Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq TVarRat NVarRat dbSNP_Strength dbSNP_AF dbSNP_PopFreq Confidence Algorithm TMEM52 339456 hgsc.bcm.edu hg19 1 1850654 1850654 + Silent SNP G G C novel TCGA-A4-A5XZ-01A-11D-A31X-10 TCGA-A4-A5XZ-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 363096af-a78b-4834-a631-bebac9ce1659 9f1e35f9-8141-463b-a1b9-3fc7a83df607 TMEM52,NS,carcinoma,0,1 TMEM52 NM_178545 exon1 c.C51G p.L17L CGGCAGGAGCGGC . 3.0 3.0 2.0 0.0 . 21 . . . none . . PASS Atlas-SNP PRKCZ 5590 hgsc.bcm.edu hg19 1 2066777 2066777 + Silent SNP C C T novel TCGA-A4-A5XZ-01A-11D-A31X-10 TCGA-A4-A5XZ-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 363096af-a78b-4834-a631-bebac9ce1659 9f1e35f9-8141-463b-a1b9-3fc7a83df607 . PRKCZ NM_002744 exon5 c.C411T p.R137R CAAGCGCTTTAAC . 32.0 18.0 41.0 0.0 . 84 . . . none . . PASS Atlas-SNP ZNF644 84146 hgsc.bcm.edu hg19 1 91403569 91403569 + Nonsense_Mutation SNP G G T novel TCGA-A4-A5XZ-01A-11D-A31X-10 TCGA-A4-A5XZ-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 363096af-a78b-4834-a631-bebac9ce1659 9f1e35f9-8141-463b-a1b9-3fc7a83df607 . ZNF644 NM_201269 exon4 c.C3161A p.S1054X TGATTTGATAATC . 37.0 16.0 38.0 0.0 . 120 . . . none . . PASS Atlas-SNP SUSD4 55061 hgsc.bcm.edu hg19 1 223536686 223536686 + Missense_Mutation SNP T T C novel TCGA-A4-A5XZ-01A-11D-A31X-10 TCGA-A4-A5XZ-10A-01D-A31X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 363096af-a78b-4834-a631-bebac9ce1659 9f1e35f9-8141-463b-a1b9-3fc7a83df607 . SUSD4 NM_017982 exon2 c.A82G p.R28G AGAGTCTCTGGGG . 132.0 44.0 142.0 0.0 . 82 . . . none . . PASS Atlas-SNP CLEC4F 165530 hgsc.bcm.edu hg19 2 71036918 71036918 + Silent SNP G G A novel TCGA-A4-A5XZ-01A-11D-A31X-10 TCGA-A4-A5XZ-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 363096af-a78b-4834-a631-bebac9ce1659 9f1e35f9-8141-463b-a1b9-3fc7a83df607 . CLEC4F NM_173535 exon6 c.C1611T p.S537S GCGCCAGGAGCCC . 88.0 25.0 57.0 0.0 . 95 . . . none . . PASS Atlas-SNP KIF1A 547 hgsc.bcm.edu hg19 2 241696843 241696843 + Missense_Mutation SNP C C A novel TCGA-A4-A5XZ-01A-11D-A31X-10 TCGA-A4-A5XZ-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 363096af-a78b-4834-a631-bebac9ce1659 9f1e35f9-8141-463b-a1b9-3fc7a83df607 . KIF1A NM_001244008 exon27 c.G2751T p.E917D CTCATCCTCCTCC . 98.0 5.0 74.0 0.0 . 152 . . . none . . PASS Atlas-SNP HDLBP 3069 hgsc.bcm.edu hg19 2 242196033 242196033 + Silent SNP T T C rs200251201 TCGA-A4-A5XZ-01A-11D-A31X-10 TCGA-A4-A5XZ-10A-01D-A31X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 363096af-a78b-4834-a631-bebac9ce1659 9f1e35f9-8141-463b-a1b9-3fc7a83df607 . HDLBP NM_001243900 exon7 c.A747G p.L249L GATGAGTAAGACT . 131.0 35.0 119.0 0.0 . 118 . . . weak T|0.999;C|0.001 0.001 PASS Atlas-SNP CADM2 253559 hgsc.bcm.edu hg19 3 85851274 85851274 + Missense_Mutation SNP G G C novel TCGA-A4-A5XZ-01A-11D-A31X-10 TCGA-A4-A5XZ-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 363096af-a78b-4834-a631-bebac9ce1659 9f1e35f9-8141-463b-a1b9-3fc7a83df607 . CADM2 NM_001167675 exon3 c.G166C p.D56H AGGGTTGATCAAA . 