Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
H6PD	9563	hgsc.bcm.edu	hg19	1	9324818	9324818	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	H6PD	NM_004285	exon5	c.A2266G	p.T756A	ATCACCACGCTGG	.	259.0	61.0	183.0	0.0	.	71	.	.	.	none	.	.	PASS	Atlas-SNP
SCP2	6342	hgsc.bcm.edu	hg19	1	53416459	53416459	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	SCP2	NM_002979	exon4	c.C232T	p.H78Y	ATCTATCACAGTT	.	118.0	25.0	110.0	0.0	.	44	.	.	.	none	.	.	PASS	Atlas-SNP
PODN	127435	hgsc.bcm.edu	hg19	1	53535630	53535630	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	PODN	NM_153703	exon2	c.G247T	p.G83C	AGTGGCGGCCACA	.	50.0	23.0	28.0	0.0	.	86	.	.	.	none	.	.	PASS	Atlas-SNP
NEXN	91624	hgsc.bcm.edu	hg19	1	78395127	78395127	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	NEXN	NM_144573	exon9	c.G991C	p.E331Q	GCAGAAGAAGAAG	.	98.0	28.0	93.0	0.0	.	77	.	.	.	none	.	.	PASS	Atlas-SNP
SLC6A17	388662	hgsc.bcm.edu	hg19	1	110734657	110734657	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	SLC6A17	NM_001010898	exon7	c.G928A	p.G310S	GCCTTGGGCCTGG	.	200.0	46.0	142.0	0.0	.	86	.	.	.	none	.	.	PASS	Atlas-SNP
SLC16A4	9122	hgsc.bcm.edu	hg19	1	110921516	110921516	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	SLC16A4	NM_004696	exon6	c.G989T	p.G330V	TCAATCCCCAGTG	.	157.0	47.0	163.0	0.0	.	47	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF687	57592	hgsc.bcm.edu	hg19	1	151261140	151261140	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	ZNF687	NM_020832	exon3	c.T2252G	p.L751R	CCCATCTCCGGGA	.	146.0	36.0	130.0	0.0	.	94	.	.	.	none	.	.	PASS	Atlas-SNP
DCST1	149095	hgsc.bcm.edu	hg19	1	155015935	155015935	+	Silent	SNP	G	G	T	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	DCST1	NM_152494	exon10	c.G1122T	p.L374L	GGCCCTGGGGCTG	.	70.0	21.0	64.0	0.0	.	69	.	.	.	none	.	.	PASS	Atlas-SNP
ADCY10	55811	hgsc.bcm.edu	hg19	1	167825476	167825476	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	ADCY10	NM_018417	exon17	c.G2098A	p.V700I	GCTGTACTGCACC	.	284.0	89.0	240.0	0.0	.	175	.	.	.	none	.	.	PASS	Atlas-SNP
KCNT2	343450	hgsc.bcm.edu	hg19	1	196227503	196227503	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	KCNT2	NM_198503	exon26	c.G3032A	p.R1011Q	TTTCTCCGCAGCA	.	165.0	8.0	168.0	0.0	.	243	.	.	.	none	.	.	PASS	Atlas-SNP
CHI3L1	1116	hgsc.bcm.edu	hg19	1	203151959	203151959	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	CHI3L1	NM_001276	exon6	c.A487G	p.K163E	CTTCCTTTATAAA	.	108.0	29.0	82.0	0.0	.	51	.	.	.	none	.	.	PASS	Atlas-SNP
APOB	338	hgsc.bcm.edu	hg19	2	21227463	21227463	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	APOB	NM_000384	exon27	c.A11873G	p.Y3958C	TCTTCATATTCTG	.	159.0	39.0	138.0	0.0	.	761	.	.	.	none	.	.	PASS	Atlas-SNP
C2orf71	388939	hgsc.bcm.edu	hg19	2	29295663	29295663	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	C2orf71	NM_001029883	exon1	c.C1465T	p.P489S	CCTCTGGGCTGCT	.	254.0	80.0	208.0	0.0	.	146	.	.	.	none	.	.	PASS	Atlas-SNP
