Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq TVarRat NVarRat dbSNP_Strength dbSNP_AF dbSNP_PopFreq Confidence Algorithm TMEM200B 399474 hgsc.bcm.edu hg19 1 29447533 29447533 + Missense_Mutation SNP G G A novel TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . TMEM200B NM_001171868 exon2 c.C808T p.L270F CCCCAAGGAGGAG . 34.0 14.0 72.0 0.0 . 9 . . . none . . PASS Atlas-SNP ABCA4 24 hgsc.bcm.edu hg19 1 94548962 94548962 + Silent SNP G G A novel TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . ABCA4 NM_000350 exon7 c.C804T p.I268I CAGATTGATACCT . 257.0 119.0 393.0 1.0 . 275 . . . none . . PASS Atlas-SNP PTPN22 26191 hgsc.bcm.edu hg19 1 114402065 114402065 + Silent SNP A A G novel TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . PTPN22 NM_015967 exon2 c.T105C p.S35S CTTGGTAGATTGC . 97.0 46.0 151.0 0.0 . 90 . . . none . . PASS Atlas-SNP ADCK3 56997 hgsc.bcm.edu hg19 1 227174187 227174187 + Missense_Mutation SNP A A G novel TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . ADCK3 NM_020247 exon15 c.A1693G p.I565V ATCCTCATCCTGG . 97.0 45.0 134.0 0.0 . 77 . . . none . . PASS Atlas-SNP PCNXL2 80003 hgsc.bcm.edu hg19 1 233134020 233134020 + Missense_Mutation SNP G G A novel TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . PCNXL2 NM_014801 exon32 c.C5768T p.S1923F TCACAGGATGACA . 18.0 9.0 28.0 0.0 . 204 . . . none . . PASS Atlas-SNP GCFC2 6936 hgsc.bcm.edu hg19 2 75929399 75929399 + Missense_Mutation SNP G G T novel TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . . NM_001201335 exon3 c.C545A p.P182H TCATCAGGCTCAC . 135.0 59.0 202.0 0.0 . . . . . none . . PASS Atlas-SNP IL1R1 3554 hgsc.bcm.edu hg19 2 102792833 102792833 + Missense_Mutation SNP G G C novel TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 IL1R1,NS,malignant_melanoma,0,2 IL1R1 NM_000877 exon11 c.G1324C p.E442Q ATTAATGAAAACG . 36.0 2.0 52.0 0.0 . 52 . . . none . . PASS Atlas-SNP SCN2A 6326 hgsc.bcm.edu hg19 2 166210795 166210795 + Missense_Mutation SNP A A C novel TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . SCN2A NM_001040143 exon16 c.A3013C p.I1005L CTCCAGATTGCTG . 154.0 66.0 219.0 0.0 . 589 . . . none . . PASS Atlas-SNP PDE11A 50940 hgsc.bcm.edu hg19 2 178936278 178936278 + Missense_Mutation SNP G G T novel TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 PDE11A,NS,carcinoma,0,1 PDE11A NM_016953 exon1 c.C887A p.T296K TTGACCGTTTCTC . 100.0 52.0 169.0 0.0 . 283 . . . none . . PASS Atlas-SNP KIAA0226 9711 hgsc.bcm.edu hg19 3 197427622 197427622 + Missense_Mutation SNP C C G novel TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . KIAA0226 NM_014687 exon7 c.G1123C p.G375R CCCCACCTCCTTC . 36.0 11.0 76.0 0.0 . 136 . . . none . . PASS Atlas-SNP PCDHGB7 56099 hgsc.bcm.edu hg19 5 140798373 140798373 + Missense_Mutation SNP C C G rs200530054 bycluster;by1000genomes;alternate_allele TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . PCDHGB7 NM_018927 exon1 c.C947G p.T316R GATATACGATAAA . 24.0 4.0 27.0 0.0 . 117 . . . alt C|1.000;T|0.000 . PASS Atlas-SNP ARHGEF37 389337 hgsc.bcm.edu hg19 5 149006787 149006787 + Missense_Mutation SNP A A G novel TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . ARHGEF37 NM_001001669 exon11 c.A1613G p.N538S TTCAAAACAAGGA . 