Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
CELF3	11189	hgsc.bcm.edu	hg19	1	151679166	151679166	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Z-A9JJ-01A-11D-A42J-10	TCGA-2Z-A9JJ-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d24232d5-301a-471f-bfc3-a6cc25ff860b	47cbf5dc-dc36-4c04-905c-d43e8c5d986e	.	CELF3	NM_007185	exon9	c.G967A	p.A323T	TCCCCGCGTAGGC	.	101.0	44.0	170.0	0.0	.	49	.	.	.	none	.	.	PASS	Atlas-SNP
C1orf74	148304	hgsc.bcm.edu	hg19	1	209956222	209956222	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Z-A9JJ-01A-11D-A42J-10	TCGA-2Z-A9JJ-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d24232d5-301a-471f-bfc3-a6cc25ff860b	47cbf5dc-dc36-4c04-905c-d43e8c5d986e	.	C1orf74	NM_152485	exon2	c.C758T	p.A253V	AGATCAGCAAAGT	.	80.0	4.0	79.0	0.0	.	30	.	.	.	none	.	.	PASS	Atlas-SNP
CELSR3	1951	hgsc.bcm.edu	hg19	3	48687979	48687979	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Z-A9JJ-01A-11D-A42J-10	TCGA-2Z-A9JJ-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d24232d5-301a-471f-bfc3-a6cc25ff860b	47cbf5dc-dc36-4c04-905c-d43e8c5d986e	.	CELSR3	NM_001407	exon16	c.G6406T	p.G2136C	ACACACCAGATCT	.	168.0	53.0	295.0	0.0	.	237	.	.	.	none	.	.	PASS	Atlas-SNP
HEG1	57493	hgsc.bcm.edu	hg19	3	124732410	124732410	+	Silent	SNP	A	A	G	novel		TCGA-2Z-A9JJ-01A-11D-A42J-10	TCGA-2Z-A9JJ-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d24232d5-301a-471f-bfc3-a6cc25ff860b	47cbf5dc-dc36-4c04-905c-d43e8c5d986e	.	HEG1	NM_020733	exon6	c.T2013C	p.S671S	CCCTGAAGAAGAA	.	84.0	11.0	71.0	0.0	.	109	.	.	.	none	.	.	PASS	Atlas-SNP
PCYT1A	5130	hgsc.bcm.edu	hg19	3	195968896	195968896	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Z-A9JJ-01A-11D-A42J-10	TCGA-2Z-A9JJ-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d24232d5-301a-471f-bfc3-a6cc25ff860b	47cbf5dc-dc36-4c04-905c-d43e8c5d986e	.	PCYT1A	NM_005017	exon8	c.C631T	p.R211W	AATCCCGCACAAT	.	91.0	4.0	118.0	0.0	.	34	.	.	.	none	.	.	PASS	Atlas-SNP
BMP2K	55589	hgsc.bcm.edu	hg19	4	79792157	79792157	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2Z-A9JJ-01A-11D-A42J-10	TCGA-2Z-A9JJ-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d24232d5-301a-471f-bfc3-a6cc25ff860b	47cbf5dc-dc36-4c04-905c-d43e8c5d986e	.	BMP2K	NM_017593	exon11	c.G1452C	p.Q484H	GCAGCAGCAGCAG	.	10.0	5.0	11.0	0.0	.	169	.	.	.	none	.	.	PASS	Atlas-SNP
BMP2K	55589	hgsc.bcm.edu	hg19	4	79792160	79792160	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2Z-A9JJ-01A-11D-A42J-10	TCGA-2Z-A9JJ-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d24232d5-301a-471f-bfc3-a6cc25ff860b	47cbf5dc-dc36-4c04-905c-d43e8c5d986e	.	BMP2K	NM_017593	exon11	c.G1455C	p.Q485H	GCAGCAGCAGCAC	.	11.0	5.0	11.0	0.0	.	169	.	.	.	none	.	.	PASS	Atlas-SNP
TUBB	203068	hgsc.bcm.edu	hg19	6	30691726	30691726	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2Z-A9JJ-01A-11D-A42J-10	TCGA-2Z-A9JJ-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d24232d5-301a-471f-bfc3-a6cc25ff860b	47cbf5dc-dc36-4c04-905c-d43e8c5d986e	.	TUBB	NM_178014	exon4	c.C887G	p.A296G	TCGATGCCAAGAA	.	47.0	16.0	39.0	0.0	.	30	.	.	.	none	.	.	PASS	Atlas-SNP