LRP2	4036	hgsc.bcm.edu	hg19	2	170012842	170012842	+	Silent	SNP	G	G	T	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	LRP2	NM_004525	exon65	c.C12093A	p.V4031V	AGCACAGACACAC	.	174.0	40.0	191.0	0.0	.	751	.	.	.	none	.	.	PASS	Atlas-SNP
ITPR1	3708	hgsc.bcm.edu	hg19	3	4878618	4878618	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	ITPR1	NM_001168272	exon60	c.A8144C	p.Q2715P	AGGATCAGGTAAA	.	59.0	13.0	39.0	0.0	.	659	.	.	.	none	.	.	PASS	Atlas-SNP
SH3BP5	9467	hgsc.bcm.edu	hg19	3	15298471	15298471	+	Silent	SNP	G	G	A	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	SH3BP5	NM_004844	exon8	c.C1039T	p.L347L	GATCCAGGCTGCC	.	221.0	46.0	150.0	0.0	.	32	.	.	.	none	.	.	PASS	Atlas-SNP
ANKRD28	23243	hgsc.bcm.edu	hg19	3	15765925	15765925	+	Silent	SNP	G	G	A	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	ANKRD28	NM_015199	exon7	c.C657T	p.I219I	TACGCTGATCATT	.	134.0	18.0	91.0	0.0	.	121	.	.	.	none	.	.	PASS	Atlas-SNP
SLC22A13	9390	hgsc.bcm.edu	hg19	3	38316203	38316203	+	Silent	SNP	T	T	C	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	SLC22A13	NM_004256	exon3	c.T591C	p.A197A	CTTTGCTGTGGCT	.	189.0	71.0	115.0	0.0	.	42	.	.	.	none	.	.	PASS	Atlas-SNP
VIPR1	7433	hgsc.bcm.edu	hg19	3	42577629	42577629	+	Silent	SNP	C	C	T	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	VIPR1	NM_004624	exon13	c.C1230T	p.G410G	GCAGGGCGTCCTG	.	121.0	51.0	65.0	0.0	.	45	.	.	.	none	.	.	PASS	Atlas-SNP
ROPN1	54763	hgsc.bcm.edu	hg19	3	123695737	123695737	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	ROPN1	NM_017578	exon4	c.G208C	p.E70Q	ACAGCTCAGGTGT	.	235.0	40.0	187.0	0.0	.	20	.	.	.	none	.	.	PASS	Atlas-SNP
MME	4311	hgsc.bcm.edu	hg19	3	154855893	154855893	+	Silent	SNP	T	T	A	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	MME	NM_007287	exon9	c.T723A	p.A241A	GCAGGCTTGTACA	.	161.0	70.0	128.0	0.0	.	133	.	.	.	none	.	.	PASS	Atlas-SNP
GPR125	166647	hgsc.bcm.edu	hg19	4	22436990	22436990	+	Missense_Mutation	SNP	C	C	G	rs146147575		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	GPR125	NM_145290	exon10	c.G1387C	p.V463L	CTGCCACAAATAT	.	203.0	47.0	148.0	0.0	.	118	.	.	.	weak	C|1.000;G|0.000	0.000	PASS	Atlas-SNP
TMEM156	80008	hgsc.bcm.edu	hg19	4	38988027	38988027	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	TMEM156	NM_024943	exon5	c.A752T	p.K251I	GTAGGTTTGTCTC	.	53.0	10.0	71.0	0.0	.	31	.	.	.	none	.	.	PASS	Atlas-SNP
TIGD4	201798	hgsc.bcm.edu	hg19	4	153691183	153691183	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	TIGD4	NM_145720	exon2	c.G974A	p.S325N	TTAAGGCTTTTAA	.	140.0	32.0	130.0	0.0	.	53	.	.	.	none	.	.	PASS	Atlas-SNP
MAST4	375449	hgsc.bcm.edu	hg19	5	66449317	66449317	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	MAST4	NM_001164664	exon26	c.C3557A	p.A1186E	GCCAGGCAGGACT	.	71.0	14.0	55.0	0.0	.	218	.	.	.	none	.	.	PASS	Atlas-SNP
MAST4	375449	hgsc.bcm.edu	hg19	5	66449318	66449318	+	Silent	SNP	A	A	T	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	MAST4	NM_001164664	exon26	c.A3558T	p.A1186A	CCAGGCAGGACTG	.	73.0	14.0	56.0	0.0	.	218	.	.	.	none	.	.	PASS	Atlas-SNP
