Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq TVarRat NVarRat dbSNP_Strength dbSNP_AF dbSNP_PopFreq Confidence Algorithm TAS1R1 80835 hgsc.bcm.edu hg19 1 6639633 6639633 + Missense_Mutation SNP G G A novel TCGA-A4-A5DU-01A-11D-A28G-10 TCGA-A4-A5DU-10A-01D-A28G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4423a137-3e9c-4910-bff6-0f282d79e89a 61c2e34f-6a63-434c-becd-e6537a9b7df9 . TAS1R1 NM_138697 exon6 c.G2515A p.G839S CGCTGCGGCTCCA . 32.0 12.0 32.0 0.0 . 76 . . . none . . PASS Atlas-SNP HIVEP3 59269 hgsc.bcm.edu hg19 1 41978641 41978641 + Missense_Mutation SNP G G A novel TCGA-A4-A5DU-01A-11D-A28G-10 TCGA-A4-A5DU-10A-01D-A28G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4423a137-3e9c-4910-bff6-0f282d79e89a 61c2e34f-6a63-434c-becd-e6537a9b7df9 . HIVEP3 NM_024503 exon8 c.C6251T p.A2084V GGCGGCGCTGACC . 98.0 4.0 59.0 0.0 . 235 . . . none . . PASS Atlas-SNP RORC 6097 hgsc.bcm.edu hg19 1 151785765 151785765 + Missense_Mutation SNP G G A novel TCGA-A4-A5DU-01A-11D-A28G-10 TCGA-A4-A5DU-10A-01D-A28G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4423a137-3e9c-4910-bff6-0f282d79e89a 61c2e34f-6a63-434c-becd-e6537a9b7df9 . RORC NM_005060 exon8 c.C1124T p.T375M AAGACCGTGCGGT . 97.0 41.0 79.0 0.0 . 70 . . . none . . PASS Atlas-SNP FASLG 356 hgsc.bcm.edu hg19 1 172634980 172634980 + Missense_Mutation SNP A A G rs111238176 TCGA-A4-A5DU-01A-11D-A28G-10 TCGA-A4-A5DU-10A-01D-A28G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4423a137-3e9c-4910-bff6-0f282d79e89a 61c2e34f-6a63-434c-becd-e6537a9b7df9 . FASLG NM_000639 exon4 c.A670G p.M224V CTGGTGATGATGG . 103.0 46.0 94.0 0.0 . 44 . . . weak A|0.500;G|0.500 0.500 PASS Atlas-SNP PIGR 5284 hgsc.bcm.edu hg19 1 207112530 207112530 + Missense_Mutation SNP A A G novel TCGA-A4-A5DU-01A-11D-A28G-10 TCGA-A4-A5DU-10A-01D-A28G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4423a137-3e9c-4910-bff6-0f282d79e89a 61c2e34f-6a63-434c-becd-e6537a9b7df9 . PIGR NM_002644 exon3 c.T322C p.Y108H ACTTGTAGCGCCC . 158.0 56.0 149.0 0.0 . 98 . . . none . . PASS Atlas-SNP PPM1B 5495 hgsc.bcm.edu hg19 2 44457731 44457731 + Silent SNP T T C novel TCGA-A4-A5DU-01A-11D-A28G-10 TCGA-A4-A5DU-10A-01D-A28G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4423a137-3e9c-4910-bff6-0f282d79e89a 61c2e34f-6a63-434c-becd-e6537a9b7df9 . PPM1B NM_002706 exon6 c.T1314C p.S438S TACTTCTTCGAAC . 197.0 131.0 150.0 0.0 . 97 . . . none . . PASS Atlas-SNP PRKCE 5581 hgsc.bcm.edu hg19 2 45879246 45879246 + Missense_Mutation SNP G G C novel TCGA-A4-A5DU-01A-11D-A28G-10 TCGA-A4-A5DU-10A-01D-A28G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4423a137-3e9c-4910-bff6-0f282d79e89a 61c2e34f-6a63-434c-becd-e6537a9b7df9 . PRKCE NM_005400 exon1 c.G7C p.V3L ATGGTAGTGTTCA . 55.0 28.0 33.0 0.0 . 58 . . . none . . PASS Atlas-SNP ABCA12 26154 hgsc.bcm.edu hg19 2 215865727 215865727 + Missense_Mutation SNP G G C novel TCGA-A4-A5DU-01A-11D-A28G-10 TCGA-A4-A5DU-10A-01D-A28G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4423a137-3e9c-4910-bff6-0f282d79e89a 61c2e34f-6a63-434c-becd-e6537a9b7df9 . ABCA12 NM_173076 exon22 c.C2881G p.P961A TAGAAGGAAGCTT . 