Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
NCOA1	8648	hgsc.bcm.edu	hg19	2	24991159	24991159	+	Silent	SNP	C	C	T	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	NCOA1	NM_003743	exon21	c.C4225T	p.L1409L	CCTTACCTGAACC	.	141.0	27.0	159.0	0.0	.	210	.	.	.	none	.	.	PASS	Atlas-SNP
GPATCH11	253635	hgsc.bcm.edu	hg19	2	37319335	37319335	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	.	NM_174931	exon6	c.A465C	p.E155D	AGATGAAATGAAG	.	27.0	9.0	29.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
GPATCH11	253635	hgsc.bcm.edu	hg19	2	37319336	37319336	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	.	NM_174931	exon6	c.A466T	p.M156L	GATGAAATGAAGC	.	28.0	9.0	28.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
RTKN	6242	hgsc.bcm.edu	hg19	2	74657398	74657398	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	RTKN	NM_001015055	exon5	c.T526C	p.F176L	TCTGAAAGGAGAT	.	44.0	8.0	49.0	0.0	.	80	.	.	.	none	.	.	PASS	Atlas-SNP
SPOPL	339745	hgsc.bcm.edu	hg19	2	139308572	139308572	+	Silent	SNP	A	A	G	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	SPOPL	NM_001001664	exon4	c.A300G	p.A100A	TCGAGCAAAATTC	.	119.0	32.0	103.0	0.0	.	54	.	.	.	none	.	.	PASS	Atlas-SNP
KYNU	8942	hgsc.bcm.edu	hg19	2	143718222	143718222	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	KYNU	NM_001199241	exon9	c.C612G	p.I204M	GGATATCCTTGAA	.	93.0	15.0	87.0	0.0	.	110	.	.	.	none	.	.	PASS	Atlas-SNP
LY75	4065	hgsc.bcm.edu	hg19	2	160665004	160665004	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	LY75	NM_002349	exon33	c.A4778G	p.N1593S	GTAATGTTATTAT	.	82.0	21.0	80.0	0.0	.	151	.	.	.	none	.	.	PASS	Atlas-SNP
CCNG2	901	hgsc.bcm.edu	hg19	4	78082688	78082688	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	CCNG2	NM_004354	exon5	c.C583T	p.R195X	AACTGCCGACTCA	.	57.0	9.0	64.0	0.0	.	27	.	.	.	none	.	.	PASS	Atlas-SNP
SYNPO2	171024	hgsc.bcm.edu	hg19	4	119952706	119952706	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	SYNPO2	NM_001128934	exon4	c.A2776T	p.N926Y	GCCTATAATCCTA	.	108.0	30.0	128.0	0.0	.	353	.	.	.	none	.	.	PASS	Atlas-SNP
FTMT	94033	hgsc.bcm.edu	hg19	5	121188229	121188229	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	FTMT	NM_177478	exon1	c.G571A	p.D191N	TTGTGCGATTTCC	.	217.0	55.0	237.0	0.0	.	71	.	.	.	none	.	.	PASS	Atlas-SNP
TRIM52	84851	hgsc.bcm.edu	hg19	5	180687083	180687083	+	Silent	SNP	G	G	T	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	TRIM52	NM_032765	exon1	c.C732A	p.A244A	ACAGATGGCCTCT	.	155.0	39.0	257.0	0.0	.	20	.	.	.	none	.	.	PASS	Atlas-SNP
BCLAF1	9774	hgsc.bcm.edu	hg19	6	136596669	136596669	+	Splice_Site	SNP	C	C	T	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	BCLAF1	NM_014739	exon7	c.1852+1G>A	.	AGCATACCTTTAA	.	112.0	8.0	108.0	0.0	.	203	.	.	.	none	.	.	PASS	Atlas-SNP
MEOX2	4223	hgsc.bcm.edu	hg19	7	15725809	15725809	+	Silent	SNP	G	G	A	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	MEOX2,caecum,carcinoma,0,1	MEOX2	NM_005924	exon1	c.C219T	p.H73H	GTGGTGGTGGTGG	.	17.0	8.0	16.0	2.0	.	68	.	.	.	none	.	.	PASS	Atlas-SNP
DDX56	54606	hgsc.bcm.edu	hg19	7	44607797	44607797	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	DDX56	NM_019082	exon12	c.A1409C	p.D470A	TGGAGGTCCCTAG	.	53.0	9.0	57.0	0.0	.	36	.	.	.	none	.	.	PASS	Atlas-SNP
