Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
INADL	10207	hgsc.bcm.edu	hg19	1	62288639	62288639	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2Z-A9JQ-01A-11D-A42J-10	TCGA-2Z-A9JQ-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c0bed76f-49c1-44d5-b9eb-c8ef1b6c63bc	72b21503-f17e-4728-8b9c-d0b550371302	INADL,NS,carcinoma,0,1	INADL	NM_176877	exon15	c.G1706C	p.R569T	CTCTGAGGCTTGG	.	92.0	51.0	89.0	0.0	.	179	.	.	.	none	.	.	PASS	Atlas-SNP
NOTCH2	4853	hgsc.bcm.edu	hg19	1	120464974	120464974	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Z-A9JQ-01A-11D-A42J-10	TCGA-2Z-A9JQ-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c0bed76f-49c1-44d5-b9eb-c8ef1b6c63bc	72b21503-f17e-4728-8b9c-d0b550371302	.	NOTCH2	NM_024408	exon28	c.G5098T	p.A1700S	GTTTTGCCATGAT	.	84.0	23.0	89.0	0.0	.	348	.	.	.	none	.	.	PASS	Atlas-SNP
NOTCH2	4853	hgsc.bcm.edu	hg19	1	120464975	120464975	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Z-A9JQ-01A-11D-A42J-10	TCGA-2Z-A9JQ-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c0bed76f-49c1-44d5-b9eb-c8ef1b6c63bc	72b21503-f17e-4728-8b9c-d0b550371302	.	NOTCH2	NM_024408	exon28	c.G5097A	p.M1699I	TTTTGCCATGATT	.	83.0	23.0	90.0	0.0	.	348	.	.	.	none	.	.	PASS	Atlas-SNP
ILF2	3608	hgsc.bcm.edu	hg19	1	153636583	153636583	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Z-A9JQ-01A-11D-A42J-10	TCGA-2Z-A9JQ-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c0bed76f-49c1-44d5-b9eb-c8ef1b6c63bc	72b21503-f17e-4728-8b9c-d0b550371302	.	ILF2	NM_004515	exon10	c.T680C	p.L227P	TCCTTCAGTAGTC	.	203.0	72.0	240.0	0.0	.	25	.	.	.	none	.	.	PASS	Atlas-SNP
ILF2	3608	hgsc.bcm.edu	hg19	1	153636584	153636584	+	Silent	SNP	G	G	A	novel		TCGA-2Z-A9JQ-01A-11D-A42J-10	TCGA-2Z-A9JQ-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c0bed76f-49c1-44d5-b9eb-c8ef1b6c63bc	72b21503-f17e-4728-8b9c-d0b550371302	.	ILF2	NM_004515	exon10	c.C679T	p.L227L	CCTTCAGTAGTCT	.	206.0	74.0	239.0	0.0	.	25	.	.	.	none	.	.	PASS	Atlas-SNP
PEAR1	375033	hgsc.bcm.edu	hg19	1	156876627	156876627	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Z-A9JQ-01A-11D-A42J-10	TCGA-2Z-A9JQ-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c0bed76f-49c1-44d5-b9eb-c8ef1b6c63bc	72b21503-f17e-4728-8b9c-d0b550371302	.	PEAR1	NM_001080471	exon6	c.C599T	p.P200L	GCGATCCCCAGAC	.	45.0	16.0	87.0	0.0	.	118	.	.	.	none	.	.	PASS	Atlas-SNP
C1orf106	55765	hgsc.bcm.edu	hg19	1	200869255	200869255	+	Silent	SNP	G	G	A	novel		TCGA-2Z-A9JQ-01A-11D-A42J-10	TCGA-2Z-A9JQ-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c0bed76f-49c1-44d5-b9eb-c8ef1b6c63bc	72b21503-f17e-4728-8b9c-d0b550371302	.	C1orf106	NM_018265	exon4	c.G501A	p.A167A	GCCAGCGGAGTAT	.	137.0	61.0	239.0	0.0	.	59	.	.	.	none	.	.	PASS	Atlas-SNP
ZFP36L2	678	hgsc.bcm.edu	hg19	2	43452438	43452438	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Z-A9JQ-01A-11D-A42J-10	TCGA-2Z-A9JQ-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c0bed76f-49c1-44d5-b9eb-c8ef1b6c63bc	72b21503-f17e-4728-8b9c-d0b550371302	.	ZFP36L2	NM_006887	exon2	c.A505G	p.K169E	CGTACTTGCACGT	.	26.0	16.0	56.0	0.0	.	56	.	.	.	none	.	.	PASS	Atlas-SNP
SOCS5	9655	hgsc.bcm.edu	hg19	2	46986775	46986775	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Z-A9JQ-01A-11D-A42J-10	TCGA-2Z-A9JQ-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c0bed76f-49c1-44d5-b9eb-c8ef1b6c63bc	72b21503-f17e-4728-8b9c-d0b550371302	.	SOCS5	NM_144949	exon2	c.T1106C	p.L369P	ACTGCCTCGTGCC	.	132.0	65.0	128.0	0.0	.	62	.	.	.	none	.	.	PASS	Atlas-SNP
DCTN1	1639	hgsc.bcm.edu	hg19	2	74597421	74597421	+	Silent	SNP	C	C	T	novel		TCGA-2Z-A9JQ-01A-11D-A42J-10	TCGA-2Z-A9JQ-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c0bed76f-49c1-44d5-b9eb-c8ef1b6c63bc	72b21503-f17e-4728-8b9c-d0b550371302	.	DCTN1	NM_004082	exon12	c.G1179A	p.K393K	CATGAGCTTCTGG	.	39.0	21.0	59.0	0.0	.	110	.	.	.	none	.	.	PASS	Atlas-SNP
VWA3B	200403	hgsc.bcm.edu	hg19	2	98844793	98844793	+	Silent	SNP	C	C	T	novel		TCGA-2Z-A9JQ-01A-11D-A42J-10	TCGA-2Z-A9JQ-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c0bed76f-49c1-44d5-b9eb-c8ef1b6c63bc	72b21503-f17e-4728-8b9c-d0b550371302	.	VWA3B	NM_144992	exon15	c.C2148T	p.S716S	AGACAGCAAGTGA	.	40.0	12.0	50.0	0.0	.	138	.	.	.	none	.	.	PASS	Atlas-SNP
MAP3K19	80122	hgsc.bcm.edu	hg19	2	135779307	135779307	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-2Z-A9JQ-01A-11D-A42J-10	TCGA-2Z-A9JQ-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c0bed76f-49c1-44d5-b9eb-c8ef1b6c63bc	72b21503-f17e-4728-8b9c-d0b550371302	.	.	NM_025052	exon2	c.T116A	p.L39X	CTTTGCAAGATGA	.	64.0	25.0	67.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179435106	179435106	+	Silent	SNP	A	A	T	novel		TCGA-2Z-A9JQ-01A-11D-A42J-10	TCGA-2Z-A9JQ-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c0bed76f-49c1-44d5-b9eb-c8ef1b6c63bc	72b21503-f17e-4728-8b9c-d0b550371302	.	TTN	NM_001267550	exon326	c.T75753A	p.V25251V	AGTCCAAACTAAG	.	79.0	35.0	31.0	0.0	.	18412	.	.	.	none	.	.	PASS	Atlas-SNP