51.0 18.0 46.0 0.0 . 368 . . . none . . PASS Atlas-SNP TNS1 7145 hgsc.bcm.edu hg19 2 218713569 218713569 + Missense_Mutation SNP C C G novel TCGA-A4-A5DU-01A-11D-A28G-10 TCGA-A4-A5DU-10A-01D-A28G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4423a137-3e9c-4910-bff6-0f282d79e89a 61c2e34f-6a63-434c-becd-e6537a9b7df9 . TNS1 NM_022648 exon17 c.G1296C p.L432F GGGACTCAAGGCA . 125.0 47.0 98.0 0.0 . 251 . . . none . . PASS Atlas-SNP NISCH 11188 hgsc.bcm.edu hg19 3 52526011 52526011 + Missense_Mutation SNP C C T rs369447186 TCGA-A4-A5DU-01A-11D-A28G-10 TCGA-A4-A5DU-10A-01D-A28G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4423a137-3e9c-4910-bff6-0f282d79e89a 61c2e34f-6a63-434c-becd-e6537a9b7df9 . NISCH NM_007184 exon21 c.C4028T p.P1343L AGGCCCCAGCCCT . 137.0 36.0 107.0 0.0 . 97 . . . weak . . PASS Atlas-SNP IL6ST 3572 hgsc.bcm.edu hg19 5 55237637 55237637 + Missense_Mutation SNP T T A novel TCGA-A4-A5DU-01A-11D-A28G-10 TCGA-A4-A5DU-10A-01D-A28G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4423a137-3e9c-4910-bff6-0f282d79e89a 61c2e34f-6a63-434c-becd-e6537a9b7df9 . IL6ST NM_002184 exon17 c.A2030T p.N677I TTTGAATTAAAAT . 135.0 55.0 170.0 0.0 . 75 . . . none . . PASS Atlas-SNP FHL5 9457 hgsc.bcm.edu hg19 6 97051597 97051597 + Silent SNP A A G novel TCGA-A4-A5DU-01A-11D-A28G-10 TCGA-A4-A5DU-10A-01D-A28G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4423a137-3e9c-4910-bff6-0f282d79e89a 61c2e34f-6a63-434c-becd-e6537a9b7df9 FHL5,NS,carcinoma,+1,1 FHL5 NM_020482 exon3 c.A108G p.V36V TCGTGTATTTTCT . 73.0 28.0 85.0 0.0 . 73 . . . none . . PASS Atlas-SNP ZMIZ2 83637 hgsc.bcm.edu hg19 7 44796552 44796552 + Missense_Mutation SNP G G A novel TCGA-A4-A5DU-01A-11D-A28G-10 TCGA-A4-A5DU-10A-01D-A28G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4423a137-3e9c-4910-bff6-0f282d79e89a 61c2e34f-6a63-434c-becd-e6537a9b7df9 . ZMIZ2 NM_174929 exon3 c.G172A p.G58R GTTTTGGGGAACC . 97.0 43.0 63.0 0.0 . 82 . . . none . . PASS Atlas-SNP PON2 5445 hgsc.bcm.edu hg19 7 95040981 95040981 + Missense_Mutation SNP G G T novel TCGA-A4-A5DU-01A-11D-A28G-10 TCGA-A4-A5DU-10A-01D-A28G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4423a137-3e9c-4910-bff6-0f282d79e89a 61c2e34f-6a63-434c-becd-e6537a9b7df9 . PON2 NM_000305 exon5 c.C478A p.H160N GCTCATGTTTGAC . 98.0 47.0 99.0 0.0 . 32 . . . none . . PASS Atlas-SNP PDP1 54704 hgsc.bcm.edu hg19 8 94934633 94934633 + Nonsense_Mutation SNP C C T novel TCGA-A4-A5DU-01A-11D-A28G-10 TCGA-A4-A5DU-10A-01D-A28G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4423a137-3e9c-4910-bff6-0f282d79e89a 61c2e34f-6a63-434c-becd-e6537a9b7df9 . PDP1 NM_001161780 exon3 c.C421T p.Q141X AGCAATCAGCTGC . 81.0 37.0 95.0 0.0 . 97 . . . none . . PASS Atlas-SNP DDX50 79009 hgsc.bcm.edu hg19 10 70670106 70670106 + Missense_Mutation SNP C C A novel TCGA-A4-A5DU-01A-11D-A28G-10 TCGA-A4-A5DU-10A-01D-A28G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4423a137-3e9c-4910-bff6-0f282d79e89a 61c2e34f-6a63-434c-becd-e6537a9b7df9 . DDX50 NM_024045 exon3 c.C428A p.P143H ATTTTCCTATTTC . 39.0 11.0 72.0 0.0 . 