VCAN	1462	hgsc.bcm.edu	hg19	5	82808191	82808191	+	Silent	SNP	A	A	C	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	VCAN	NM_004385	exon6	c.A1018C	p.R340R	GATAGCAGATTTG	.	109.0	34.0	114.0	0.0	.	498	.	.	.	none	.	.	PASS	Atlas-SNP
HUS1B	135458	hgsc.bcm.edu	hg19	6	656335	656335	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	HUS1B	NM_148959	exon1	c.T610A	p.F204I	TTTTAAAATAACT	.	103.0	27.0	101.0	0.0	.	26	.	.	.	none	.	.	PASS	Atlas-SNP
RHAG	6005	hgsc.bcm.edu	hg19	6	49586991	49586991	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	RHAG	NM_000324	exon2	c.G242A	p.G81D	TTGATACCCACAC	.	130.0	30.0	98.0	0.0	.	85	.	.	.	none	.	.	PASS	Atlas-SNP
CD164	8763	hgsc.bcm.edu	hg19	6	109690201	109690201	+	Silent	SNP	C	C	T	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	CD164	NM_006016	exon6	c.G447A	p.V149V	TGGAGTCACAGTG	.	177.0	39.0	194.0	0.0	.	10	.	.	.	none	.	.	PASS	Atlas-SNP
SNX9	51429	hgsc.bcm.edu	hg19	6	158330822	158330822	+	Silent	SNP	T	T	G	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	SNX9	NM_016224	exon8	c.T831G	p.T277T	ACCTACTGTAAGT	.	104.0	26.0	85.0	0.0	.	43	.	.	.	none	.	.	PASS	Atlas-SNP
MICALL2	79778	hgsc.bcm.edu	hg19	7	1478499	1478499	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	MICALL2	NM_182924	exon10	c.A2099C	p.K700T	TGAGGTTTCTTCT	.	43.0	13.0	33.0	0.0	.	63	.	.	.	none	.	.	PASS	Atlas-SNP
HIBADH	11112	hgsc.bcm.edu	hg19	7	27582616	27582616	+	Silent	SNP	C	C	G	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	HIBADH	NM_152740	exon5	c.G588C	p.V196V	GTACACCACGTTG	.	142.0	34.0	118.0	0.0	.	28	.	.	.	none	.	.	PASS	Atlas-SNP
PPP1R3A	5506	hgsc.bcm.edu	hg19	7	113519562	113519562	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	PPP1R3A	NM_002711	exon4	c.A1585G	p.K529E	TTTGTTTTTCATT	.	90.0	11.0	96.0	0.0	.	317	.	.	.	none	.	.	PASS	Atlas-SNP
DEFB136	613210	hgsc.bcm.edu	hg19	8	11831570	11831570	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	DEFB136	NM_001033018	exon2	c.C113T	p.A38V	CATACGGCTTTCT	.	182.0	50.0	172.0	0.0	.	16	.	.	.	none	.	.	PASS	Atlas-SNP
SCARA3	51435	hgsc.bcm.edu	hg19	8	27516084	27516084	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	SCARA3	NM_182826	exon5	c.C397T	p.Q133X	AAACTGCAGGAGG	.	93.0	7.0	78.0	0.0	.	93	.	.	.	none	.	.	PASS	Atlas-SNP
HNF4G	3174	hgsc.bcm.edu	hg19	8	76463728	76463728	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	HNF4G	NM_004133	exon4	c.A458G	p.Q153R	CTCGCCAGGTACC	.	67.0	10.0	65.0	0.0	.	111	.	.	.	none	.	.	PASS	Atlas-SNP
CA1	759	hgsc.bcm.edu	hg19	8	86250502	86250502	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	CA1	NM_001164830	exon2	c.G214A	p.E72K	TGTCCTCAAAATT	.	100.0	8.0	120.0	0.0	.	41	.	.	.	none	.	.	PASS	Atlas-SNP
