Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq TVarRat NVarRat dbSNP_Strength dbSNP_AF dbSNP_PopFreq Confidence Algorithm DDI2 84301 hgsc.bcm.edu hg19 1 15957021 15957021 + Missense_Mutation SNP C C T novel TCGA-A4-7288-01A-11D-2136-08 TCGA-A4-7288-11A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e5b1d55b-d7a2-4f48-bf14-67df3cf49d98 b8c7c479-4d3e-45ee-9f6c-8f3d1c372965 . DDI2 NM_032341 exon3 c.C470T p.P157L GCAATCCACCCCT . 92.0 33.0 138.0 0.0 . 38 . . . none . . PASS Atlas-SNP GALE 2582 hgsc.bcm.edu hg19 1 24124297 24124297 + Missense_Mutation SNP G G T novel TCGA-A4-7288-01A-11D-2136-08 TCGA-A4-7288-11A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e5b1d55b-d7a2-4f48-bf14-67df3cf49d98 b8c7c479-4d3e-45ee-9f6c-8f3d1c372965 . GALE NM_000403 exon6 c.C416A p.P139H TACTGGGGGTTCC . 57.0 29.0 93.0 0.0 . 22 . . . none . . PASS Atlas-SNP NUDC 10726 hgsc.bcm.edu hg19 1 27250638 27250638 + Missense_Mutation SNP A A G novel TCGA-A4-7288-01A-11D-2136-08 TCGA-A4-7288-11A-01D-2136-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e5b1d55b-d7a2-4f48-bf14-67df3cf49d98 b8c7c479-4d3e-45ee-9f6c-8f3d1c372965 . NUDC NM_006600 exon2 c.A140G p.E47G GAGGAGAAGAAGG . 74.0 31.0 71.0 0.0 . 15 . . . none . . PASS Atlas-SNP PARS2 25973 hgsc.bcm.edu hg19 1 55224237 55224237 + Missense_Mutation SNP G G T novel TCGA-A4-7288-01A-11D-2136-08 TCGA-A4-7288-11A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e5b1d55b-d7a2-4f48-bf14-67df3cf49d98 b8c7c479-4d3e-45ee-9f6c-8f3d1c372965 . PARS2 NM_152268 exon2 c.C598A p.R200S GGCCACGGAGAAG . 98.0 4.0 127.0 0.0 . 29 . . . none . . PASS Atlas-SNP DOCK7 85440 hgsc.bcm.edu hg19 1 63119666 63119666 + Silent SNP T T C novel TCGA-A4-7288-01A-11D-2136-08 TCGA-A4-7288-11A-01D-2136-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e5b1d55b-d7a2-4f48-bf14-67df3cf49d98 b8c7c479-4d3e-45ee-9f6c-8f3d1c372965 . DOCK7 NM_001271999 exon3 c.A309G p.V103V TTCAGGTACAGCT . 56.0 4.0 69.0 0.0 . 184 . . . none . . PASS Atlas-SNP CTH 1491 hgsc.bcm.edu hg19 1 70877247 70877247 + Missense_Mutation SNP G G C novel TCGA-A4-7288-01A-11D-2136-08 TCGA-A4-7288-11A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e5b1d55b-d7a2-4f48-bf14-67df3cf49d98 b8c7c479-4d3e-45ee-9f6c-8f3d1c372965 . CTH NM_153742 exon1 c.G149C p.G50A AGCAAGGGGCGCC . 83.0 29.0 98.0 0.0 . 48 . . . none . . PASS Atlas-SNP DNTTIP2 30836 hgsc.bcm.edu hg19 1 94337674 94337674 + Missense_Mutation SNP C C A novel TCGA-A4-7288-01A-11D-2136-08 TCGA-A4-7288-11A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e5b1d55b-d7a2-4f48-bf14-67df3cf49d98 b8c7c479-4d3e-45ee-9f6c-8f3d1c372965 . DNTTIP2 NM_014597 exon5 c.G2021T p.R674I TAAAATCTTTTCG . 302.0 135.0 338.0 1.0 . 59 . . . none . . PASS Atlas-SNP SETDB1 9869 hgsc.bcm.edu hg19 1 150936790 150936790 + Missense_Mutation SNP G G A novel TCGA-A4-7288-01A-11D-2136-08 TCGA-A4-7288-11A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e5b1d55b-d7a2-4f48-bf14-67df3cf49d98 b8c7c479-4d3e-45ee-9f6c-8f3d1c372965 . SETDB1 NM_001145415 exon22 c.G3826A p.E1276K GGCAAGGAGCTAC . 63.0 16.0 88.0 0.0 . 204 . . . none . . PASS Atlas-SNP SLC27A3 11000 hgsc.bcm.edu hg19 1 153752431 153752431 + Missense_Mutation SNP A A T novel TCGA-A4-7288-01A-11D-2136-08 TCGA-A4-7288-11A-01D-2136-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e5b1d55b-d7a2-4f48-bf14-67df3cf49d98 b8c7c479-4d3e-45ee-9f6c-8f3d1c372965 . SLC27A3 NM_024330 exon10 c.A2146T p.T716S CCCCTCACAACTG . 40.0 18.0 56.0 0.0 . 