SPDEF	25803	hgsc.bcm.edu	hg19	6	34506127	34506127	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Z-A9JJ-01A-11D-A42J-10	TCGA-2Z-A9JJ-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d24232d5-301a-471f-bfc3-a6cc25ff860b	47cbf5dc-dc36-4c04-905c-d43e8c5d986e	.	SPDEF	NM_012391	exon6	c.A932G	p.Q311R	TAATACTGGCGGA	.	94.0	11.0	180.0	0.0	.	34	.	.	.	none	.	.	PASS	Atlas-SNP
DNAH8	1769	hgsc.bcm.edu	hg19	6	38835956	38835956	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Z-A9JJ-01A-11D-A42J-10	TCGA-2Z-A9JJ-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d24232d5-301a-471f-bfc3-a6cc25ff860b	47cbf5dc-dc36-4c04-905c-d43e8c5d986e	.	DNAH8	NM_001206927	exon48	c.T6812C	p.M2271T	GAGATATGAACCT	.	104.0	20.0	44.0	0.0	.	1239	.	.	.	none	.	.	PASS	Atlas-SNP
DST	667	hgsc.bcm.edu	hg19	6	56382076	56382076	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Z-A9JJ-01A-11D-A42J-10	TCGA-2Z-A9JJ-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d24232d5-301a-471f-bfc3-a6cc25ff860b	47cbf5dc-dc36-4c04-905c-d43e8c5d986e	.	DST	NM_015548	exon52	c.A10408G	p.K3470E	TATCCTTGTGTCT	.	34.0	11.0	14.0	0.0	.	1427	.	.	.	none	.	.	PASS	Atlas-SNP
FAM46A	55603	hgsc.bcm.edu	hg19	6	82461742	82461742	+	Silent	SNP	G	G	A	novel		TCGA-2Z-A9JJ-01A-11D-A42J-10	TCGA-2Z-A9JJ-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d24232d5-301a-471f-bfc3-a6cc25ff860b	47cbf5dc-dc36-4c04-905c-d43e8c5d986e	.	FAM46A	NM_017633	exon2	c.C117T	p.G39G	GTCGCCGCCGCCG	.	37.0	5.0	43.0	0.0	.	37	.	.	.	none	.	.	PASS	Atlas-SNP
GPR124	25960	hgsc.bcm.edu	hg19	8	37690712	37690712	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Z-A9JJ-01A-11D-A42J-10	TCGA-2Z-A9JJ-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d24232d5-301a-471f-bfc3-a6cc25ff860b	47cbf5dc-dc36-4c04-905c-d43e8c5d986e	.	GPR124	NM_032777	exon9	c.T1282C	p.Y428H	GTGCTGTACACCT	.	27.0	8.0	51.0	0.0	.	85	.	.	.	none	.	.	PASS	Atlas-SNP
VPS13A	23230	hgsc.bcm.edu	hg19	9	79936242	79936242	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Z-A9JJ-01A-11D-A42J-10	TCGA-2Z-A9JJ-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d24232d5-301a-471f-bfc3-a6cc25ff860b	47cbf5dc-dc36-4c04-905c-d43e8c5d986e	.	VPS13A	NM_001018038	exon43	c.A5573G	p.K1858R	TAGTCAAGGTAAG	.	221.0	75.0	88.0	0.0	.	735	.	.	.	none	.	.	PASS	Atlas-SNP
ALKBH8	91801	hgsc.bcm.edu	hg19	11	107427686	107427686	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Z-A9JJ-01A-11D-A42J-10	TCGA-2Z-A9JJ-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d24232d5-301a-471f-bfc3-a6cc25ff860b	47cbf5dc-dc36-4c04-905c-d43e8c5d986e	.	ALKBH8	NM_138775	exon3	c.G173A	p.R58Q	TGGTTCCGACTCA	.	139.0	48.0	74.0	0.0	.	88	.	.	.	none	.	.	PASS	Atlas-SNP
ITPR2	3709	hgsc.bcm.edu	hg19	12	26810812	26810812	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-2Z-A9JJ-01A-11D-A42J-10	TCGA-2Z-A9JJ-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d24232d5-301a-471f-bfc3-a6cc25ff860b	47cbf5dc-dc36-4c04-905c-d43e8c5d986e	.	ITPR2	NM_002223	exon18	c.C2020T	p.Q674X	CTGCTTGCATTGA	.	106.0	30.0	80.0	0.0	.	270	.	.	.	none	.	.	PASS	Atlas-SNP
