Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
HSPG2	3339	hgsc.bcm.edu	hg19	1	22176680	22176680	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Z-A9J6-01A-11D-A382-10	TCGA-2Z-A9J6-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9f71f-1f39-480d-bb51-01ec0e2b06dd	6b322937-8164-4794-b588-a7711b2e8a48	.	HSPG2	NM_005529	exon57	c.G7300A	p.G2434R	TGACCCCAAGTGC	.	89.0	11.0	146.0	0.0	.	311	.	.	.	none	.	.	PASS	Atlas-SNP
TAF12	6883	hgsc.bcm.edu	hg19	1	28948461	28948461	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Z-A9J6-01A-11D-A382-10	TCGA-2Z-A9J6-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9f71f-1f39-480d-bb51-01ec0e2b06dd	6b322937-8164-4794-b588-a7711b2e8a48	.	TAF12	NM_001135218	exon2	c.G133A	p.G45R	CTGCCCCAGGAGT	.	112.0	5.0	132.0	0.0	.	17	.	.	.	none	.	.	PASS	Atlas-SNP
FPGT	8790	hgsc.bcm.edu	hg19	1	74671342	74671342	+	Silent	SNP	A	A	G	novel		TCGA-2Z-A9J6-01A-11D-A382-10	TCGA-2Z-A9J6-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9f71f-1f39-480d-bb51-01ec0e2b06dd	6b322937-8164-4794-b588-a7711b2e8a48	.	FPGT	NM_003838	exon4	c.A1611G	p.S537S	TGACTCAGTTATA	.	90.0	31.0	74.0	0.0	.	77	.	.	.	none	.	.	PASS	Atlas-SNP
CA14	23632	hgsc.bcm.edu	hg19	1	150235713	150235713	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2Z-A9J6-01A-11D-A382-10	TCGA-2Z-A9J6-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9f71f-1f39-480d-bb51-01ec0e2b06dd	6b322937-8164-4794-b588-a7711b2e8a48	.	CA14	NM_012113	exon8	c.G736C	p.G246R	CTTCAGGGGACAT	.	178.0	77.0	149.0	0.0	.	37	.	.	.	none	.	.	PASS	Atlas-SNP
RPRD2	23248	hgsc.bcm.edu	hg19	1	150437078	150437078	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Z-A9J6-01A-11D-A382-10	TCGA-2Z-A9J6-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9f71f-1f39-480d-bb51-01ec0e2b06dd	6b322937-8164-4794-b588-a7711b2e8a48	.	RPRD2	NM_015203	exon10	c.C1487A	p.P496H	AAACACCTGCACC	.	92.0	39.0	72.0	0.0	.	189	.	.	.	none	.	.	PASS	Atlas-SNP
KDM5B	10765	hgsc.bcm.edu	hg19	1	202724423	202724423	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Z-A9J6-01A-11D-A382-10	TCGA-2Z-A9J6-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9f71f-1f39-480d-bb51-01ec0e2b06dd	6b322937-8164-4794-b588-a7711b2e8a48	.	KDM5B	NM_006618	exon11	c.G1514A	p.S505N	GAATAGCTCCAGT	.	77.0	25.0	78.0	0.0	.	166	.	.	.	none	.	.	PASS	Atlas-SNP
CGREF1	10669	hgsc.bcm.edu	hg19	2	27324436	27324436	+	Silent	SNP	G	G	T	novel		TCGA-2Z-A9J6-01A-11D-A382-10	TCGA-2Z-A9J6-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9f71f-1f39-480d-bb51-01ec0e2b06dd	6b322937-8164-4794-b588-a7711b2e8a48	.	CGREF1	NM_001166239	exon6	c.C663A	p.P221P	CCCTCTGGGCCCT	.	50.0	15.0	47.0	0.0	.	31	.	.	.	none	.	.	PASS	Atlas-SNP
