Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq TVarRat NVarRat dbSNP_Strength dbSNP_AF dbSNP_PopFreq Confidence Algorithm RERE 473 hgsc.bcm.edu hg19 1 8674682 8674682 + Missense_Mutation SNP A A T novel TCGA-A4-7996-01A-11D-2201-08 TCGA-A4-7996-10A-01D-2201-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cf8d4b0-1532-48a1-ac95-242f1fc0a867 5b059d3b-661d-4e07-b668-c140b421ade8 . RERE NM_012102 exon5 c.T460A p.S154T GCAGAGAGCATGC . 183.0 57.0 217.0 0.0 . 129 . . . none . . PASS Atlas-SNP TNFRSF1B 7133 hgsc.bcm.edu hg19 1 12266986 12266986 + Missense_Mutation SNP C C T novel TCGA-A4-7996-01A-11D-2201-08 TCGA-A4-7996-10A-01D-2201-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cf8d4b0-1532-48a1-ac95-242f1fc0a867 5b059d3b-661d-4e07-b668-c140b421ade8 . TNFRSF1B NM_001066 exon10 c.C1295T p.S432L TTCGGTCACAGCT . 116.0 34.0 137.0 0.0 . 28 . . . none . . PASS Atlas-SNP AGMAT 79814 hgsc.bcm.edu hg19 1 15909721 15909721 + Missense_Mutation SNP T T A novel TCGA-A4-7996-01A-11D-2201-08 TCGA-A4-7996-10A-01D-2201-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cf8d4b0-1532-48a1-ac95-242f1fc0a867 5b059d3b-661d-4e07-b668-c140b421ade8 . AGMAT NM_024758 exon2 c.A442T p.I148F CTACAATTTTCTC . 59.0 24.0 74.0 0.0 . 25 . . . none . . PASS Atlas-SNP SLC5A9 200010 hgsc.bcm.edu hg19 1 48713171 48713171 + Missense_Mutation SNP C C T novel TCGA-A4-7996-01A-11D-2201-08 TCGA-A4-7996-10A-01D-2201-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cf8d4b0-1532-48a1-ac95-242f1fc0a867 5b059d3b-661d-4e07-b668-c140b421ade8 . SLC5A9 NM_001135181 exon15 c.C2077T p.L693F GCTGTCCTTTTGC . 131.0 36.0 143.0 0.0 . 82 . . . none . . PASS Atlas-SNP ZYG11B 79699 hgsc.bcm.edu hg19 1 53287171 53287171 + Missense_Mutation SNP A A G novel TCGA-A4-7996-01A-11D-2201-08 TCGA-A4-7996-10A-01D-2201-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cf8d4b0-1532-48a1-ac95-242f1fc0a867 5b059d3b-661d-4e07-b668-c140b421ade8 . ZYG11B NM_024646 exon14 c.A2105G p.K702R ACATCAAAGATCA . 84.0 18.0 83.0 0.0 . 61 . . . none . . PASS Atlas-SNP USP24 23358 hgsc.bcm.edu hg19 1 55612677 55612677 + Silent SNP A A G novel TCGA-A4-7996-01A-11D-2201-08 TCGA-A4-7996-10A-01D-2201-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cf8d4b0-1532-48a1-ac95-242f1fc0a867 5b059d3b-661d-4e07-b668-c140b421ade8 . USP24 NM_015306 exon19 c.T2175C p.Y725Y GCCCAGATACAGA . 54.0 20.0 55.0 0.0 . 323 . . . none . . PASS Atlas-SNP INADL 10207 hgsc.bcm.edu hg19 1 62365295 62365295 + Missense_Mutation SNP C C T novel TCGA-A4-7996-01A-11D-2201-08 TCGA-A4-7996-10A-01D-2201-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cf8d4b0-1532-48a1-ac95-242f1fc0a867 5b059d3b-661d-4e07-b668-c140b421ade8 . INADL NM_176877 exon23 c.C3172T p.P1058S GAAACTCCAAATT . 256.0 78.0 263.0 0.0 . 179 . . . none . . PASS Atlas-SNP TCHH 7062 hgsc.bcm.edu hg19 1 152082279 152082279 + Silent SNP C C T novel TCGA-A4-7996-01A-11D-2201-08 TCGA-A4-7996-10A-01D-2201-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cf8d4b0-1532-48a1-ac95-242f1fc0a867 5b059d3b-661d-4e07-b668-c140b421ade8 . TCHH NM_007113 exon3 c.G3414A p.R1138R ATATTGCCTCTCC . 139.0 39.0 175.0 0.0 . 275 . . . none . . PASS Atlas-SNP KCNN3 3782 hgsc.bcm.edu hg19 1 154841688 154841688 + Silent SNP G G A novel TCGA-A4-7996-01A-11D-2201-08 TCGA-A4-7996-10A-01D-2201-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cf8d4b0-1532-48a1-ac95-242f1fc0a867 5b059d3b-661d-4e07-b668-c140b421ade8 . KCNN3 NM_001204087 exon1 c.C753T p.S251S GGTGCTGCTGGCG . 113.0 41.0 161.0 0.0 . 141 . . . none . . PASS Atlas-SNP EFNA1 1942 hgsc.bcm.edu hg19 1 155104075 155104075 + Missense_Mutation SNP A A G novel TCGA-A4-7996-01A-11D-2201-08 TCGA-A4-7996-10A-01D-2201-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cf8d4b0-1532-48a1-ac95-242f1fc0a867 5b059d3b-661d-4e07-b668-c140b421ade8 . EFNA1 NM_182685 exon2 c.A353G p.K118R TGGGCAAGGAGTT . 47.0 10.0 65.0 0.0 . 10 . . . none . . PASS Atlas-SNP LRPPRC 10128 hgsc.bcm.edu hg19 2 44139638 44139638 + Missense_Mutation SNP A A G novel TCGA-A4-7996-01A-11D-2201-08 TCGA-A4-7996-10A-01D-2201-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cf8d4b0-1532-48a1-ac95-242f1fc0a867 5b059d3b-661d-4e07-b668-c140b421ade8 . LRPPRC NM_133259 exon30 c.T3208C p.Y1070H TGCTGTAGGTTTC . 86.0 33.0 58.0 0.0 . 