Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
WDR64	128025	hgsc.bcm.edu	hg19	1	241959614	241959614	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Z-A9JI-01A-11D-A42J-10	TCGA-2Z-A9JI-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5bfd6e6f-8fab-42fd-a989-337b66a1d899	df9506ba-fa32-4644-b582-2207bd0595fc	.	WDR64	NM_144625	exon26	c.A3104G	p.K1035R	CCCAAAAGGACTC	.	87.0	4.0	77.0	0.0	.	234	.	.	.	none	.	.	PASS	Atlas-SNP
MARCO	8685	hgsc.bcm.edu	hg19	2	119727691	119727691	+	Silent	SNP	T	T	A	novel		TCGA-2Z-A9JI-01A-11D-A42J-10	TCGA-2Z-A9JI-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5bfd6e6f-8fab-42fd-a989-337b66a1d899	df9506ba-fa32-4644-b582-2207bd0595fc	.	MARCO	NM_006770	exon3	c.T201A	p.V67V	CCCAGTTCTGAAT	.	64.0	12.0	24.0	0.0	.	120	.	.	.	none	.	.	PASS	Atlas-SNP
KIF1A	547	hgsc.bcm.edu	hg19	2	241696843	241696843	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Z-A9JI-01A-11D-A42J-10	TCGA-2Z-A9JI-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5bfd6e6f-8fab-42fd-a989-337b66a1d899	df9506ba-fa32-4644-b582-2207bd0595fc	.	KIF1A	NM_001244008	exon27	c.G2751T	p.E917D	CTCATCCTCCTCC	.	132.0	6.0	177.0	0.0	.	152	.	.	.	none	.	.	PASS	Atlas-SNP
EIF4G1	1981	hgsc.bcm.edu	hg19	3	184035257	184035257	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Z-A9JI-01A-11D-A42J-10	TCGA-2Z-A9JI-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5bfd6e6f-8fab-42fd-a989-337b66a1d899	df9506ba-fa32-4644-b582-2207bd0595fc	.	EIF4G1	NM_001194946	exon6	c.C317T	p.S106F	CAGCCTCCCAGGG	.	98.0	23.0	145.0	0.0	.	151	.	.	.	none	.	.	PASS	Atlas-SNP
MUC4	4585	hgsc.bcm.edu	hg19	3	195510011	195510011	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Z-A9JI-01A-11D-A42J-10	TCGA-2Z-A9JI-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5bfd6e6f-8fab-42fd-a989-337b66a1d899	df9506ba-fa32-4644-b582-2207bd0595fc	.	MUC4	NM_018406	exon2	c.G8440A	p.A2814T	AGGTGGCGTGACC	.	43.0	9.0	10.0	0.0	.	1505	.	.	.	none	.	.	PASS	Atlas-SNP
ETV1	2115	hgsc.bcm.edu	hg19	7	13946127	13946127	+	Silent	SNP	A	A	G	novel		TCGA-2Z-A9JI-01A-11D-A42J-10	TCGA-2Z-A9JI-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5bfd6e6f-8fab-42fd-a989-337b66a1d899	df9506ba-fa32-4644-b582-2207bd0595fc	.	ETV1	NM_004956	exon12	c.T1038C	p.D346D	AGGGTCATCCAGA	.	217.0	31.0	156.0	0.0	.	138	.	.	.	none	.	.	PASS	Atlas-SNP
AP3M1	26985	hgsc.bcm.edu	hg19	10	75889698	75889698	+	Silent	SNP	T	T	C	novel		TCGA-2Z-A9JI-01A-11D-A42J-10	TCGA-2Z-A9JI-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5bfd6e6f-8fab-42fd-a989-337b66a1d899	df9506ba-fa32-4644-b582-2207bd0595fc	.	AP3M1	NM_207012	exon6	c.A636G	p.L212L	TCCAGATAGTTTA	.	55.0	18.0	64.0	0.0	.	28	.	.	.	none	.	.	PASS	Atlas-SNP