CUL3	8452	hgsc.bcm.edu	hg19	2	225378264	225378264	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-2Z-A9JQ-01A-11D-A42J-10	TCGA-2Z-A9JQ-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c0bed76f-49c1-44d5-b9eb-c8ef1b6c63bc	72b21503-f17e-4728-8b9c-d0b550371302	.	CUL3	NM_001257198	exon5	c.G649T	p.E217X	ACATTTCCAAAAA	.	148.0	54.0	190.0	0.0	.	96	.	.	.	none	.	.	PASS	Atlas-SNP
AQP12B	653437	hgsc.bcm.edu	hg19	2	241622010	241622010	+	Missense_Mutation	SNP	G	G	A	rs374703341		TCGA-2Z-A9JQ-01A-11D-A42J-10	TCGA-2Z-A9JQ-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c0bed76f-49c1-44d5-b9eb-c8ef1b6c63bc	72b21503-f17e-4728-8b9c-d0b550371302	.	AQP12B	NM_001102467	exon1	c.C245T	p.A82V	CCGTGCGCCAGGA	.	89.0	4.0	155.0	0.0	.	33	.	.	.	weak	.	.	PASS	Atlas-SNP
SCN11A	11280	hgsc.bcm.edu	hg19	3	38892111	38892111	+	Silent	SNP	G	G	A	novel		TCGA-2Z-A9JQ-01A-11D-A42J-10	TCGA-2Z-A9JQ-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c0bed76f-49c1-44d5-b9eb-c8ef1b6c63bc	72b21503-f17e-4728-8b9c-d0b550371302	.	SCN11A	NM_014139	exon25	c.C4188T	p.S1396S	AAGGATGGATTTC	.	86.0	34.0	35.0	0.0	.	296	.	.	.	none	.	.	PASS	Atlas-SNP
QARS	5859	hgsc.bcm.edu	hg19	3	49136634	49136634	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Z-A9JQ-01A-11D-A42J-10	TCGA-2Z-A9JQ-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c0bed76f-49c1-44d5-b9eb-c8ef1b6c63bc	72b21503-f17e-4728-8b9c-d0b550371302	.	QARS	NM_005051	exon18	c.G1667T	p.C556F	CGCACACAGGCTT	.	70.0	24.0	77.0	0.0	.	55	.	.	.	none	.	.	PASS	Atlas-SNP
CACNA1D	776	hgsc.bcm.edu	hg19	3	53699775	53699775	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-2Z-A9JQ-01A-11D-A42J-10	TCGA-2Z-A9JQ-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c0bed76f-49c1-44d5-b9eb-c8ef1b6c63bc	72b21503-f17e-4728-8b9c-d0b550371302	.	CACNA1D	NM_001128840	exon6	c.T855G	p.Y285X	AATCTATGCTATT	.	94.0	36.0	82.0	0.0	.	324	.	.	.	none	.	.	PASS	Atlas-SNP
ARHGAP31	57514	hgsc.bcm.edu	hg19	3	119133437	119133437	+	Silent	SNP	C	C	T	novel		TCGA-2Z-A9JQ-01A-11D-A42J-10	TCGA-2Z-A9JQ-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c0bed76f-49c1-44d5-b9eb-c8ef1b6c63bc	72b21503-f17e-4728-8b9c-d0b550371302	.	ARHGAP31	NM_020754	exon12	c.C2661T	p.D887D	TTCAGACTGTGAC	.	112.0	50.0	91.0	0.0	.	175	.	.	.	none	.	.	PASS	Atlas-SNP
PLS1	5357	hgsc.bcm.edu	hg19	3	142383090	142383090	+	Missense_Mutation	SNP	G	G	T	rs373717334	alternate_allele	TCGA-2Z-A9JQ-01A-11D-A42J-10	TCGA-2Z-A9JQ-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c0bed76f-49c1-44d5-b9eb-c8ef1b6c63bc	72b21503-f17e-4728-8b9c-d0b550371302	PLS1,NS,carcinoma,0,2	PLS1	NM_001172312	exon2	c.G11T	p.S4I	AAAACAGTACTAC	.	192.0	81.0	165.0	0.0	.	71	.	.	.	alt	.	.	PASS	Atlas-SNP
TACC3	10460	hgsc.bcm.edu	hg19	4	1729484	1729484	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2Z-A9JQ-01A-11D-A42J-10	TCGA-2Z-A9JQ-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c0bed76f-49c1-44d5-b9eb-c8ef1b6c63bc	72b21503-f17e-4728-8b9c-d0b550371302	.	TACC3	NM_006342	exon4	c.C355G	p.Q119E	ATTCTACAGAAAC	.	115.0	63.0	178.0	0.0	.	69	.	.	.	none	.	.	PASS	Atlas-SNP
TACC3	10460	hgsc.bcm.edu	hg19	4	1729485	1729485	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2Z-A9JQ-01A-11D-A42J-10	TCGA-2Z-A9JQ-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c0bed76f-49c1-44d5-b9eb-c8ef1b6c63bc	72b21503-f17e-4728-8b9c-d0b550371302	.	TACC3	NM_006342	exon4	c.A356T	p.Q119L	TTCTACAGAAACC	.	117.0	63.0	181.0	0.0	.	69	.	.	.	none	.	.	PASS	Atlas-SNP
ATP10D	57205	hgsc.bcm.edu	hg19	4	47574963	47574963	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Z-A9JQ-01A-11D-A42J-10	TCGA-2Z-A9JQ-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c0bed76f-49c1-44d5-b9eb-c8ef1b6c63bc	72b21503-f17e-4728-8b9c-d0b550371302	.	ATP10D	NM_020453	exon18	c.G3315T	p.W1105C	ACACTGGTGTTAT	.	55.0	18.0	42.0	0.0	.	168	.	.	.	none	.	.	PASS	Atlas-SNP
ANKRD17	26057	hgsc.bcm.edu	hg19	4	74027050	74027050	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Z-A9JQ-01A-11D-A42J-10	TCGA-2Z-A9JQ-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c0bed76f-49c1-44d5-b9eb-c8ef1b6c63bc	72b21503-f17e-4728-8b9c-d0b550371302	ANKRD17,NS,carcinoma,0,1	ANKRD17	NM_198889	exon3	c.C563A	p.S188Y	GCCGTGGACAATT	.	82.0	37.0	61.0	0.0	.	214	.	.	.	none	.	.	PASS	Atlas-SNP
FRAS1	80144	hgsc.bcm.edu	hg19	4	79387543	79387543	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Z-A9JQ-01A-11D-A42J-10	TCGA-2Z-A9JQ-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c0bed76f-49c1-44d5-b9eb-c8ef1b6c63bc	72b21503-f17e-4728-8b9c-d0b550371302	.	FRAS1	NM_025074	exon50	c.C7211T	p.S2404F	CTGTTTCTGATGG	.	195.0	78.0	124.0	0.0	.	779	.	.	.	none	.	.	PASS	Atlas-SNP