C2orf78	388960	hgsc.bcm.edu	hg19	2	74043789	74043789	+	Silent	SNP	A	A	T	novel		TCGA-2Z-A9J6-01A-11D-A382-10	TCGA-2Z-A9J6-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9f71f-1f39-480d-bb51-01ec0e2b06dd	6b322937-8164-4794-b588-a7711b2e8a48	.	C2orf78	NM_001080474	exon3	c.A2439T	p.S813S	GCCATCAGCCTAC	.	83.0	34.0	70.0	0.0	.	150	.	.	.	none	.	.	PASS	Atlas-SNP
PKP4	8502	hgsc.bcm.edu	hg19	2	159477605	159477605	+	Silent	SNP	A	A	G	novel		TCGA-2Z-A9J6-01A-11D-A382-10	TCGA-2Z-A9J6-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9f71f-1f39-480d-bb51-01ec0e2b06dd	6b322937-8164-4794-b588-a7711b2e8a48	.	PKP4	NM_001005476	exon5	c.A384G	p.P128P	TTCACCAGAACAG	.	253.0	83.0	241.0	0.0	.	133	.	.	.	none	.	.	PASS	Atlas-SNP
HSPE1	3336	hgsc.bcm.edu	hg19	2	198367837	198367837	+	Silent	SNP	A	A	G	novel		TCGA-2Z-A9J6-01A-11D-A382-10	TCGA-2Z-A9J6-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9f71f-1f39-480d-bb51-01ec0e2b06dd	6b322937-8164-4794-b588-a7711b2e8a48	.	HSPE1	NM_002157	exon3	c.A243G	p.V81V	CAAAGTAGTTCTA	.	31.0	13.0	69.0	0.0	.	2	.	.	.	none	.	.	PASS	Atlas-SNP
CD200R1	131450	hgsc.bcm.edu	hg19	3	112648333	112648333	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2Z-A9J6-01A-11D-A382-10	TCGA-2Z-A9J6-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9f71f-1f39-480d-bb51-01ec0e2b06dd	6b322937-8164-4794-b588-a7711b2e8a48	.	CD200R1	NM_138806	exon4	c.A224C	p.K75T	GCCATCTTTACAG	.	50.0	14.0	30.0	0.0	.	91	.	.	.	none	.	.	PASS	Atlas-SNP
IGSF10	285313	hgsc.bcm.edu	hg19	3	151155418	151155418	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2Z-A9J6-01A-11D-A382-10	TCGA-2Z-A9J6-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9f71f-1f39-480d-bb51-01ec0e2b06dd	6b322937-8164-4794-b588-a7711b2e8a48	.	IGSF10	NM_178822	exon6	c.T6931A	p.F2311I	AGATAAAGTCGGC	.	139.0	22.0	104.0	0.0	.	279	.	.	.	none	.	.	PASS	Atlas-SNP
PHC3	80012	hgsc.bcm.edu	hg19	3	169896600	169896600	+	Missense_Mutation	SNP	C	C	A	rs375674359		TCGA-2Z-A9J6-01A-11D-A382-10	TCGA-2Z-A9J6-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9f71f-1f39-480d-bb51-01ec0e2b06dd	6b322937-8164-4794-b588-a7711b2e8a48	.	PHC3	NM_024947	exon2	c.G141T	p.Q47H	AGAGATCTGTGGC	.	72.0	14.0	84.0	0.0	.	113	.	.	.	weak	.	.	PASS	Atlas-SNP
SLC6A19	340024	hgsc.bcm.edu	hg19	5	1221280	1221280	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Z-A9J6-01A-11D-A382-10	TCGA-2Z-A9J6-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9f71f-1f39-480d-bb51-01ec0e2b06dd	6b322937-8164-4794-b588-a7711b2e8a48	.	SLC6A19	NM_001003841	exon11	c.T1553C	p.I518T	AGGACATCGAGTT	.	60.0	28.0	89.0	0.0	.	99	.	.	.	none	.	.	PASS	Atlas-SNP