42 . . . none . . PASS Atlas-SNP SLC4A5 57835 hgsc.bcm.edu hg19 2 74458396 74458396 + Silent SNP C C A novel TCGA-A4-7288-01A-11D-2136-08 TCGA-A4-7288-11A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e5b1d55b-d7a2-4f48-bf14-67df3cf49d98 b8c7c479-4d3e-45ee-9f6c-8f3d1c372965 . SLC4A5 NM_021196 exon20 c.G2814T p.T938T GATTCCCGTCAGG . 103.0 5.0 131.0 0.0 . 215 . . . none . . PASS Atlas-SNP RANBP2 5903 hgsc.bcm.edu hg19 2 109383218 109383218 + Missense_Mutation SNP A A C novel TCGA-A4-7288-01A-11D-2136-08 TCGA-A4-7288-11A-01D-2136-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e5b1d55b-d7a2-4f48-bf14-67df3cf49d98 b8c7c479-4d3e-45ee-9f6c-8f3d1c372965 . RANBP2 NM_006267 exon20 c.A6223C p.M2075L ATGCTGATGCGAA . 566.0 257.0 697.0 0.0 . 488 . . . none . . PASS Atlas-SNP ZNF804A 91752 hgsc.bcm.edu hg19 2 185802128 185802128 + Missense_Mutation SNP G G C novel TCGA-A4-7288-01A-11D-2136-08 TCGA-A4-7288-11A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e5b1d55b-d7a2-4f48-bf14-67df3cf49d98 b8c7c479-4d3e-45ee-9f6c-8f3d1c372965 . ZNF804A NM_194250 exon4 c.G2005C p.D669H TTAAGTGACAATG . 112.0 44.0 126.0 0.0 . 322 . . . none . . PASS Atlas-SNP ANKRD44 91526 hgsc.bcm.edu hg19 2 198001337 198001337 + Silent SNP C C A novel TCGA-A4-7288-01A-11D-2136-08 TCGA-A4-7288-11A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e5b1d55b-d7a2-4f48-bf14-67df3cf49d98 b8c7c479-4d3e-45ee-9f6c-8f3d1c372965 . ANKRD44 NM_153697 exon4 c.G240T p.R80R AACAGCCCGGTGC . 67.0 30.0 86.0 0.0 . 281 . . . none . . PASS Atlas-SNP DCP1A 55802 hgsc.bcm.edu hg19 3 53376261 53376261 + Silent SNP G G T novel TCGA-A4-7288-01A-11D-2136-08 TCGA-A4-7288-11A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e5b1d55b-d7a2-4f48-bf14-67df3cf49d98 b8c7c479-4d3e-45ee-9f6c-8f3d1c372965 . DCP1A NM_018403 exon3 c.C214A p.R72R TTAGTCGATTCAC . 17.0 11.0 22.0 0.0 . 30 . . . none . . PASS Atlas-SNP MORC1 27136 hgsc.bcm.edu hg19 3 108703606 108703606 + Missense_Mutation SNP C C T novel TCGA-A4-7288-01A-11D-2136-08 TCGA-A4-7288-11A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e5b1d55b-d7a2-4f48-bf14-67df3cf49d98 b8c7c479-4d3e-45ee-9f6c-8f3d1c372965 . MORC1 NM_014429 exon23 c.G2281A p.V761I CTAGAACATCATT . 33.0 12.0 47.0 0.0 . 211 . . . none . . PASS Atlas-SNP PLOD2 5352 hgsc.bcm.edu hg19 3 145803003 145803003 + Silent SNP A A T novel TCGA-A4-7288-01A-11D-2136-08 TCGA-A4-7288-11A-01D-2136-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e5b1d55b-d7a2-4f48-bf14-67df3cf49d98 b8c7c479-4d3e-45ee-9f6c-8f3d1c372965 . PLOD2 NM_182943 exon11 c.T1185A p.V395V CAAAACAACATCT . 54.0 21.0 83.0 0.0 . 81 . . . none . . PASS Atlas-SNP TBL1XR1 79718 hgsc.bcm.edu hg19 3 176767825 176767825 + Missense_Mutation SNP T T C novel TCGA-A4-7288-01A-11D-2136-08 TCGA-A4-7288-11A-01D-2136-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e5b1d55b-d7a2-4f48-bf14-67df3cf49d98 b8c7c479-4d3e-45ee-9f6c-8f3d1c372965 . TBL1XR1 NM_024665 exon7 c.A662G p.D221G GGAACATCTTGCC . 50.0 27.0 54.0 0.0 . 87 . . . none . . PASS Atlas-SNP MAP3K13 9175 hgsc.bcm.edu hg19 3 185191375 185191375 + Silent SNP G G A novel TCGA-A4-7288-01A-11D-2136-08 TCGA-A4-7288-11A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e5b1d55b-d7a2-4f48-bf14-67df3cf49d98 b8c7c479-4d3e-45ee-9f6c-8f3d1c372965 . MAP3K13 NM_004721 exon11 c.G2256A p.G752G AGTGGGGAGGAGC . 185.0 10.0 219.0 0.0 . 209 . . . none . . PASS Atlas-SNP AHSG 197 hgsc.bcm.edu hg19 3 186335047 186335047 + Missense_Mutation SNP G G A novel TCGA-A4-7288-01A-11D-2136-08 TCGA-A4-7288-11A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e5b1d55b-d7a2-4f48-bf14-67df3cf49d98 b8c7c479-4d3e-45ee-9f6c-8f3d1c372965 . AHSG NM_001622 exon4 c.G481A p.V161M AGGGTGGTGCACG . 