP
COQ4	51117	hgsc.bcm.edu	hg19	9	131095205	131095205	+	Silent	SNP	G	G	A	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	COQ4	NM_016035	exon6	c.G609A	p.P203P	TGGACCGATCCGA	.	184.0	68.0	86.0	0.0	.	20	.	.	.	none	.	.	PASS	Atlas-SNP
SURF2	6835	hgsc.bcm.edu	hg19	9	136227264	136227264	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	SURF2	NM_017503	exon5	c.G641T	p.R214M	AGAGCAGGAGAGA	.	52.0	19.0	30.0	0.0	.	9	.	.	.	none	.	.	PASS	Atlas-SNP
NOTCH1	4851	hgsc.bcm.edu	hg19	9	139407915	139407915	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	NOTCH1	NM_017617	exon14	c.C2282A	p.P761H	ACACAAGGGTTGG	.	68.0	20.0	30.0	0.0	.	1980	.	.	.	none	.	.	PASS	Atlas-SNP
SKIDA1	387640	hgsc.bcm.edu	hg19	10	21805486	21805486	+	Silent	SNP	C	C	T	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	C10orf140_ENST00000449193,rectum,carcinoma,0,4	.	NM_207371	exon4	c.G1266A	p.E422E	TTCCTCCTCCTCC	.	53.0	7.0	35.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
BMS1	9790	hgsc.bcm.edu	hg19	10	43294061	43294061	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	BMS1	NM_014753	exon12	c.G2235T	p.W745C	TGACTGGGATTTA	.	173.0	7.0	80.0	0.0	.	132	.	.	.	none	.	.	PASS	Atlas-SNP
C10orf12	26148	hgsc.bcm.edu	hg19	10	98741939	98741939	+	Silent	SNP	T	T	G	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	C10orf12	NM_015652	exon1	c.T792G	p.S264S	CACCTCTCACGAG	.	110.0	37.0	65.0	0.0	.	94	.	.	.	none	.	.	PASS	Atlas-SNP
PDCD4	27250	hgsc.bcm.edu	hg19	10	112655819	112655819	+	Silent	SNP	A	A	G	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	PDCD4	NM_014456	exon11	c.A1323G	p.K441K	TTCCAAACAACTC	.	205.0	64.0	86.0	0.0	.	39	.	.	.	none	.	.	PASS	Atlas-SNP
SLC22A10	387775	hgsc.bcm.edu	hg19	11	63065116	63065116	+	Silent	SNP	A	A	T	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	SLC22A10	NM_001039752	exon4	c.A747T	p.G249G	CCTGGGAGGCTTG	.	156.0	64.0	85.0	0.0	.	79	.	.	.	none	.	.	PASS	Atlas-SNP
SLC22A10	387775	hgsc.bcm.edu	hg19	11	63071636	63071636	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	SLC22A10	NM_001039752	exon8	c.A1342G	p.T448A	GCTGCTACTTTTT	.	75.0	26.0	41.0	0.0	.	79	.	.	.	none	.	.	PASS	Atlas-SNP
MAML2	84441	hgsc.bcm.edu	hg19	11	95825254	95825254	+	Silent	SNP	C	C	T	rs61749250	bycluster	TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	MAML2,caecum,carcinoma,0,2	MAML2	NM_032427	exon2	c.G1941A	p.Q647Q	CTGCTGCTGTTGT	.	76.0	4.0	40.0	1.0	.	94	.	.	.	weak	.	.	PASS	Atlas-SNP
NPAT	4863	hgsc.bcm.edu	hg19	11	108043550	108043550	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	NPAT	NM_002519	exon13	c.G2161A	p.D721N	TATCATCAGTATT	.	66.0	21.0	36.0	0.0	.	124	.	.	.	none	.	.	PASS	Atlas-SNP
BCL9L	283149	hgsc.bcm.edu	hg19	11	118773516	118773516	+	Silent	SNP	C	C	A	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	BCL9L	NM_182557	exon6	c.G936T	p.P312P	AGGGGCCGGGGGT	.	10.0	5.0	3.0	0.0	.	254	.	.	.	none	.	.	PASS	Atlas-SNP