105 . . . none . . PASS Atlas-SNP MTHFD2 10797 hgsc.bcm.edu hg19 2 74441208 74441208 + Missense_Mutation SNP G G A novel TCGA-A4-7996-01A-11D-2201-08 TCGA-A4-7996-10A-01D-2201-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cf8d4b0-1532-48a1-ac95-242f1fc0a867 5b059d3b-661d-4e07-b668-c140b421ade8 . MTHFD2 NM_006636 exon8 c.G892A p.V298I GTAGGAGTCAGAC . 244.0 71.0 274.0 0.0 . 43 . . . none . . PASS Atlas-SNP IL1RL2 8808 hgsc.bcm.edu hg19 2 102849533 102849533 + Nonsense_Mutation SNP C C T novel TCGA-A4-7996-01A-11D-2201-08 TCGA-A4-7996-10A-01D-2201-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cf8d4b0-1532-48a1-ac95-242f1fc0a867 5b059d3b-661d-4e07-b668-c140b421ade8 . IL1RL2 NM_003854 exon10 c.C1246T p.Q416X GAGAGACAATGTG . 128.0 38.0 127.0 0.0 . 118 . . . none . . PASS Atlas-SNP IL1RN 3557 hgsc.bcm.edu hg19 2 113885204 113885204 + Missense_Mutation SNP G G A novel TCGA-A4-7996-01A-11D-2201-08 TCGA-A4-7996-10A-01D-2201-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cf8d4b0-1532-48a1-ac95-242f1fc0a867 5b059d3b-661d-4e07-b668-c140b421ade8 . IL1RN NM_173842 exon1 c.G3A p.M1I CAGAATGGAAATC . 56.0 13.0 60.0 0.0 . 30 . . . none . . PASS Atlas-SNP PSMD14 10213 hgsc.bcm.edu hg19 2 162227815 162227815 + Silent SNP T T C novel TCGA-A4-7996-01A-11D-2201-08 TCGA-A4-7996-10A-01D-2201-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cf8d4b0-1532-48a1-ac95-242f1fc0a867 5b059d3b-661d-4e07-b668-c140b421ade8 . PSMD14 NM_005805 exon7 c.T444C p.I148I TCCCATTCAGAGT . 20.0 4.0 25.0 0.0 . 22 . . . none . . PASS Atlas-SNP NBEAL1 65065 hgsc.bcm.edu hg19 2 204039877 204039877 + Missense_Mutation SNP A A T novel TCGA-A4-7996-01A-11D-2201-08 TCGA-A4-7996-10A-01D-2201-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cf8d4b0-1532-48a1-ac95-242f1fc0a867 5b059d3b-661d-4e07-b668-c140b421ade8 . NBEAL1 NM_001114132 exon41 c.A6244T p.N2082Y TATGAAAATTTTG . 83.0 27.0 93.0 0.0 . 266 . . . none . . PASS Atlas-SNP GIGYF2 26058 hgsc.bcm.edu hg19 2 233660917 233660917 + Missense_Mutation SNP A A G novel TCGA-A4-7996-01A-11D-2201-08 TCGA-A4-7996-10A-01D-2201-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cf8d4b0-1532-48a1-ac95-242f1fc0a867 5b059d3b-661d-4e07-b668-c140b421ade8 .,2 GIGYF2 NM_001103147 exon16 c.A1688G p.Q563R ATCCTCAGGGAGA . 136.0 33.0 117.0 0.0 . 288 . . . none . . PASS Atlas-SNP CCR3 1232 hgsc.bcm.edu hg19 3 46307340 46307340 + Missense_Mutation SNP A A G novel TCGA-A4-7996-01A-11D-2201-08 TCGA-A4-7996-10A-01D-2201-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cf8d4b0-1532-48a1-ac95-242f1fc0a867 5b059d3b-661d-4e07-b668-c140b421ade8 . CCR3 NM_178328 exon3 c.A754G p.S252G TGCCCCAGTAAAA . 62.0 28.0 101.0 0.0 . 52 . . . none . . PASS Atlas-SNP GNAI2 2771 hgsc.bcm.edu hg19 3 50294280 50294280 + Missense_Mutation SNP A A C novel TCGA-A4-7996-01A-11D-2201-08 TCGA-A4-7996-10A-01D-2201-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cf8d4b0-1532-48a1-ac95-242f1fc0a867 5b059d3b-661d-4e07-b668-c140b421ade8 . GNAI2 NM_002070 exon6 c.A719C p.E240A ACGAGGAGATGGT . 87.0 35.0 105.0 0.0 . 42 . . . none . . PASS Atlas-SNP KIAA2018 205717 hgsc.bcm.edu hg19 3 113376113 113376113 + Silent SNP C C T rs62265537 TCGA-A4-7996-01A-11D-2201-08 TCGA-A4-7996-10A-01D-2201-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cf8d4b0-1532-48a1-ac95-242f1fc0a867 5b059d3b-661d-4e07-b668-c140b421ade8 KIAA2018,rectum,carcinoma,0,1 KIAA2018 NM_001009899 exon7 c.G4416A p.Q1472Q CTGTTGCTGCTGC . 46.0 7.0 42.0 2.0 . 180 . . . weak . . PASS Atlas-SNP ZXDC 79364 hgsc.bcm.edu hg19 3 126194470 126194470 + Missense_Mutation SNP T T C novel TCGA-A4-7996-01A-11D-2201-08 TCGA-A4-7996-10A-01D-2201-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cf8d4b0-1532-48a1-ac95-242f1fc0a867 5b059d3b-661d-4e07-b668-c140b421ade8 . ZXDC NM_025112 exon1 c.A239G p.E80G GGCACTTCCAGCA . 18.0 11.0 40.0 0.0 . 87 . . . none . . PASS Atlas-SNP C4orf36 132989 hgsc.bcm.edu hg19 4 87809274 87809274 + Missense_Mutation SNP A A T novel TCGA-A4-7996-01A-11D-2201-08 TCGA-A4-7996-10A-01D-2201-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cf8d4b0-1532-48a1-ac95-242f1fc0a867 5b059d3b-661d-4e07-b668-c140b421ade8 . C4orf36 NM_144645 exon3 c.T220A p.S74T ACTTACATTCTGC . 89.0 25.0 101.0 0.0 . 