120.0 63.0 164.0 0.0 . 40 . . . none . . PASS Atlas-SNP NELFA 7469 hgsc.bcm.edu hg19 4 1985129 1985129 + Missense_Mutation SNP C C T novel TCGA-A4-7288-01A-11D-2136-08 TCGA-A4-7288-11A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e5b1d55b-d7a2-4f48-bf14-67df3cf49d98 b8c7c479-4d3e-45ee-9f6c-8f3d1c372965 . . NM_005663 exon11 c.G1537A p.V513M TGTCCACCAGCAT . 180.0 81.0 255.0 0.0 . . . . . none . . PASS Atlas-SNP COMMD8 54951 hgsc.bcm.edu hg19 4 47462163 47462163 + Missense_Mutation SNP C C T novel TCGA-A4-7288-01A-11D-2136-08 TCGA-A4-7288-11A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e5b1d55b-d7a2-4f48-bf14-67df3cf49d98 b8c7c479-4d3e-45ee-9f6c-8f3d1c372965 . COMMD8 NM_017845 exon2 c.G220A p.E74K TTACCTCTTCATC . 76.0 36.0 132.0 0.0 . 15 . . . none . . PASS Atlas-SNP AASDH 132949 hgsc.bcm.edu hg19 4 57204741 57204741 + Missense_Mutation SNP A A G novel TCGA-A4-7288-01A-11D-2136-08 TCGA-A4-7288-11A-01D-2136-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e5b1d55b-d7a2-4f48-bf14-67df3cf49d98 b8c7c479-4d3e-45ee-9f6c-8f3d1c372965 . AASDH NM_181806 exon15 c.T3124C p.S1042P CAGTAGATGCTGC . 66.0 29.0 95.0 0.0 . 101 . . . none . . PASS Atlas-SNP TRMT10A 93587 hgsc.bcm.edu hg19 4 100470297 100470297 + Missense_Mutation SNP T T C novel TCGA-A4-7288-01A-11D-2136-08 TCGA-A4-7288-11A-01D-2136-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e5b1d55b-d7a2-4f48-bf14-67df3cf49d98 b8c7c479-4d3e-45ee-9f6c-8f3d1c372965 . . NM_001134666 exon8 c.A968G p.K323R TCCTGCTTTTCTT . 154.0 83.0 171.0 0.0 . . . . . none . . PASS Atlas-SNP TET2 54790 hgsc.bcm.edu hg19 4 106156045 106156045 + Missense_Mutation SNP T T A novel TCGA-A4-7288-01A-11D-2136-08 TCGA-A4-7288-11A-01D-2136-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e5b1d55b-d7a2-4f48-bf14-67df3cf49d98 b8c7c479-4d3e-45ee-9f6c-8f3d1c372965 . TET2 NM_001127208 exon3 c.T946A p.F316I TGTTCCTTTCAGA . 60.0 36.0 92.0 0.0 . 1762 . . . none . . PASS Atlas-SNP SLC12A7 10723 hgsc.bcm.edu hg19 5 1064225 1064225 + Silent SNP C C G novel TCGA-A4-7288-01A-11D-2136-08 TCGA-A4-7288-11A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e5b1d55b-d7a2-4f48-bf14-67df3cf49d98 b8c7c479-4d3e-45ee-9f6c-8f3d1c372965 . SLC12A7 NM_006598 exon19 c.G2580C p.L860L GGGCAGCAGCATG . 40.0 19.0 32.0 0.0 . 97 . . . none . . PASS Atlas-SNP TNPO1 3842 hgsc.bcm.edu hg19 5 72192301 72192301 + Missense_Mutation SNP A A G novel TCGA-A4-7288-01A-11D-2136-08 TCGA-A4-7288-11A-01D-2136-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e5b1d55b-d7a2-4f48-bf14-67df3cf49d98 b8c7c479-4d3e-45ee-9f6c-8f3d1c372965 . TNPO1 NM_002270 exon19 c.A2160G p.I720M GCCAATATTGGGA . 60.0 22.0 99.0 0.0 . 90 . . . none . . PASS Atlas-SNP TRAF3IP2 10758 hgsc.bcm.edu hg19 6 111912700 111912700 + Missense_Mutation SNP G G T novel TCGA-A4-7288-01A-11D-2136-08 TCGA-A4-7288-11A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e5b1d55b-d7a2-4f48-bf14-67df3cf49d98 b8c7c479-4d3e-45ee-9f6c-8f3d1c372965 . TRAF3IP2 NM_147686 exon2 c.C590A p.T197K TATCCCGTGTCTA . 107.0 12.0 145.0 0.0 . 35 . . . none . . PASS Atlas-SNP LPL 4023 hgsc.bcm.edu hg19 8 19816813 19816813 + Missense_Mutation SNP G G C novel TCGA-A4-7288-01A-11D-2136-08 TCGA-A4-7288-11A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e5b1d55b-d7a2-4f48-bf14-67df3cf49d98 b8c7c479-4d3e-45ee-9f6c-8f3d1c372965 . LPL NM_000237 exon7 c.G1061C p.S354T CTGAGAGTGAAAC . 61.0 26.0 62.0 0.0 . 