RELN	5649	hgsc.bcm.edu	hg19	7	103234873	103234873	+	Silent	SNP	G	G	C	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	RELN	NM_173054	exon26	c.C3606G	p.P1202P	GAACACGGGCTGC	.	341.0	22.0	334.0	0.0	.	593	.	.	.	none	.	.	PASS	Atlas-SNP
PRSS55	203074	hgsc.bcm.edu	hg19	8	10388999	10388999	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	PRSS55	NM_001197020	exon3	c.C542G	p.P181R	CGCAGCCCGGCCC	.	102.0	11.0	110.0	0.0	.	67	.	.	.	none	.	.	PASS	Atlas-SNP
COL22A1	169044	hgsc.bcm.edu	hg19	8	139790649	139790649	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	COL22A1,NS,malignant_melanoma,0,1	COL22A1	NM_152888	exon15	c.G1705A	p.G569R	GGGGCCCCTGCAG	.	59.0	21.0	55.0	0.0	.	390	.	.	.	none	.	.	PASS	Atlas-SNP
ANKS6	203286	hgsc.bcm.edu	hg19	9	101533259	101533259	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	ANKS6	NM_173551	exon10	c.T1891A	p.F631I	GGTTGAAGTTTCC	.	56.0	13.0	56.0	0.0	.	59	.	.	.	none	.	.	PASS	Atlas-SNP
ALG2	85365	hgsc.bcm.edu	hg19	9	101980774	101980774	+	Silent	SNP	G	G	A	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	ALG2	NM_033087	exon2	c.C693T	p.I231I	TCTGTTGATGGAG	.	98.0	25.0	127.0	0.0	.	37	.	.	.	none	.	.	PASS	Atlas-SNP
CCKBR	887	hgsc.bcm.edu	hg19	11	6281226	6281226	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	CCKBR	NM_176875	exon1	c.G68C	p.R23P	TGTGCCGCCCGGG	.	26.0	7.0	23.0	0.0	.	232	.	.	.	none	.	.	PASS	Atlas-SNP
DCP1B	196513	hgsc.bcm.edu	hg19	12	2062350	2062350	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	DCP1B,bladder,carcinoma,0,13	DCP1B	NM_152640	exon7	c.G756C	p.Q252H	CTGCTGCTGGTGG	.	97.0	5.0	73.0	1.0	.	63	.	.	.	none	.	.	PASS	Atlas-SNP
RIMKLB	57494	hgsc.bcm.edu	hg19	12	8906507	8906507	+	Missense_Mutation	SNP	G	G	T	rs369058701	alternate_allele	TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	RIMKLB	NM_020734	exon6	c.G515T	p.R172L	TGGCTCGAGATAA	.	95.0	5.0	95.0	0.0	.	47	.	.	.	alt	.	.	PASS	Atlas-SNP
EPS8	2059	hgsc.bcm.edu	hg19	12	15784493	15784493	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	EPS8	NM_004447	exon18	c.G1927T	p.A643S	CAGGTGCTGGAGT	.	173.0	28.0	150.0	0.0	.	70	.	.	.	none	.	.	PASS	Atlas-SNP
SCAF11	9169	hgsc.bcm.edu	hg19	12	46320210	46320210	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	SCAF11	NM_004719	exon11	c.C3274A	p.Q1092K	CATTCTGATCTTT	.	145.0	23.0	133.0	0.0	.	145	.	.	.	none	.	.	PASS	Atlas-SNP
INHBC	3626	hgsc.bcm.edu	hg19	12	57828750	57828750	+	Silent	SNP	A	A	C	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	INHBC	NM_005538	exon1	c.A81C	p.P27P	GTGTCCAGCATGT	.	97.0	15.0	67.0	0.0	.	28	.	.	.	none	.	.	PASS	Atlas-SNP
ALDH1L2	160428	hgsc.bcm.edu	hg19	12	105428135	105428135	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	ALDH1L2	NM_001034173	exon19	c.T2187G	p.I729M	AGCAGCAATACAG	.	91.0	18.0	95.0	0.0	.	71	.	.	.	none	.	.	PASS	Atlas-SNP
RNF6	6049	hgsc.bcm.edu	hg19	13	26788332	26788332	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	RNF6	NM_183043	exon5	c.A1687T	p.S563C	TGTCACTGTTTCG	.	185.0	50.0	198.0	0.0	.	68	.	.	.	none	.	.	PASS	Atlas-SNP
TEP1	7011	hgsc.bcm.edu	hg19	14	20857434	20857434	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	TEP1	NM_007110	exon17	c.G2488A	p.D830N	TCACATCATTGGG	.	77.0	17.0	141.0	0.0	.	224	.	.	.	none	.	.	PASS	Atlas-SNP
ATP10A	57194	hgsc.bcm.edu	hg19	15	25959389	25959389	+	Splice_Site	SNP	C	C	G	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	ATP10A	NM_024490	exon11	c.1777-1G>C	.	CCTCACCTGCAAG	.	43.0	5.0	79.0	0.0	.	270	.	.	.	none	.	.	PASS	Atlas-SNP