65 . . . none . . PASS Atlas-SNP RBM20 282996 hgsc.bcm.edu hg19 10 112540726 112540726 + Missense_Mutation SNP T T C novel TCGA-A4-A5DU-01A-11D-A28G-10 TCGA-A4-A5DU-10A-01D-A28G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4423a137-3e9c-4910-bff6-0f282d79e89a 61c2e34f-6a63-434c-becd-e6537a9b7df9 . RBM20 NM_001134363 exon2 c.T359C p.L120P CAGTCCTGAACCA . 87.0 30.0 90.0 0.0 . 50 . . . none . . PASS Atlas-SNP INCENP 3619 hgsc.bcm.edu hg19 11 61897408 61897408 + Missense_Mutation SNP G G A novel TCGA-A4-A5DU-01A-11D-A28G-10 TCGA-A4-A5DU-10A-01D-A28G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4423a137-3e9c-4910-bff6-0f282d79e89a 61c2e34f-6a63-434c-becd-e6537a9b7df9 . INCENP NM_001040694 exon4 c.G409A p.A137T ACCATGGCATTGG . 72.0 29.0 77.0 0.0 . 122 . . . none . . PASS Atlas-SNP ARHGAP42 143872 hgsc.bcm.edu hg19 11 100641096 100641096 + Missense_Mutation SNP A A T novel TCGA-A4-A5DU-01A-11D-A28G-10 TCGA-A4-A5DU-10A-01D-A28G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4423a137-3e9c-4910-bff6-0f282d79e89a 61c2e34f-6a63-434c-becd-e6537a9b7df9 . ARHGAP42 NM_152432 exon2 c.A177T p.K59N GCAGAAATTTTCC . 47.0 22.0 61.0 0.0 . 32 . . . none . . PASS Atlas-SNP GXYLT1 283464 hgsc.bcm.edu hg19 12 42481670 42481670 + Missense_Mutation SNP C C T rs200973030 bycluster TCGA-A4-A5DU-01A-11D-A28G-10 TCGA-A4-A5DU-10A-01D-A28G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4423a137-3e9c-4910-bff6-0f282d79e89a 61c2e34f-6a63-434c-becd-e6537a9b7df9 Q8IXV1_HUMAN,NS,carcinoma,-1,2 GXYLT1 NM_173601 exon8 c.G1241A p.C414Y TTTCCACAGTATG . 40.0 3.0 50.0 1.0 . 47 . . . weak . . PASS Atlas-SNP SLC25A3 5250 hgsc.bcm.edu hg19 12 98995295 98995295 + Missense_Mutation SNP T T A novel TCGA-A4-A5DU-01A-11D-A28G-10 TCGA-A4-A5DU-10A-01D-A28G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4423a137-3e9c-4910-bff6-0f282d79e89a 61c2e34f-6a63-434c-becd-e6537a9b7df9 . SLC25A3 NM_005888 exon8 c.T1078A p.L360I CTTGGGTTAACTC . 76.0 48.0 72.0 0.0 . 95 . . . none . . PASS Atlas-SNP C12orf45 121053 hgsc.bcm.edu hg19 12 105385505 105385505 + Missense_Mutation SNP A A T novel TCGA-A4-A5DU-01A-11D-A28G-10 TCGA-A4-A5DU-10A-01D-A28G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4423a137-3e9c-4910-bff6-0f282d79e89a 61c2e34f-6a63-434c-becd-e6537a9b7df9 . C12orf45 NM_152318 exon3 c.A218T p.Q73L AGGTACAGACATT . 82.0 4.0 63.0 0.0 . 14 . . . none . . PASS Atlas-SNP RPGRIP1 57096 hgsc.bcm.edu hg19 14 21793036 21793036 + Silent SNP C C T novel TCGA-A4-A5DU-01A-11D-A28G-10 TCGA-A4-A5DU-10A-01D-A28G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4423a137-3e9c-4910-bff6-0f282d79e89a 61c2e34f-6a63-434c-becd-e6537a9b7df9 . RPGRIP1 NM_020366 exon14 c.C2022T p.P674P ACAGCCCCTCTAT . 126.0 46.0 109.0 0.0 . 213 . . . none . . PASS Atlas-SNP FAM98B 283742 hgsc.bcm.edu hg19 15 38776827 38776827 + Silent SNP T T A novel TCGA-A4-A5DU-01A-11D-A28G-10 TCGA-A4-A5DU-10A-01D-A28G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4423a137-3e9c-4910-bff6-0f282d79e89a 61c2e34f-6a63-434c-becd-e6537a9b7df9 FAM98B_ENST00000397609,NS,carcinoma,0,1 FAM98B NM_173611 exon8 c.T1269A p.G423G TGGTGGTGGTGGT . 27.0 4.0 21.0 0.0 . 