ADAMTS6	11174	hgsc.bcm.edu	hg19	5	64755996	64755996	+	Splice_Site	SNP	C	C	T	novel		TCGA-2Z-A9J6-01A-11D-A382-10	TCGA-2Z-A9J6-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9f71f-1f39-480d-bb51-01ec0e2b06dd	6b322937-8164-4794-b588-a7711b2e8a48	.	ADAMTS6	NM_197941	exon5	c.631+1G>A	.	CACTCACCCGAAA	.	59.0	4.0	49.0	0.0	.	174	.	.	.	none	.	.	PASS	Atlas-SNP
ELFN1	392617	hgsc.bcm.edu	hg19	7	1784273	1784273	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Z-A9J6-01A-11D-A382-10	TCGA-2Z-A9J6-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9f71f-1f39-480d-bb51-01ec0e2b06dd	6b322937-8164-4794-b588-a7711b2e8a48	.	ELFN1	NM_001128636	exon2	c.C41A	p.A14E	GCGTGGCGGCCGC	.	151.0	34.0	189.0	0.0	.	22	.	.	.	none	.	.	PASS	Atlas-SNP
PIP	5304	hgsc.bcm.edu	hg19	7	142832288	142832288	+	Missense_Mutation	SNP	C	C	T	rs376369577		TCGA-2Z-A9J6-01A-11D-A382-10	TCGA-2Z-A9J6-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9f71f-1f39-480d-bb51-01ec0e2b06dd	6b322937-8164-4794-b588-a7711b2e8a48	.	PIP	NM_002652	exon2	c.C97T	p.R33W	ATCAGTCGGAAGA	.	103.0	63.0	68.0	0.0	.	34	.	.	.	weak	.	.	PASS	Atlas-SNP
GSTK1	373156	hgsc.bcm.edu	hg19	7	142961758	142961758	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2Z-A9J6-01A-11D-A382-10	TCGA-2Z-A9J6-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9f71f-1f39-480d-bb51-01ec0e2b06dd	6b322937-8164-4794-b588-a7711b2e8a48	.	GSTK1	NM_015917	exon3	c.T272A	p.M91K	CTGTGATGCTTGA	.	65.0	30.0	49.0	0.0	.	36	.	.	.	none	.	.	PASS	Atlas-SNP
CHD7	55636	hgsc.bcm.edu	hg19	8	61707584	61707584	+	Silent	SNP	A	A	G	novel		TCGA-2Z-A9J6-01A-11D-A382-10	TCGA-2Z-A9J6-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9f71f-1f39-480d-bb51-01ec0e2b06dd	6b322937-8164-4794-b588-a7711b2e8a48	.	CHD7	NM_017780	exon4	c.A2136G	p.K712K	GAAGAAAAAGGTC	.	100.0	7.0	104.0	0.0	.	534	.	.	.	none	.	.	PASS	Atlas-SNP
VCPIP1	80124	hgsc.bcm.edu	hg19	8	67576667	67576667	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Z-A9J6-01A-11D-A382-10	TCGA-2Z-A9J6-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9f71f-1f39-480d-bb51-01ec0e2b06dd	6b322937-8164-4794-b588-a7711b2e8a48	.	VCPIP1	NM_025054	exon1	c.G2527T	p.G843C	TGTCGCCATGCTG	.	143.0	46.0	108.0	0.0	.	110	.	.	.	none	.	.	PASS	Atlas-SNP
USP20	10868	hgsc.bcm.edu	hg19	9	132625464	132625464	+	Splice_Site	SNP	G	G	T	novel		TCGA-2Z-A9J6-01A-11D-A382-10	TCGA-2Z-A9J6-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9f71f-1f39-480d-bb51-01ec0e2b06dd	6b322937-8164-4794-b588-a7711b2e8a48	.	USP20	NM_001110303	exon9	c.498-1G>T	.	CACCCAGCCCGCC	.	125.0	41.0	91.0	0.0	.	186	.	.	.	none	.	.	PASS	Atlas-SNP