10 . . . none . . PASS Atlas-SNP PLK4 10733 hgsc.bcm.edu hg19 4 128812805 128812805 + Missense_Mutation SNP C C A novel TCGA-A4-7996-01A-11D-2201-08 TCGA-A4-7996-10A-01D-2201-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cf8d4b0-1532-48a1-ac95-242f1fc0a867 5b059d3b-661d-4e07-b668-c140b421ade8 . PLK4 NM_014264 exon9 c.C2007A p.N669K TGACAACATCAGT . 176.0 59.0 162.0 0.0 . 65 . . . none . . PASS Atlas-SNP FHDC1 85462 hgsc.bcm.edu hg19 4 153896859 153896859 + Missense_Mutation SNP G G A novel TCGA-A4-7996-01A-11D-2201-08 TCGA-A4-7996-10A-01D-2201-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cf8d4b0-1532-48a1-ac95-242f1fc0a867 5b059d3b-661d-4e07-b668-c140b421ade8 . FHDC1 NM_033393 exon11 c.G2416A p.G806S GGGGATGGCTCCA . 139.0 52.0 151.0 0.0 . 102 . . . none . . PASS Atlas-SNP SLC12A7 10723 hgsc.bcm.edu hg19 5 1074691 1074691 + Missense_Mutation SNP T T G novel TCGA-A4-7996-01A-11D-2201-08 TCGA-A4-7996-10A-01D-2201-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cf8d4b0-1532-48a1-ac95-242f1fc0a867 5b059d3b-661d-4e07-b668-c140b421ade8 . SLC12A7 NM_006598 exon16 c.A2063C p.K688T CAGTTCTTGGTGT . 100.0 31.0 103.0 0.0 . 97 . . . none . . PASS Atlas-SNP F12 2161 hgsc.bcm.edu hg19 5 176831350 176831350 + Missense_Mutation SNP A A G novel TCGA-A4-7996-01A-11D-2201-08 TCGA-A4-7996-10A-01D-2201-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cf8d4b0-1532-48a1-ac95-242f1fc0a867 5b059d3b-661d-4e07-b668-c140b421ade8 . F12 NM_000505 exon9 c.T865C p.Y289H CGCAGTACTCCCA . 36.0 15.0 33.0 0.0 . 35 . . . none . . PASS Atlas-SNP SKIV2L 6499 hgsc.bcm.edu hg19 6 31927082 31927082 + Missense_Mutation SNP C C A novel TCGA-A4-7996-01A-11D-2201-08 TCGA-A4-7996-10A-01D-2201-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cf8d4b0-1532-48a1-ac95-242f1fc0a867 5b059d3b-661d-4e07-b668-c140b421ade8 . SKIV2L NM_006929 exon2 c.C31A p.P11T CTACCCCCTCCAG . 457.0 133.0 587.0 1.0 . 97 . . . none . . PASS Atlas-SNP PKHD1 5314 hgsc.bcm.edu hg19 6 51930865 51930865 + Silent SNP A A G novel TCGA-A4-7996-01A-11D-2201-08 TCGA-A4-7996-10A-01D-2201-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cf8d4b0-1532-48a1-ac95-242f1fc0a867 5b059d3b-661d-4e07-b668-c140b421ade8 . PKHD1 NM_170724 exon12 c.T789C p.S263S AAACACAGATAAT . 53.0 15.0 66.0 0.0 . 927 . . . none . . PASS Atlas-SNP DOCK4 9732 hgsc.bcm.edu hg19 7 111555869 111555869 + Missense_Mutation SNP G G A novel TCGA-A4-7996-01A-11D-2201-08 TCGA-A4-7996-10A-01D-2201-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cf8d4b0-1532-48a1-ac95-242f1fc0a867 5b059d3b-661d-4e07-b668-c140b421ade8 . DOCK4 NM_014705 exon13 c.C1157T p.T386I TTCCTTGTTATGG . 48.0 13.0 35.0 0.0 . 365 . . . none . . PASS Atlas-SNP KIF13B 23303 hgsc.bcm.edu hg19 8 28991695 28991695 + Missense_Mutation SNP C C G novel TCGA-A4-7996-01A-11D-2201-08 TCGA-A4-7996-10A-01D-2201-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cf8d4b0-1532-48a1-ac95-242f1fc0a867 5b059d3b-661d-4e07-b668-c140b421ade8 . KIF13B NM_015254 exon22 c.G2646C p.Q882H CAGATGCTGTGGC . 122.0 45.0 119.0 0.0 . 192 . . . none . . PASS Atlas-SNP C8orf46 254778 hgsc.bcm.edu hg19 8 67405943 67405943 + Silent SNP T T A rs139160272 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-A4-7996-01A-11D-2201-08 TCGA-A4-7996-10A-01D-2201-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cf8d4b0-1532-48a1-ac95-242f1fc0a867 5b059d3b-661d-4e07-b668-c140b421ade8 . C8orf46 NM_152765 exon1 c.T60A p.I20I CGTGATTCCTTCC . 76.0 22.0 71.0 0.0 . 22 . . . alt T|0.999;C|0.001 . PASS Atlas-SNP KCNV2 169522 hgsc.bcm.edu hg19 9 2718279 2718279 + Silent SNP C C T novel TCGA-A4-7996-01A-11D-2201-08 TCGA-A4-7996-10A-01D-2201-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cf8d4b0-1532-48a1-ac95-242f1fc0a867 5b059d3b-661d-4e07-b668-c140b421ade8 . KCNV2 NM_133497 exon1 c.C540T p.R180R GCGCCGCTTCCTG . 17.0 6.0 34.0 0.0 . 72 . . . none . . PASS Atlas-SNP TLN1 7094 hgsc.bcm.edu hg19 9 35699405 35699405 + Missense_Mutation SNP C C A novel TCGA-A4-7996-01A-11D-2201-08 TCGA-A4-7996-10A-01D-2201-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cf8d4b0-1532-48a1-ac95-242f1fc0a867 5b059d3b-661d-4e07-b668-c140b421ade8 . TLN1 NM_006289 exon51 c.G6822T p.K2274N CACACGCTTTGAA . 99.0 32.0 97.0 0.0 . 185 . . . none . . PASS Atlas-SNP OLFML2A 169611 hgsc.bcm.edu hg19 9 127572163 127572163 + Silent SNP C C T novel TCGA-A4-7996-01A-11D-2201-08 TCGA-A4-7996-10A-01D-2201-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cf8d4b0-1532-48a1-ac95-242f1fc0a867 5b059d3b-661d-4e07-b668-c140b421ade8 . OLFML2A NM_182487 exon8 c.C1431T p.Y477Y CTTCTACTACAAC . 