53 . . . none . . PASS Atlas-SNP KIAA1199 57214 hgsc.bcm.edu hg19 15 81181040 81181040 + Splice_Site SNP A A T novel TCGA-A4-A5DU-01A-11D-A28G-10 TCGA-A4-A5DU-10A-01D-A28G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4423a137-3e9c-4910-bff6-0f282d79e89a 61c2e34f-6a63-434c-becd-e6537a9b7df9 . KIAA1199 NM_018689 exon8 c.869-2A>T . TCTGACAGGACAT . 52.0 27.0 57.0 0.0 . 118 . . . none . . PASS Atlas-SNP GLTPD2 388323 hgsc.bcm.edu hg19 17 4693110 4693110 + Missense_Mutation SNP A A G novel TCGA-A4-A5DU-01A-11D-A28G-10 TCGA-A4-A5DU-10A-01D-A28G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4423a137-3e9c-4910-bff6-0f282d79e89a 61c2e34f-6a63-434c-becd-e6537a9b7df9 . GLTPD2 NM_001014985 exon4 c.A395G p.K132R TCACCAAGGTGAC . 157.0 88.0 86.0 0.0 . 15 . . . none . . PASS Atlas-SNP CDC37 11140 hgsc.bcm.edu hg19 19 10506875 10506875 + Missense_Mutation SNP C C T novel TCGA-A4-A5DU-01A-11D-A28G-10 TCGA-A4-A5DU-10A-01D-A28G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4423a137-3e9c-4910-bff6-0f282d79e89a 61c2e34f-6a63-434c-becd-e6537a9b7df9 . CDC37 NM_007065 exon2 c.G107A p.R36Q TCCACCCGGGCCT . 141.0 69.0 128.0 0.0 . 32 . . . none . . PASS Atlas-SNP GATA5 140628 hgsc.bcm.edu hg19 20 61050059 61050059 + Silent SNP G G T novel TCGA-A4-A5DU-01A-11D-A28G-10 TCGA-A4-A5DU-10A-01D-A28G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4423a137-3e9c-4910-bff6-0f282d79e89a 61c2e34f-6a63-434c-becd-e6537a9b7df9 . GATA5 NM_080473 exon2 c.C519A p.T173T ACCGAAGGTGGGC . 83.0 5.0 11.0 0.0 . 22 . . . none . . PASS Atlas-SNP ACO2 50 hgsc.bcm.edu hg19 22 41911896 41911896 + Silent SNP T T C novel TCGA-A4-A5DU-01A-11D-A28G-10 TCGA-A4-A5DU-10A-01D-A28G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4423a137-3e9c-4910-bff6-0f282d79e89a 61c2e34f-6a63-434c-becd-e6537a9b7df9 . ACO2 NM_001098 exon6 c.T810C p.P270P CGGGCCTGGTGTA . 124.0 69.0 114.0 0.0 . 58 . . . none . . PASS Atlas-SNP DSPP 1834 hgsc.bcm.edu hg19 4 88537224 88537232 + In_Frame_Del DEL ACAGCAGCA ACAGCAGCA - novel TCGA-A4-A5DU-01A-11D-A28G-10 TCGA-A4-A5DU-10A-01D-A28G-10 ACAGCAGCA ACAGCAGCA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4423a137-3e9c-4910-bff6-0f282d79e89a 61c2e34f-6a63-434c-becd-e6537a9b7df9 . DSPP NM_014208 exon5 c.3409_3417del p.1137_1139del . . 250.0 114.0 190.0 0.0 . 174 . 0.456 0 none . . PASS Atlas-INDEL ZNF721 170960 hgsc.bcm.edu hg19 4 436799 436801 + In_Frame_Del DEL GAG GAG - novel TCGA-A4-A5DU-01A-11D-A28G-10 TCGA-A4-A5DU-10A-01D-A28G-10 GAG GAG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4423a137-3e9c-4910-bff6-0f282d79e89a 61c2e34f-6a63-434c-becd-e6537a9b7df9 . ZNF721 NM_133474 exon3 c.1456_1458del p.486_486del . . 80.0 23.0 81.0 0.0 . 205 . 0.2875 0 none . . PASS Atlas-Indel,Pindel DISC1 27185 hgsc.bcm.edu hg19 1 231931003 231931003 + Frame_Shift_Del DEL A A - novel TCGA-A4-A5DU-01A-11D-A28G-10 TCGA-A4-A5DU-10A-01D-A28G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4423a137-3e9c-4910-bff6-0f282d79e89a 61c2e34f-6a63-434c-becd-e6537a9b7df9 . DISC1 NM_001164537 exon8 c.1745delT p.I582fs . . 59.0 27.0 59.0 0.0 . 207 . 0.457627 0 none . . PASS Atlas-Indel,Pindel