CUBN	8029	hgsc.bcm.edu	hg19	10	17164868	17164868	+	Silent	SNP	T	T	C	novel		TCGA-2Z-A9J6-01A-11D-A382-10	TCGA-2Z-A9J6-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9f71f-1f39-480d-bb51-01ec0e2b06dd	6b322937-8164-4794-b588-a7711b2e8a48	.	CUBN	NM_001081	exon6	c.A519G	p.E173E	CTCACATTCGTTA	.	153.0	62.0	146.0	0.0	.	515	.	.	.	none	.	.	PASS	Atlas-SNP
CTBP2	1488	hgsc.bcm.edu	hg19	10	126715159	126715159	+	Silent	SNP	A	A	G	novel		TCGA-2Z-A9J6-01A-11D-A382-10	TCGA-2Z-A9J6-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9f71f-1f39-480d-bb51-01ec0e2b06dd	6b322937-8164-4794-b588-a7711b2e8a48	.,1	CTBP2	NM_022802	exon1	c.T1170C	p.A390A	CAGAGGAGCCGCA	.	49.0	5.0	80.0	0.0	.	100	.	.	.	none	.	.	PASS	Atlas-SNP
METTL15	196074	hgsc.bcm.edu	hg19	11	28311807	28311807	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Z-A9J6-01A-11D-A382-10	TCGA-2Z-A9J6-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9f71f-1f39-480d-bb51-01ec0e2b06dd	6b322937-8164-4794-b588-a7711b2e8a48	.	METTL15	NM_152636	exon5	c.G462T	p.M154I	ATTAATGAAAGCT	.	73.0	23.0	42.0	0.0	.	63	.	.	.	none	.	.	PASS	Atlas-SNP
CDC42BPG	55561	hgsc.bcm.edu	hg19	11	64594522	64594522	+	Silent	SNP	C	C	T	novel		TCGA-2Z-A9J6-01A-11D-A382-10	TCGA-2Z-A9J6-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9f71f-1f39-480d-bb51-01ec0e2b06dd	6b322937-8164-4794-b588-a7711b2e8a48	.	CDC42BPG	NM_017525	exon34	c.G4389A	p.P1463P	ACTAACCGGGGAC	.	92.0	39.0	93.0	0.0	.	101	.	.	.	none	.	.	PASS	Atlas-SNP
TM7SF2	7108	hgsc.bcm.edu	hg19	11	64882278	64882278	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2Z-A9J6-01A-11D-A382-10	TCGA-2Z-A9J6-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9f71f-1f39-480d-bb51-01ec0e2b06dd	6b322937-8164-4794-b588-a7711b2e8a48	.	TM7SF2	NM_003273	exon6	c.T697A	p.Y233N	TTGCTCTACGTGG	.	98.0	34.0	112.0	0.0	.	30	.	.	.	none	.	.	PASS	Atlas-SNP
C11orf30	56946	hgsc.bcm.edu	hg19	11	76255546	76255546	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Z-A9J6-01A-11D-A382-10	TCGA-2Z-A9J6-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9f71f-1f39-480d-bb51-01ec0e2b06dd	6b322937-8164-4794-b588-a7711b2e8a48	.	C11orf30	NM_020193	exon19	c.G2953A	p.D985N	CAGGCAGACCAGC	.	77.0	22.0	42.0	0.0	.	123	.	.	.	none	.	.	PASS	Atlas-SNP
HDAC7	51564	hgsc.bcm.edu	hg19	12	48179627	48179627	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Z-A9J6-01A-11D-A382-10	TCGA-2Z-A9J6-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9f71f-1f39-480d-bb51-01ec0e2b06dd	6b322937-8164-4794-b588-a7711b2e8a48	.	HDAC7	NM_015401	exon23	c.G2614A	p.G872S	CTGCGCCTCCTGC	.	203.0	62.0	176.0	0.0	.	71	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF219	51222	hgsc.bcm.edu	hg19	14	21560330	21560330	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Z-A9J6-01A-11D-A382-10	TCGA-2Z-A9J6-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9f71f-1f39-480d-bb51-01ec0e2b06dd	6b322937-8164-4794-b588-a7711b2e8a48	.	ZNF219	NM_001102454	exon3	c.C1126T	p.P376S	GGCTCGGGGGCTC	.	34.0	14.0	99.0	0.0	.	28	.	.	.	none	.	.	PASS	Atlas-SNP