RGS22	26166	hgsc.bcm.edu	hg19	8	101076121	101076121	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	RGS22	NM_015668	exon8	c.G875C	p.R292T	TATACTCTCAGAA	.	62.0	7.0	64.0	0.0	.	319	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF572	137209	hgsc.bcm.edu	hg19	8	125988719	125988719	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	ZNF572	NM_152412	exon3	c.A209C	p.E70A	CAAAAGAAATGCC	.	54.0	13.0	68.0	0.0	.	82	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF251	90987	hgsc.bcm.edu	hg19	8	145947050	145947050	+	Silent	SNP	A	A	T	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	ZNF251	NM_138367	exon5	c.T1995A	p.I665I	TTGGAAAATCTTC	.	90.0	28.0	96.0	0.0	.	80	.	.	.	none	.	.	PASS	Atlas-SNP
BAAT	570	hgsc.bcm.edu	hg19	9	104125253	104125253	+	Silent	SNP	T	T	C	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	BAAT	NM_001127610	exon4	c.A714G	p.V238V	AATCTGTACTCCT	.	59.0	16.0	62.0	0.0	.	52	.	.	.	none	.	.	PASS	Atlas-SNP
GPR107	57720	hgsc.bcm.edu	hg19	9	132845879	132845879	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	GPR107	NM_001136557	exon6	c.A562G	p.K188E	GATTCAAAGGTAA	.	223.0	11.0	243.0	0.0	.	30	.	.	.	none	.	.	PASS	Atlas-SNP
NUDT13	25961	hgsc.bcm.edu	hg19	10	74884990	74884990	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	NUDT13	NM_015901	exon6	c.T580G	p.Y194D	ATAATCTATTATC	.	101.0	25.0	115.0	0.0	.	16	.	.	.	none	.	.	PASS	Atlas-SNP
MAT1A	4143	hgsc.bcm.edu	hg19	10	82039973	82039973	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	MAT1A	NM_000429	exon5	c.C505A	p.R169S	CGGAGCGCCTGAG	.	86.0	7.0	76.0	0.0	.	52	.	.	.	none	.	.	PASS	Atlas-SNP
NRG3	10718	hgsc.bcm.edu	hg19	10	83635455	83635455	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	NRG3	NM_001165972	exon1	c.C359G	p.S120C	CCAGCTCTTTCCC	.	113.0	29.0	95.0	0.0	.	301	.	.	.	none	.	.	PASS	Atlas-SNP
BMPR1A	657	hgsc.bcm.edu	hg19	10	88681453	88681453	+	Splice_Site	SNP	G	G	A	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	BMPR1A	NM_004329	exon11	c.1342+1G>A	.	CAGGAGGTGGGAG	.	155.0	44.0	163.0	0.0	.	118	.	.	.	none	.	.	PASS	Atlas-SNP
CDHR5	53841	hgsc.bcm.edu	hg19	11	621148	621148	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	CDHR5	NM_031264	exon7	c.A721G	p.T241A	AGAAGGTGCAGGG	.	154.0	34.0	112.0	0.0	.	77	.	.	.	none	.	.	PASS	Atlas-SNP
MUC2	4583	hgsc.bcm.edu	hg19	11	1093271	1093271	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	MUC2_ENST00000441003,NS,carcinoma,-1,4	MUC2	NM_002457	exon30	c.C5090G	p.T1697R	CCCCAACATCGAC	.	70.0	4.0	54.0	0.0	.	614	.	.	.	none	.	.	PASS	Atlas-SNP
OR52D1	390066	hgsc.bcm.edu	hg19	11	5510196	5510196	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	OR52D1	NM_001005163	exon1	c.T260C	p.I87T	TGGCCATTTTGTG	.	419.0	115.0	413.0	1.0	.	66	.	.	.	none	.	.	PASS	Atlas-SNP
SIK3	23387	hgsc.bcm.edu	hg19	11	116741113	116741113	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	SIK3	NM_025164	exon14	c.T1568C	p.V523A	GCTGGCACTGCCT	.	114.0	25.0	88.0	0.0	.	112	.	.	.	none	.	.	PASS	Atlas-SNP
LRRK2	120892	hgsc.bcm.edu	hg19	12	40713882	40713882	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	LRRK2	NM_198578	exon34	c.A4920T	p.K1640N	AAGGAAATTTCCA	.	54.0	13.0	52.0	0.0	.	763	.	.	.	none	.	.	PASS	Atlas-SNP