SOX5	6660	hgsc.bcm.edu	hg19	12	23757377	23757377	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	SOX5,colon,carcinoma,0,1	SOX5	NM_006940	exon9	c.T1108C	p.S370P	TAGGAGATACAGC	.	125.0	33.0	51.0	0.0	.	134	.	.	.	none	.	.	PASS	Atlas-SNP
ADCY6	112	hgsc.bcm.edu	hg19	12	49168249	49168249	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	ADCY6	NM_020983	exon14	c.C2219T	p.A740V	CTATGTGCCCGTG	.	182.0	88.0	84.0	0.0	.	81	.	.	.	none	.	.	PASS	Atlas-SNP
HOXC4	3221	hgsc.bcm.edu	hg19	12	54447788	54447788	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	HOXC4	NM_014620	exon3	c.T82A	p.Y28N	AATAGCTACATCC	.	205.0	40.0	72.0	0.0	.	29	.	.	.	none	.	.	PASS	Atlas-SNP
HCAR1	27198	hgsc.bcm.edu	hg19	12	123214112	123214112	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	HCAR1	NM_032554	exon1	c.G775A	p.A259T	GCAGGGCCCCATG	.	213.0	92.0	78.0	0.0	.	21	.	.	.	none	.	.	PASS	Atlas-SNP
GPR133	283383	hgsc.bcm.edu	hg19	12	131471648	131471648	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	GPR133	NM_198827	exon6	c.T499G	p.W167G	CCCTATTGGACTC	.	120.0	25.0	46.0	0.0	.	136	.	.	.	none	.	.	PASS	Atlas-SNP
COG6	57511	hgsc.bcm.edu	hg19	13	40251678	40251678	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	COG6	NM_001145079	exon5	c.A502G	p.S168G	GAAATGAGTCTTC	.	113.0	36.0	53.0	0.0	.	49	.	.	.	none	.	.	PASS	Atlas-SNP
IPO5	3843	hgsc.bcm.edu	hg19	13	98667795	98667795	+	Silent	SNP	A	A	T	rs61750357	alternate_allele	TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	IPO5	NM_002271	exon23	c.A2391T	p.V797V	TGAAGTAATGGGA	.	167.0	61.0	85.0	0.0	.	90	.	.	.	alt	.	.	PASS	Atlas-SNP
CCDC168	643677	hgsc.bcm.edu	hg19	13	103401232	103401232	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	.	NM_001146197	exon4	c.G1815C	p.K605N	CTTTTCCTTTTTA	.	169.0	62.0	75.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
ATP11A	23250	hgsc.bcm.edu	hg19	13	113474213	113474213	+	Splice_Site	SNP	G	G	A	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	ATP11A	NM_015205	exon8	c.675-1G>A	.	TCGCCAGGTTCGT	.	57.0	18.0	10.0	0.0	.	225	.	.	.	none	.	.	PASS	Atlas-SNP
ZSCAN29	146050	hgsc.bcm.edu	hg19	15	43653718	43653718	+	Silent	SNP	T	T	C	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	ZSCAN29	NM_152455	exon5	c.A2112G	p.K704K	ATAAGGTTTCTCT	.	155.0	43.0	64.0	0.0	.	57	.	.	.	none	.	.	PASS	Atlas-SNP
FAM154B	283726	hgsc.bcm.edu	hg19	15	82575198	82575198	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	FAM154B	NM_001008226	exon3	c.C992A	p.T331K	TCCCAACAGAGAG	.	402.0	132.0	171.0	0.0	.	50	.	.	.	none	.	.	PASS	Atlas-SNP
ALPK3	57538	hgsc.bcm.edu	hg19	15	85407685	85407685	+	Silent	SNP	G	G	A	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	ALPK3	NM_020778	exon12	c.G5118A	p.L1706L	CCCACTGTATCTG	.	122.0	47.0	55.0	0.0	.	289	.	.	.	none	.	.	PASS	Atlas-SNP
NDUFB10	4716	hgsc.bcm.edu	hg19	16	2011289	2011289	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	NDUFB10	NM_004548	exon2	c.A266T	p.D89V	AGAGGGACTAGTA	.	94.0	32.0	38.0	0.0	.	17	.	.	.	none	.	.	PASS	Atlas-SNP