96.0 32.0 114.0 0.0 . 61 . . . none . . PASS Atlas-SNP CCBL1 883 hgsc.bcm.edu hg19 9 131607633 131607633 + Missense_Mutation SNP A A T novel TCGA-A4-7996-01A-11D-2201-08 TCGA-A4-7996-10A-01D-2201-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cf8d4b0-1532-48a1-ac95-242f1fc0a867 5b059d3b-661d-4e07-b668-c140b421ade8 . CCBL1 NM_001122672 exon2 c.T52A p.W18R CTCACCAGGGGTT . 48.0 8.0 88.0 0.0 . 36 . . . none . . PASS Atlas-SNP PTCHD3 374308 hgsc.bcm.edu hg19 10 27687708 27687708 + Missense_Mutation SNP A A G novel TCGA-A4-7996-01A-11D-2201-08 TCGA-A4-7996-10A-01D-2201-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cf8d4b0-1532-48a1-ac95-242f1fc0a867 5b059d3b-661d-4e07-b668-c140b421ade8 . PTCHD3 NM_001034842 exon4 c.T1819C p.F607L ATATAAAGACTAC . 95.0 63.0 92.0 0.0 . 140 . . . none . . PASS Atlas-SNP NCOA4 8031 hgsc.bcm.edu hg19 10 51585156 51585156 + Missense_Mutation SNP G G T novel TCGA-A4-7996-01A-11D-2201-08 TCGA-A4-7996-10A-01D-2201-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cf8d4b0-1532-48a1-ac95-242f1fc0a867 5b059d3b-661d-4e07-b668-c140b421ade8 . NCOA4 NM_001145261 exon9 c.G1303T p.D435Y GTGTGTGATGAGA . 104.0 69.0 99.0 0.0 . 58 . . . none . . PASS Atlas-SNP WAPAL 23063 hgsc.bcm.edu hg19 10 88259986 88259986 + Missense_Mutation SNP C C A novel TCGA-A4-7996-01A-11D-2201-08 TCGA-A4-7996-10A-01D-2201-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cf8d4b0-1532-48a1-ac95-242f1fc0a867 5b059d3b-661d-4e07-b668-c140b421ade8 . WAPAL NM_015045 exon3 c.G1014T p.K338N CCCTTTCTTTGCC . 166.0 117.0 190.0 0.0 . 81 . . . none . . PASS Atlas-SNP PAPSS2 9060 hgsc.bcm.edu hg19 10 89503313 89503313 + Missense_Mutation SNP C C T novel TCGA-A4-7996-01A-11D-2201-08 TCGA-A4-7996-10A-01D-2201-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cf8d4b0-1532-48a1-ac95-242f1fc0a867 5b059d3b-661d-4e07-b668-c140b421ade8 . PAPSS2 NM_001015880 exon11 c.C1406T p.A469V ACGCGGCTGTGCT . 91.0 47.0 108.0 0.0 . 46 . . . none . . PASS Atlas-SNP OR52K1 390036 hgsc.bcm.edu hg19 11 4510932 4510932 + Missense_Mutation SNP C C T novel TCGA-A4-7996-01A-11D-2201-08 TCGA-A4-7996-10A-01D-2201-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cf8d4b0-1532-48a1-ac95-242f1fc0a867 5b059d3b-661d-4e07-b668-c140b421ade8 . OR52K1 NM_001005171 exon1 c.C802T p.R268C GTAGCCCGCCATG . 230.0 66.0 300.0 0.0 . 70 . . . none . . PASS Atlas-SNP SLC25A45 283130 hgsc.bcm.edu hg19 11 65144060 65144060 + Missense_Mutation SNP T T C novel TCGA-A4-7996-01A-11D-2201-08 TCGA-A4-7996-10A-01D-2201-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cf8d4b0-1532-48a1-ac95-242f1fc0a867 5b059d3b-661d-4e07-b668-c140b421ade8 . SLC25A45 NM_182556 exon7 c.A685G p.M229V TCTGCATCCGGGA . 121.0 33.0 150.0 0.0 . 23 . . . none . . PASS Atlas-SNP RELA 5970 hgsc.bcm.edu hg19 11 65423175 65423175 + Silent SNP A A G novel TCGA-A4-7996-01A-11D-2201-08 TCGA-A4-7996-10A-01D-2201-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cf8d4b0-1532-48a1-ac95-242f1fc0a867 5b059d3b-661d-4e07-b668-c140b421ade8 . RELA NM_021975 exon10 c.T1017C p.A339A GACAGAAGCTGAG . 67.0 16.0 74.0 0.0 . 44 . . . none . . PASS Atlas-SNP ANO1 55107 hgsc.bcm.edu hg19 11 69951883 69951883 + Missense_Mutation SNP C C T novel TCGA-A4-7996-01A-11D-2201-08 TCGA-A4-7996-10A-01D-2201-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cf8d4b0-1532-48a1-ac95-242f1fc0a867 5b059d3b-661d-4e07-b668-c140b421ade8 ANO1_ENST00000355303,colon,carcinoma,0,2 ANO1 NM_018043 exon5 c.C736T p.R246W AAAACCCGGAGCA . 47.0 15.0 94.0 0.0 . 156 . . . none . . PASS Atlas-SNP ZC3H12C 85463 hgsc.bcm.edu hg19 11 110007683 110007683 + Missense_Mutation SNP T T C novel TCGA-A4-7996-01A-11D-2201-08 TCGA-A4-7996-10A-01D-2201-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cf8d4b0-1532-48a1-ac95-242f1fc0a867 5b059d3b-661d-4e07-b668-c140b421ade8 . ZC3H12C NM_033390 exon2 c.T317C p.I106T GTAGCATTTCAGT . 27.0 15.0 33.0 0.0 . 83 . . . none . . PASS Atlas-SNP DRD2 1813 hgsc.bcm.edu hg19 11 113295344 113295344 + Silent SNP A A G novel TCGA-A4-7996-01A-11D-2201-08 TCGA-A4-7996-10A-01D-2201-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cf8d4b0-1532-48a1-ac95-242f1fc0a867 5b059d3b-661d-4e07-b668-c140b421ade8 . DRD2 NM_016574 exon2 c.T30C p.D10D ATCATCATCATAC . 