LRRK2	120892	hgsc.bcm.edu	hg19	12	40745358	40745358	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	LRRK2	NM_198578	exon44	c.T6399A	p.N2133K	TTTGAATTCAGCT	.	56.0	6.0	74.0	0.0	.	763	.	.	.	none	.	.	PASS	Atlas-SNP
KRT79	338785	hgsc.bcm.edu	hg19	12	53225246	53225246	+	Silent	SNP	C	C	A	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	KRT79	NM_175834	exon2	c.G642T	p.G214G	CAGCCTCCCCCGC	.	111.0	27.0	101.0	0.0	.	78	.	.	.	none	.	.	PASS	Atlas-SNP
GPR182	11318	hgsc.bcm.edu	hg19	12	57389791	57389791	+	Silent	SNP	C	C	G	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	GPR182	NM_007264	exon2	c.C798G	p.V266V	GGCCGTCTTTGTC	.	67.0	18.0	46.0	0.0	.	35	.	.	.	none	.	.	PASS	Atlas-SNP
IFT88	8100	hgsc.bcm.edu	hg19	13	21163994	21163994	+	Silent	SNP	T	T	C	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	IFT88	NM_175605	exon6	c.T225C	p.A75A	TATAGCTACTGGA	.	56.0	6.0	61.0	0.0	.	83	.	.	.	none	.	.	PASS	Atlas-SNP
USP12	219333	hgsc.bcm.edu	hg19	13	27664060	27664060	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	USP12	NM_182488	exon6	c.T694A	p.Y232N	CACAGTAATACTT	.	115.0	39.0	110.0	0.0	.	35	.	.	.	none	.	.	PASS	Atlas-SNP
DIAPH3	81624	hgsc.bcm.edu	hg19	13	60686191	60686191	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	DIAPH3	NM_001042517	exon3	c.A343G	p.K115E	GTGGCTTTGGAAA	.	88.0	21.0	136.0	0.0	.	139	.	.	.	none	.	.	PASS	Atlas-SNP
AJUBA	84962	hgsc.bcm.edu	hg19	14	23444254	23444254	+	Silent	SNP	G	G	A	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	.	NM_032876	exon5	c.C1299T	p.N433N	GCACTTGTTGCAA	.	75.0	23.0	58.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
NRDE2	55051	hgsc.bcm.edu	hg19	14	90769186	90769186	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	.	NM_017970	exon6	c.G1289A	p.S430N	AAGGTACTAAACT	.	97.0	16.0	87.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
THBS1	7057	hgsc.bcm.edu	hg19	15	39886356	39886356	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	THBS1	NM_003246	exon20	c.C3324A	p.Y1108X	CGCCTACAGATGG	.	194.0	47.0	192.0	0.0	.	106	.	.	.	none	.	.	PASS	Atlas-SNP
MYO9A	4649	hgsc.bcm.edu	hg19	15	72190908	72190908	+	Silent	SNP	A	A	G	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	MYO9A	NM_006901	exon25	c.T3936C	p.P1312P	GCCTTCAGGCACC	.	120.0	41.0	133.0	0.0	.	203	.	.	.	none	.	.	PASS	Atlas-SNP
NUBP2	10101	hgsc.bcm.edu	hg19	16	1837701	1837701	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	NUBP2	NM_012225	exon4	c.G358T	p.D120Y	GTGTCCGACGTGG	.	105.0	33.0	42.0	0.0	.	25	.	.	.	none	.	.	PASS	Atlas-SNP
HMOX2	3163	hgsc.bcm.edu	hg19	16	4557884	4557884	+	Silent	SNP	G	G	T	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	HMOX2	NM_001127205	exon4	c.G375T	p.V125V	GCAGGTGCAGTGC	.	254.0	39.0	126.0	0.0	.	22	.	.	.	none	.	.	PASS	Atlas-SNP
SMG1	23049	hgsc.bcm.edu	hg19	16	18861438	18861438	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	SMG1	NM_015092	exon35	c.A5294G	p.D1765G	TCCTCATCTAAAG	.	298.0	99.0	218.0	0.0	.	401	.	.	.	none	.	.	PASS	Atlas-SNP