110.0 6.0 113.0 0.0 . 195 . . . none . . PASS Atlas-SNP ALDH1L1 10840 hgsc.bcm.edu hg19 3 125826081 125826081 + Missense_Mutation SNP A A C novel TCGA-A4-A5XZ-01A-11D-A31X-10 TCGA-A4-A5XZ-10A-01D-A31X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 363096af-a78b-4834-a631-bebac9ce1659 9f1e35f9-8141-463b-a1b9-3fc7a83df607 . ALDH1L1 NM_001270364 exon21 c.T2386G p.F796V GCTCAAAGAAGAA . 56.0 36.0 32.0 0.0 . 138 . . . none . . PASS Atlas-SNP DDX60L 91351 hgsc.bcm.edu hg19 4 169382991 169382991 + Silent SNP C C T rs17612630 bycluster;byfrequency;byhapmap;by1000genomes;alternate_allele TCGA-A4-A5XZ-01A-11D-A31X-10 TCGA-A4-A5XZ-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 363096af-a78b-4834-a631-bebac9ce1659 9f1e35f9-8141-463b-a1b9-3fc7a83df607 . DDX60L NM_001012967 exon5 c.G465A p.T155T AAGGTACGTTTGT . 93.0 21.0 108.0 0.0 . 116 . . . alt C|0.904;A|0.096 . PASS Atlas-SNP IK 3550 hgsc.bcm.edu hg19 5 140034136 140034136 + Missense_Mutation SNP A A C novel TCGA-A4-A5XZ-01A-11D-A31X-10 TCGA-A4-A5XZ-10A-01D-A31X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 363096af-a78b-4834-a631-bebac9ce1659 9f1e35f9-8141-463b-a1b9-3fc7a83df607 . IK NM_006083 exon7 c.A555C p.E185D AGAGGAAGAGGAA . 467.0 155.0 516.0 1.0 . 46 . . . none . . PASS Atlas-SNP PCDHA12 56137 hgsc.bcm.edu hg19 5 140256291 140256291 + Missense_Mutation SNP G G A novel TCGA-A4-A5XZ-01A-11D-A31X-10 TCGA-A4-A5XZ-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 363096af-a78b-4834-a631-bebac9ce1659 9f1e35f9-8141-463b-a1b9-3fc7a83df607 PCDHA12,NS,carcinoma,0,2 PCDHA12 NM_018903 exon1 c.G1234A p.A412T GACAGCGCCCTGG . 174.0 8.0 171.0 0.0 . 196 . . . none . . PASS Atlas-SNP NFYA 4800 hgsc.bcm.edu hg19 6 41059422 41059422 + Missense_Mutation SNP G G A novel TCGA-A4-A5XZ-01A-11D-A31X-10 TCGA-A4-A5XZ-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 363096af-a78b-4834-a631-bebac9ce1659 9f1e35f9-8141-463b-a1b9-3fc7a83df607 . NFYA NM_002505 exon7 c.G703A p.G235R TCAGGAGGGATGG . 55.0 21.0 58.0 0.0 . 33 . . . none . . PASS Atlas-SNP NOD1 10392 hgsc.bcm.edu hg19 7 30492406 30492406 + Silent SNP G G A novel TCGA-A4-A5XZ-01A-11D-A31X-10 TCGA-A4-A5XZ-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 363096af-a78b-4834-a631-bebac9ce1659 9f1e35f9-8141-463b-a1b9-3fc7a83df607 . NOD1 NM_006092 exon6 c.C627T p.S209S CAGCATGGACTTG . 83.0 23.0 53.0 0.0 . 79 . . . none . . PASS Atlas-SNP ZNF273 10793 hgsc.bcm.edu hg19 7 64388953 64388953 + Missense_Mutation SNP C C G novel TCGA-A4-A5XZ-01A-11D-A31X-10 TCGA-A4-A5XZ-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 363096af-a78b-4834-a631-bebac9ce1659 9f1e35f9-8141-463b-a1b9-3fc7a83df607 . ZNF273 NM_021148 exon4 c.C1247G p.T416S CCACAACTCTTAC . 169.0 77.0 103.0 0.0 . 45 . . . none . . PASS Atlas-SNP ABCB4 5244 hgsc.bcm.edu hg19 7 87049331 87049331 + Missense_Mutation SNP T T C novel TCGA-A4-A5XZ-01A-11D-A31X-10 TCGA-A4-A5XZ-10A-01D-A31X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 363096af-a78b-4834-a631-bebac9ce1659 9f1e35f9-8141-463b-a1b9-3fc7a83df607 . ABCB4 NM_018850 exon19 c.A2377G p.K793E TTGCTTTAAAAGC . 