78 . . . none . . PASS Atlas-SNP EMC2 9694 hgsc.bcm.edu hg19 8 109462083 109462083 + Silent SNP A A G novel TCGA-A4-7288-01A-11D-2136-08 TCGA-A4-7288-11A-01D-2136-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e5b1d55b-d7a2-4f48-bf14-67df3cf49d98 b8c7c479-4d3e-45ee-9f6c-8f3d1c372965 . . NM_014673 exon2 c.A72G p.E24E GAGAGAAGAAAAC . 82.0 36.0 119.0 0.0 . . . . . none . . PASS Atlas-SNP AQP7 364 hgsc.bcm.edu hg19 9 33385805 33385805 + Missense_Mutation SNP G G T novel TCGA-A4-7288-01A-11D-2136-08 TCGA-A4-7288-11A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e5b1d55b-d7a2-4f48-bf14-67df3cf49d98 b8c7c479-4d3e-45ee-9f6c-8f3d1c372965 . AQP7 NM_001170 exon7 c.C585A p.N195K TGCTGGGTTGTTC . 130.0 39.0 198.0 0.0 . 58 . . . none . . PASS Atlas-SNP MUC2 4583 hgsc.bcm.edu hg19 11 1075662 1075662 + Missense_Mutation SNP C C G novel TCGA-A4-7288-01A-11D-2136-08 TCGA-A4-7288-11A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e5b1d55b-d7a2-4f48-bf14-67df3cf49d98 b8c7c479-4d3e-45ee-9f6c-8f3d1c372965 . MUC2 NM_002457 exon2 c.C88G p.R30G AGAACCCGAAACC . 38.0 11.0 47.0 0.0 . 614 . . . none . . PASS Atlas-SNP SLC5A12 159963 hgsc.bcm.edu hg19 11 26725402 26725402 + Silent SNP A A G novel TCGA-A4-7288-01A-11D-2136-08 TCGA-A4-7288-11A-01D-2136-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e5b1d55b-d7a2-4f48-bf14-67df3cf49d98 b8c7c479-4d3e-45ee-9f6c-8f3d1c372965 . SLC5A12 NM_178498 exon5 c.T618C p.H206H CCCAGCATGAGTT . 225.0 91.0 287.0 0.0 . 134 . . . none . . PASS Atlas-SNP TCP11L1 55346 hgsc.bcm.edu hg19 11 33083137 33083137 + Missense_Mutation SNP G G C novel TCGA-A4-7288-01A-11D-2136-08 TCGA-A4-7288-11A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e5b1d55b-d7a2-4f48-bf14-67df3cf49d98 b8c7c479-4d3e-45ee-9f6c-8f3d1c372965 . TCP11L1 NM_001145541 exon7 c.G837C p.K279N TCAGAAGTATAAA . 55.0 22.0 59.0 0.0 . 40 . . . none . . PASS Atlas-SNP NDUFS3 4722 hgsc.bcm.edu hg19 11 47605943 47605943 + Silent SNP G G A novel TCGA-A4-7288-01A-11D-2136-08 TCGA-A4-7288-11A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e5b1d55b-d7a2-4f48-bf14-67df3cf49d98 b8c7c479-4d3e-45ee-9f6c-8f3d1c372965 . NDUFS3 NM_004551 exon7 c.G705A p.L235L TGACCTGAACAGC . 205.0 85.0 305.0 0.0 . 19 . . . none . . PASS Atlas-SNP ATP5L 10632 hgsc.bcm.edu hg19 11 118272388 118272388 + Missense_Mutation SNP A A G novel TCGA-A4-7288-01A-11D-2136-08 TCGA-A4-7288-11A-01D-2136-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e5b1d55b-d7a2-4f48-bf14-67df3cf49d98 b8c7c479-4d3e-45ee-9f6c-8f3d1c372965 . ATP5L NM_006476 exon1 c.A8G p.Q3R TGGCCCAATTTGT . 49.0 20.0 60.0 0.0 . 11 . . . none . . PASS Atlas-SNP TMEM45B 120224 hgsc.bcm.edu hg19 11 129724698 129724698 + Silent SNP A A G novel TCGA-A4-7288-01A-11D-2136-08 TCGA-A4-7288-11A-01D-2136-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e5b1d55b-d7a2-4f48-bf14-67df3cf49d98 b8c7c479-4d3e-45ee-9f6c-8f3d1c372965 . TMEM45B NM_138788 exon3 c.A372G p.A124A TGTGGCAGTATTC . 103.0 39.0 151.0 0.0 . 25 . . . none . . PASS Atlas-SNP IFFO1 25900 hgsc.bcm.edu hg19 12 6649694 6649694 + Silent SNP A A G novel TCGA-A4-7288-01A-11D-2136-08 TCGA-A4-7288-11A-01D-2136-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e5b1d55b-d7a2-4f48-bf14-67df3cf49d98 b8c7c479-4d3e-45ee-9f6c-8f3d1c372965 . IFFO1 NM_001193457 exon10 c.T1671C p.A557A GTCCTCAGCCTCG . 89.0 83.0 137.0 0.0 . 55 . . . none . . PASS Atlas-SNP TAS2R50 259296 hgsc.bcm.edu hg19 12 11139402 11139402 + Nonsense_Mutation SNP C C A novel TCGA-A4-7288-01A-11D-2136-08 TCGA-A4-7288-11A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e5b1d55b-d7a2-4f48-bf14-67df3cf49d98 b8c7c479-4d3e-45ee-9f6c-8f3d1c372965 TAS2R50,NS,carcinoma,0,1 TAS2R50 NM_176890 exon1 c.G58T p.G20X AGTTTCCGAGAAC . 