116.0 43.0 251.0 0.0 . 45 . . . none . . PASS Atlas-SNP PRSS16 10279 hgsc.bcm.edu hg19 6 27222771 27222771 + Missense_Mutation SNP C C T novel TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . PRSS16 NM_005865 exon11 c.C1337T p.T446I GGGACACAGACCC . 184.0 83.0 266.0 0.0 . 66 . . . none . . PASS Atlas-SNP HSPA1L 3305 hgsc.bcm.edu hg19 6 31779708 31779708 + Silent SNP G G A novel TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . HSPA1L NM_005527 exon2 c.C42T p.G14G GGTGGTGCCCAGG . 36.0 16.0 85.0 0.0 . 185 . . . none . . PASS Atlas-SNP SLC26A5 375611 hgsc.bcm.edu hg19 7 103029857 103029857 + Silent SNP G G A novel TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . SLC26A5 NM_206883 exon13 c.C1326T p.A442A CACAATGGCCGAC . 78.0 30.0 78.0 0.0 . 231 . . . none . . PASS Atlas-SNP MAPK15 225689 hgsc.bcm.edu hg19 8 144801161 144801161 + Splice_Site SNP A A T novel TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . MAPK15 NM_139021 exon6 c.418-2A>T . CTCTGCAGCCGTC . 12.0 7.0 26.0 0.0 . 32 . . . none . . PASS Atlas-SNP SLC1A1 6505 hgsc.bcm.edu hg19 9 4585458 4585458 + Missense_Mutation SNP T T C novel TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . SLC1A1 NM_004170 exon12 c.T1475C p.L492P CAATCCTTGACAA . 56.0 27.0 84.0 0.0 . 43 . . . none . . PASS Atlas-SNP APTX 54840 hgsc.bcm.edu hg19 9 32988092 32988092 + Nonsense_Mutation SNP T T A novel TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . APTX NM_001195252 exon3 c.A211T p.K71X TTACCTTGACATA . 76.0 25.0 132.0 0.0 . 44 . . . none . . PASS Atlas-SNP PTCH1 5727 hgsc.bcm.edu hg19 9 98268787 98268787 + Missense_Mutation SNP C C T novel TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . PTCH1 NM_000264 exon2 c.G296A p.G99D AACTTGCCGCAGT . 36.0 17.0 77.0 0.0 . 1850 . . . none . . PASS Atlas-SNP ZMYND11 10771 hgsc.bcm.edu hg19 10 287963 287963 + Missense_Mutation SNP A A G novel TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . ZMYND11 NM_006624 exon10 c.A834G p.I278M CCAGATACCTAAT . 46.0 17.0 76.0 0.0 . 72 . . . none . . PASS Atlas-SNP PPRC1 23082 hgsc.bcm.edu hg19 10 103900396 103900396 + Missense_Mutation SNP G G A rs17847386 bycluster TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 PPRC1,colon,carcinoma,0,1 PPRC1 NM_015062 exon5 c.G2131A p.V711M CTCCTCGTGGAGT . 64.0 6.0 101.0 0.0 . 151 . . . weak G|0.999;T|0.001 . PASS Atlas-SNP SLC43A3 29015 hgsc.bcm.edu hg19 11 57177469 57177469 + Missense_Mutation SNP T T G novel TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . SLC43A3 NM_017611 exon12 c.A1186C p.I396L GCAGGATGAAGGT . 24.0 7.0 47.0 0.0 . 54 . . . none . . PASS Atlas-SNP USP28 57646 hgsc.bcm.edu hg19 11 113705056 113705056 + Missense_Mutation SNP G G C novel TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . USP28 NM_020886 exon6 c.C536G p.S179C AAGAGAGACTGAA . 34.0 18.0 47.0 0.0 . 135 . . . none . . PASS Atlas-SNP DPAGT1 1798 hgsc.bcm.edu hg19 11 118969112 118969112 + Splice_Site SNP C C T novel TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 DPAGT1,NS,malignant_melanoma,0,1 DPAGT1 NM_001382 exon6 c.728+1G>A . TACTTACCAGTTG . 