107.0 27.0 132.0 0.0 . 98 . . . none . . PASS Atlas-SNP PCED1B 91523 hgsc.bcm.edu hg19 12 47628909 47628909 + Silent SNP G G T novel TCGA-A4-7996-01A-11D-2201-08 TCGA-A4-7996-10A-01D-2201-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cf8d4b0-1532-48a1-ac95-242f1fc0a867 5b059d3b-661d-4e07-b668-c140b421ade8 . . NM_138371 exon2 c.G63T p.L21L CATCCTGGGGGAC . 74.0 24.0 89.0 0.0 . . . . . none . . PASS Atlas-SNP TMEM120B 144404 hgsc.bcm.edu hg19 12 122190050 122190050 + Missense_Mutation SNP G G A novel TCGA-A4-7996-01A-11D-2201-08 TCGA-A4-7996-10A-01D-2201-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cf8d4b0-1532-48a1-ac95-242f1fc0a867 5b059d3b-661d-4e07-b668-c140b421ade8 . TMEM120B NM_001080825 exon5 c.G382A p.E128K AAGGACGAATATG . 120.0 40.0 129.0 0.0 . 43 . . . none . . PASS Atlas-SNP DYNC1H1 1778 hgsc.bcm.edu hg19 14 102500785 102500785 + Missense_Mutation SNP A A G novel TCGA-A4-7996-01A-11D-2201-08 TCGA-A4-7996-10A-01D-2201-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cf8d4b0-1532-48a1-ac95-242f1fc0a867 5b059d3b-661d-4e07-b668-c140b421ade8 . DYNC1H1 NM_001376 exon56 c.A10750G p.N3584D CGATTCAATAGGT . 137.0 39.0 186.0 0.0 . 395 . . . none . . PASS Atlas-SNP NTRK3 4916 hgsc.bcm.edu hg19 15 88679229 88679229 + Missense_Mutation SNP G G C novel TCGA-A4-7996-01A-11D-2201-08 TCGA-A4-7996-10A-01D-2201-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cf8d4b0-1532-48a1-ac95-242f1fc0a867 5b059d3b-661d-4e07-b668-c140b421ade8 NTRK3_ENST00000360948,caecum,carcinoma,+2,1 NTRK3 NM_001243101 exon9 c.C808G p.L270V TCACCAGCGTCAA . 136.0 42.0 164.0 0.0 . 587 . . . none . . PASS Atlas-SNP ACAN 176 hgsc.bcm.edu hg19 15 89398462 89398462 + Silent SNP C C T novel TCGA-A4-7996-01A-11D-2201-08 TCGA-A4-7996-10A-01D-2201-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cf8d4b0-1532-48a1-ac95-242f1fc0a867 5b059d3b-661d-4e07-b668-c140b421ade8 . ACAN NM_001135 exon12 c.C2646T p.F882F TGACTTCAGTGGG . 74.0 22.0 101.0 0.0 . 220 . . . none . . PASS Atlas-SNP RHCG 51458 hgsc.bcm.edu hg19 15 90026327 90026327 + Missense_Mutation SNP T T C novel TCGA-A4-7996-01A-11D-2201-08 TCGA-A4-7996-10A-01D-2201-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cf8d4b0-1532-48a1-ac95-242f1fc0a867 5b059d3b-661d-4e07-b668-c140b421ade8 . RHCG NM_016321 exon3 c.A493G p.N165D ACTCATTCACAGC . 78.0 29.0 67.0 0.0 . 49 . . . none . . PASS Atlas-SNP BAIAP3 8938 hgsc.bcm.edu hg19 16 1398016 1398016 + Nonsense_Mutation SNP C C G novel TCGA-A4-7996-01A-11D-2201-08 TCGA-A4-7996-10A-01D-2201-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cf8d4b0-1532-48a1-ac95-242f1fc0a867 5b059d3b-661d-4e07-b668-c140b421ade8 . BAIAP3 NM_003933 exon32 c.C3252G p.Y1084X CTTCTACTTGTGA . 66.0 6.0 115.0 0.0 . 88 . . . none . . PASS Atlas-SNP PRSS22 64063 hgsc.bcm.edu hg19 16 2905588 2905588 + Silent SNP G G A novel TCGA-A4-7996-01A-11D-2201-08 TCGA-A4-7996-10A-01D-2201-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cf8d4b0-1532-48a1-ac95-242f1fc0a867 5b059d3b-661d-4e07-b668-c140b421ade8 . PRSS22 NM_022119 exon4 c.C546T p.S182S TTGGATGCTCCCC . 121.0 63.0 111.0 0.0 . 23 . . . none . . PASS Atlas-SNP PRSS22 64063 hgsc.bcm.edu hg19 16 2905589 2905589 + Missense_Mutation SNP C C T novel TCGA-A4-7996-01A-11D-2201-08 TCGA-A4-7996-10A-01D-2201-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cf8d4b0-1532-48a1-ac95-242f1fc0a867 5b059d3b-661d-4e07-b668-c140b421ade8 . PRSS22 NM_022119 exon4 c.G545A p.S182N TGGATGCTCCCCC . 121.0 62.0 113.0 0.0 . 23 . . . none . . PASS Atlas-SNP PSMB10 5699 hgsc.bcm.edu hg19 16 67970649 67970649 + Missense_Mutation SNP G G C novel TCGA-A4-7996-01A-11D-2201-08 TCGA-A4-7996-10A-01D-2201-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cf8d4b0-1532-48a1-ac95-242f1fc0a867 5b059d3b-661d-4e07-b668-c140b421ade8 . PSMB10 NM_002801 exon1 c.C4G p.L2V GCTTCAGCATCTT . 11.0 6.0 2.0 0.0 . 19 . . . none . . PASS Atlas-SNP SSH2 85464 hgsc.bcm.edu hg19 17 27975326 27975326 + Missense_Mutation SNP C C A novel TCGA-A4-7996-01A-11D-2201-08 TCGA-A4-7996-10A-01D-2201-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cf8d4b0-1532-48a1-ac95-242f1fc0a867 5b059d3b-661d-4e07-b668-c140b421ade8 . SSH2 NM_033389 exon13 c.G1182T p.M394I CACCCCCATTTTG . 