68.0 4.0 75.0 0.0 . 37 . . . none . . PASS Atlas-SNP ARID2 196528 hgsc.bcm.edu hg19 12 46285793 46285793 + Splice_Site SNP G G A novel TCGA-A4-7288-01A-11D-2136-08 TCGA-A4-7288-11A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e5b1d55b-d7a2-4f48-bf14-67df3cf49d98 b8c7c479-4d3e-45ee-9f6c-8f3d1c372965 . ARID2 NM_152641 exon18 c.5062-1G>A . CAAAAAGGATAAG . 59.0 54.0 64.0 0.0 . 311 . . . none . . PASS Atlas-SNP ESPL1 9700 hgsc.bcm.edu hg19 12 53685605 53685605 + Silent SNP A A G novel TCGA-A4-7288-01A-11D-2136-08 TCGA-A4-7288-11A-01D-2136-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e5b1d55b-d7a2-4f48-bf14-67df3cf49d98 b8c7c479-4d3e-45ee-9f6c-8f3d1c372965 . ESPL1 NM_012291 exon26 c.A5652G p.T1884T CCTGACAGTACCA . 140.0 126.0 189.0 0.0 . 158 . . . none . . PASS Atlas-SNP RAB2B 84932 hgsc.bcm.edu hg19 14 21931921 21931921 + Missense_Mutation SNP A A G novel TCGA-A4-7288-01A-11D-2136-08 TCGA-A4-7288-11A-01D-2136-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e5b1d55b-d7a2-4f48-bf14-67df3cf49d98 b8c7c479-4d3e-45ee-9f6c-8f3d1c372965 . RAB2B NM_032846 exon6 c.T368C p.L123P GACTCTAGGTCAC . 85.0 37.0 113.0 0.0 . 19 . . . none . . PASS Atlas-SNP PCK2 5106 hgsc.bcm.edu hg19 14 24568928 24568928 + Missense_Mutation SNP A A C novel TCGA-A4-7288-01A-11D-2136-08 TCGA-A4-7288-11A-01D-2136-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e5b1d55b-d7a2-4f48-bf14-67df3cf49d98 b8c7c479-4d3e-45ee-9f6c-8f3d1c372965 PCK2_ENST00000396973,NS,carcinoma,0,2 PCK2 NM_001018073 exon6 c.A1014C p.E338D CAGTGAAGGTGAG . 118.0 29.0 183.0 0.0 . 66 . . . none . . PASS Atlas-SNP NID2 22795 hgsc.bcm.edu hg19 14 52494036 52494036 + Missense_Mutation SNP C C T novel TCGA-A4-7288-01A-11D-2136-08 TCGA-A4-7288-11A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e5b1d55b-d7a2-4f48-bf14-67df3cf49d98 b8c7c479-4d3e-45ee-9f6c-8f3d1c372965 . NID2 NM_007361 exon12 c.G2557A p.E853K CATCCTCACAGGG . 37.0 15.0 55.0 0.0 . 201 . . . none . . PASS Atlas-SNP PPM1A 5494 hgsc.bcm.edu hg19 14 60750192 60750192 + Missense_Mutation SNP A A T novel TCGA-A4-7288-01A-11D-2136-08 TCGA-A4-7288-11A-01D-2136-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e5b1d55b-d7a2-4f48-bf14-67df3cf49d98 b8c7c479-4d3e-45ee-9f6c-8f3d1c372965 . PPM1A NM_177952 exon2 c.A990T p.R330S ATCCAGACTTGAA . 232.0 94.0 329.0 1.0 . 72 . . . none . . PASS Atlas-SNP UNC79 57578 hgsc.bcm.edu hg19 14 94079328 94079328 + Missense_Mutation SNP G G T novel TCGA-A4-7288-01A-11D-2136-08 TCGA-A4-7288-11A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e5b1d55b-d7a2-4f48-bf14-67df3cf49d98 b8c7c479-4d3e-45ee-9f6c-8f3d1c372965 UNC79,colon,carcinoma,0,2 UNC79 NM_020818 exon27 c.G3409T p.V1137F CTGTACGTCTTAC . 93.0 4.0 79.0 0.0 . 366 . . . none . . PASS Atlas-SNP UBR1 197131 hgsc.bcm.edu hg19 15 43299483 43299483 + Splice_Site SNP C C A novel TCGA-A4-7288-01A-11D-2136-08 TCGA-A4-7288-11A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e5b1d55b-d7a2-4f48-bf14-67df3cf49d98 b8c7c479-4d3e-45ee-9f6c-8f3d1c372965 . UBR1 NM_174916 exon31 c.3210-1G>T . GGGGTGCTACCAA . 19.0 8.0 41.0 0.0 . 124 . . . none . . PASS Atlas-SNP PARP6 56965 hgsc.bcm.edu hg19 15 72556908 72556908 + Missense_Mutation SNP A A G novel TCGA-A4-7288-01A-11D-2136-08 TCGA-A4-7288-11A-01D-2136-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e5b1d55b-d7a2-4f48-bf14-67df3cf49d98 b8c7c479-4d3e-45ee-9f6c-8f3d1c372965 . PARP6 NM_020214 exon7 c.T383C p.L128P AACTGAAGACCCA . 112.0 5.0 121.0 0.0 . 