ALDH3A2	224	hgsc.bcm.edu	hg19	17	19575183	19575183	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	ALDH3A2	NM_001031806	exon9	c.T1357A	p.F453I	GGAAAATTTTTTC	.	298.0	65.0	236.0	0.0	.	41	.	.	.	none	.	.	PASS	Atlas-SNP
PROCA1	147011	hgsc.bcm.edu	hg19	17	27038593	27038593	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	PROCA1	NM_152465	exon1	c.G86A	p.C29Y	CCGCGGCATCTGC	.	86.0	13.0	87.0	0.0	.	28	.	.	.	none	.	.	PASS	Atlas-SNP
ENGASE	64772	hgsc.bcm.edu	hg19	17	77079593	77079593	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	ENGASE	NM_001042573	exon9	c.C1172G	p.P391R	ATCTGCCCACACA	.	78.0	11.0	52.0	0.0	.	55	.	.	.	none	.	.	PASS	Atlas-SNP
AATK	9625	hgsc.bcm.edu	hg19	17	79094952	79094952	+	Silent	SNP	A	A	T	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	AATK	NM_001080395	exon11	c.T2784A	p.S928S	CCCTCCAGAGGGG	.	27.0	7.0	29.0	0.0	.	102	.	.	.	none	.	.	PASS	Atlas-SNP
CSRP2BP	57325	hgsc.bcm.edu	hg19	20	18142850	18142850	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	CSRP2BP	NM_020536	exon5	c.C1069G	p.P357A	CTGATTCCAGATG	.	629.0	129.0	596.0	0.0	.	80	.	.	.	none	.	.	PASS	Atlas-SNP
HM13	81502	hgsc.bcm.edu	hg19	20	30137040	30137040	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	HM13	NM_178581	exon6	c.G571A	p.A191T	GGCCTGGCCTTCT	.	349.0	63.0	326.0	0.0	.	52	.	.	.	none	.	.	PASS	Atlas-SNP
NCOA6	23054	hgsc.bcm.edu	hg19	20	33345756	33345756	+	Silent	SNP	T	T	C	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	NCOA6,bladder,carcinoma,0,2	NCOA6	NM_014071	exon7	c.A795G	p.Q265Q	TTGTTGTTGCTGC	.	89.0	4.0	67.0	1.0	.	219	.	.	.	none	.	.	PASS	Atlas-SNP
CHD6	84181	hgsc.bcm.edu	hg19	20	40080522	40080522	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	CHD6	NM_032221	exon22	c.G3467C	p.W1156S	AGTTCCCAAATGA	.	279.0	45.0	213.0	0.0	.	312	.	.	.	none	.	.	PASS	Atlas-SNP
PARD6B	84612	hgsc.bcm.edu	hg19	20	49367023	49367023	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	PARD6B	NM_032521	exon3	c.T1117C	p.X373R	ACATTATGAAACC	.	62.0	11.0	59.0	0.0	.	31	.	.	.	none	.	.	PASS	Atlas-SNP
ZNRF3	84133	hgsc.bcm.edu	hg19	22	29445639	29445639	+	Silent	SNP	C	C	A	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	ZNRF3,NS,carcinoma,0,1	ZNRF3	NM_001206998	exon8	c.C1470A	p.L490L	TAGCCTCGCACCC	.	25.0	2.0	35.0	0.0	.	75	.	.	.	none	.	.	PASS	Atlas-SNP
BHLHB9	80823	hgsc.bcm.edu	hg19	X	102004858	102004858	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	BHLHB9	NM_001142530	exon2	c.G935C	p.C312S	TTGCTTGTCCTTG	.	62.0	19.0	67.0	0.0	.	60	.	.	.	none	.	.	PASS	Atlas-SNP
SLC17A6	57084	hgsc.bcm.edu	hg19	11	22363111	22363112	+	Frame_Shift_Del	DEL	GA	GA	-	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	GA	GA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	SLC17A6	NM_020346	exon2	c.123_124del	p.41_42del	.	.	112.0	17.0	113.0	0.0	.	135	.	0.151786	0	none	.	.	PASS	Atlas-INDEL
FKBP9	11328	hgsc.bcm.edu	hg19	7	33014881	33014881	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	FKBP9	NM_007270	exon3	c.454delA	p.T152fs	.	.	95.0	17.0	111.0	0.0	.	335	.	0.178947	0	none	.	.	PASS	Atlas-INDEL
MORN3	283385	hgsc.bcm.edu	hg19	12	122107353	122107353	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	MORN3	NM_173855	exon1	c.38delT	p.L13fs	.	.	236.0	42.0	203.0	0.0	.	20	.	0.177966	0	none	.	.	PASS	Atlas-INDEL