85.0 46.0 60.0 0.0 . 107 . . . none . . PASS Atlas-SNP WIPF2 147179 hgsc.bcm.edu hg19 17 38416825 38416825 + Silent SNP G G A novel TCGA-A4-7996-01A-11D-2201-08 TCGA-A4-7996-10A-01D-2201-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cf8d4b0-1532-48a1-ac95-242f1fc0a867 5b059d3b-661d-4e07-b668-c140b421ade8 . WIPF2 NM_133264 exon3 c.G102A p.Q34Q TGAGCAGCGGGGT . 161.0 38.0 158.0 0.0 . 55 . . . none . . PASS Atlas-SNP GAREM 64762 hgsc.bcm.edu hg19 18 29867256 29867256 + Missense_Mutation SNP A A G novel TCGA-A4-7996-01A-11D-2201-08 TCGA-A4-7996-10A-01D-2201-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cf8d4b0-1532-48a1-ac95-242f1fc0a867 5b059d3b-661d-4e07-b668-c140b421ade8 . . NM_022751 exon4 c.T1304C p.F435S TCTGGGAAAAGGT . 210.0 69.0 211.0 0.0 . . . . . none . . PASS Atlas-SNP ZNF516 9658 hgsc.bcm.edu hg19 18 74154041 74154041 + Missense_Mutation SNP C C T novel TCGA-A4-7996-01A-11D-2201-08 TCGA-A4-7996-10A-01D-2201-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cf8d4b0-1532-48a1-ac95-242f1fc0a867 5b059d3b-661d-4e07-b668-c140b421ade8 . ZNF516 NM_014643 exon3 c.G970A p.E324K CCTCCTCCTGGAC . 87.0 24.0 98.0 0.0 . 102 . . . none . . PASS Atlas-SNP PTPRS 5802 hgsc.bcm.edu hg19 19 5208061 5208061 + Missense_Mutation SNP C C A novel TCGA-A4-7996-01A-11D-2201-08 TCGA-A4-7996-10A-01D-2201-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cf8d4b0-1532-48a1-ac95-242f1fc0a867 5b059d3b-661d-4e07-b668-c140b421ade8 PTPRS,colon,carcinoma,0,2 PTPRS NM_002850 exon37 c.G5650T p.V1884L TGCCCACGCCGGC . 38.0 2.0 32.0 0.0 . 169 . . . none . . PASS Atlas-SNP CD209 30835 hgsc.bcm.edu hg19 19 7810714 7810714 + Silent SNP G G A novel TCGA-A4-7996-01A-11D-2201-08 TCGA-A4-7996-10A-01D-2201-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cf8d4b0-1532-48a1-ac95-242f1fc0a867 5b059d3b-661d-4e07-b668-c140b421ade8 . CD209 NM_021155 exon4 c.C438T p.I146I CTGGTAGATCTCC . 237.0 73.0 367.0 0.0 . 166 . . . none . . PASS Atlas-SNP BRD4 23476 hgsc.bcm.edu hg19 19 15350519 15350519 + Silent SNP C C T novel TCGA-A4-7996-01A-11D-2201-08 TCGA-A4-7996-10A-01D-2201-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cf8d4b0-1532-48a1-ac95-242f1fc0a867 5b059d3b-661d-4e07-b668-c140b421ade8 . BRD4 NM_058243 exon16 c.G3396A p.E1132E GGGGGGCTCCGGC . 69.0 27.0 88.0 0.0 . 172 . . . none . . PASS Atlas-SNP ZNF99 7652 hgsc.bcm.edu hg19 19 22941279 22941279 + Missense_Mutation SNP C C G novel TCGA-A4-7996-01A-11D-2201-08 TCGA-A4-7996-10A-01D-2201-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cf8d4b0-1532-48a1-ac95-242f1fc0a867 5b059d3b-661d-4e07-b668-c140b421ade8 ZNF99,NS,carcinoma,0,1 ZNF99 NM_001080409 exon4 c.G1432C p.E478Q GTTTCTCTCCAGT . 64.0 3.0 46.0 0.0 . 273 . . . none . . PASS Atlas-SNP FCGBP 8857 hgsc.bcm.edu hg19 19 40419757 40419757 + Silent SNP A A G novel TCGA-A4-7996-01A-11D-2201-08 TCGA-A4-7996-10A-01D-2201-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cf8d4b0-1532-48a1-ac95-242f1fc0a867 5b059d3b-661d-4e07-b668-c140b421ade8 . FCGBP NM_003890 exon6 c.T3237C p.H1079H CTTGCTATGGCAC . 162.0 44.0 181.0 0.0 . 416 . . . none . . PASS Atlas-SNP HRC 3270 hgsc.bcm.edu hg19 19 49658077 49658077 + Missense_Mutation SNP C C G novel TCGA-A4-7996-01A-11D-2201-08 TCGA-A4-7996-10A-01D-2201-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cf8d4b0-1532-48a1-ac95-242f1fc0a867 5b059d3b-661d-4e07-b668-c140b421ade8 . HRC NM_002152 exon1 c.G418C p.E140Q TGTCTTCACTCCC . 113.0 34.0 152.0 0.0 . 85 . . . none . . PASS Atlas-SNP VN1R2 317701 hgsc.bcm.edu hg19 19 53762787 53762787 + Nonsense_Mutation SNP C C T rs374706531 TCGA-A4-7996-01A-11D-2201-08 TCGA-A4-7996-10A-01D-2201-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cf8d4b0-1532-48a1-ac95-242f1fc0a867 5b059d3b-661d-4e07-b668-c140b421ade8 VN1R2,colon,carcinoma,-1,1 VN1R2 NM_173856 exon1 c.C1159T p.R387X AATAGACGATTCT . 139.0 35.0 165.0 0.0 . 71 . . . weak . . PASS Atlas-SNP SLC24A3 57419 hgsc.bcm.edu hg19 20 19679325 19679325 + Splice_Site SNP G G C rs201062990 by1000genomes;alternate_allele TCGA-A4-7996-01A-11D-2201-08 TCGA-A4-7996-10A-01D-2201-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cf8d4b0-1532-48a1-ac95-242f1fc0a867 5b059d3b-661d-4e07-b668-c140b421ade8 . SLC24A3 NM_020689 exon15 c.1719+1G>C . TCCTACGTAAGTG . 19.0 9.0 14.0 0.0 . 