44 . . . none . . PASS Atlas-SNP IDH2 3418 hgsc.bcm.edu hg19 15 90634783 90634783 + Splice_Site SNP A A G novel TCGA-A4-7288-01A-11D-2136-08 TCGA-A4-7288-11A-01D-2136-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e5b1d55b-d7a2-4f48-bf14-67df3cf49d98 b8c7c479-4d3e-45ee-9f6c-8f3d1c372965 . IDH2 NM_002168 exon3 c.207+2T>C . GGCACTACCTTCT . 95.0 12.0 127.0 0.0 . 1372 . . . none . . PASS Atlas-SNP RAB40C 57799 hgsc.bcm.edu hg19 16 677608 677608 + Missense_Mutation SNP T T C novel TCGA-A4-7288-01A-11D-2136-08 TCGA-A4-7288-11A-01D-2136-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e5b1d55b-d7a2-4f48-bf14-67df3cf49d98 b8c7c479-4d3e-45ee-9f6c-8f3d1c372965 . RAB40C NM_021168 exon6 c.T832C p.C278R AGTAACTGCAAGA . 104.0 59.0 111.0 0.0 . 32 . . . none . . PASS Atlas-SNP HS3ST2 9956 hgsc.bcm.edu hg19 16 22926750 22926750 + Missense_Mutation SNP G G A novel TCGA-A4-7288-01A-11D-2136-08 TCGA-A4-7288-11A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e5b1d55b-d7a2-4f48-bf14-67df3cf49d98 b8c7c479-4d3e-45ee-9f6c-8f3d1c372965 HS3ST2,brain,glioma,0,1 HS3ST2 NM_006043 exon2 c.G971A p.R324Q TGCCTCGATGCTT . 328.0 17.0 264.0 0.0 . 59 . . . none . . PASS Atlas-SNP ABCC11 85320 hgsc.bcm.edu hg19 16 48249161 48249161 + Missense_Mutation SNP A A G novel TCGA-A4-7288-01A-11D-2136-08 TCGA-A4-7288-11A-01D-2136-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e5b1d55b-d7a2-4f48-bf14-67df3cf49d98 b8c7c479-4d3e-45ee-9f6c-8f3d1c372965 . ABCC11 NM_033151 exon7 c.T1046C p.I349T AGCTTAATGCAAG . 139.0 42.0 136.0 0.0 . 177 . . . none . . PASS Atlas-SNP INPP5K 51763 hgsc.bcm.edu hg19 17 1400005 1400005 + Silent SNP G G C novel TCGA-A4-7288-01A-11D-2136-08 TCGA-A4-7288-11A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e5b1d55b-d7a2-4f48-bf14-67df3cf49d98 b8c7c479-4d3e-45ee-9f6c-8f3d1c372965 . INPP5K NM_016532 exon9 c.C1056G p.T352T GTCCGAGGTTGAA . 124.0 68.0 135.0 0.0 . 30 . . . none . . PASS Atlas-SNP LHX1 3975 hgsc.bcm.edu hg19 17 35297717 35297717 + Missense_Mutation SNP G G T novel TCGA-A4-7288-01A-11D-2136-08 TCGA-A4-7288-11A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e5b1d55b-d7a2-4f48-bf14-67df3cf49d98 b8c7c479-4d3e-45ee-9f6c-8f3d1c372965 . LHX1 NM_005568 exon2 c.G301T p.G101C TCCACTGGCGAGG . 68.0 16.0 60.0 0.0 . 48 . . . none . . PASS Atlas-SNP ACLY 47 hgsc.bcm.edu hg19 17 40048661 40048661 + Missense_Mutation SNP C C A novel TCGA-A4-7288-01A-11D-2136-08 TCGA-A4-7288-11A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e5b1d55b-d7a2-4f48-bf14-67df3cf49d98 b8c7c479-4d3e-45ee-9f6c-8f3d1c372965 . ACLY NM_001096 exon16 c.G1641T p.E547D CAGGATCTCTTTG . 180.0 68.0 112.0 0.0 . 85 . . . none . . PASS Atlas-SNP HDAC5 10014 hgsc.bcm.edu hg19 17 42158172 42158172 + Missense_Mutation SNP C C A novel TCGA-A4-7288-01A-11D-2136-08 TCGA-A4-7288-11A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e5b1d55b-d7a2-4f48-bf14-67df3cf49d98 b8c7c479-4d3e-45ee-9f6c-8f3d1c372965 . HDAC5 NM_001015053 exon21 c.G2689T p.D897Y CGTTGTCATAGCG . 119.0 44.0 98.0 0.0 . 67 . . . none . . PASS Atlas-SNP AFG3L2 10939 hgsc.bcm.edu hg19 18 12358734 12358734 + Missense_Mutation SNP T T C novel TCGA-A4-7288-01A-11D-2136-08 TCGA-A4-7288-11A-01D-2136-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e5b1d55b-d7a2-4f48-bf14-67df3cf49d98 b8c7c479-4d3e-45ee-9f6c-8f3d1c372965 . AFG3L2 NM_006796 exon8 c.A961G p.M321V ATTCCATGATCTC . 67.0 27.0 74.0 0.0 . 60 . . . none . . PASS Atlas-SNP APC2 10297 hgsc.bcm.edu hg19 19 1468067 1468067 + Silent SNP C C T novel TCGA-A4-7288-01A-11D-2136-08 TCGA-A4-7288-11A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e5b1d55b-d7a2-4f48-bf14-67df3cf49d98 b8c7c479-4d3e-45ee-9f6c-8f3d1c372965 . APC2 NM_005883 exon15 c.C4767T p.P1589P CGAGCCCGAGCCC . 