101.0 50.0 175.0 0.0 . 43 . . . none . . PASS Atlas-SNP TFCP2 7024 hgsc.bcm.edu hg19 12 51495806 51495806 + Missense_Mutation SNP C C T novel TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . TFCP2 NM_001173452 exon11 c.G1063A p.A355T AATCTGCCCCTGG . 65.0 15.0 93.0 0.0 . 49 . . . none . . PASS Atlas-SNP SLC39A5 283375 hgsc.bcm.edu hg19 12 56626598 56626598 + Missense_Mutation SNP A A G novel TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . SLC39A5 NM_173596 exon5 c.A413G p.D138G GCCTGGACCTCCT . 83.0 32.0 86.0 0.0 . 52 . . . none . . PASS Atlas-SNP GLI1 2735 hgsc.bcm.edu hg19 12 57864354 57864354 + Missense_Mutation SNP C C T rs368078339 TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . GLI1 NM_005269 exon12 c.C1831T p.R611W CTGGATCGGATAG . 57.0 21.0 77.0 0.0 . 141 . . . weak . . PASS Atlas-SNP NAA16 79612 hgsc.bcm.edu hg19 13 41894809 41894809 + Missense_Mutation SNP A A T novel TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . NAA16 NM_001110798 exon4 c.A251T p.H84L GTTGGCATGTATA . 58.0 4.0 72.0 0.0 . 74 . . . none . . PASS Atlas-SNP MDGA2 161357 hgsc.bcm.edu hg19 14 47351354 47351354 + Missense_Mutation SNP G G T rs369029916 alternate_allele TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . MDGA2 NM_001113498 exon11 c.C2309A p.T770K TTATATGTAATTA . 29.0 7.0 25.0 0.0 . 470 . . . alt . . PASS Atlas-SNP KCNK13 56659 hgsc.bcm.edu hg19 14 90528673 90528673 + Missense_Mutation SNP G G A novel TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . KCNK13 NM_022054 exon1 c.G124A p.E42K GCGCTGGAGCTGG . 7.0 4.0 12.0 0.0 . 76 . . . none . . PASS Atlas-SNP RRN3 54700 hgsc.bcm.edu hg19 16 15159184 15159184 + Missense_Mutation SNP T T C novel TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . RRN3 NM_018427 exon16 c.A1598G p.N533S TGGCGATTGTTCC . 77.0 13.0 105.0 0.0 . 36 . . . none . . PASS Atlas-SNP TANGO6 79613 hgsc.bcm.edu hg19 16 68909060 68909060 + Missense_Mutation SNP G G T novel TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . . NM_024562 exon5 c.G998T p.G333V CAGCGGGAGCAGC . 37.0 17.0 97.0 0.0 . . . . . none . . PASS Atlas-SNP CLUH 23277 hgsc.bcm.edu hg19 17 2601454 2601454 + Missense_Mutation SNP A A G novel TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . . NM_015229 exon10 c.T1583C p.L528P ATCTTGAGGGGCC . 9.0 7.0 9.0 0.0 . . . . . none . . PASS Atlas-SNP DNAH9 1770 hgsc.bcm.edu hg19 17 11772554 11772554 + Missense_Mutation SNP C C T novel TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . DNAH9 NM_001372 exon51 c.C10037T p.S3346F CCATCTCCCTTGC . 91.0 28.0 118.0 0.0 . 695 . . . none . . PASS Atlas-SNP ZNF207 7756 hgsc.bcm.edu hg19 17 30692444 30692444 + Missense_Mutation SNP A A G novel TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . ZNF207 NM_001098507 exon8 c.A766G p.T256A GCACCAACAGCAA . 82.0 4.0 62.0 0.0 . 32 . . . none . . PASS Atlas-SNP KRTAP4-5 85289 hgsc.bcm.edu hg19 17 39305911 39305911 + Missense_Mutation SNP G G A rs141058010 bycluster TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 KRTAP4-5,NS,carcinoma,0,1 KRTAP4-5 NM_033188 exon1 c.C109T p.R37C TGGGGCGGCAGCA . 