92 . . . alt G|1.000;A|0.000 . PASS Atlas-SNP MOCS3 27304 hgsc.bcm.edu hg19 20 49576203 49576203 + Missense_Mutation SNP T T G novel TCGA-A4-7996-01A-11D-2201-08 TCGA-A4-7996-10A-01D-2201-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cf8d4b0-1532-48a1-ac95-242f1fc0a867 5b059d3b-661d-4e07-b668-c140b421ade8 . MOCS3 NM_014484 exon1 c.T824G p.L275W GCAGCTTGTTGCT . 120.0 63.0 104.0 0.0 . 44 . . . none . . PASS Atlas-SNP ARVCF 421 hgsc.bcm.edu hg19 22 19965495 19965495 + Missense_Mutation SNP C C G rs373958610 alternate_allele TCGA-A4-7996-01A-11D-2201-08 TCGA-A4-7996-10A-01D-2201-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cf8d4b0-1532-48a1-ac95-242f1fc0a867 5b059d3b-661d-4e07-b668-c140b421ade8 . ARVCF NM_001670 exon8 c.G1684C p.D562H CAGTGTCCTTCCG . 58.0 16.0 77.0 0.0 . 54 . . . alt . . PASS Atlas-SNP RGPD8 727851 hgsc.bcm.edu hg19 2 113158709 113158709 + Frame_Shift_Del DEL T T - novel TCGA-A4-7996-01A-11D-2201-08 TCGA-A4-7996-10A-01D-2201-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cf8d4b0-1532-48a1-ac95-242f1fc0a867 5b059d3b-661d-4e07-b668-c140b421ade8 . RGPD8 NM_001164463 exon12 c.1744delT p.Y582fs . . 379.0 26.0 360.0 0.0 . 81 . 0.0686016 0 none . . PASS Atlas-INDEL ZNF200 7752 hgsc.bcm.edu hg19 16 3274128 3274128 + Frame_Shift_Del DEL G G - novel TCGA-A4-7996-01A-11D-2201-08 TCGA-A4-7996-10A-01D-2201-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cf8d4b0-1532-48a1-ac95-242f1fc0a867 5b059d3b-661d-4e07-b668-c140b421ade8 . ZNF200 NM_003454 exon5 c.953delG p.R318fs . . 233.0 109.0 186.0 0.0 . 36 . 0.467811 0 none . . PASS Atlas-INDEL RGPD5 84220 hgsc.bcm.edu hg19 2 110582512 110582512 + Frame_Shift_Del DEL A A - novel TCGA-A4-7996-01A-11D-2201-08 TCGA-A4-7996-10A-01D-2201-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cf8d4b0-1532-48a1-ac95-242f1fc0a867 5b059d3b-661d-4e07-b668-c140b421ade8 . RGPD5 NM_032260 exon13 c.1739delC p.A580fs . . 362.0 26.0 396.0 0.0 . 1 . 0.0718232 0 none . . PASS Atlas-INDEL RGPD5 84220 hgsc.bcm.edu hg19 2 111304146 111304146 + Frame_Shift_Del DEL T T - novel TCGA-A4-7996-01A-11D-2201-08 TCGA-A4-7996-10A-01D-2201-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cf8d4b0-1532-48a1-ac95-242f1fc0a867 5b059d3b-661d-4e07-b668-c140b421ade8 . RGPD5 NM_032260 exon13 c.1744delT p.Y582fs . . 376.0 27.0 366.0 0.0 . 1 . 0.0718085 0 none . . PASS Atlas-INDEL TRAPPC9 83696 hgsc.bcm.edu hg19 8 141449171 141449172 + Frame_Shift_Del DEL TT TT - novel TCGA-A4-7996-01A-11D-2201-08 TCGA-A4-7996-10A-01D-2201-08 TT TT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cf8d4b0-1532-48a1-ac95-242f1fc0a867 5b059d3b-661d-4e07-b668-c140b421ade8 . TRAPPC9 NM_031466 exon3 c.1004_1005del p.335_335del . . 160.0 72.0 174.0 0.0 . 114 . 0.45 0 none . . PASS Atlas-INDEL COL5A2 1290 hgsc.bcm.edu hg19 2 189898818 189898819 + Frame_Shift_Ins INS - - TT novel TCGA-A4-7996-01A-11D-2201-08 TCGA-A4-7996-10A-01D-2201-08 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cf8d4b0-1532-48a1-ac95-242f1fc0a867 5b059d3b-661d-4e07-b668-c140b421ade8 . COL5A2 NM_000393 exon54 c.4478_4479insAA p.I1493fs . . 68.0 15.0 66.0 0.0 . 230 . 0.220588 0 none . . PASS Atlas-INDEL CLTB 1212 hgsc.bcm.edu hg19 5 175843340 175843342 + In_Frame_Del DEL AGA AGA - novel TCGA-A4-7996-01A-11D-2201-08 TCGA-A4-7996-10A-01D-2201-08 AGA AGA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cf8d4b0-1532-48a1-ac95-242f1fc0a867 5b059d3b-661d-4e07-b668-c140b421ade8 . CLTB NM_007097 exon1 c.24_26del p.8_9del . . 36.0 15.0 71.0 0.0 . 17 . 0.416667 0 none . . PASS Atlas-INDEL PKDREJ 10343 hgsc.bcm.edu hg19 22 46655720 46655720 + Frame_Shift_Del DEL G G - novel TCGA-A4-7996-01A-11D-2201-08 TCGA-A4-7996-10A-01D-2201-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cf8d4b0-1532-48a1-ac95-242f1fc0a867 5b059d3b-661d-4e07-b668-c140b421ade8 . PKDREJ NM_006071 exon1 c.3501delT p.P1167fs . . 205.0 50.0 208.0 0.0 . 195 . 0.243902 0 none . . PASS Atlas-INDEL MPP6 51678 hgsc.bcm.edu hg19 7 24727063 24727075 + Frame_Shift_Del DEL GACTTGAAGAAAA GACTTGAAGAAAA - novel TCGA-A4-7996-01A-11D-2201-08 TCGA-A4-7996-10A-01D-2201-08 GACTTGAAGAAAA GACTTGAAGAAAA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cf8d4b0-1532-48a1-ac95-242f1fc0a867 5b059d3b-661d-4e07-b668-c140b421ade8 . MPP6 NM_016447 exon13 c.1452_1464del p.484_488del . . 142.0 50.0 130.0 0.0 . 