148.0 64.0 111.0 0.0 . 177 . . . none . . PASS Atlas-SNP ARHGAP22 58504 hgsc.bcm.edu hg19 10 49659052 49659052 + Missense_Mutation SNP C C G novel TCGA-A4-A5XZ-01A-11D-A31X-10 TCGA-A4-A5XZ-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 363096af-a78b-4834-a631-bebac9ce1659 9f1e35f9-8141-463b-a1b9-3fc7a83df607 . ARHGAP22 NM_001256024 exon9 c.G1168C p.E390Q TGACCTCCTCGGA . 60.0 25.0 82.0 0.0 . 94 . . . none . . PASS Atlas-SNP DDN 23109 hgsc.bcm.edu hg19 12 49390815 49390815 + Missense_Mutation SNP A A T novel TCGA-A4-A5XZ-01A-11D-A31X-10 TCGA-A4-A5XZ-10A-01D-A31X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 363096af-a78b-4834-a631-bebac9ce1659 9f1e35f9-8141-463b-a1b9-3fc7a83df607 . DDN NM_015086 exon2 c.T1844A p.V615E CGGGACACGGCTT . 28.0 13.0 25.0 0.0 . 54 . . . none . . PASS Atlas-SNP ZIC2 7546 hgsc.bcm.edu hg19 13 100635322 100635322 + Missense_Mutation SNP G G A novel TCGA-A4-A5XZ-01A-11D-A31X-10 TCGA-A4-A5XZ-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 363096af-a78b-4834-a631-bebac9ce1659 9f1e35f9-8141-463b-a1b9-3fc7a83df607 . ZIC2 NM_007129 exon1 c.G1004A p.C335Y TCCCCTGCCCCTT . 87.0 26.0 114.0 0.0 . 25 . . . none . . PASS Atlas-SNP SCFD1 23256 hgsc.bcm.edu hg19 14 31175075 31175075 + Missense_Mutation SNP A A T novel TCGA-A4-A5XZ-01A-11D-A31X-10 TCGA-A4-A5XZ-10A-01D-A31X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 363096af-a78b-4834-a631-bebac9ce1659 9f1e35f9-8141-463b-a1b9-3fc7a83df607 . SCFD1 NM_016106 exon18 c.A1537T p.T513S AGCACTACCACTA . 70.0 20.0 58.0 0.0 . 43 . . . none . . PASS Atlas-SNP ZFYVE26 23503 hgsc.bcm.edu hg19 14 68252617 68252617 + Missense_Mutation SNP C C T novel TCGA-A4-A5XZ-01A-11D-A31X-10 TCGA-A4-A5XZ-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 363096af-a78b-4834-a631-bebac9ce1659 9f1e35f9-8141-463b-a1b9-3fc7a83df607 . ZFYVE26 NM_015346 exon18 c.G3262A p.D1088N CCTGATCTAGCTG . 80.0 26.0 116.0 0.0 . 223 . . . none . . PASS Atlas-SNP EXD2 55218 hgsc.bcm.edu hg19 14 69697234 69697234 + Missense_Mutation SNP G G C novel TCGA-A4-A5XZ-01A-11D-A31X-10 TCGA-A4-A5XZ-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 363096af-a78b-4834-a631-bebac9ce1659 9f1e35f9-8141-463b-a1b9-3fc7a83df607 . EXD2 NM_001193361 exon4 c.G636C p.E212D CGCTGAGACTGTT . 68.0 21.0 89.0 0.0 . 43 . . . none . . PASS Atlas-SNP ADAM20 8748 hgsc.bcm.edu hg19 14 70989617 70989617 + Missense_Mutation SNP A A C novel TCGA-A4-A5XZ-01A-11D-A31X-10 TCGA-A4-A5XZ-10A-01D-A31X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 363096af-a78b-4834-a631-bebac9ce1659 9f1e35f9-8141-463b-a1b9-3fc7a83df607 . ADAM20 NM_003814 exon2 c.T2008G p.C670G GGATGCAGATCTT . 103.0 36.0 122.0 0.0 . 59 . . . none . . PASS Atlas-SNP ELMSAN1 91748 hgsc.bcm.edu hg19 14 74206660 74206660 + Missense_Mutation SNP A A T novel TCGA-A4-A5XZ-01A-11D-A31X-10 TCGA-A4-A5XZ-10A-01D-A31X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 363096af-a78b-4834-a631-bebac9ce1659 9f1e35f9-8141-463b-a1b9-3fc7a83df607 . . NM_194278 exon2 c.T52A p.F18I CCCCGAAGAGGCA . 