UBE3A	7337	hgsc.bcm.edu	hg19	15	25616263	25616263	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2Z-A9J6-01A-11D-A382-10	TCGA-2Z-A9J6-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9f71f-1f39-480d-bb51-01ec0e2b06dd	6b322937-8164-4794-b588-a7711b2e8a48	UBE3A,colon,carcinoma,0,1	UBE3A	NM_000462	exon7	c.T1067A	p.F356Y	CTGTTAAATTCAT	.	59.0	23.0	60.0	0.0	.	109	.	.	.	none	.	.	PASS	Atlas-SNP
LTK	4058	hgsc.bcm.edu	hg19	15	41797613	41797613	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Z-A9J6-01A-11D-A382-10	TCGA-2Z-A9J6-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9f71f-1f39-480d-bb51-01ec0e2b06dd	6b322937-8164-4794-b588-a7711b2e8a48	.	LTK	NM_002344	exon14	c.A1813G	p.S605G	GCCGACTGTGCCT	.	172.0	60.0	240.0	0.0	.	117	.	.	.	none	.	.	PASS	Atlas-SNP
CREBBP	1387	hgsc.bcm.edu	hg19	16	3779274	3779274	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2Z-A9J6-01A-11D-A382-10	TCGA-2Z-A9J6-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9f71f-1f39-480d-bb51-01ec0e2b06dd	6b322937-8164-4794-b588-a7711b2e8a48	.	CREBBP	NM_004380	exon31	c.C5774G	p.A1925G	GTCCGGGCCACGC	.	57.0	12.0	54.0	0.0	.	546	.	.	.	none	.	.	PASS	Atlas-SNP
GRIN2A	2903	hgsc.bcm.edu	hg19	16	10032281	10032281	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Z-A9J6-01A-11D-A382-10	TCGA-2Z-A9J6-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9f71f-1f39-480d-bb51-01ec0e2b06dd	6b322937-8164-4794-b588-a7711b2e8a48	.	GRIN2A	NM_000833	exon4	c.G542T	p.R181M	AATTCCCTGTAGC	.	104.0	28.0	29.0	0.0	.	366	.	.	.	none	.	.	PASS	Atlas-SNP
ABCC6	368	hgsc.bcm.edu	hg19	16	16244436	16244436	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2Z-A9J6-01A-11D-A382-10	TCGA-2Z-A9J6-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9f71f-1f39-480d-bb51-01ec0e2b06dd	6b322937-8164-4794-b588-a7711b2e8a48	.	ABCC6	NM_001171	exon30	c.C4402G	p.R1468G	CTTACCGGGCACA	.	141.0	71.0	121.0	0.0	.	110	.	.	.	none	.	.	PASS	Atlas-SNP
RAI1	10743	hgsc.bcm.edu	hg19	17	17698698	17698698	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Z-A9J6-01A-11D-A382-10	TCGA-2Z-A9J6-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9f71f-1f39-480d-bb51-01ec0e2b06dd	6b322937-8164-4794-b588-a7711b2e8a48	.	RAI1	NM_030665	exon3	c.G2436T	p.Q812H	CAAGCAGGAGGAG	.	111.0	30.0	109.0	0.0	.	121	.	.	.	none	.	.	PASS	Atlas-SNP