POU4F2	5458	hgsc.bcm.edu	hg19	4	147560484	147560484	+	Silent	SNP	C	C	A	novel		TCGA-2Z-A9JQ-01A-11D-A42J-10	TCGA-2Z-A9JQ-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c0bed76f-49c1-44d5-b9eb-c8ef1b6c63bc	72b21503-f17e-4728-8b9c-d0b550371302	.	POU4F2	NM_004575	exon1	c.C192A	p.G64G	CGGCGGCGGCGGC	.	70.0	5.0	117.0	0.0	.	83	.	.	.	none	.	.	PASS	Atlas-SNP
TERT	7015	hgsc.bcm.edu	hg19	5	1258735	1258735	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Z-A9JQ-01A-11D-A42J-10	TCGA-2Z-A9JQ-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c0bed76f-49c1-44d5-b9eb-c8ef1b6c63bc	72b21503-f17e-4728-8b9c-d0b550371302	.	TERT	NM_198253	exon13	c.A3010G	p.I1004V	GGAGGATCTTGTA	.	43.0	14.0	66.0	0.0	.	2594	.	.	.	none	.	.	PASS	Atlas-SNP
TERT	7015	hgsc.bcm.edu	hg19	5	1258736	1258736	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2Z-A9JQ-01A-11D-A42J-10	TCGA-2Z-A9JQ-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c0bed76f-49c1-44d5-b9eb-c8ef1b6c63bc	72b21503-f17e-4728-8b9c-d0b550371302	.	TERT	NM_198253	exon13	c.G3009C	p.K1003N	GAGGATCTTGTAG	.	44.0	14.0	66.0	0.0	.	2594	.	.	.	none	.	.	PASS	Atlas-SNP
SLC45A2	51151	hgsc.bcm.edu	hg19	5	33984582	33984582	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Z-A9JQ-01A-11D-A42J-10	TCGA-2Z-A9JQ-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c0bed76f-49c1-44d5-b9eb-c8ef1b6c63bc	72b21503-f17e-4728-8b9c-d0b550371302	.	SLC45A2	NM_016180	exon1	c.T107C	p.I36T	TGCATGATGAGTC	.	22.0	9.0	18.0	0.0	.	100	.	.	.	none	.	.	PASS	Atlas-SNP
LOX	4015	hgsc.bcm.edu	hg19	5	121413349	121413349	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2Z-A9JQ-01A-11D-A42J-10	TCGA-2Z-A9JQ-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c0bed76f-49c1-44d5-b9eb-c8ef1b6c63bc	72b21503-f17e-4728-8b9c-d0b550371302	.	LOX	NM_002317	exon1	c.G332C	p.G111A	GTGACTCCAGATG	.	79.0	33.0	94.0	0.0	.	29	.	.	.	none	.	.	PASS	Atlas-SNP
PCDHA2	56146	hgsc.bcm.edu	hg19	5	140176343	140176343	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2Z-A9JQ-01A-11D-A42J-10	TCGA-2Z-A9JQ-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c0bed76f-49c1-44d5-b9eb-c8ef1b6c63bc	72b21503-f17e-4728-8b9c-d0b550371302	.	PCDHA2	NM_031495	exon1	c.C1794G	p.D598E	AGTGGACGCTGAC	.	84.0	33.0	142.0	0.0	.	404	.	.	.	none	.	.	PASS	Atlas-SNP
IRF4	3662	hgsc.bcm.edu	hg19	6	401489	401489	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Z-A9JQ-01A-11D-A42J-10	TCGA-2Z-A9JQ-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c0bed76f-49c1-44d5-b9eb-c8ef1b6c63bc	72b21503-f17e-4728-8b9c-d0b550371302	.	IRF4	NM_002460	exon7	c.C811T	p.P271S	TCCAGCCCCGAGG	.	85.0	30.0	106.0	0.0	.	65	.	.	.	none	.	.	PASS	Atlas-SNP
IBTK	25998	hgsc.bcm.edu	hg19	6	82906099	82906099	+	Silent	SNP	A	A	T	novel		TCGA-2Z-A9JQ-01A-11D-A42J-10	TCGA-2Z-A9JQ-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c0bed76f-49c1-44d5-b9eb-c8ef1b6c63bc	72b21503-f17e-4728-8b9c-d0b550371302	.	IBTK	NM_015525	exon22	c.T3090A	p.S1030S	TCCTTCAGAGTCT	.	70.0	24.0	42.0	0.0	.	128	.	.	.	none	.	.	PASS	Atlas-SNP
MDN1	23195	hgsc.bcm.edu	hg19	6	90491213	90491213	+	Silent	SNP	A	A	G	novel		TCGA-2Z-A9JQ-01A-11D-A42J-10	TCGA-2Z-A9JQ-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c0bed76f-49c1-44d5-b9eb-c8ef1b6c63bc	72b21503-f17e-4728-8b9c-d0b550371302	.	MDN1	NM_014611	exon10	c.T1548C	p.D516D	AGAACTATCACTC	.	158.0	62.0	183.0	0.0	.	478	.	.	.	none	.	.	PASS	Atlas-SNP
PSMB1	5689	hgsc.bcm.edu	hg19	6	170862258	170862258	+	Missense_Mutation	SNP	G	G	T	rs60257797	alternate_allele	TCGA-2Z-A9JQ-01A-11D-A42J-10	TCGA-2Z-A9JQ-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c0bed76f-49c1-44d5-b9eb-c8ef1b6c63bc	72b21503-f17e-4728-8b9c-d0b550371302	.	PSMB1	NM_002793	exon1	c.C73A	p.P25T	GCAAAGGGCCCGC	.	63.0	8.0	82.0	0.0	.	12	.	.	.	alt	G|0.998;A|0.002	.	PASS	Atlas-SNP
COL28A1	340267	hgsc.bcm.edu	hg19	7	7557428	7557428	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Z-A9JQ-01A-11D-A42J-10	TCGA-2Z-A9JQ-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c0bed76f-49c1-44d5-b9eb-c8ef1b6c63bc	72b21503-f17e-4728-8b9c-d0b550371302	.	COL28A1	NM_001037763	exon7	c.G854A	p.G285E	CATACCCCTGGAC	.	246.0	110.0	90.0	0.0	.	113	.	.	.	none	.	.	PASS	Atlas-SNP
MOSPD3	64598	hgsc.bcm.edu	hg19	7	100210558	100210558	+	Silent	SNP	G	G	T	novel		TCGA-2Z-A9JQ-01A-11D-A42J-10	TCGA-2Z-A9JQ-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c0bed76f-49c1-44d5-b9eb-c8ef1b6c63bc	72b21503-f17e-4728-8b9c-d0b550371302	.	MOSPD3	NM_001040098	exon2	c.G144T	p.R48R	CCAGCGGAGCGGA	.	463.0	213.0	382.0	0.0	.	29	.	.	.	none	.	.	PASS	Atlas-SNP