TRAP1	10131	hgsc.bcm.edu	hg19	16	3712967	3712967	+	Silent	SNP	G	G	A	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	TRAP1	NM_016292	exon15	c.C1710T	p.A570A	CTCGGCGGCTGCG	.	27.0	10.0	12.0	0.0	.	53	.	.	.	none	.	.	PASS	Atlas-SNP
KDM6B	23135	hgsc.bcm.edu	hg19	17	7748926	7748926	+	Silent	SNP	C	C	A	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	KDM6B	NM_001080424	exon4	c.C54A	p.A18A	CTTTGCCCTTGGG	.	184.0	40.0	72.0	0.0	.	95	.	.	.	none	.	.	PASS	Atlas-SNP
ELAC2	60528	hgsc.bcm.edu	hg19	17	12898190	12898190	+	Silent	SNP	A	A	G	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	ELAC2	NM_018127	exon21	c.T1920C	p.C640C	CACCAGACAGGTC	.	121.0	60.0	41.0	0.0	.	48	.	.	.	none	.	.	PASS	Atlas-SNP
TBC1D28	254272	hgsc.bcm.edu	hg19	17	18541949	18541949	+	Silent	SNP	A	A	G	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	TBC1D28	NM_001039397	exon7	c.T264C	p.Y88Y	GCTCCTATATTTT	.	142.0	60.0	59.0	0.0	.	14	.	.	.	none	.	.	PASS	Atlas-SNP
MSL1	339287	hgsc.bcm.edu	hg19	17	38282491	38282491	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	MSL1	NM_001012241	exon3	c.A35G	p.N12S	AGGATAACGAGAA	.	231.0	110.0	92.0	0.0	.	21	.	.	.	none	.	.	PASS	Atlas-SNP
C17orf64	124773	hgsc.bcm.edu	hg19	17	58503225	58503225	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	C17orf64	NM_181707	exon2	c.G133A	p.D45N	GGCCTGGATCAGG	.	118.0	62.0	64.0	0.0	.	19	.	.	.	none	.	.	PASS	Atlas-SNP
PIAS2	9063	hgsc.bcm.edu	hg19	18	44416377	44416377	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	PIAS2	NM_173206	exon9	c.C1145T	p.T382I	ATCCAGGTGGGCT	.	329.0	44.0	153.0	0.0	.	85	.	.	.	none	.	.	PASS	Atlas-SNP
ILVBL	10994	hgsc.bcm.edu	hg19	19	15226103	15226103	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	ILVBL	NM_006844	exon16	c.T1859C	p.I620T	CTCCCAATGAGGA	.	76.0	24.0	58.0	0.0	.	54	.	.	.	none	.	.	PASS	Atlas-SNP
VSTM2B	342865	hgsc.bcm.edu	hg19	19	30018224	30018224	+	Silent	SNP	T	T	A	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	VSTM2B	NM_001146339	exon2	c.T189A	p.I63I	GGAGATTCAGTGG	.	46.0	19.0	15.0	0.0	.	15	.	.	.	none	.	.	PASS	Atlas-SNP
VSTM2B	342865	hgsc.bcm.edu	hg19	19	30018225	30018225	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	VSTM2B	NM_001146339	exon2	c.C190A	p.Q64K	GAGATTCAGTGGT	.	44.0	16.0	15.0	0.0	.	15	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF536	9745	hgsc.bcm.edu	hg19	19	31040126	31040126	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	ZNF536	NM_014717	exon4	c.C3600G	p.D1200E	CAAAGACAGCAGC	.	81.0	30.0	59.0	0.0	.	424	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF146	7705	hgsc.bcm.edu	hg19	19	36727612	36727612	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	ZNF146	NM_001099638	exon3	c.C270A	p.H90Q	TACGCACCAGAAA	.	190.0	79.0	90.0	0.0	.	32	.	.	.	none	.	.	PASS	Atlas-SNP
GYS1	2997	hgsc.bcm.edu	hg19	19	49485593	49485593	+	Silent	SNP	A	A	G	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	GYS1	NM_002103	exon7	c.T981C	p.F327F	GGCGATAAAGAAG	.	171.0	62.0	82.0	0.0	.	59	.	.	.	none	.	.	PASS	Atlas-SNP