RAI1	10743	hgsc.bcm.edu	hg19	17	17698712	17698712	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Z-A9J6-01A-11D-A382-10	TCGA-2Z-A9J6-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9f71f-1f39-480d-bb51-01ec0e2b06dd	6b322937-8164-4794-b588-a7711b2e8a48	.	RAI1	NM_030665	exon3	c.G2450T	p.G817V	TGGGTGGGGTGAA	.	115.0	30.0	100.0	0.0	.	121	.	.	.	none	.	.	PASS	Atlas-SNP
SLC5A10	125206	hgsc.bcm.edu	hg19	17	18922878	18922878	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Z-A9J6-01A-11D-A382-10	TCGA-2Z-A9J6-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9f71f-1f39-480d-bb51-01ec0e2b06dd	6b322937-8164-4794-b588-a7711b2e8a48	.	SLC5A10	NM_152351	exon12	c.G1432A	p.V478I	CTGGGCGTCTTCT	.	68.0	18.0	37.0	0.0	.	55	.	.	.	none	.	.	PASS	Atlas-SNP
SPAG9	9043	hgsc.bcm.edu	hg19	17	49157055	49157055	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2Z-A9J6-01A-11D-A382-10	TCGA-2Z-A9J6-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9f71f-1f39-480d-bb51-01ec0e2b06dd	6b322937-8164-4794-b588-a7711b2e8a48	.	SPAG9	NM_001130528	exon2	c.A314T	p.E105V	TCAAATTCAATGA	.	94.0	22.0	49.0	0.0	.	151	.	.	.	none	.	.	PASS	Atlas-SNP
BAIAP2	10458	hgsc.bcm.edu	hg19	17	79031740	79031740	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Z-A9J6-01A-11D-A382-10	TCGA-2Z-A9J6-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9f71f-1f39-480d-bb51-01ec0e2b06dd	6b322937-8164-4794-b588-a7711b2e8a48	.	BAIAP2	NM_001144888	exon3	c.A190G	p.S64G	CTGGCCAGCGAGA	.	56.0	25.0	40.0	0.0	.	74	.	.	.	none	.	.	PASS	Atlas-SNP
LAMA3	3909	hgsc.bcm.edu	hg19	18	21418824	21418824	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Z-A9J6-01A-11D-A382-10	TCGA-2Z-A9J6-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9f71f-1f39-480d-bb51-01ec0e2b06dd	6b322937-8164-4794-b588-a7711b2e8a48	.	LAMA3	NM_001127717	exon26	c.G3173T	p.G1058V	GTTATGGGCGATT	.	79.0	24.0	64.0	0.0	.	397	.	.	.	none	.	.	PASS	Atlas-SNP
SMAD2	4087	hgsc.bcm.edu	hg19	18	45395677	45395677	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2Z-A9J6-01A-11D-A382-10	TCGA-2Z-A9J6-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9f71f-1f39-480d-bb51-01ec0e2b06dd	6b322937-8164-4794-b588-a7711b2e8a48	.	SMAD2	NM_005901	exon4	c.T457G	p.F153V	GATTAAAAGCATA	.	124.0	9.0	90.0	0.0	.	85	.	.	.	none	.	.	PASS	Atlas-SNP
OR7G1	125962	hgsc.bcm.edu	hg19	19	9226308	9226308	+	Silent	SNP	G	G	A	novel		TCGA-2Z-A9J6-01A-11D-A382-10	TCGA-2Z-A9J6-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9f71f-1f39-480d-bb51-01ec0e2b06dd	6b322937-8164-4794-b588-a7711b2e8a48	.	OR7G1	NM_001005192	exon1	c.C132T	p.L44L	GAGAATGAGCAGG	.	63.0	20.0	82.0	0.0	.	53	.	.	.	none	.	.	PASS	Atlas-SNP