ACSM2B	348158	hgsc.bcm.edu	hg19	16	20559488	20559488	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	ACSM2B	NM_182617	exon9	c.C994T	p.Q332X	AGTTCTGTAGATG	.	146.0	39.0	109.0	0.0	.	121	.	.	.	none	.	.	PASS	Atlas-SNP
BANP	54971	hgsc.bcm.edu	hg19	16	88105728	88105728	+	Silent	SNP	G	G	A	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	BANP	NM_001173543	exon13	c.G1398A	p.A466A	GGCGGCGGGCGTG	.	7.0	6.0	1.0	0.0	.	67	.	.	.	none	.	.	PASS	Atlas-SNP
MIEN1	84299	hgsc.bcm.edu	hg19	17	37886504	37886504	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	.	NM_032339	exon2	c.A130G	p.S44G	CAGCACTGGCCAG	.	64.0	18.0	59.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
SMCHD1	23347	hgsc.bcm.edu	hg19	18	2703754	2703754	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	SMCHD1	NM_015295	exon13	c.A1712C	p.D571A	AGTATGATAAACA	.	123.0	28.0	152.0	0.0	.	88	.	.	.	none	.	.	PASS	Atlas-SNP
PIK3C3	5289	hgsc.bcm.edu	hg19	18	39542509	39542509	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	PIK3C3	NM_002647	exon3	c.C313A	p.Q105K	AATGCCCAAGTGG	.	139.0	7.0	129.0	0.0	.	138	.	.	.	none	.	.	PASS	Atlas-SNP
MYO1F	4542	hgsc.bcm.edu	hg19	19	8642191	8642191	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	MYO1F	NM_012335	exon1	c.G3C	p.M1I	ACTTACCATGGTG	.	80.0	24.0	70.0	0.0	.	128	.	.	.	none	.	.	PASS	Atlas-SNP
GAPDHS	26330	hgsc.bcm.edu	hg19	19	36029207	36029207	+	Splice_Site	SNP	A	A	C	rs111871741	bycluster;alternate_allele	TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	GAPDHS	NM_014364	exon3	c.246-2A>C	.	CTGGCCAGATTTG	.	147.0	34.0	129.0	0.0	.	34	.	.	.	alt	.	.	PASS	Atlas-SNP
WDR87	83889	hgsc.bcm.edu	hg19	19	38377329	38377329	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	WDR87	NM_031951	exon6	c.A6865G	p.K2289E	TCTTCTTCTTCTT	.	88.0	20.0	78.0	0.0	.	191	.	.	.	none	.	.	PASS	Atlas-SNP
TMEM74B	55321	hgsc.bcm.edu	hg19	20	1161648	1161648	+	Silent	SNP	G	G	A	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	.	NM_018354	exon2	c.C615T	p.Y205Y	CCGGCGGTACAGC	.	86.0	18.0	78.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
MYBL2	4605	hgsc.bcm.edu	hg19	20	42310472	42310472	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	MYBL2	NM_002466	exon3	c.A163G	p.K55E	GACTGGAAGTTCC	.	144.0	41.0	95.0	0.0	.	82	.	.	.	none	.	.	PASS	Atlas-SNP
SGSM3	27352	hgsc.bcm.edu	hg19	22	40800334	40800334	+	Silent	SNP	C	C	T	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	SGSM3	NM_015705	exon5	c.C241T	p.L81L	GCCCACCTGGAGT	.	90.0	24.0	83.0	0.0	.	48	.	.	.	none	.	.	PASS	Atlas-SNP
MKL1	57591	hgsc.bcm.edu	hg19	22	40825749	40825749	+	Silent	SNP	G	G	A	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	MKL1,brain,glioma,0,1	MKL1	NM_020831	exon7	c.C162T	p.L54L	GGCCTGGAGGGAT	.	125.0	31.0	101.0	0.0	.	69	.	.	.	none	.	.	PASS	Atlas-SNP
KDM6A	7403	hgsc.bcm.edu	hg19	X	44922715	44922715	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	KDM6A	NM_021140	exon16	c.G1576T	p.G526W	CCTAATGGGCCAA	.	28.0	18.0	20.0	0.0	.	274	.	.	.	none	.	.	PASS	Atlas-SNP