78.0 7.0 86.0 1.0 . 34 . . . weak . . PASS Atlas-SNP SLC16A5 9121 hgsc.bcm.edu hg19 17 73096278 73096278 + Missense_Mutation SNP G G T novel TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . SLC16A5 NM_001271765 exon5 c.G520T p.V174F TTCCTTGTCTTCG . 49.0 4.0 77.0 0.0 . 80 . . . none . . PASS Atlas-SNP ZNF439 90594 hgsc.bcm.edu hg19 19 11978986 11978986 + Missense_Mutation SNP T T C novel TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . ZNF439 NM_152262 exon3 c.T1102C p.S368P GCCAAGTCATTTC . 60.0 4.0 109.0 0.0 . 67 . . . none . . PASS Atlas-SNP KPTN 11133 hgsc.bcm.edu hg19 19 47987312 47987312 + Missense_Mutation SNP C C T novel TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . KPTN NM_007059 exon1 c.G106A p.G36S GCCCGCCGGCGCC . 43.0 17.0 64.0 0.0 . 34 . . . none . . PASS Atlas-SNP MKKS 8195 hgsc.bcm.edu hg19 20 10385928 10385928 + Missense_Mutation SNP C C A novel TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . MKKS NM_170784 exon6 c.G1680T p.L560F AAGATCCAAAATC . 32.0 9.0 44.0 0.0 . 35 . . . none . . PASS Atlas-SNP GYG2 8908 hgsc.bcm.edu hg19 X 2772026 2772026 + Missense_Mutation SNP T T A novel TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . GYG2 NM_003918 exon5 c.T248A p.I83N GGGTCATCCTCTC . 47.0 43.0 47.0 0.0 . 39 . . . none . . PASS Atlas-SNP PHKA1 5255 hgsc.bcm.edu hg19 X 71829514 71829514 + Missense_Mutation SNP C C T novel TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . PHKA1 NM_002637 exon23 c.G2566A p.V856I GTCCTACTGTCAA . 53.0 47.0 80.0 0.0 . 129 . . . none . . PASS Atlas-SNP NCAPH 23397 hgsc.bcm.edu hg19 2 97017659 97017669 + Frame_Shift_Del DEL AGAAGTGAACT AGAAGTGAACT - novel TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 AGAAGTGAACT AGAAGTGAACT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . NCAPH NM_015341 exon7 c.810_820del p.270_274del . . 55.0 17.0 112.0 0.0 . 67 . 0.309091 0 none . . PASS Atlas-INDEL TRIO 7204 hgsc.bcm.edu hg19 5 14387672 14387672 + Frame_Shift_Del DEL T T - novel TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . TRIO NM_007118 exon22 c.3695delC p.S1232fs . . 94.0 38.0 193.0 0.0 . 305 . 0.404255 0 none . . PASS Atlas-INDEL CRNN 49860 hgsc.bcm.edu hg19 1 152382377 152382391 + In_Frame_Del DEL TCAGGGTTGCTCACT TCAGGGTTGCTCACT - novel TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 TCAGGGTTGCTCACT TCAGGGTTGCTCACT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . CRNN NM_016190 exon3 c.1168_1182del p.390_394del . . 73.0 23.0 149.0 0.0 . 78 . 0.315068 0 none . . PASS Atlas-INDEL ZNF226 7769 hgsc.bcm.edu hg19 19 44680650 44680650 + Frame_Shift_Del DEL T T - novel TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . . NM_001032372 exon6 c.1234delG p.V412fs . . 46.0 19.0 68.0 0.0 . . . 0.413043 0 none . . PASS Atlas-INDEL SYP 6855 hgsc.bcm.edu hg19 X 49050637 49050638 + Frame_Shift_Del DEL TG TG - novel TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 TG TG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . SYP NM_003179 exon4 c.409_410del p.137_137del . . 27.0 20.0 51.0 0.0 . 71 . 0.740741 0 none . . PASS Atlas-INDEL