QTRT1	81890	hgsc.bcm.edu	hg19	19	10823829	10823829	+	Silent	SNP	G	G	A	novel		TCGA-2Z-A9J6-01A-11D-A382-10	TCGA-2Z-A9J6-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9f71f-1f39-480d-bb51-01ec0e2b06dd	6b322937-8164-4794-b588-a7711b2e8a48	.	QTRT1	NM_031209	exon10	c.G1095A	p.V365V	CATCGTGGAGAAG	.	41.0	13.0	57.0	0.0	.	25	.	.	.	none	.	.	PASS	Atlas-SNP
ETHE1	23474	hgsc.bcm.edu	hg19	19	44012185	44012185	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2Z-A9J6-01A-11D-A382-10	TCGA-2Z-A9J6-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9f71f-1f39-480d-bb51-01ec0e2b06dd	6b322937-8164-4794-b588-a7711b2e8a48	.	ETHE1	NM_014297	exon6	c.A623T	p.E208V	GTCCTCTCCTCCT	.	52.0	24.0	49.0	0.0	.	7	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF180	7733	hgsc.bcm.edu	hg19	19	44980632	44980632	+	Missense_Mutation	SNP	T	T	C	rs141416252		TCGA-2Z-A9J6-01A-11D-A382-10	TCGA-2Z-A9J6-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9f71f-1f39-480d-bb51-01ec0e2b06dd	6b322937-8164-4794-b588-a7711b2e8a48	.	ZNF180	NM_013256	exon5	c.A2066G	p.Y689C	CATTCATAGAGTT	.	77.0	25.0	75.0	0.0	.	103	.	.	.	weak	T|1.000;C|0.000	0.000	PASS	Atlas-SNP
PROKR2	128674	hgsc.bcm.edu	hg19	20	5294901	5294901	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Z-A9J6-01A-11D-A382-10	TCGA-2Z-A9J6-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9f71f-1f39-480d-bb51-01ec0e2b06dd	6b322937-8164-4794-b588-a7711b2e8a48	.	PROKR2	NM_144773	exon1	c.G115A	p.E39K	CATCCTCATCCAT	.	114.0	33.0	111.0	0.0	.	90	.	.	.	none	.	.	PASS	Atlas-SNP
SLC13A3	64849	hgsc.bcm.edu	hg19	20	45239165	45239165	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2Z-A9J6-01A-11D-A382-10	TCGA-2Z-A9J6-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9f71f-1f39-480d-bb51-01ec0e2b06dd	6b322937-8164-4794-b588-a7711b2e8a48	.	SLC13A3	NM_022829	exon3	c.T461A	p.I154N	TTGGCAATGGGAA	.	53.0	19.0	56.0	0.0	.	88	.	.	.	none	.	.	PASS	Atlas-SNP
TTC3	7267	hgsc.bcm.edu	hg19	21	38494164	38494164	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2Z-A9J6-01A-11D-A382-10	TCGA-2Z-A9J6-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9f71f-1f39-480d-bb51-01ec0e2b06dd	6b322937-8164-4794-b588-a7711b2e8a48	.	TTC3	NM_001001894	exon12	c.C948G	p.D316E	ATATGACTGGGCC	.	181.0	24.0	217.0	0.0	.	182	.	.	.	none	.	.	PASS	Atlas-SNP
MYO18B	84700	hgsc.bcm.edu	hg19	22	26164198	26164198	+	Silent	SNP	G	G	C	novel		TCGA-2Z-A9J6-01A-11D-A382-10	TCGA-2Z-A9J6-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9f71f-1f39-480d-bb51-01ec0e2b06dd	6b322937-8164-4794-b588-a7711b2e8a48	.	MYO18B	NM_032608	exon4	c.G315C	p.L105L	CATTCTGGGCAAG	.	186.0	10.0	157.0	0.0	.	322	.	.	.	none	.	.	PASS	Atlas-SNP