MTUS1	57509	hgsc.bcm.edu	hg19	8	17503480	17503480	+	Silent	SNP	T	T	A	novel		TCGA-2Z-A9JQ-01A-11D-A42J-10	TCGA-2Z-A9JQ-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c0bed76f-49c1-44d5-b9eb-c8ef1b6c63bc	72b21503-f17e-4728-8b9c-d0b550371302	.	MTUS1	NM_001001924	exon15	c.A3768T	p.P1256P	ATTCCTTGGTGAC	.	105.0	45.0	95.0	0.0	.	144	.	.	.	none	.	.	PASS	Atlas-SNP
STC1	6781	hgsc.bcm.edu	hg19	8	23702289	23702289	+	Silent	SNP	A	A	G	novel		TCGA-2Z-A9JQ-01A-11D-A42J-10	TCGA-2Z-A9JQ-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c0bed76f-49c1-44d5-b9eb-c8ef1b6c63bc	72b21503-f17e-4728-8b9c-d0b550371302	.	STC1	NM_003155	exon4	c.T738C	p.S246S	TTATGCACTCTCA	.	58.0	32.0	19.0	0.0	.	49	.	.	.	none	.	.	PASS	Atlas-SNP
POLR1E	64425	hgsc.bcm.edu	hg19	9	37500883	37500883	+	Silent	SNP	G	G	T	novel		TCGA-2Z-A9JQ-01A-11D-A42J-10	TCGA-2Z-A9JQ-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c0bed76f-49c1-44d5-b9eb-c8ef1b6c63bc	72b21503-f17e-4728-8b9c-d0b550371302	.	POLR1E	NM_022490	exon10	c.G933T	p.L311L	ACTGCTGAAGCAC	.	73.0	5.0	108.0	0.0	.	28	.	.	.	none	.	.	PASS	Atlas-SNP
OBP2B	29989	hgsc.bcm.edu	hg19	9	136082700	136082700	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2Z-A9JQ-01A-11D-A42J-10	TCGA-2Z-A9JQ-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c0bed76f-49c1-44d5-b9eb-c8ef1b6c63bc	72b21503-f17e-4728-8b9c-d0b550371302	.	OBP2B	NM_014581	exon4	c.C301G	p.L101V	CCTGCAGGTACAT	.	50.0	20.0	113.0	0.0	.	20	.	.	.	none	.	.	PASS	Atlas-SNP
MTPAP	55149	hgsc.bcm.edu	hg19	10	30615418	30615418	+	Silent	SNP	C	C	T	novel		TCGA-2Z-A9JQ-01A-11D-A42J-10	TCGA-2Z-A9JQ-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c0bed76f-49c1-44d5-b9eb-c8ef1b6c63bc	72b21503-f17e-4728-8b9c-d0b550371302	MTPAP_ENST00000358107,right_upper_lobe,carcinoma,0,2	MTPAP	NM_018109	exon5	c.G927A	p.R309R	CGGACACCGGGCA	.	306.0	135.0	343.0	0.0	.	113	.	.	.	none	.	.	PASS	Atlas-SNP
ANKRD2	26287	hgsc.bcm.edu	hg19	10	99343384	99343384	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Z-A9JQ-01A-11D-A42J-10	TCGA-2Z-A9JQ-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c0bed76f-49c1-44d5-b9eb-c8ef1b6c63bc	72b21503-f17e-4728-8b9c-d0b550371302	.	ANKRD2	NM_020349	exon9	c.C985T	p.H329Y	ACCCGGCACGCCC	.	220.0	90.0	367.0	0.0	.	27	.	.	.	none	.	.	PASS	Atlas-SNP
NRAP	4892	hgsc.bcm.edu	hg19	10	115401186	115401186	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Z-A9JQ-01A-11D-A42J-10	TCGA-2Z-A9JQ-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c0bed76f-49c1-44d5-b9eb-c8ef1b6c63bc	72b21503-f17e-4728-8b9c-d0b550371302	NRAP,NS,carcinoma,0,1	NRAP	NM_001261463	exon13	c.G1261A	p.E421K	CTCCTTCATAGCG	.	42.0	21.0	50.0	0.0	.	208	.	.	.	none	.	.	PASS	Atlas-SNP
MAP4K2	5871	hgsc.bcm.edu	hg19	11	64557720	64557720	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Z-A9JQ-01A-11D-A42J-10	TCGA-2Z-A9JQ-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c0bed76f-49c1-44d5-b9eb-c8ef1b6c63bc	72b21503-f17e-4728-8b9c-d0b550371302	.	MAP4K2	NM_004579	exon29	c.G2188A	p.G730S	GCTCGCCCTGCAT	.	64.0	33.0	79.0	0.0	.	83	.	.	.	none	.	.	PASS	Atlas-SNP
CNTN5	53942	hgsc.bcm.edu	hg19	11	99690335	99690335	+	Missense_Mutation	SNP	A	A	T	rs199945392	alternate_allele	TCGA-2Z-A9JQ-01A-11D-A42J-10	TCGA-2Z-A9JQ-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c0bed76f-49c1-44d5-b9eb-c8ef1b6c63bc	72b21503-f17e-4728-8b9c-d0b550371302	.	CNTN5	NM_001243270	exon3	c.A116T	p.K39M	TTAAGAAGAGTTC	.	88.0	14.0	66.0	0.0	.	324	.	.	.	alt	.	.	PASS	Atlas-SNP
SLC37A4	2542	hgsc.bcm.edu	hg19	11	118898353	118898353	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Z-A9JQ-01A-11D-A42J-10	TCGA-2Z-A9JQ-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c0bed76f-49c1-44d5-b9eb-c8ef1b6c63bc	72b21503-f17e-4728-8b9c-d0b550371302	.	SLC37A4	NM_001467	exon5	c.T610C	p.S204P	CCTCAGAGGGCAT	.	89.0	36.0	119.0	0.0	.	19	.	.	.	none	.	.	PASS	Atlas-SNP
PRDM10	56980	hgsc.bcm.edu	hg19	11	129795021	129795021	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Z-A9JQ-01A-11D-A42J-10	TCGA-2Z-A9JQ-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c0bed76f-49c1-44d5-b9eb-c8ef1b6c63bc	72b21503-f17e-4728-8b9c-d0b550371302	.	PRDM10	NM_020228	exon13	c.T1646C	p.L549S	AAGCGTAAGTGCT	.	127.0	48.0	109.0	0.0	.	120	.	.	.	none	.	.	PASS	Atlas-SNP
KRT6A	3853	hgsc.bcm.edu	hg19	12	52882218	52882218	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2Z-A9JQ-01A-11D-A42J-10	TCGA-2Z-A9JQ-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c0bed76f-49c1-44d5-b9eb-c8ef1b6c63bc	72b21503-f17e-4728-8b9c-d0b550371302	.	KRT6A	NM_005554	exon7	c.G1318C	p.D440H	CCAGGTCCTGCTT	.	101.0	51.0	162.0	0.0	.	89	.	.	.	none	.	.	PASS	Atlas-SNP