KDM6A	7403	hgsc.bcm.edu	hg19	X	44922716	44922716	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	KDM6A	NM_021140	exon16	c.G1577A	p.G526E	CTAATGGGCCAAC	.	28.0	18.0	20.0	0.0	.	274	.	.	.	none	.	.	PASS	Atlas-SNP
ND5	0	hgsc.bcm.edu	hg19	MT	13726	13726	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	.	ENST00000361567	exon1	c.G1390A	p.A464T	CTATTCGCAGGAT	.	67.0	14.0	5.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
TMEM132B	114795	hgsc.bcm.edu	hg19	12	126138829	126138830	+	In_Frame_Ins	INS	-	-	CAA	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	TMEM132B	NM_052907	exon9	c.2810_2811insCAA	p.G937delinsGN	.	.	171.0	27.0	139.0	0.0	.	207	.	0.157895	0	none	.	.	PASS	Atlas-Indel,Pindel
EXPH5	23086	hgsc.bcm.edu	hg19	11	108381937	108381941	+	Frame_Shift_Del	DEL	CTTCT	CTTCT	-	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	CTTCT	CTTCT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	EXPH5	NM_015065	exon6	c.4294_4298del	p.1432_1433del	.	.	123.0	26.0	146.0	0.0	.	193	.	0.211382	0	none	.	.	PASS	Atlas-Indel,Pindel
NIPBL	25836	hgsc.bcm.edu	hg19	5	37017244	37017247	+	Frame_Shift_Del	DEL	ATAG	ATAG	-	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	ATAG	ATAG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	NIPBL	NM_133433	exon24	c.4899_4902del	p.1633_1634del	.	.	173.0	76.0	141.0	0.0	.	513	.	0.439306	0	none	.	.	PASS	Atlas-Indel,Pindel
LOC100132247	0	hgsc.bcm.edu	hg19	16	22545744	22545755	+	In_Frame_Del	DEL	TCCACCCTCAGC	TCCACCCTCAGC	-	rs71921978		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	TCCACCCTCAGC	TCCACCCTCAGC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	.	NM_001135865	exon7	c.1439_1450del	p.480_484del	.	.	74.0	20.0	39.0	0.0	.	.	.	0.27027	0	weak	.	.	PASS	Atlas-INDEL
RAB11FIP1	80223	hgsc.bcm.edu	hg19	8	37730035	37730036	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	RAB11FIP1	NM_001002814	exon4	c.2285_2286insA	p.S762fs	.	.	128.0	27.0	91.0	0.0	.	105	.	0.210938	0	none	.	.	PASS	Atlas-Indel,Pindel
CLK3	1198	hgsc.bcm.edu	hg19	15	74912367	74912371	+	Frame_Shift_Del	DEL	ACCAG	ACCAG	-	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	ACCAG	ACCAG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	CLK3	NM_001130028	exon3	c.613_617del	p.205_206del	.	.	176.0	41.0	155.0	0.0	.	78	.	0.232955	0	none	.	.	PASS	Atlas-Indel,Pindel
WLS	79971	hgsc.bcm.edu	hg19	1	68697907	68697910	+	Frame_Shift_Del	DEL	TTTG	TTTG	-	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	TTTG	TTTG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	WLS	NM_001002292	exon1	c.74_77del	p.25_26del	.	.	131.0	34.0	135.0	0.0	.	97	.	0.259542	0	none	.	.	PASS	Atlas-Indel,Pindel
CYP3A43	64816	hgsc.bcm.edu	hg19	7	99434139	99434139	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	CYP3A43	NM_057095	exon2	c.134delC	p.P45fs	.	.	88.0	21.0	103.0	0.0	.	52	.	0.238636	0	none	.	.	PASS	Atlas-Indel,Pindel