ITIH6	347365	hgsc.bcm.edu	hg19	X	54777684	54777684	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Z-A9J6-01A-11D-A382-10	TCGA-2Z-A9J6-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9f71f-1f39-480d-bb51-01ec0e2b06dd	6b322937-8164-4794-b588-a7711b2e8a48	.	.	NM_198510	exon12	c.G3482A	p.R1161H	GAACTGCGGCTGA	.	153.0	106.0	123.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
CCDC64	92558	hgsc.bcm.edu	hg19	12	120427989	120427991	+	In_Frame_Del	DEL	AGG	AGG	-	novel		TCGA-2Z-A9J6-01A-11D-A382-10	TCGA-2Z-A9J6-10A-01D-A385-10	AGG	AGG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9f71f-1f39-480d-bb51-01ec0e2b06dd	6b322937-8164-4794-b588-a7711b2e8a48	.	CCDC64	NM_207311	exon1	c.316_318del	p.106_106del	.	.	168.0	42.0	157.0	0.0	.	40	.	0.25	0	none	.	.	PASS	Atlas-Indel,Pindel
ST7	7982	hgsc.bcm.edu	hg19	7	116770588	116770588	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-2Z-A9J6-01A-11D-A382-10	TCGA-2Z-A9J6-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9f71f-1f39-480d-bb51-01ec0e2b06dd	6b322937-8164-4794-b588-a7711b2e8a48	.	ST7	NM_018412	exon5	c.492delC	p.D164fs	.	.	116.0	33.0	39.0	0.0	.	64	.	0.284483	0	none	.	.	PASS	Atlas-Indel,Pindel
TGOLN2	10618	hgsc.bcm.edu	hg19	2	85553951	85553951	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-2Z-A9J6-01A-11D-A382-10	TCGA-2Z-A9J6-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9f71f-1f39-480d-bb51-01ec0e2b06dd	6b322937-8164-4794-b588-a7711b2e8a48	.	TGOLN2	NM_001206841	exon2	c.905delC	p.T302fs	.	.	130.0	41.0	117.0	0.0	.	32	.	0.315385	0	none	.	.	PASS	Atlas-Indel,Pindel
MYH4	4622	hgsc.bcm.edu	hg19	17	10352186	10352187	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-2Z-A9J6-01A-11D-A382-10	TCGA-2Z-A9J6-10A-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9f71f-1f39-480d-bb51-01ec0e2b06dd	6b322937-8164-4794-b588-a7711b2e8a48	.	MYH4	NM_017533	exon31	c.4360_4361insT	p.D1454_K1455delinsX	.	.	138.0	38.0	76.0	0.0	.	349	.	0.275362	0	none	.	.	PASS	Atlas-Indel,Pindel
MUC4	4585	hgsc.bcm.edu	hg19	3	195506007	195506102	+	In_Frame_Del	DEL	GGTGACAGGAAGAGGCGTGGTGTCACCTGTGGATACTGAGGAAAGGCTGGTGACAGGAAGAGGGGTGGCCTGACCTGTGGATGCAGAGGAAGTGTC	GGTGACAGGAAGAGGCGTGGTGTCACCTGTGGATACTGAGGAAAGGCTGGTGACAGGAAGAGGGGTGGCCTGACCTGTGGATGCAGAGGAAGTGTC	-	novel		TCGA-2Z-A9J6-01A-11D-A382-10	TCGA-2Z-A9J6-10A-01D-A385-10	GGTGACAGGAAGAGGCGTGGTGTCACCTGTGGATACTGAGGAAAGGCTGGTGACAGGAAGAGGGGTGGCCTGACCTGTGGATGCAGAGGAAGTGTC	GGTGACAGGAAGAGGCGTGGTGTCACCTGTGGATACTGAGGAAAGGCTGGTGACAGGAAGAGGGGTGGCCTGACCTGTGGATGCAGAGGAAGTGTC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9f71f-1f39-480d-bb51-01ec0e2b06dd	6b322937-8164-4794-b588-a7711b2e8a48	.	MUC4	NM_018406	exon2	c.12350_12445del	p.4117_4149del	.	.	145.0	14.0	73.0	0.0	.	1505	.	0.097	.	none	.	.	PASS	Pindel