KRT72	140807	hgsc.bcm.edu	hg19	12	52985268	52985268	+	Nonsense_Mutation	SNP	C	C	A	rs145259719	byfrequency;alternate_allele	TCGA-2Z-A9JQ-01A-11D-A42J-10	TCGA-2Z-A9JQ-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c0bed76f-49c1-44d5-b9eb-c8ef1b6c63bc	72b21503-f17e-4728-8b9c-d0b550371302	.	KRT72	NM_001146225	exon5	c.G943T	p.E315X	GGGTCTCAGCCTC	.	46.0	17.0	72.0	0.0	.	70	.	.	.	alt	C|1.000;T|0.000	.	PASS	Atlas-SNP
APPL2	55198	hgsc.bcm.edu	hg19	12	105582221	105582221	+	Silent	SNP	A	A	G	novel		TCGA-2Z-A9JQ-01A-11D-A42J-10	TCGA-2Z-A9JQ-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c0bed76f-49c1-44d5-b9eb-c8ef1b6c63bc	72b21503-f17e-4728-8b9c-d0b550371302	.	APPL2	NM_001251904	exon17	c.T1482C	p.S494S	CAAAAGAGAATCT	.	73.0	31.0	50.0	0.0	.	69	.	.	.	none	.	.	PASS	Atlas-SNP
PLCB2	5330	hgsc.bcm.edu	hg19	15	40594770	40594770	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Z-A9JQ-01A-11D-A42J-10	TCGA-2Z-A9JQ-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c0bed76f-49c1-44d5-b9eb-c8ef1b6c63bc	72b21503-f17e-4728-8b9c-d0b550371302	.	PLCB2	NM_004573	exon4	c.A272G	p.D91G	CTGTTATCAGGAA	.	59.0	16.0	127.0	0.0	.	177	.	.	.	none	.	.	PASS	Atlas-SNP
MAP1A	4130	hgsc.bcm.edu	hg19	15	43818453	43818453	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Z-A9JQ-01A-11D-A42J-10	TCGA-2Z-A9JQ-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c0bed76f-49c1-44d5-b9eb-c8ef1b6c63bc	72b21503-f17e-4728-8b9c-d0b550371302	.	MAP1A	NM_002373	exon4	c.G4782T	p.K1594N	ACCAAAGATGCTA	.	142.0	61.0	142.0	0.0	.	189	.	.	.	none	.	.	PASS	Atlas-SNP
HERC1	8925	hgsc.bcm.edu	hg19	15	63918321	63918321	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2Z-A9JQ-01A-11D-A42J-10	TCGA-2Z-A9JQ-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c0bed76f-49c1-44d5-b9eb-c8ef1b6c63bc	72b21503-f17e-4728-8b9c-d0b550371302	.	HERC1	NM_003922	exon71	c.G13138C	p.D4380H	CTGTGTCAGGCAG	.	48.0	16.0	58.0	0.0	.	624	.	.	.	none	.	.	PASS	Atlas-SNP
ST8SIA2	8128	hgsc.bcm.edu	hg19	15	92987897	92987897	+	Silent	SNP	C	C	A	rs146396658	alternate_allele	TCGA-2Z-A9JQ-01A-11D-A42J-10	TCGA-2Z-A9JQ-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c0bed76f-49c1-44d5-b9eb-c8ef1b6c63bc	72b21503-f17e-4728-8b9c-d0b550371302	.	ST8SIA2	NM_006011	exon5	c.C580A	p.R194R	TATGCCCGGGATG	.	110.0	56.0	142.0	0.0	.	41	.	.	.	alt	C|1.000;T|0.000	.	PASS	Atlas-SNP
MCTP2	55784	hgsc.bcm.edu	hg19	15	94841631	94841631	+	Missense_Mutation	SNP	G	G	A	rs61735139	bycluster	TCGA-2Z-A9JQ-01A-11D-A42J-10	TCGA-2Z-A9JQ-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c0bed76f-49c1-44d5-b9eb-c8ef1b6c63bc	72b21503-f17e-4728-8b9c-d0b550371302	MCTP2,caecum,carcinoma,0,2	MCTP2	NM_001159643	exon1	c.G137A	p.R46H	TGGACCGCCGTCT	.	74.0	24.0	69.0	0.0	.	122	.	.	.	weak	G|0.986;A|0.014	0.014	PASS	Atlas-SNP
KLHL36	79786	hgsc.bcm.edu	hg19	16	84690911	84690911	+	Silent	SNP	C	C	T	novel		TCGA-2Z-A9JQ-01A-11D-A42J-10	TCGA-2Z-A9JQ-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c0bed76f-49c1-44d5-b9eb-c8ef1b6c63bc	72b21503-f17e-4728-8b9c-d0b550371302	.	KLHL36	NM_024731	exon3	c.C498T	p.F166F	TGCCTTCATCGAT	.	65.0	34.0	56.0	0.0	.	51	.	.	.	none	.	.	PASS	Atlas-SNP
FANCA	2175	hgsc.bcm.edu	hg19	16	89809242	89809242	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2Z-A9JQ-01A-11D-A42J-10	TCGA-2Z-A9JQ-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c0bed76f-49c1-44d5-b9eb-c8ef1b6c63bc	72b21503-f17e-4728-8b9c-d0b550371302	.	FANCA	NM_000135	exon37	c.A3731T	p.K1244M	AGCTGCTTCCTGA	.	62.0	14.0	50.0	0.0	.	99	.	.	.	none	.	.	PASS	Atlas-SNP
C17orf66	256957	hgsc.bcm.edu	hg19	17	34185488	34185488	+	Silent	SNP	G	G	T	novel		TCGA-2Z-A9JQ-01A-11D-A42J-10	TCGA-2Z-A9JQ-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c0bed76f-49c1-44d5-b9eb-c8ef1b6c63bc	72b21503-f17e-4728-8b9c-d0b550371302	.	C17orf66	NM_152781	exon10	c.C981A	p.A327A	GACTGGGGCTGAG	.	125.0	23.0	127.0	0.0	.	57	.	.	.	none	.	.	PASS	Atlas-SNP
FDXR	2232	hgsc.bcm.edu	hg19	17	72859031	72859031	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Z-A9JQ-01A-11D-A42J-10	TCGA-2Z-A9JQ-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c0bed76f-49c1-44d5-b9eb-c8ef1b6c63bc	72b21503-f17e-4728-8b9c-d0b550371302	.	FDXR	NM_001258012	exon12	c.G1513A	p.D505N	CGGCATCCAGCTT	.	48.0	34.0	80.0	0.0	.	68	.	.	.	none	.	.	PASS	Atlas-SNP
UNK	85451	hgsc.bcm.edu	hg19	17	73818652	73818652	+	Silent	SNP	T	T	A	novel		TCGA-2Z-A9JQ-01A-11D-A42J-10	TCGA-2Z-A9JQ-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c0bed76f-49c1-44d5-b9eb-c8ef1b6c63bc	72b21503-f17e-4728-8b9c-d0b550371302	.	UNK	NM_001080419	exon14	c.T1932A	p.A644A	AGGGGCTGCCGAG	.	83.0	54.0	82.0	0.0	.	87	.	.	.	none	.	.	PASS	Atlas-SNP