20.0 9.0 20.0 0.0 . 50 . . . none . . PASS Atlas-SNP SUGP1 57794 hgsc.bcm.edu hg19 19 19420931 19420931 + Silent SNP C C T novel TCGA-A4-7288-01A-11D-2136-08 TCGA-A4-7288-11A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e5b1d55b-d7a2-4f48-bf14-67df3cf49d98 b8c7c479-4d3e-45ee-9f6c-8f3d1c372965 . SUGP1 NM_172231 exon3 c.G285A p.K95K CTGCAACTTCAGA . 84.0 36.0 103.0 0.0 . 63 . . . none . . PASS Atlas-SNP IGFLR1 79713 hgsc.bcm.edu hg19 19 36232080 36232080 + Missense_Mutation SNP A A G novel TCGA-A4-7288-01A-11D-2136-08 TCGA-A4-7288-11A-01D-2136-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e5b1d55b-d7a2-4f48-bf14-67df3cf49d98 b8c7c479-4d3e-45ee-9f6c-8f3d1c372965 . IGFLR1 NM_024660 exon2 c.T2C p.M1T GGCCCCATCTGGG . 16.0 6.0 41.0 0.0 . 28 . . . none . . PASS Atlas-SNP ADCK4 79934 hgsc.bcm.edu hg19 19 41220537 41220537 + Missense_Mutation SNP T T C novel TCGA-A4-7288-01A-11D-2136-08 TCGA-A4-7288-11A-01D-2136-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e5b1d55b-d7a2-4f48-bf14-67df3cf49d98 b8c7c479-4d3e-45ee-9f6c-8f3d1c372965 . ADCK4 NM_001142555 exon2 c.A1G p.M1V GCCACATTGCCTG . 52.0 20.0 65.0 0.0 . 92 . . . none . . PASS Atlas-SNP ZNF347 84671 hgsc.bcm.edu hg19 19 53643807 53643807 + Silent SNP A A G novel TCGA-A4-7288-01A-11D-2136-08 TCGA-A4-7288-11A-01D-2136-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e5b1d55b-d7a2-4f48-bf14-67df3cf49d98 b8c7c479-4d3e-45ee-9f6c-8f3d1c372965 . ZNF347 NM_001172675 exon5 c.T2277C p.I759I AGTATGAATTCCC . 265.0 24.0 226.0 0.0 . 87 . . . none . . PASS Atlas-SNP ZNF347 84671 hgsc.bcm.edu hg19 19 53643811 53643811 + Missense_Mutation SNP C C G novel TCGA-A4-7288-01A-11D-2136-08 TCGA-A4-7288-11A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e5b1d55b-d7a2-4f48-bf14-67df3cf49d98 b8c7c479-4d3e-45ee-9f6c-8f3d1c372965 . ZNF347 NM_001172675 exon5 c.G2273C p.G758A TGAATTCCCCGAT . 267.0 28.0 226.0 0.0 . 87 . . . none . . PASS Atlas-SNP RBBP9 10741 hgsc.bcm.edu hg19 20 18471080 18471080 + Missense_Mutation SNP G G A novel TCGA-A4-7288-01A-11D-2136-08 TCGA-A4-7288-11A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e5b1d55b-d7a2-4f48-bf14-67df3cf49d98 b8c7c479-4d3e-45ee-9f6c-8f3d1c372965 . RBBP9 NM_006606 exon4 c.C293T p.A98V GTGTACGCAGACA . 111.0 39.0 135.0 0.0 . 17 . . . none . . PASS Atlas-SNP ENTPD6 955 hgsc.bcm.edu hg19 20 25201971 25201971 + Splice_Site SNP T T A novel TCGA-A4-7288-01A-11D-2136-08 TCGA-A4-7288-11A-01D-2136-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e5b1d55b-d7a2-4f48-bf14-67df3cf49d98 b8c7c479-4d3e-45ee-9f6c-8f3d1c372965 . ENTPD6 NM_001247 exon11 c.1045+2T>A . AGCAGGTACGGGG . 41.0 21.0 52.0 0.0 . 57 . . . none . . PASS Atlas-SNP SGK2 10110 hgsc.bcm.edu hg19 20 42208647 42208647 + Missense_Mutation SNP A A G novel TCGA-A4-7288-01A-11D-2136-08 TCGA-A4-7288-11A-01D-2136-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e5b1d55b-d7a2-4f48-bf14-67df3cf49d98 b8c7c479-4d3e-45ee-9f6c-8f3d1c372965 . SGK2 NM_016276 exon11 c.A1065G p.I355M CCCCATAAACTGG . 107.0 51.0 131.0 0.0 . 50 . . . none . . PASS Atlas-SNP LIMK2 3985 hgsc.bcm.edu hg19 22 31655910 31655910 + Missense_Mutation SNP T T C rs377628882 TCGA-A4-7288-01A-11D-2136-08 TCGA-A4-7288-11A-01D-2136-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e5b1d55b-d7a2-4f48-bf14-67df3cf49d98 b8c7c479-4d3e-45ee-9f6c-8f3d1c372965 . LIMK2 NM_005569 exon5 c.T398C p.M133T CACCCATGTTTGA . 