39.0 15.0 55.0 0.0 . . . . . none . . PASS Atlas-SNP BCL2L10 10017 hgsc.bcm.edu hg19 15 52404725 52404725 + Missense_Mutation SNP A A T novel TCGA-A4-A5XZ-01A-11D-A31X-10 TCGA-A4-A5XZ-10A-01D-A31X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 363096af-a78b-4834-a631-bebac9ce1659 9f1e35f9-8141-463b-a1b9-3fc7a83df607 . BCL2L10 NM_020396 exon1 c.T199A p.Y67N CGAGGTAGGCGGA . 31.0 12.0 61.0 0.0 . 10 . . . none . . PASS Atlas-SNP ULK3 25989 hgsc.bcm.edu hg19 15 75132623 75132623 + Silent SNP C C T novel TCGA-A4-A5XZ-01A-11D-A31X-10 TCGA-A4-A5XZ-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 363096af-a78b-4834-a631-bebac9ce1659 9f1e35f9-8141-463b-a1b9-3fc7a83df607 . ULK3 NM_001099436 exon6 c.G648A p.R216R GAACGACCTGGAG . 40.0 16.0 41.0 0.0 . 30 . . . none . . PASS Atlas-SNP CLDN9 9080 hgsc.bcm.edu hg19 16 3063765 3063765 + Silent SNP C C A novel TCGA-A4-A5XZ-01A-11D-A31X-10 TCGA-A4-A5XZ-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 363096af-a78b-4834-a631-bebac9ce1659 9f1e35f9-8141-463b-a1b9-3fc7a83df607 . CLDN9 NM_020982 exon1 c.C402A p.I134I GCTCATCCCTGTG . 102.0 55.0 82.0 0.0 . 33 . . . none . . PASS Atlas-SNP SMG8 55181 hgsc.bcm.edu hg19 17 57288259 57288259 + Missense_Mutation SNP C C A novel TCGA-A4-A5XZ-01A-11D-A31X-10 TCGA-A4-A5XZ-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 363096af-a78b-4834-a631-bebac9ce1659 9f1e35f9-8141-463b-a1b9-3fc7a83df607 . SMG8 NM_018149 exon1 c.C847A p.Q283K CGGAACCAAGACC . 74.0 5.0 41.0 0.0 . 79 . . . none . . PASS Atlas-SNP POLRMT 5442 hgsc.bcm.edu hg19 19 623528 623528 + Missense_Mutation SNP T T C novel TCGA-A4-A5XZ-01A-11D-A31X-10 TCGA-A4-A5XZ-10A-01D-A31X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 363096af-a78b-4834-a631-bebac9ce1659 9f1e35f9-8141-463b-a1b9-3fc7a83df607 . POLRMT NM_005035 exon6 c.A1216G p.M406V GCTCCATGTGGAG . 52.0 11.0 71.0 0.0 . 91 . . . none . . PASS Atlas-SNP KEAP1 9817 hgsc.bcm.edu hg19 19 10610566 10610566 + Silent SNP G G T novel TCGA-A4-A5XZ-01A-11D-A31X-10 TCGA-A4-A5XZ-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 363096af-a78b-4834-a631-bebac9ce1659 9f1e35f9-8141-463b-a1b9-3fc7a83df607 . KEAP1 NM_012289 exon2 c.C144A p.G48G GCGGTTGCCATGC . 63.0 24.0 62.0 0.0 . 182 . . . none . . PASS Atlas-SNP MLL4 8085 hgsc.bcm.edu hg19 19 36229181 36229181 + Splice_Site SNP A A G novel TCGA-A4-A5XZ-01A-11D-A31X-10 TCGA-A4-A5XZ-10A-01D-A31X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 363096af-a78b-4834-a631-bebac9ce1659 9f1e35f9-8141-463b-a1b9-3fc7a83df607 . MLL4 NM_014727 exon37 c.7873-2A>G . CCCTGCAGGGCAT . 36.0 15.0 56.0 0.0 . 229 . . . none . . PASS Atlas-SNP COL9A3 1299 hgsc.bcm.edu hg19 20 61467549 61467549 + Missense_Mutation SNP G G T novel TCGA-A4-A5XZ-01A-11D-A31X-10 TCGA-A4-A5XZ-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 363096af-a78b-4834-a631-bebac9ce1659 9f1e35f9-8141-463b-a1b9-3fc7a83df607 . COL9A3 NM_001853 exon28 c.G1412T p.R471L GCAGTCGAGGGGA . 81.0 22.0 82.0 0.0 . 