TIMP2	7077	hgsc.bcm.edu	hg19	17	76869985	76869985	+	Silent	SNP	C	C	A	rs146970059	bycluster;alternate_allele	TCGA-2Z-A9JQ-01A-11D-A42J-10	TCGA-2Z-A9JQ-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c0bed76f-49c1-44d5-b9eb-c8ef1b6c63bc	72b21503-f17e-4728-8b9c-d0b550371302	.	TIMP2	NM_003255	exon2	c.G147T	p.A49A	ACTGACCGCTTTG	.	81.0	46.0	68.0	0.0	.	27	.	.	.	alt	C|1.000;T|0.000	.	PASS	Atlas-SNP
KIAA1683	80726	hgsc.bcm.edu	hg19	19	18378080	18378080	+	Silent	SNP	G	G	A	novel		TCGA-2Z-A9JQ-01A-11D-A42J-10	TCGA-2Z-A9JQ-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c0bed76f-49c1-44d5-b9eb-c8ef1b6c63bc	72b21503-f17e-4728-8b9c-d0b550371302	.	KIAA1683	NM_001145304	exon3	c.C270T	p.A90A	CTTGAAGGCCTGG	.	91.0	43.0	101.0	0.0	.	190	.	.	.	none	.	.	PASS	Atlas-SNP
PSG8	440533	hgsc.bcm.edu	hg19	19	43258514	43258514	+	Missense_Mutation	SNP	C	C	T	rs200488282	bycluster;alternate_allele	TCGA-2Z-A9JQ-01A-11D-A42J-10	TCGA-2Z-A9JQ-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c0bed76f-49c1-44d5-b9eb-c8ef1b6c63bc	72b21503-f17e-4728-8b9c-d0b550371302	.	PSG8	NM_001130167	exon5	c.G1214A	p.S405N	TTGGAGCTTTCCT	.	90.0	38.0	64.0	0.0	.	101	.	.	.	alt	C|0.999;A|0.001	.	PASS	Atlas-SNP
RTN2	6253	hgsc.bcm.edu	hg19	19	46000066	46000066	+	Silent	SNP	C	C	A	novel		TCGA-2Z-A9JQ-01A-11D-A42J-10	TCGA-2Z-A9JQ-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c0bed76f-49c1-44d5-b9eb-c8ef1b6c63bc	72b21503-f17e-4728-8b9c-d0b550371302	.	RTN2	NM_206900	exon1	c.G18T	p.P6P	GAAGACCGGCAGG	.	148.0	62.0	181.0	0.0	.	45	.	.	.	none	.	.	PASS	Atlas-SNP
GLTSCR1	29998	hgsc.bcm.edu	hg19	19	48205073	48205073	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Z-A9JQ-01A-11D-A42J-10	TCGA-2Z-A9JQ-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c0bed76f-49c1-44d5-b9eb-c8ef1b6c63bc	72b21503-f17e-4728-8b9c-d0b550371302	.	GLTSCR1	NM_015711	exon15	c.A4084G	p.T1362A	AACGGCACGGTGG	.	44.0	16.0	60.0	0.0	.	79	.	.	.	none	.	.	PASS	Atlas-SNP
NUCB1	4924	hgsc.bcm.edu	hg19	19	49404086	49404086	+	Silent	SNP	T	T	C	novel		TCGA-2Z-A9JQ-01A-11D-A42J-10	TCGA-2Z-A9JQ-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c0bed76f-49c1-44d5-b9eb-c8ef1b6c63bc	72b21503-f17e-4728-8b9c-d0b550371302	.	NUCB1	NM_006184	exon2	c.T33C	p.L11L	CCTCCTTCTGTTG	.	42.0	14.0	68.0	0.0	.	44	.	.	.	none	.	.	PASS	Atlas-SNP
ZIM3	114026	hgsc.bcm.edu	hg19	19	57647015	57647015	+	Missense_Mutation	SNP	A	A	T	rs7251328	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes;alternate_allele	TCGA-2Z-A9JQ-01A-11D-A42J-10	TCGA-2Z-A9JQ-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c0bed76f-49c1-44d5-b9eb-c8ef1b6c63bc	72b21503-f17e-4728-8b9c-d0b550371302	.	ZIM3	NM_052882	exon5	c.T690A	p.N230K	GTAGGCATTTCCA	.	51.0	29.0	79.0	0.0	.	107	.	.	.	alt	A|0.387;G|0.613	.	PASS	Atlas-SNP
ZNF343	79175	hgsc.bcm.edu	hg19	20	2473416	2473416	+	Missense_Mutation	SNP	C	C	T	rs145750724	alternate_allele	TCGA-2Z-A9JQ-01A-11D-A42J-10	TCGA-2Z-A9JQ-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c0bed76f-49c1-44d5-b9eb-c8ef1b6c63bc	72b21503-f17e-4728-8b9c-d0b550371302	.	ZNF343	NM_024325	exon5	c.G233A	p.R78K	CTCAGTCTCTTCC	.	38.0	17.0	39.0	0.0	.	47	.	.	.	alt	C|1.000;G|0.000	.	PASS	Atlas-SNP
DHX35	60625	hgsc.bcm.edu	hg19	20	37653904	37653904	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Z-A9JQ-01A-11D-A42J-10	TCGA-2Z-A9JQ-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c0bed76f-49c1-44d5-b9eb-c8ef1b6c63bc	72b21503-f17e-4728-8b9c-d0b550371302	.	DHX35	NM_021931	exon18	c.A1703G	p.H568R	AGGAACATTTCCT	.	90.0	37.0	76.0	0.0	.	82	.	.	.	none	.	.	PASS	Atlas-SNP
CDH4	1002	hgsc.bcm.edu	hg19	20	60508065	60508065	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Z-A9JQ-01A-11D-A42J-10	TCGA-2Z-A9JQ-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c0bed76f-49c1-44d5-b9eb-c8ef1b6c63bc	72b21503-f17e-4728-8b9c-d0b550371302	.	CDH4	NM_001794	exon14	c.G2262A	p.M754I	TGTCATGTGGATG	.	108.0	42.0	151.0	0.0	.	172	.	.	.	none	.	.	PASS	Atlas-SNP
TPTE	7179	hgsc.bcm.edu	hg19	21	10959746	10959746	+	Silent	SNP	T	T	C	rs369891740		TCGA-2Z-A9JQ-01A-11D-A42J-10	TCGA-2Z-A9JQ-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c0bed76f-49c1-44d5-b9eb-c8ef1b6c63bc	72b21503-f17e-4728-8b9c-d0b550371302	.	TPTE	NM_199261	exon8	c.A228G	p.S76S	CTCATATGAAGCA	.	610.0	151.0	510.0	0.0	.	513	.	.	.	weak	.	.	PASS	Atlas-SNP
DSCAM	1826	hgsc.bcm.edu	hg19	21	41725475	41725475	+	Missense_Mutation	SNP	C	C	A	rs140655651	bycluster;by1000genomes;alternate_allele	TCGA-2Z-A9JQ-01A-11D-A42J-10	TCGA-2Z-A9JQ-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c0bed76f-49c1-44d5-b9eb-c8ef1b6c63bc	72b21503-f17e-4728-8b9c-d0b550371302	.	DSCAM	NM_001271534	exon5	c.G851T	p.R284L	GAGGGGCGAATGT	.	67.0	27.0	63.0	0.0	.	347	.	.	.	alt	C|0.999;T|0.001	.	PASS	Atlas-SNP