TMEM86B	255043	hgsc.bcm.edu	hg19	19	55740079	55740079	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	TMEM86B	NM_173804	exon1	c.A31G	p.K11E	GAGTCTTCAGGGT	.	107.0	40.0	68.0	0.0	.	12	.	.	.	none	.	.	PASS	Atlas-SNP
AHCY	191	hgsc.bcm.edu	hg19	20	32878681	32878681	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	AHCY	NM_000687	exon6	c.G622A	p.D208N	TCACATCTGTGGC	.	112.0	42.0	60.0	0.0	.	43	.	.	.	none	.	.	PASS	Atlas-SNP
KIAA1755	85449	hgsc.bcm.edu	hg19	20	36874404	36874404	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	KIAA1755	NM_001029864	exon2	c.A128G	p.D43G	AGCCCATCCCCCT	.	84.0	4.0	41.0	0.0	.	145	.	.	.	none	.	.	PASS	Atlas-SNP
SLC13A3	64849	hgsc.bcm.edu	hg19	20	45217868	45217868	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	SLC13A3	NM_022829	exon7	c.T947C	p.I316T	GTTCTTATCTCAG	.	152.0	35.0	77.0	0.0	.	88	.	.	.	none	.	.	PASS	Atlas-SNP
MTMR3	8897	hgsc.bcm.edu	hg19	22	30403186	30403186	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	MTMR3	NM_153050	exon10	c.A755C	p.H252P	ATGAGCATCTGGT	.	92.0	28.0	40.0	0.0	.	106	.	.	.	none	.	.	PASS	Atlas-SNP
CARD10	29775	hgsc.bcm.edu	hg19	22	37898635	37898635	+	Silent	SNP	C	C	G	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	CARD10	NM_014550	exon11	c.G1761C	p.R587R	ACAGCCCCGAGCC	.	63.0	21.0	27.0	0.0	.	55	.	.	.	none	.	.	PASS	Atlas-SNP
SLC6A8	6535	hgsc.bcm.edu	hg19	X	152958793	152958793	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	SLC6A8	NM_005629	exon6	c.T988C	p.Y330H	GGCAGCTACAACC	.	114.0	5.0	79.0	0.0	.	34	.	.	.	none	.	.	PASS	Atlas-SNP
RIMS1	22999	hgsc.bcm.edu	hg19	6	73017054	73017055	+	Frame_Shift_Del	DEL	AT	AT	-	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	AT	AT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	RIMS1	NM_014989	exon27	c.3943_3944del	p.1315_1315del	.	.	118.0	34.0	64.0	0.0	.	278	.	0.288136	0	none	.	.	PASS	Atlas-Indel,Pindel
RINT1	60561	hgsc.bcm.edu	hg19	7	105189036	105189036	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	RINT1	NM_021930	exon7	c.874delG	p.E292fs	.	.	197.0	62.0	53.0	0.0	.	65	.	0.314721	0	none	.	.	PASS	Atlas-Indel,Pindel
ACOT11	26027	hgsc.bcm.edu	hg19	1	55059680	55059687	+	Frame_Shift_Del	DEL	GCCACCTT	GCCACCTT	-	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	GCCACCTT	GCCACCTT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	ACOT11	NM_147161	exon5	c.438_445del	p.146_149del	.	.	49.0	13.0	43.0	0.0	.	105	.	0.265306	0	none	.	.	PASS	Atlas-Indel,Pindel
RNPEP	6051	hgsc.bcm.edu	hg19	1	201958580	201958590	+	Frame_Shift_Del	DEL	TTCCAGATGTG	TTCCAGATGTG	-	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	TTCCAGATGTG	TTCCAGATGTG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	RNPEP	NM_020216	exon3	c.657_667del	p.219_223del	.	.	161.0	36.0	70.0	0.0	.	39	.	0.223602	0	none	.	.	PASS	Atlas-Indel,Pindel
ZZEF1	23140	hgsc.bcm.edu	hg19	17	3980188	3980189	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	ZZEF1	NM_015113	exon20	c.3085_3086insA	p.V1029fs	.	.	222.0	121.0	71.0	0.0	.	195	.	0.545045	0	none	.	.	PASS	Atlas-Indel,Pindel