BRD8	10902	hgsc.bcm.edu	hg19	5	137506838	137506838	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	BRD8	NM_139199	exon5	c.249delT	p.G83fs	.	.	134.0	19.0	114.0	0.0	.	192	.	0.141791	0	none	.	.	PASS	Atlas-Indel,Pindel
TIMELESS	8914	hgsc.bcm.edu	hg19	12	56827702	56827703	+	Frame_Shift_Ins	INS	-	-	CACG	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	TIMELESS	NM_003920	exon3	c.106_107insCGTG	p.K36fs	.	.	156.0	30.0	152.0	0.0	.	107	.	0.192308	0	none	.	.	PASS	Atlas-Indel,Pindel
HECW1	23072	hgsc.bcm.edu	hg19	7	43508701	43508701	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	HECW1	NM_015052	exon16	c.3095delG	p.G1032fs	.	.	110.0	36.0	77.0	0.0	.	540	.	0.327273	0	none	.	.	PASS	Atlas-Indel,Pindel
KCNK9	51305	hgsc.bcm.edu	hg19	8	140631226	140631231	+	In_Frame_Del	DEL	TGTTCA	TGTTCA	-	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	TGTTCA	TGTTCA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	KCNK9	NM_016601	exon2	c.396_401del	p.132_134del	.	.	211.0	27.0	190.0	0.0	.	100	.	0.127962	0	none	.	.	PASS	Atlas-Indel,Pindel
FAM65C	140876	hgsc.bcm.edu	hg19	20	49206309	49206309	+	Splice_Site	DEL	G	G	-	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	FAM65C	NM_080829	exon21	c.2566-2C>-	.	.	.	113.0	22.0	107.0	0.0	.	87	.	0.19469	0	none	.	.	PASS	Atlas-INDEL
GIGYF2	26058	hgsc.bcm.edu	hg19	2	233676027	233676029	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	CTT	CTT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	GIGYF2	NM_001103147	exon19	c.2034_2036del	p.678_679del	.	.	167.0	47.0	156.0	0.0	.	288	.	0.281437	0	none	.	.	PASS	Atlas-Indel,Pindel
TXNDC15	79770	hgsc.bcm.edu	hg19	5	134223683	134223688	+	In_Frame_Del	DEL	TGGCGC	TGGCGC	-	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	TGGCGC	TGGCGC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	TXNDC15	NM_024715	exon2	c.401_406del	p.134_136del	.	.	184.0	27.0	112.0	0.0	.	37	.	0.146739	0	none	.	.	PASS	Atlas-Indel,Pindel
DECR1	1666	hgsc.bcm.edu	hg19	8	91029497	91029498	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	DECR1	NM_001359	exon2	c.215_216insA	p.G72fs	.	.	127.0	44.0	102.0	0.0	.	37	.	0.346457	0	none	.	.	PASS	Atlas-Indel,Pindel
ZNF101	94039	hgsc.bcm.edu	hg19	19	19790040	19790040	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	ZNF101	NM_033204	exon4	c.241delG	p.E81fs	.	.	150.0	39.0	136.0	0.0	.	43	.	0.26	0	none	.	.	PASS	Atlas-Indel,Pindel
USP5	8078	hgsc.bcm.edu	hg19	12	6974373	6974374	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	USP5	NM_001098536	exon19	c.2443_2444del	p.815_815del	.	.	182.0	32.0	171.0	0.0	.	124	.	0.175824	0	none	.	.	PASS	Atlas-Indel,Pindel
HSPA4L	22824	hgsc.bcm.edu	hg19	4	128726257	128726266	+	Frame_Shift_Del	DEL	GAAATTGTAG	GAAATTGTAG	-	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	GAAATTGTAG	GAAATTGTAG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	HSPA4L	NM_014278	exon9	c.1014_1023del	p.338_341del	.	.	134.0	14.0	175.0	0.0	.	82	.	0.104	.	none	.	.	PASS	Pindel