38.0 32.0 95.0 0.0 . 101 . . . weak . . PASS Atlas-SNP BAIAP2L2 80115 hgsc.bcm.edu hg19 22 38482355 38482355 + Missense_Mutation SNP C C G rs113792005 bycluster TCGA-A4-7288-01A-11D-2136-08 TCGA-A4-7288-11A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e5b1d55b-d7a2-4f48-bf14-67df3cf49d98 b8c7c479-4d3e-45ee-9f6c-8f3d1c372965 .,1 BAIAP2L2 NM_025045 exon12 c.G1361C p.R454P GGGGTGCGGGAGC . 2.0 2.0 0.0 0.0 . 39 . . . weak . . PASS Atlas-SNP ATL3 25923 hgsc.bcm.edu hg19 11 63403801 63403802 + Frame_Shift_Ins INS - - A novel TCGA-A4-7288-01A-11D-2136-08 TCGA-A4-7288-11A-01D-2136-08 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e5b1d55b-d7a2-4f48-bf14-67df3cf49d98 b8c7c479-4d3e-45ee-9f6c-8f3d1c372965 . ATL3 NM_015459 exon9 c.856_857insT p.A286fs . . 110.0 44.0 135.0 0.0 . 31 . 0.4 0 none . . PASS Atlas-INDEL RP1 6101 hgsc.bcm.edu hg19 8 55540098 55540099 + Frame_Shift_Ins INS - - T novel TCGA-A4-7288-01A-11D-2136-08 TCGA-A4-7288-11A-01D-2136-08 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e5b1d55b-d7a2-4f48-bf14-67df3cf49d98 b8c7c479-4d3e-45ee-9f6c-8f3d1c372965 . RP1 NM_006269 exon4 c.3656_3657insT p.S1219fs . . 123.0 58.0 139.0 0.0 . 429 . 0.471545 0 none . . PASS Atlas-INDEL CEP135 9662 hgsc.bcm.edu hg19 4 56847415 56847423 + In_Frame_Del DEL TAAGAAAGG TAAGAAAGG - novel TCGA-A4-7288-01A-11D-2136-08 TCGA-A4-7288-11A-01D-2136-08 TAAGAAAGG TAAGAAAGG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e5b1d55b-d7a2-4f48-bf14-67df3cf49d98 b8c7c479-4d3e-45ee-9f6c-8f3d1c372965 . CEP135 NM_025009 exon13 c.1648_1656del p.550_552del . . 56.0 19.0 103.0 0.0 . 115 . 0.339286 0 none . . PASS Atlas-INDEL PLA2G6 8398 hgsc.bcm.edu hg19 22 38536176 38536176 + Frame_Shift_Del DEL G G - novel TCGA-A4-7288-01A-11D-2136-08 TCGA-A4-7288-11A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e5b1d55b-d7a2-4f48-bf14-67df3cf49d98 b8c7c479-4d3e-45ee-9f6c-8f3d1c372965 . PLA2G6 NM_001004426 exon5 c.611delT p.L204fs . . 37.0 30.0 83.0 0.0 . 54 . 0.810811 0 none . . PASS Atlas-INDEL SPPL2C 162540 hgsc.bcm.edu hg19 17 43922606 43922611 + In_Frame_Del DEL GGCCAA GGCCAA - novel TCGA-A4-7288-01A-11D-2136-08 TCGA-A4-7288-11A-01D-2136-08 GGCCAA GGCCAA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e5b1d55b-d7a2-4f48-bf14-67df3cf49d98 b8c7c479-4d3e-45ee-9f6c-8f3d1c372965 . . NM_175882 exon1 c.333_338del p.111_113del . . 95.0 10.0 105.0 0.0 . . . 0.105263 0 none . . PASS Atlas-INDEL COMMD8 54951 hgsc.bcm.edu hg19 4 47462160 47462160 + Splice_Site DEL C C - novel TCGA-A4-7288-01A-11D-2136-08 TCGA-A4-7288-11A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e5b1d55b-d7a2-4f48-bf14-67df3cf49d98 b8c7c479-4d3e-45ee-9f6c-8f3d1c372965 . COMMD8 NM_017845 exon3 c.222+2G>- . . . 72.0 33.0 129.0 0.0 . 15 . 0.458333 0 none . . PASS Atlas-INDEL C10orf71 118461 hgsc.bcm.edu hg19 10 50530974 50530974 + Frame_Shift_Del DEL G G - novel TCGA-A4-7288-01A-11D-2136-08 TCGA-A4-7288-11A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e5b1d55b-d7a2-4f48-bf14-67df3cf49d98 b8c7c479-4d3e-45ee-9f6c-8f3d1c372965 . C10orf71 NM_001135196 exon3 c.383delT p.V128fs . . 122.0 44.0 165.0 0.0 . 179 . 0.360656 0 none . . PASS Atlas-INDEL HNRNPC 3183 hgsc.bcm.edu hg19 14 21679712 21679713 + Frame_Shift_Del DEL AT AT - novel TCGA-A4-7288-01A-11D-2136-08 TCGA-A4-7288-11A-01D-2136-08 AT AT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e5b1d55b-d7a2-4f48-bf14-67df3cf49d98 b8c7c479-4d3e-45ee-9f6c-8f3d1c372965 . HNRNPC NM_031314 exon8 c.690_691del p.230_231del . . 31.0 16.0 22.0 0.0 . 31 . 0.516129 0 none . . PASS Atlas-INDEL