70 . . . none . . PASS Atlas-SNP TANGO2 128989 hgsc.bcm.edu hg19 22 20030918 20030918 + Missense_Mutation SNP C C T novel TCGA-A4-A5XZ-01A-11D-A31X-10 TCGA-A4-A5XZ-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 363096af-a78b-4834-a631-bebac9ce1659 9f1e35f9-8141-463b-a1b9-3fc7a83df607 . TANGO2 NM_152906 exon3 c.C97T p.P33S AGCCGACCCTCCA . 95.0 28.0 75.0 0.0 . 4 . . . none . . PASS Atlas-SNP BCOR 54880 hgsc.bcm.edu hg19 X 39932148 39932148 + Silent SNP A A G novel TCGA-A4-A5XZ-01A-11D-A31X-10 TCGA-A4-A5XZ-10A-01D-A31X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 363096af-a78b-4834-a631-bebac9ce1659 9f1e35f9-8141-463b-a1b9-3fc7a83df607 . BCOR NM_001123385 exon4 c.T2451C p.T817T TGTGTCAGTTTTA . 72.0 36.0 97.0 0.0 . 351 . . . none . . PASS Atlas-SNP YIPF3 25844 hgsc.bcm.edu hg19 6 43483379 43483379 + Frame_Shift_Del DEL T T - novel TCGA-A4-A5XZ-01A-11D-A31X-10 TCGA-A4-A5XZ-10A-01D-A31X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 363096af-a78b-4834-a631-bebac9ce1659 9f1e35f9-8141-463b-a1b9-3fc7a83df607 . YIPF3 NM_015388 exon3 c.350delT p.I117fs . . 81.0 32.0 102.0 0.0 . 20 . 0.395062 0 none . . PASS Atlas-Indel,Pindel OGDH 4967 hgsc.bcm.edu hg19 7 44747231 44747232 + Frame_Shift_Ins INS - - A novel TCGA-A4-A5XZ-01A-11D-A31X-10 TCGA-A4-A5XZ-10A-01D-A31X-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 363096af-a78b-4834-a631-bebac9ce1659 9f1e35f9-8141-463b-a1b9-3fc7a83df607 . OGDH NM_002541 exon22 c.2847_2848insA p.P949fs . . 102.0 38.0 55.0 0.0 . 145 . 0.372549 0 none . . PASS Atlas-Indel,Pindel FOXN1 8456 hgsc.bcm.edu hg19 17 26851949 26851949 + Frame_Shift_Del DEL C C - novel TCGA-A4-A5XZ-01A-11D-A31X-10 TCGA-A4-A5XZ-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 363096af-a78b-4834-a631-bebac9ce1659 9f1e35f9-8141-463b-a1b9-3fc7a83df607 . FOXN1 NM_003593 exon2 c.551delT p.L184fs . . 62.0 21.0 25.0 0.0 . 51 . 0.33871 0 none . . PASS Atlas-Indel,Pindel ATP2B1 490 hgsc.bcm.edu hg19 12 89992987 89992988 + Frame_Shift_Ins INS - - AA novel TCGA-A4-A5XZ-01A-11D-A31X-10 TCGA-A4-A5XZ-10A-01D-A31X-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 363096af-a78b-4834-a631-bebac9ce1659 9f1e35f9-8141-463b-a1b9-3fc7a83df607 . ATP2B1 NM_001001323 exon19 c.3258_3259insTT p.L1086fs . . 83.0 30.0 66.0 0.0 . 191 . 0.361 . none . . PASS Pindel THSD1 55901 hgsc.bcm.edu hg19 13 52971551 52971551 + Frame_Shift_Del DEL G G - novel TCGA-A4-A5XZ-01A-11D-A31X-10 TCGA-A4-A5XZ-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 363096af-a78b-4834-a631-bebac9ce1659 9f1e35f9-8141-463b-a1b9-3fc7a83df607 . THSD1 NM_018676 exon3 c.838delA p.R280fs . . 117.0 27.0 84.0 0.0 . 89 . 0.231 . none . . PASS Pindel ACOX2 8309 hgsc.bcm.edu hg19 3 58519841 58519842 + Frame_Shift_Ins INS - - TATATTT novel TCGA-A4-A5XZ-01A-11D-A31X-10 TCGA-A4-A5XZ-10A-01D-A31X-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 363096af-a78b-4834-a631-bebac9ce1659 9f1e35f9-8141-463b-a1b9-3fc7a83df607 . ACOX2 NM_003500 exon4 c.355_356insAAATATA p.H119fs . . 65.0 12.0 81.0 0.0 . 53 . 0.185 . none . . PASS Pindel