TTC28	23331	hgsc.bcm.edu	hg19	22	28379354	28379354	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Z-A9JQ-01A-11D-A42J-10	TCGA-2Z-A9JQ-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c0bed76f-49c1-44d5-b9eb-c8ef1b6c63bc	72b21503-f17e-4728-8b9c-d0b550371302	.	TTC28	NM_001145418	exon23	c.G6301T	p.G2101W	TGCTCCCTTTGGA	.	58.0	26.0	75.0	0.0	.	84	.	.	.	none	.	.	PASS	Atlas-SNP
EGFL6	25975	hgsc.bcm.edu	hg19	X	13588004	13588004	+	Silent	SNP	G	G	T	novel		TCGA-2Z-A9JQ-01A-11D-A42J-10	TCGA-2Z-A9JQ-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c0bed76f-49c1-44d5-b9eb-c8ef1b6c63bc	72b21503-f17e-4728-8b9c-d0b550371302	.	EGFL6	NM_001167890	exon1	c.G24T	p.A8A	CCTTGCGCTCCCG	.	87.0	4.0	116.0	0.0	.	111	.	.	.	none	.	.	PASS	Atlas-SNP
FAM122B	159090	hgsc.bcm.edu	hg19	X	133906199	133906199	+	Silent	SNP	G	G	A	novel		TCGA-2Z-A9JQ-01A-11D-A42J-10	TCGA-2Z-A9JQ-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c0bed76f-49c1-44d5-b9eb-c8ef1b6c63bc	72b21503-f17e-4728-8b9c-d0b550371302	.	FAM122B	NM_001170756	exon10	c.C771T	p.F257F	CAAGATGAACGAA	.	77.0	61.0	87.0	0.0	.	20	.	.	.	none	.	.	PASS	Atlas-SNP
FRAS1	80144	hgsc.bcm.edu	hg19	4	79229272	79229272	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-2Z-A9JQ-01A-11D-A42J-10	TCGA-2Z-A9JQ-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c0bed76f-49c1-44d5-b9eb-c8ef1b6c63bc	72b21503-f17e-4728-8b9c-d0b550371302	.	FRAS1	NM_025074	exon15	c.1586delT	p.L529fs	.	.	107.0	41.0	111.0	0.0	.	779	.	0.383178	0	none	.	.	PASS	Atlas-Indel,Pindel
PLS1	5357	hgsc.bcm.edu	hg19	3	142383093	142383093	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-2Z-A9JQ-01A-11D-A42J-10	TCGA-2Z-A9JQ-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c0bed76f-49c1-44d5-b9eb-c8ef1b6c63bc	72b21503-f17e-4728-8b9c-d0b550371302	.	PLS1	NM_001172312	exon2	c.13delA	p.T5fs	.	.	193.0	80.0	166.0	0.0	.	71	.	0.414508	0	none	.	.	PASS	Atlas-INDEL
GPR123	84435	hgsc.bcm.edu	hg19	10	134916320	134916320	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-2Z-A9JQ-01A-11D-A42J-10	TCGA-2Z-A9JQ-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c0bed76f-49c1-44d5-b9eb-c8ef1b6c63bc	72b21503-f17e-4728-8b9c-d0b550371302	.	GPR123	NM_001083909	exon5	c.374delC	p.P125fs	.	.	41.0	19.0	58.0	0.0	.	118	.	0.463415	0	none	.	.	PASS	Atlas-Indel,Pindel
CBLL1	79872	hgsc.bcm.edu	hg19	7	107389353	107389354	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-2Z-A9JQ-01A-11D-A42J-10	TCGA-2Z-A9JQ-10A-01D-A42M-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c0bed76f-49c1-44d5-b9eb-c8ef1b6c63bc	72b21503-f17e-4728-8b9c-d0b550371302	.	CBLL1	NM_024814	exon2	c.41_42del	p.14_14del	.	.	291.0	96.0	169.0	0.0	.	54	.	0.329897	0	none	.	.	PASS	Atlas-INDEL
OAS3	4940	hgsc.bcm.edu	hg19	12	113386980	113386982	+	In_Frame_Del	DEL	CTG	CTG	-	novel		TCGA-2Z-A9JQ-01A-11D-A42J-10	TCGA-2Z-A9JQ-10A-01D-A42M-10	CTG	CTG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c0bed76f-49c1-44d5-b9eb-c8ef1b6c63bc	72b21503-f17e-4728-8b9c-d0b550371302	.	OAS3	NM_006187	exon6	c.1343_1345del	p.448_449del	.	.	30.0	11.0	41.0	0.0	.	63	.	0.366667	0	none	.	.	PASS	Atlas-INDEL
ELANE	1991	hgsc.bcm.edu	hg19	19	856058	856058	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-2Z-A9JQ-01A-11D-A42J-10	TCGA-2Z-A9JQ-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c0bed76f-49c1-44d5-b9eb-c8ef1b6c63bc	72b21503-f17e-4728-8b9c-d0b550371302	ELANE,brain,primitive_neuroectodermal_tumour-medulloblastoma,0,1	ELANE	NM_001972	exon5	c.697delG	p.A233fs	.	.	129.0	70.0	207.0	0.0	.	27	.	0.542636	0	none	.	.	PASS	Atlas-Indel,Pindel
FKBP10	60681	hgsc.bcm.edu	hg19	17	39975893	39975893	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-2Z-A9JQ-01A-11D-A42J-10	TCGA-2Z-A9JQ-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c0bed76f-49c1-44d5-b9eb-c8ef1b6c63bc	72b21503-f17e-4728-8b9c-d0b550371302	.	FKBP10	NM_021939	exon6	c.1028delT	p.I343fs	.	.	88.0	24.0	82.0	0.0	.	57	.	0.272727	0	none	.	.	PASS	Atlas-Indel,Pindel
ZNF479	90827	hgsc.bcm.edu	hg19	7	57188741	57188741	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-2Z-A9JQ-01A-11D-A42J-10	TCGA-2Z-A9JQ-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c0bed76f-49c1-44d5-b9eb-c8ef1b6c63bc	72b21503-f17e-4728-8b9c-d0b550371302	.	ZNF479	NM_033273	exon5	c.382delT	p.C128fs	.	.	376.0	151.0	141.0	0.0	.	193	.	0.401596	0	none	.	.	PASS	Atlas-Indel,Pindel
TXNDC2	84203	hgsc.bcm.edu	hg19	18	9886730	9886730	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-2Z-A9JQ-01A-11D-A42J-10	TCGA-2Z-A9JQ-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c0bed76f-49c1-44d5-b9eb-c8ef1b6c63bc	72b21503-f17e-4728-8b9c-d0b550371302	.	TXNDC2	NM_001098529	exon2	c.253delG	p.E85fs	.	.	73.0	34.0	114.0	0.0	.	168	.	0.465753	0	none	.	.	PASS	Atlas-Indel,Pindel