62 . 0.352113 0 none . . PASS Atlas-INDEL MAT2B 27430 hgsc.bcm.edu hg19 5 162940576 162940577 + Frame_Shift_Ins INS - - A novel TCGA-A4-7996-01A-11D-2201-08 TCGA-A4-7996-10A-01D-2201-08 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cf8d4b0-1532-48a1-ac95-242f1fc0a867 5b059d3b-661d-4e07-b668-c140b421ade8 . MAT2B NM_013283 exon3 c.274_275insA p.H92fs . . 104.0 37.0 155.0 0.0 . 42 . 0.355769 0 none . . PASS Atlas-INDEL ANKZF1 55139 hgsc.bcm.edu hg19 2 220099806 220099806 + Frame_Shift_Del DEL C C - novel TCGA-A4-7996-01A-11D-2201-08 TCGA-A4-7996-10A-01D-2201-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cf8d4b0-1532-48a1-ac95-242f1fc0a867 5b059d3b-661d-4e07-b668-c140b421ade8 . ANKZF1 NM_018089 exon10 c.1462delG p.A488fs . . 70.0 20.0 83.0 0.0 . 45 . 0.285714 0 none . . PASS Atlas-INDEL DENND5A 23258 hgsc.bcm.edu hg19 11 9173965 9173965 + Frame_Shift_Del DEL G G - novel TCGA-A4-7996-01A-11D-2201-08 TCGA-A4-7996-10A-01D-2201-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cf8d4b0-1532-48a1-ac95-242f1fc0a867 5b059d3b-661d-4e07-b668-c140b421ade8 . DENND5A NM_001243254 exon13 c.2462delT p.L821fs . . 188.0 58.0 169.0 0.0 . 84 . 0.308511 0 none . . PASS Atlas-INDEL RLIM 51132 hgsc.bcm.edu hg19 X 73815805 73815805 + Frame_Shift_Del DEL T T - novel TCGA-A4-7996-01A-11D-2201-08 TCGA-A4-7996-10A-01D-2201-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cf8d4b0-1532-48a1-ac95-242f1fc0a867 5b059d3b-661d-4e07-b668-c140b421ade8 . RLIM NM_183353 exon3 c.9delC p.N3fs . . 69.0 31.0 87.0 0.0 . 90 . 0.449275 0 none . . PASS Atlas-INDEL BAIAP3 8938 hgsc.bcm.edu hg19 16 1398015 1398021 + Frame_Shift_Del DEL ACTTGTG ACTTGTG - novel TCGA-A4-7996-01A-11D-2201-08 TCGA-A4-7996-10A-01D-2201-08 ACTTGTG ACTTGTG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cf8d4b0-1532-48a1-ac95-242f1fc0a867 5b059d3b-661d-4e07-b668-c140b421ade8 . BAIAP3 NM_003933 exon32 c.3250_3254del p.1084_1085del . . 115.0 43.0 120.0 0.0 . 88 . 0.373913 0 none . . PASS Atlas-INDEL ABCC2 1244 hgsc.bcm.edu hg19 10 101606844 101606844 + Frame_Shift_Del DEL G G - novel TCGA-A4-7996-01A-11D-2201-08 TCGA-A4-7996-10A-01D-2201-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cf8d4b0-1532-48a1-ac95-242f1fc0a867 5b059d3b-661d-4e07-b668-c140b421ade8 . ABCC2 NM_000392 exon30 c.4272delT p.L1424fs . . 150.0 101.0 197.0 0.0 . 160 . 0.673333 0 none . . PASS Atlas-INDEL PTEN 5728 hgsc.bcm.edu hg19 10 89717645 89717646 + Frame_Shift_Del DEL AT AT - novel TCGA-A4-7996-01A-11D-2201-08 TCGA-A4-7996-10A-01D-2201-08 AT AT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cf8d4b0-1532-48a1-ac95-242f1fc0a867 5b059d3b-661d-4e07-b668-c140b421ade8 . PTEN NM_000314 exon7 c.669_670del p.223_224del . . 150.0 84.0 162.0 0.0 . 3652 . 0.56 0 none . . PASS Atlas-INDEL FAM72A 729533 hgsc.bcm.edu hg19 1 206139310 206139310 + Frame_Shift_Del DEL T T - novel TCGA-A4-7996-01A-11D-2201-08 TCGA-A4-7996-10A-01D-2201-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cf8d4b0-1532-48a1-ac95-242f1fc0a867 5b059d3b-661d-4e07-b668-c140b421ade8 . FAM72A NM_001123168 exon1 c.5delC p.S2fs . . 359.0 47.0 401.0 0.0 . 9 . 0.130919 0 none . . PASS Atlas-INDEL MMP21 118856 hgsc.bcm.edu hg19 10 127455343 127455343 + Frame_Shift_Del DEL T T - novel TCGA-A4-7996-01A-11D-2201-08 TCGA-A4-7996-10A-01D-2201-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cf8d4b0-1532-48a1-ac95-242f1fc0a867 5b059d3b-661d-4e07-b668-c140b421ade8 . MMP21 NM_147191 exon7 c.1599delG p.K533fs . . 119.0 63.0 138.0 0.0 . 46 . 0.529412 0 none . . PASS Atlas-INDEL ZMIZ2 83637 hgsc.bcm.edu hg19 7 44807159 44807159 + Frame_Shift_Del DEL G G - novel TCGA-A4-7996-01A-11D-2201-08 TCGA-A4-7996-10A-01D-2201-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cf8d4b0-1532-48a1-ac95-242f1fc0a867 5b059d3b-661d-4e07-b668-c140b421ade8 . ZMIZ2 NM_031449 exon19 c.2699delT p.L900fs . . 122.0 24.0 118.0 0.0 . 82 . 0.196721 0 none . . PASS Atlas-INDEL TRAF4 9618 hgsc.bcm.edu hg19 17 27074242 27074243 + Frame_Shift_Ins INS - - C novel TCGA-A4-7996-01A-11D-2201-08 TCGA-A4-7996-10A-01D-2201-08 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cf8d4b0-1532-48a1-ac95-242f1fc0a867 5b059d3b-661d-4e07-b668-c140b421ade8 . TRAF4 NM_004295 exon2 c.155_156insC p.F52fs . . 158.0 82.0 184.0 0.0 . 20 . 0.518987 0 none . . PASS Atlas-INDEL