IFITM3	10410	hgsc.bcm.edu	hg19	11	320733	320733	+	Missense_Mutation	SNP	G	G	C	rs55888283		TCGA-2Z-A9JI-01A-11D-A42J-10	TCGA-2Z-A9JI-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5bfd6e6f-8fab-42fd-a989-337b66a1d899	df9506ba-fa32-4644-b582-2207bd0595fc	IFITM3,brain,glioma,0,1	IFITM3	NM_021034	exon1	c.C81G	p.H27Q	CACCTCGTGCTCC	.	47.0	3.0	44.0	2.0	.	132	.	.	.	weak	.	.	PASS	Atlas-SNP
RNF10	9921	hgsc.bcm.edu	hg19	12	121013657	121013657	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Z-A9JI-01A-11D-A42J-10	TCGA-2Z-A9JI-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5bfd6e6f-8fab-42fd-a989-337b66a1d899	df9506ba-fa32-4644-b582-2207bd0595fc	.	RNF10	NM_014868	exon16	c.C2263T	p.R755C	TCAGACCGTGTTC	.	72.0	4.0	53.0	0.0	.	75	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF268	10795	hgsc.bcm.edu	hg19	12	133764464	133764464	+	Missense_Mutation	SNP	C	C	T	rs200829573	bycluster	TCGA-2Z-A9JI-01A-11D-A42J-10	TCGA-2Z-A9JI-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5bfd6e6f-8fab-42fd-a989-337b66a1d899	df9506ba-fa32-4644-b582-2207bd0595fc	ZNF268,NS,carcinoma,0,1	ZNF268	NM_152943	exon3	c.C40T	p.P14S	GTCCCACCTCTCC	.	105.0	23.0	60.0	0.0	.	71	.	.	.	weak	C|0.998;T|0.002	0.002	PASS	Atlas-SNP
KRT24	192666	hgsc.bcm.edu	hg19	17	38855731	38855731	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2Z-A9JI-01A-11D-A42J-10	TCGA-2Z-A9JI-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5bfd6e6f-8fab-42fd-a989-337b66a1d899	df9506ba-fa32-4644-b582-2207bd0595fc	.	KRT24	NM_019016	exon6	c.C1326G	p.I442M	GGTCTCGATCTCC	.	78.0	22.0	74.0	0.0	.	60	.	.	.	none	.	.	PASS	Atlas-SNP
RBM10	8241	hgsc.bcm.edu	hg19	X	47030582	47030582	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Z-A9JI-01A-11D-A42J-10	TCGA-2Z-A9JI-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5bfd6e6f-8fab-42fd-a989-337b66a1d899	df9506ba-fa32-4644-b582-2207bd0595fc	.	RBM10	NM_001204468	exon4	c.G552T	p.E184D	GGAGGAGGATGAG	.	65.0	5.0	90.0	0.0	.	117	.	.	.	none	.	.	PASS	Atlas-SNP
KRTAP5-4	387267	hgsc.bcm.edu	hg19	11	1643084	1643085	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-2Z-A9JI-01A-11D-A42J-10	TCGA-2Z-A9JI-10A-01D-A42M-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5bfd6e6f-8fab-42fd-a989-337b66a1d899	df9506ba-fa32-4644-b582-2207bd0595fc	KRTAP5-4,right_lower_lobe,carcinoma,0,1	KRTAP5-4	NM_001012709	exon1	c.240_241insG	p.G80fs	.	.	256.0	19.0	228.0	0.0	.	78	.	0.0742188	0	none	.	.	PASS	Atlas-INDEL
RIMBP3C	150221	hgsc.bcm.edu	hg19	22	21741340	21741341	+	In_Frame_Ins	INS	-	-	TGCAGG	novel		TCGA-2Z-A9JI-01A-11D-A42J-10	TCGA-2Z-A9JI-10A-01D-A42M-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5bfd6e6f-8fab-42fd-a989-337b66a1d899	df9506ba-fa32-4644-b582-2207bd0595fc	.	RIMBP3C	NM_001128633	exon1	c.3193_3194insTGCAGG	p.L1065delinsLQV	.	.	7.0	23.0	15.0	0.0	.	6	.	3.286	.	none	.	.	PASS	Pindel