CBLL1	79872	hgsc.bcm.edu	hg19	7	107389358	107389358	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-2Z-A9JQ-01A-11D-A42J-10	TCGA-2Z-A9JQ-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c0bed76f-49c1-44d5-b9eb-c8ef1b6c63bc	72b21503-f17e-4728-8b9c-d0b550371302	.	CBLL1	NM_024814	exon2	c.46delT	p.S16fs	.	.	293.0	102.0	169.0	0.0	.	54	.	0.348123	0	none	.	.	PASS	Atlas-INDEL
ALOX12B	242	hgsc.bcm.edu	hg19	17	7976157	7976158	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-2Z-A9JQ-01A-11D-A42J-10	TCGA-2Z-A9JQ-10A-01D-A42M-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c0bed76f-49c1-44d5-b9eb-c8ef1b6c63bc	72b21503-f17e-4728-8b9c-d0b550371302	.	ALOX12B	NM_001139	exon15	c.2038_2039insC	p.N680fs	.	.	161.0	104.0	162.0	0.0	.	61	.	0.645963	0	none	.	.	PASS	Atlas-Indel,Pindel
KDM6B	23135	hgsc.bcm.edu	hg19	17	7749761	7749761	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-2Z-A9JQ-01A-11D-A42J-10	TCGA-2Z-A9JQ-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c0bed76f-49c1-44d5-b9eb-c8ef1b6c63bc	72b21503-f17e-4728-8b9c-d0b550371302	.	KDM6B	NM_001080424	exon7	c.499delG	p.A167fs	.	.	115.0	30.0	135.0	0.0	.	95	.	0.26087	0	none	.	.	PASS	Atlas-Indel,Pindel
SFTPD	6441	hgsc.bcm.edu	hg19	10	81702210	81702210	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-2Z-A9JQ-01A-11D-A42J-10	TCGA-2Z-A9JQ-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c0bed76f-49c1-44d5-b9eb-c8ef1b6c63bc	72b21503-f17e-4728-8b9c-d0b550371302	.	SFTPD	NM_003019	exon4	c.368delT	p.L123fs	.	.	47.0	21.0	69.0	0.0	.	43	.	0.446809	0	none	.	.	PASS	Atlas-Indel,Pindel
PLXNB1	5364	hgsc.bcm.edu	hg19	3	48457576	48457576	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-2Z-A9JQ-01A-11D-A42J-10	TCGA-2Z-A9JQ-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c0bed76f-49c1-44d5-b9eb-c8ef1b6c63bc	72b21503-f17e-4728-8b9c-d0b550371302	.	PLXNB1	NM_001130082	exon18	c.3482delA	p.D1161fs	.	.	109.0	37.0	120.0	0.0	.	150	.	0.33945	0	none	.	.	PASS	Atlas-Indel,Pindel
LINC00482	284185	hgsc.bcm.edu	hg19	17	79278931	79278931	+	RNA	DEL	G	G	-	novel		TCGA-2Z-A9JQ-01A-11D-A42J-10	TCGA-2Z-A9JQ-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c0bed76f-49c1-44d5-b9eb-c8ef1b6c63bc	72b21503-f17e-4728-8b9c-d0b550371302	.	.	.	.	.	.	.	.	55.0	27.0	49.0	0.0	.	.	.	0.490909	0	none	.	.	PASS	Atlas-Indel,Pindel
GCC2	9648	hgsc.bcm.edu	hg19	2	109102163	109102164	+	Frame_Shift_Del	DEL	AA	AA	-	novel		TCGA-2Z-A9JQ-01A-11D-A42J-10	TCGA-2Z-A9JQ-10A-01D-A42M-10	AA	AA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c0bed76f-49c1-44d5-b9eb-c8ef1b6c63bc	72b21503-f17e-4728-8b9c-d0b550371302	.	GCC2	NM_181453	exon14	c.3684_3685del	p.1228_1229del	.	.	608.0	237.0	545.0	0.0	.	129	.	0.389803	0	none	.	.	PASS	Atlas-Indel,Pindel
MIR549	693132	hgsc.bcm.edu	hg19	15	81134366	81134386	+	RNA	DEL	CAGTGACAACTATGGATGAGC	CAGTGACAACTATGGATGAGC	-	novel		TCGA-2Z-A9JQ-01A-11D-A42J-10	TCGA-2Z-A9JQ-10A-01D-A42M-10	CAGTGACAACTATGGATGAGC	CAGTGACAACTATGGATGAGC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c0bed76f-49c1-44d5-b9eb-c8ef1b6c63bc	72b21503-f17e-4728-8b9c-d0b550371302	.	.	.	.	.	.	.	.	145.0	63.0	193.0	0.0	.	.	.	0.434483	0	none	.	.	PASS	Atlas-Indel,Pindel
CNTN5	53942	hgsc.bcm.edu	hg19	11	99690335	99690336	+	In_Frame_Ins	INS	-	-	GAGTTGAGTTGAGTT	novel		TCGA-2Z-A9JQ-01A-11D-A42J-10	TCGA-2Z-A9JQ-10A-01D-A42M-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c0bed76f-49c1-44d5-b9eb-c8ef1b6c63bc	72b21503-f17e-4728-8b9c-d0b550371302	.	CNTN5	NM_001243271	exon4	c.116_117insGAGTTGAGTTGAGTT	p.K39delinsKSX	.	.	90.0	12.0	66.0	0.0	.	324	.	0.133	.	none	.	.	PASS	Pindel
PLS1	5357	hgsc.bcm.edu	hg19	3	142383090	142383093	+	Frame_Shift_Del	DEL	GTAC	GTAC	-	novel		TCGA-2Z-A9JQ-01A-11D-A42J-10	TCGA-2Z-A9JQ-10A-01D-A42M-10	GTAC	GTAC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c0bed76f-49c1-44d5-b9eb-c8ef1b6c63bc	72b21503-f17e-4728-8b9c-d0b550371302	.	PLS1	NM_001172312	exon2	c.10_13del	p.4_5del	.	.	194.0	52.0	167.0	0.0	.	71	.	0.268	.	none	.	.	PASS	Pindel
CBLL1	79872	hgsc.bcm.edu	hg19	7	107389353	107389358	+	In_Frame_Del	DEL	TGGATC	TGGATC	-	novel		TCGA-2Z-A9JQ-01A-11D-A42J-10	TCGA-2Z-A9JQ-10A-01D-A42M-10	TGGATC	TGGATC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c0bed76f-49c1-44d5-b9eb-c8ef1b6c63bc	72b21503-f17e-4728-8b9c-d0b550371302	.	CBLL1	NM_024814	exon2	c.41_46del	p.14_16del	.	.	299.0	74.0	173.0	0.0	.	54	.	0.247	.	none	.	.	PASS	Pindel
NAV2	89797	hgsc.bcm.edu	hg19	11	19901514	19901521	+	Frame_Shift_Del	DEL	CACCTCTG	CACCTCTG	-	novel		TCGA-2Z-A9JQ-01A-11D-A42J-10	TCGA-2Z-A9JQ-10A-01D-A42M-10	CACCTCTG	CACCTCTG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c0bed76f-49c1-44d5-b9eb-c8ef1b6c63bc	72b21503-f17e-4728-8b9c-d0b550371302	.	NAV2	NM_145117	exon5	c.610_617del	p.204_206del	.	.	50.0	12.0	63.0	0.0	.	255	.	0.240	.	none	.	.	PASS	Pindel