SIRT7	51547	hgsc.bcm.edu	hg19	17	79871988	79871988	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Z-A9JJ-01A-11D-A42J-10	TCGA-2Z-A9JJ-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d24232d5-301a-471f-bfc3-a6cc25ff860b	47cbf5dc-dc36-4c04-905c-d43e8c5d986e	.	SIRT7	NM_016538	exon8	c.C872T	p.P291L	AGCTTCGGCCGCC	.	82.0	4.0	145.0	0.0	.	37	.	.	.	none	.	.	PASS	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	hg19	19	9062897	9062897	+	Silent	SNP	G	G	A	novel		TCGA-2Z-A9JJ-01A-11D-A42J-10	TCGA-2Z-A9JJ-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d24232d5-301a-471f-bfc3-a6cc25ff860b	47cbf5dc-dc36-4c04-905c-d43e8c5d986e	.	MUC16	NM_024690	exon3	c.C24549T	p.I8183I	TCTGGTGATGGTT	.	54.0	24.0	43.0	0.0	.	4315	.	.	.	none	.	.	PASS	Atlas-SNP
PRDM15	63977	hgsc.bcm.edu	hg19	21	43230577	43230577	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2Z-A9JJ-01A-11D-A42J-10	TCGA-2Z-A9JJ-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d24232d5-301a-471f-bfc3-a6cc25ff860b	47cbf5dc-dc36-4c04-905c-d43e8c5d986e	.	PRDM15	NM_022115	exon28	c.A3683C	p.Q1228P	CACAGCTGGCAGC	.	38.0	13.0	76.0	0.0	.	110	.	.	.	none	.	.	PASS	Atlas-SNP
DMD	1756	hgsc.bcm.edu	hg19	X	31462641	31462641	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2Z-A9JJ-01A-11D-A42J-10	TCGA-2Z-A9JJ-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d24232d5-301a-471f-bfc3-a6cc25ff860b	47cbf5dc-dc36-4c04-905c-d43e8c5d986e	.	DMD	NM_004006	exon60	c.T9041G	p.L3014R	GTGCTGAGGTTAT	.	123.0	58.0	37.0	0.0	.	2127	.	.	.	none	.	.	PASS	Atlas-SNP
TIMP1	7076	hgsc.bcm.edu	hg19	X	47445924	47445924	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2Z-A9JJ-01A-11D-A42J-10	TCGA-2Z-A9JJ-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d24232d5-301a-471f-bfc3-a6cc25ff860b	47cbf5dc-dc36-4c04-905c-d43e8c5d986e	.	TIMP1	NM_003254	exon6	c.T458G	p.F153C	AGGTGTTTCCCTG	.	46.0	18.0	79.0	0.0	.	12	.	.	.	none	.	.	PASS	Atlas-SNP
SHROOM4	57477	hgsc.bcm.edu	hg19	X	50350751	50350751	+	Missense_Mutation	SNP	G	G	C	rs201290098		TCGA-2Z-A9JJ-01A-11D-A42J-10	TCGA-2Z-A9JJ-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d24232d5-301a-471f-bfc3-a6cc25ff860b	47cbf5dc-dc36-4c04-905c-d43e8c5d986e	.	SHROOM4	NM_020717	exon6	c.C3391G	p.Q1131E	CCTCCTGTTGCTT	.	125.0	5.0	50.0	0.0	.	171	.	.	.	weak	.	.	PASS	Atlas-SNP
HUWE1	10075	hgsc.bcm.edu	hg19	X	53627271	53627271	+	Splice_Site	SNP	T	T	C	novel		TCGA-2Z-A9JJ-01A-11D-A42J-10	TCGA-2Z-A9JJ-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d24232d5-301a-471f-bfc3-a6cc25ff860b	47cbf5dc-dc36-4c04-905c-d43e8c5d986e	.	HUWE1	NM_031407	exon30	c.2972-2A>G	.	CCCATCTACAGAT	.	98.0	4.0	30.0	0.0	.	724	.	.	.	none	.	.	PASS	Atlas-SNP
SYVN1	84447	hgsc.bcm.edu	hg19	11	64898172	64898173	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-2Z-A9JJ-01A-11D-A42J-10	TCGA-2Z-A9JJ-10A-01D-A42M-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d24232d5-301a-471f-bfc3-a6cc25ff860b	47cbf5dc-dc36-4c04-905c-d43e8c5d986e	.	SYVN1	NM_032431	exon11	c.1065_1066insC	p.P355fs	.	.	31.0	14.0	48.0	0.0	.	55	.	0.451613	0	none	.	.	PASS	Atlas-INDEL
ABCB5	340273	hgsc.bcm.edu	hg19	7	20739491	20739492	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-2Z-A9JJ-01A-11D-A42J-10	TCGA-2Z-A9JJ-10A-01D-A42M-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d24232d5-301a-471f-bfc3-a6cc25ff860b	47cbf5dc-dc36-4c04-905c-d43e8c5d986e	.	ABCB5	NM_001163941	exon18	c.2198_2199insT	p.E733fs	.	.	78.0	17.0	48.0	0.0	.	357	.	0.217949	0	none	.	.	PASS	Atlas-Indel,Pindel